Multiple sequence alignment - TraesCS4A01G058800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G058800 chr4A 100.000 6008 0 0 1 6008 51136951 51142958 0.000000e+00 11095.0
1 TraesCS4A01G058800 chr4D 94.799 3576 111 32 1 3554 412718720 412715198 0.000000e+00 5504.0
2 TraesCS4A01G058800 chr4D 94.471 1682 65 12 3740 5413 412715218 412713557 0.000000e+00 2566.0
3 TraesCS4A01G058800 chr4D 90.196 561 33 8 5453 6007 412713202 412712658 0.000000e+00 712.0
4 TraesCS4A01G058800 chr4D 94.444 36 2 0 3533 3568 20231908 20231943 8.410000e-04 56.5
5 TraesCS4A01G058800 chr4B 94.491 2160 75 19 1 2150 509038321 509036196 0.000000e+00 3290.0
6 TraesCS4A01G058800 chr4B 91.341 1640 86 20 3742 5368 509034667 509033071 0.000000e+00 2191.0
7 TraesCS4A01G058800 chr4B 91.470 891 53 8 2123 3012 509036165 509035297 0.000000e+00 1203.0
8 TraesCS4A01G058800 chr4B 92.328 378 27 2 3005 3382 509035238 509034863 2.460000e-148 536.0
9 TraesCS4A01G058800 chr4B 88.272 162 15 4 3377 3538 509034822 509034665 2.210000e-44 191.0
10 TraesCS4A01G058800 chr4B 88.462 130 8 4 5829 5951 508979362 508979233 3.750000e-32 150.0
11 TraesCS4A01G058800 chr4B 95.918 49 2 0 5429 5477 509032493 509032445 4.990000e-11 80.5
12 TraesCS4A01G058800 chr5B 90.909 165 15 0 3578 3742 686710568 686710404 7.840000e-54 222.0
13 TraesCS4A01G058800 chr5B 90.303 165 16 0 3578 3742 686898929 686898765 3.650000e-52 217.0
14 TraesCS4A01G058800 chr5B 89.091 165 18 0 3578 3742 686830917 686830753 7.890000e-49 206.0
15 TraesCS4A01G058800 chr5B 89.630 135 12 2 3609 3741 528516764 528516898 2.880000e-38 171.0
16 TraesCS4A01G058800 chr6D 91.667 132 10 1 3609 3739 401311961 401312092 1.330000e-41 182.0
17 TraesCS4A01G058800 chr1B 86.667 165 20 2 3577 3739 470430361 470430197 1.330000e-41 182.0
18 TraesCS4A01G058800 chr1B 89.130 46 4 1 3524 3568 470430378 470430333 8.410000e-04 56.5
19 TraesCS4A01G058800 chr1B 94.444 36 2 0 3533 3568 630751466 630751501 8.410000e-04 56.5
20 TraesCS4A01G058800 chr7D 84.946 186 18 2 3572 3747 518906763 518906948 4.780000e-41 180.0
21 TraesCS4A01G058800 chr7D 88.060 134 13 3 3609 3739 629121094 629121227 8.060000e-34 156.0
22 TraesCS4A01G058800 chr7D 85.470 117 13 1 3623 3739 403152318 403152430 1.060000e-22 119.0
23 TraesCS4A01G058800 chr7D 100.000 31 0 0 3541 3571 47815803 47815773 2.340000e-04 58.4
24 TraesCS4A01G058800 chr5D 87.879 132 15 1 3612 3742 553006918 553006787 2.900000e-33 154.0
25 TraesCS4A01G058800 chr3D 86.719 128 14 3 3564 3690 574280434 574280309 8.120000e-29 139.0
26 TraesCS4A01G058800 chr2A 97.059 34 1 0 3535 3568 95211777 95211744 2.340000e-04 58.4
27 TraesCS4A01G058800 chr2A 97.059 34 1 0 3535 3568 745530946 745530979 2.340000e-04 58.4
28 TraesCS4A01G058800 chr1D 100.000 31 0 0 3541 3571 491929473 491929443 2.340000e-04 58.4
29 TraesCS4A01G058800 chr3A 92.105 38 3 0 3531 3568 421766905 421766942 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G058800 chr4A 51136951 51142958 6007 False 11095.000000 11095 100.000000 1 6008 1 chr4A.!!$F1 6007
1 TraesCS4A01G058800 chr4D 412712658 412718720 6062 True 2927.333333 5504 93.155333 1 6007 3 chr4D.!!$R1 6006
2 TraesCS4A01G058800 chr4B 509032445 509038321 5876 True 1248.583333 3290 92.303333 1 5477 6 chr4B.!!$R2 5476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 126 0.179000 GAGATCGACCTTGGGCATGT 59.821 55.0 0.00 0.00 0.00 3.21 F
282 285 0.454285 CGACCAAATTGAACGCGCAT 60.454 50.0 5.73 0.00 0.00 4.73 F
1963 1980 0.892755 ACGAACGGTGCAGGATAAGA 59.107 50.0 0.00 0.00 0.00 2.10 F
3655 3852 0.172578 GGGTGCCGCTAAATGGTTTC 59.827 55.0 0.00 0.00 0.00 2.78 F
3684 3881 0.039180 TAGCCCGCTATAGCCTGCTA 59.961 55.0 26.87 26.87 42.16 3.49 F
3705 3902 0.250513 AGCTGATTTGGAGGTCCGTC 59.749 55.0 0.00 0.00 39.43 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2026 0.740868 CCATGCTCCACGACACGATT 60.741 55.000 0.00 0.00 0.00 3.34 R
2008 2027 1.153568 CCATGCTCCACGACACGAT 60.154 57.895 0.00 0.00 0.00 3.73 R
3665 3862 0.039180 TAGCAGGCTATAGCGGGCTA 59.961 55.000 29.97 29.97 45.07 3.93 R
4480 4689 1.273048 TGTTGTTGGAGGTATACGCGT 59.727 47.619 19.17 19.17 0.00 6.01 R
4807 5020 2.043227 GGCACTACTATTCTGGGCTCT 58.957 52.381 0.00 0.00 0.00 4.09 R
5422 6186 2.189676 TCAAAGGATAGGTACCCGCAA 58.810 47.619 8.74 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.047443 GGAACTCGAGAGGTCGCCT 61.047 63.158 21.68 0.00 45.91 5.52
118 121 1.736586 CTCGGAGATCGACCTTGGG 59.263 63.158 0.00 0.00 43.74 4.12
123 126 0.179000 GAGATCGACCTTGGGCATGT 59.821 55.000 0.00 0.00 0.00 3.21
195 198 7.675062 ATAGGATCCTATGAGTGAATTCACAC 58.325 38.462 33.92 28.95 41.83 3.82
216 219 2.916556 CGACCATACGTGATGCGCG 61.917 63.158 0.00 0.00 46.11 6.86
282 285 0.454285 CGACCAAATTGAACGCGCAT 60.454 50.000 5.73 0.00 0.00 4.73
326 329 4.880120 AGTCGATCTACCACGAGTTATTCA 59.120 41.667 0.00 0.00 38.73 2.57
328 331 6.032094 GTCGATCTACCACGAGTTATTCAAA 58.968 40.000 0.00 0.00 39.16 2.69
355 358 3.060272 CGTACGTACATAGACCTACACCG 60.060 52.174 24.50 2.50 0.00 4.94
356 359 3.266510 ACGTACATAGACCTACACCGA 57.733 47.619 0.00 0.00 0.00 4.69
357 360 3.813443 ACGTACATAGACCTACACCGAT 58.187 45.455 0.00 0.00 0.00 4.18
358 361 4.960938 ACGTACATAGACCTACACCGATA 58.039 43.478 0.00 0.00 0.00 2.92
555 560 2.404750 GGGCTAGGAGGGAGGAGGA 61.405 68.421 0.00 0.00 0.00 3.71
561 570 2.693017 GAGGGAGGAGGAGGAGCA 59.307 66.667 0.00 0.00 0.00 4.26
671 680 2.760181 CTAGCGCGTATCGTGTATCTC 58.240 52.381 8.43 0.00 39.70 2.75
706 715 4.766375 CAACTTTATGGGTGTCCGTCTAT 58.234 43.478 0.00 0.00 35.24 1.98
816 827 1.880675 CCTCTCTACACACACACTCGT 59.119 52.381 0.00 0.00 0.00 4.18
853 864 7.714813 CACCTTCTTCTTCTTCTTCTTCTTCTT 59.285 37.037 0.00 0.00 0.00 2.52
854 865 7.931407 ACCTTCTTCTTCTTCTTCTTCTTCTTC 59.069 37.037 0.00 0.00 0.00 2.87
855 866 8.150296 CCTTCTTCTTCTTCTTCTTCTTCTTCT 58.850 37.037 0.00 0.00 0.00 2.85
856 867 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
857 868 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
858 869 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
859 870 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
860 871 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
861 872 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
913 924 2.233007 CTTCTGTTGGCTCTTCGCGC 62.233 60.000 0.00 0.00 40.44 6.86
1279 1296 3.490800 TTGTTCATGCGACATGATTGG 57.509 42.857 18.73 0.00 0.00 3.16
1559 1576 8.578308 TTCAGATTTCTTGCACAAATTAACAG 57.422 30.769 4.65 0.00 0.00 3.16
1563 1580 3.838565 TCTTGCACAAATTAACAGGGGA 58.161 40.909 0.00 0.00 0.00 4.81
1607 1624 4.750980 AGCTGAGCTGAGTGGTTCACAC 62.751 54.545 5.97 0.00 43.71 3.82
1838 1855 2.797278 CGTCTCGCTGCCCCCTATT 61.797 63.158 0.00 0.00 0.00 1.73
1963 1980 0.892755 ACGAACGGTGCAGGATAAGA 59.107 50.000 0.00 0.00 0.00 2.10
2013 2032 9.445786 AAAACACACAAAGAAGTATAAATCGTG 57.554 29.630 0.00 0.00 0.00 4.35
2020 2039 5.571784 AGAAGTATAAATCGTGTCGTGGA 57.428 39.130 0.00 0.00 0.00 4.02
2118 2137 1.962412 TTGCTATCTTTGTTTGCGCG 58.038 45.000 0.00 0.00 0.00 6.86
2120 2139 1.455908 GCTATCTTTGTTTGCGCGCG 61.456 55.000 28.44 28.44 0.00 6.86
2140 2225 2.546795 CGCTCTCTCTCTCTCTCTCTCC 60.547 59.091 0.00 0.00 0.00 3.71
2271 2356 0.386113 GCAAAAGCCGGTTGGTGTTA 59.614 50.000 1.90 0.00 37.67 2.41
2329 2415 0.533491 CCTGTGCATTCATGGGGTTG 59.467 55.000 0.00 0.00 0.00 3.77
2330 2416 1.259609 CTGTGCATTCATGGGGTTGT 58.740 50.000 0.00 0.00 0.00 3.32
2331 2417 1.619827 CTGTGCATTCATGGGGTTGTT 59.380 47.619 0.00 0.00 0.00 2.83
2332 2418 2.037511 CTGTGCATTCATGGGGTTGTTT 59.962 45.455 0.00 0.00 0.00 2.83
2333 2419 2.437281 TGTGCATTCATGGGGTTGTTTT 59.563 40.909 0.00 0.00 0.00 2.43
2334 2420 3.118112 TGTGCATTCATGGGGTTGTTTTT 60.118 39.130 0.00 0.00 0.00 1.94
2379 2465 4.536090 TGGTTCTTCCATGTCCTAACTCAT 59.464 41.667 0.00 0.00 41.93 2.90
2380 2466 5.724370 TGGTTCTTCCATGTCCTAACTCATA 59.276 40.000 0.00 0.00 41.93 2.15
2381 2467 6.049790 GGTTCTTCCATGTCCTAACTCATAC 58.950 44.000 0.00 0.00 35.97 2.39
2382 2468 5.515797 TCTTCCATGTCCTAACTCATACG 57.484 43.478 0.00 0.00 0.00 3.06
2394 2480 8.601476 GTCCTAACTCATACGTATTTTGAAAGG 58.399 37.037 5.03 8.93 0.00 3.11
2435 2521 3.616956 TTGATGGCTCGTGAAGATCTT 57.383 42.857 7.95 7.95 0.00 2.40
2510 2596 7.644551 GTCATTTTGAGATCTTGATTCTGATGC 59.355 37.037 0.00 0.00 0.00 3.91
2623 2709 1.242076 CCAGAGCTCCCTTTGTTGTG 58.758 55.000 10.93 0.00 0.00 3.33
2697 2783 2.865119 TTGCTCTTCCATGCTTCTGA 57.135 45.000 0.00 0.00 0.00 3.27
2724 2810 9.271828 AGCCAGATTTACTTGTTTAAATTTTGG 57.728 29.630 0.00 11.77 38.27 3.28
2835 2921 2.912956 TGTAGCCCCAGAGAAGAAACAT 59.087 45.455 0.00 0.00 0.00 2.71
3016 3167 7.226918 GGCCCTTATTTAACTGAGTCTTATCAC 59.773 40.741 0.00 0.00 0.00 3.06
3131 3282 6.767902 CAGTGGTACAATATATTGAAGCCAGT 59.232 38.462 28.13 26.09 44.16 4.00
3150 3301 8.453238 AGCCAGTATATAGATAGTCGGTAATG 57.547 38.462 0.00 0.00 0.00 1.90
3266 3417 9.175312 TGTTTACAGTAGGTGTGTTTTTATGAA 57.825 29.630 0.00 0.00 40.69 2.57
3412 3609 8.410141 GGTGCTAGCCACAAACAAAATATATTA 58.590 33.333 13.29 0.00 46.50 0.98
3448 3645 2.435437 ACAATCTTGCCTTGCCAGTTTT 59.565 40.909 0.00 0.00 0.00 2.43
3560 3757 9.233232 GTTTTCATCATAGTTTTAAATAGCCGG 57.767 33.333 0.00 0.00 0.00 6.13
3561 3758 6.554334 TCATCATAGTTTTAAATAGCCGGC 57.446 37.500 21.89 21.89 0.00 6.13
3562 3759 6.296026 TCATCATAGTTTTAAATAGCCGGCT 58.704 36.000 34.85 34.85 0.00 5.52
3563 3760 7.446769 TCATCATAGTTTTAAATAGCCGGCTA 58.553 34.615 36.88 36.88 0.00 3.93
3564 3761 8.100791 TCATCATAGTTTTAAATAGCCGGCTAT 58.899 33.333 37.79 37.79 40.63 2.97
3565 3762 9.378551 CATCATAGTTTTAAATAGCCGGCTATA 57.621 33.333 41.53 28.18 38.20 1.31
3566 3763 8.997621 TCATAGTTTTAAATAGCCGGCTATAG 57.002 34.615 41.53 22.50 38.20 1.31
3567 3764 7.548075 TCATAGTTTTAAATAGCCGGCTATAGC 59.452 37.037 41.53 29.09 38.20 2.97
3568 3765 4.689345 AGTTTTAAATAGCCGGCTATAGCG 59.311 41.667 41.53 13.06 43.26 4.26
3569 3766 2.953466 TAAATAGCCGGCTATAGCGG 57.047 50.000 41.53 21.93 43.26 5.52
3570 3767 1.263356 AAATAGCCGGCTATAGCGGA 58.737 50.000 41.53 21.69 43.02 5.54
3571 3768 1.263356 AATAGCCGGCTATAGCGGAA 58.737 50.000 41.53 20.91 43.02 4.30
3572 3769 1.486211 ATAGCCGGCTATAGCGGAAT 58.514 50.000 41.03 21.53 43.02 3.01
3573 3770 1.263356 TAGCCGGCTATAGCGGAATT 58.737 50.000 32.24 17.01 43.02 2.17
3574 3771 0.396811 AGCCGGCTATAGCGGAATTT 59.603 50.000 31.86 0.00 43.02 1.82
3575 3772 1.202770 AGCCGGCTATAGCGGAATTTT 60.203 47.619 31.86 0.00 43.02 1.82
3576 3773 1.197036 GCCGGCTATAGCGGAATTTTC 59.803 52.381 28.35 11.58 43.02 2.29
3577 3774 2.489971 CCGGCTATAGCGGAATTTTCA 58.510 47.619 28.35 0.00 43.02 2.69
3578 3775 3.074412 CCGGCTATAGCGGAATTTTCAT 58.926 45.455 28.35 0.00 43.02 2.57
3579 3776 3.125316 CCGGCTATAGCGGAATTTTCATC 59.875 47.826 28.35 6.51 43.02 2.92
3580 3777 3.745975 CGGCTATAGCGGAATTTTCATCA 59.254 43.478 23.91 0.00 43.02 3.07
3581 3778 4.393062 CGGCTATAGCGGAATTTTCATCAT 59.607 41.667 23.91 0.00 43.02 2.45
3582 3779 5.634896 GGCTATAGCGGAATTTTCATCATG 58.365 41.667 18.30 0.00 43.26 3.07
3583 3780 5.392380 GGCTATAGCGGAATTTTCATCATGG 60.392 44.000 18.30 0.00 43.26 3.66
3584 3781 5.182001 GCTATAGCGGAATTTTCATCATGGT 59.818 40.000 9.40 0.00 0.00 3.55
3585 3782 6.294176 GCTATAGCGGAATTTTCATCATGGTT 60.294 38.462 9.40 0.00 0.00 3.67
3586 3783 4.806640 AGCGGAATTTTCATCATGGTTT 57.193 36.364 0.00 0.00 0.00 3.27
3587 3784 5.151297 AGCGGAATTTTCATCATGGTTTT 57.849 34.783 0.00 0.00 0.00 2.43
3588 3785 6.279513 AGCGGAATTTTCATCATGGTTTTA 57.720 33.333 0.00 0.00 0.00 1.52
3589 3786 6.696411 AGCGGAATTTTCATCATGGTTTTAA 58.304 32.000 0.00 0.00 0.00 1.52
3590 3787 7.158021 AGCGGAATTTTCATCATGGTTTTAAA 58.842 30.769 0.00 0.00 0.00 1.52
3591 3788 7.823799 AGCGGAATTTTCATCATGGTTTTAAAT 59.176 29.630 0.00 0.00 0.00 1.40
3592 3789 9.092876 GCGGAATTTTCATCATGGTTTTAAATA 57.907 29.630 0.00 0.00 0.00 1.40
3596 3793 8.647143 ATTTTCATCATGGTTTTAAATAGCCG 57.353 30.769 0.00 0.00 0.00 5.52
3597 3794 5.766150 TCATCATGGTTTTAAATAGCCGG 57.234 39.130 0.00 0.00 0.00 6.13
3598 3795 4.037446 TCATCATGGTTTTAAATAGCCGGC 59.963 41.667 21.89 21.89 0.00 6.13
3599 3796 2.691011 TCATGGTTTTAAATAGCCGGCC 59.309 45.455 26.15 5.07 0.00 6.13
3600 3797 2.217510 TGGTTTTAAATAGCCGGCCA 57.782 45.000 26.15 11.15 0.00 5.36
3601 3798 2.741145 TGGTTTTAAATAGCCGGCCAT 58.259 42.857 26.15 13.68 0.00 4.40
3602 3799 3.899726 TGGTTTTAAATAGCCGGCCATA 58.100 40.909 26.15 10.92 0.00 2.74
3603 3800 3.886505 TGGTTTTAAATAGCCGGCCATAG 59.113 43.478 26.15 0.00 0.00 2.23
3604 3801 3.305131 GGTTTTAAATAGCCGGCCATAGC 60.305 47.826 26.15 5.30 38.76 2.97
3605 3802 3.502123 TTTAAATAGCCGGCCATAGCT 57.498 42.857 26.15 15.50 43.20 3.32
3606 3803 3.502123 TTAAATAGCCGGCCATAGCTT 57.498 42.857 26.15 9.28 40.56 3.74
3607 3804 1.897560 AAATAGCCGGCCATAGCTTC 58.102 50.000 26.15 0.00 40.56 3.86
3608 3805 0.320771 AATAGCCGGCCATAGCTTCG 60.321 55.000 26.15 0.00 40.56 3.79
3609 3806 2.788191 ATAGCCGGCCATAGCTTCGC 62.788 60.000 26.15 0.00 40.56 4.70
3610 3807 4.918201 GCCGGCCATAGCTTCGCT 62.918 66.667 18.11 0.00 43.41 4.93
3611 3808 2.734591 CCGGCCATAGCTTCGCTA 59.265 61.111 2.24 0.00 45.55 4.26
3620 3817 1.996798 TAGCTTCGCTATAGCCCACT 58.003 50.000 19.00 13.02 40.44 4.00
3621 3818 1.996798 AGCTTCGCTATAGCCCACTA 58.003 50.000 19.00 0.00 36.99 2.74
3622 3819 2.530701 AGCTTCGCTATAGCCCACTAT 58.469 47.619 19.00 0.00 42.00 2.12
3623 3820 3.698289 AGCTTCGCTATAGCCCACTATA 58.302 45.455 19.00 0.00 39.81 1.31
3634 3831 4.143986 AGCCCACTATAGTCTTTTCAGC 57.856 45.455 1.26 0.00 0.00 4.26
3635 3832 3.519510 AGCCCACTATAGTCTTTTCAGCA 59.480 43.478 1.26 0.00 0.00 4.41
3636 3833 3.873952 GCCCACTATAGTCTTTTCAGCAG 59.126 47.826 1.26 0.00 0.00 4.24
3637 3834 4.446371 CCCACTATAGTCTTTTCAGCAGG 58.554 47.826 1.26 0.00 0.00 4.85
3638 3835 4.446371 CCACTATAGTCTTTTCAGCAGGG 58.554 47.826 1.26 0.00 0.00 4.45
3639 3836 4.080863 CCACTATAGTCTTTTCAGCAGGGT 60.081 45.833 1.26 0.00 0.00 4.34
3640 3837 4.872691 CACTATAGTCTTTTCAGCAGGGTG 59.127 45.833 1.26 0.00 0.00 4.61
3641 3838 2.185004 TAGTCTTTTCAGCAGGGTGC 57.815 50.000 0.00 0.00 45.46 5.01
3642 3839 0.538287 AGTCTTTTCAGCAGGGTGCC 60.538 55.000 0.00 0.00 46.52 5.01
3643 3840 1.600636 TCTTTTCAGCAGGGTGCCG 60.601 57.895 0.00 0.00 46.52 5.69
3644 3841 3.273080 CTTTTCAGCAGGGTGCCGC 62.273 63.158 0.00 0.00 46.52 6.53
3645 3842 3.790416 TTTTCAGCAGGGTGCCGCT 62.790 57.895 0.00 0.00 46.52 5.52
3646 3843 2.404566 TTTTCAGCAGGGTGCCGCTA 62.405 55.000 0.00 0.00 46.52 4.26
3647 3844 2.404566 TTTCAGCAGGGTGCCGCTAA 62.405 55.000 0.00 0.00 46.52 3.09
3648 3845 2.359850 CAGCAGGGTGCCGCTAAA 60.360 61.111 0.00 0.00 46.52 1.85
3649 3846 1.750399 CAGCAGGGTGCCGCTAAAT 60.750 57.895 0.00 0.00 46.52 1.40
3650 3847 1.750399 AGCAGGGTGCCGCTAAATG 60.750 57.895 0.00 0.00 46.52 2.32
3651 3848 2.774799 GCAGGGTGCCGCTAAATGG 61.775 63.158 0.00 0.00 37.42 3.16
3652 3849 1.378514 CAGGGTGCCGCTAAATGGT 60.379 57.895 0.00 0.00 0.00 3.55
3653 3850 0.965363 CAGGGTGCCGCTAAATGGTT 60.965 55.000 0.00 0.00 0.00 3.67
3654 3851 0.251608 AGGGTGCCGCTAAATGGTTT 60.252 50.000 0.00 0.00 0.00 3.27
3655 3852 0.172578 GGGTGCCGCTAAATGGTTTC 59.827 55.000 0.00 0.00 0.00 2.78
3656 3853 0.172578 GGTGCCGCTAAATGGTTTCC 59.827 55.000 0.00 0.00 0.00 3.13
3657 3854 1.173913 GTGCCGCTAAATGGTTTCCT 58.826 50.000 0.00 0.00 0.00 3.36
3658 3855 1.544246 GTGCCGCTAAATGGTTTCCTT 59.456 47.619 0.00 0.00 0.00 3.36
3659 3856 1.816224 TGCCGCTAAATGGTTTCCTTC 59.184 47.619 0.00 0.00 0.00 3.46
3660 3857 1.816224 GCCGCTAAATGGTTTCCTTCA 59.184 47.619 0.00 0.00 0.00 3.02
3661 3858 2.415491 GCCGCTAAATGGTTTCCTTCAC 60.415 50.000 0.00 0.00 0.00 3.18
3662 3859 2.817258 CCGCTAAATGGTTTCCTTCACA 59.183 45.455 0.00 0.00 0.00 3.58
3663 3860 3.254657 CCGCTAAATGGTTTCCTTCACAA 59.745 43.478 0.00 0.00 0.00 3.33
3664 3861 4.261825 CCGCTAAATGGTTTCCTTCACAAA 60.262 41.667 0.00 0.00 0.00 2.83
3665 3862 5.469479 CGCTAAATGGTTTCCTTCACAAAT 58.531 37.500 0.00 0.00 0.00 2.32
3666 3863 6.349777 CCGCTAAATGGTTTCCTTCACAAATA 60.350 38.462 0.00 0.00 0.00 1.40
3667 3864 6.747280 CGCTAAATGGTTTCCTTCACAAATAG 59.253 38.462 0.00 0.00 0.00 1.73
3668 3865 6.531594 GCTAAATGGTTTCCTTCACAAATAGC 59.468 38.462 0.00 0.00 0.00 2.97
3669 3866 5.405935 AATGGTTTCCTTCACAAATAGCC 57.594 39.130 0.00 0.00 0.00 3.93
3670 3867 3.161866 TGGTTTCCTTCACAAATAGCCC 58.838 45.455 0.00 0.00 0.00 5.19
3671 3868 2.163613 GGTTTCCTTCACAAATAGCCCG 59.836 50.000 0.00 0.00 0.00 6.13
3672 3869 1.459450 TTCCTTCACAAATAGCCCGC 58.541 50.000 0.00 0.00 0.00 6.13
3673 3870 0.618458 TCCTTCACAAATAGCCCGCT 59.382 50.000 0.00 0.00 0.00 5.52
3674 3871 1.834896 TCCTTCACAAATAGCCCGCTA 59.165 47.619 0.00 0.00 0.00 4.26
3675 3872 2.438021 TCCTTCACAAATAGCCCGCTAT 59.562 45.455 3.31 3.31 40.63 2.97
3676 3873 3.644265 TCCTTCACAAATAGCCCGCTATA 59.356 43.478 9.56 0.00 38.20 1.31
3677 3874 3.997021 CCTTCACAAATAGCCCGCTATAG 59.003 47.826 9.56 8.22 38.20 1.31
3678 3875 3.040147 TCACAAATAGCCCGCTATAGC 57.960 47.619 15.09 15.09 38.20 2.97
3679 3876 2.076863 CACAAATAGCCCGCTATAGCC 58.923 52.381 19.00 5.28 38.20 3.93
3680 3877 1.978580 ACAAATAGCCCGCTATAGCCT 59.021 47.619 19.00 12.46 38.20 4.58
3681 3878 2.289694 ACAAATAGCCCGCTATAGCCTG 60.290 50.000 19.00 11.03 38.20 4.85
3682 3879 0.250513 AATAGCCCGCTATAGCCTGC 59.749 55.000 19.00 19.65 38.20 4.85
3683 3880 0.616111 ATAGCCCGCTATAGCCTGCT 60.616 55.000 28.43 28.43 43.69 4.24
3684 3881 0.039180 TAGCCCGCTATAGCCTGCTA 59.961 55.000 26.87 26.87 42.16 3.49
3685 3882 0.616111 AGCCCGCTATAGCCTGCTAT 60.616 55.000 25.96 15.41 40.93 2.97
3686 3883 1.112113 GCCCGCTATAGCCTGCTATA 58.888 55.000 19.00 15.94 39.65 1.31
3696 3893 3.137446 AGCCTGCTATAGCTGATTTGG 57.863 47.619 27.67 18.16 41.71 3.28
3697 3894 2.707791 AGCCTGCTATAGCTGATTTGGA 59.292 45.455 27.67 5.22 41.71 3.53
3698 3895 3.072944 GCCTGCTATAGCTGATTTGGAG 58.927 50.000 27.67 13.71 41.71 3.86
3699 3896 3.672808 CCTGCTATAGCTGATTTGGAGG 58.327 50.000 27.67 18.13 41.71 4.30
3700 3897 3.072184 CCTGCTATAGCTGATTTGGAGGT 59.928 47.826 27.67 0.00 41.71 3.85
3701 3898 4.314121 CTGCTATAGCTGATTTGGAGGTC 58.686 47.826 24.61 0.00 41.71 3.85
3702 3899 3.071602 TGCTATAGCTGATTTGGAGGTCC 59.928 47.826 24.61 0.00 42.66 4.46
3703 3900 2.918712 ATAGCTGATTTGGAGGTCCG 57.081 50.000 0.00 0.00 39.43 4.79
3704 3901 1.568504 TAGCTGATTTGGAGGTCCGT 58.431 50.000 0.00 0.00 39.43 4.69
3705 3902 0.250513 AGCTGATTTGGAGGTCCGTC 59.749 55.000 0.00 0.00 39.43 4.79
3706 3903 1.084370 GCTGATTTGGAGGTCCGTCG 61.084 60.000 0.00 0.00 39.43 5.12
3707 3904 1.079405 TGATTTGGAGGTCCGTCGC 60.079 57.895 0.00 0.00 39.43 5.19
3708 3905 1.218316 GATTTGGAGGTCCGTCGCT 59.782 57.895 0.00 0.00 39.43 4.93
3709 3906 0.458669 GATTTGGAGGTCCGTCGCTA 59.541 55.000 0.00 0.00 39.43 4.26
3710 3907 1.068741 GATTTGGAGGTCCGTCGCTAT 59.931 52.381 0.00 0.00 39.43 2.97
3711 3908 0.899720 TTTGGAGGTCCGTCGCTATT 59.100 50.000 0.00 0.00 39.43 1.73
3712 3909 0.899720 TTGGAGGTCCGTCGCTATTT 59.100 50.000 0.00 0.00 39.43 1.40
3713 3910 0.899720 TGGAGGTCCGTCGCTATTTT 59.100 50.000 0.00 0.00 39.43 1.82
3714 3911 1.134907 TGGAGGTCCGTCGCTATTTTC 60.135 52.381 0.00 0.00 39.43 2.29
3715 3912 1.568606 GAGGTCCGTCGCTATTTTCC 58.431 55.000 0.00 0.00 0.00 3.13
3716 3913 0.899720 AGGTCCGTCGCTATTTTCCA 59.100 50.000 0.00 0.00 0.00 3.53
3717 3914 1.485066 AGGTCCGTCGCTATTTTCCAT 59.515 47.619 0.00 0.00 0.00 3.41
3718 3915 2.696707 AGGTCCGTCGCTATTTTCCATA 59.303 45.455 0.00 0.00 0.00 2.74
3719 3916 3.057734 GGTCCGTCGCTATTTTCCATAG 58.942 50.000 0.00 0.00 0.00 2.23
3720 3917 2.475487 GTCCGTCGCTATTTTCCATAGC 59.525 50.000 4.08 4.08 42.53 2.97
3721 3918 1.798813 CCGTCGCTATTTTCCATAGCC 59.201 52.381 8.01 0.00 42.89 3.93
3722 3919 1.798813 CGTCGCTATTTTCCATAGCCC 59.201 52.381 8.01 0.00 42.89 5.19
3723 3920 2.805295 CGTCGCTATTTTCCATAGCCCA 60.805 50.000 8.01 0.00 42.89 5.36
3724 3921 2.548480 GTCGCTATTTTCCATAGCCCAC 59.452 50.000 8.01 2.64 42.89 4.61
3725 3922 2.171659 TCGCTATTTTCCATAGCCCACA 59.828 45.455 8.01 0.00 42.89 4.17
3726 3923 2.948979 CGCTATTTTCCATAGCCCACAA 59.051 45.455 8.01 0.00 42.89 3.33
3727 3924 3.569701 CGCTATTTTCCATAGCCCACAAT 59.430 43.478 8.01 0.00 42.89 2.71
3728 3925 4.037923 CGCTATTTTCCATAGCCCACAATT 59.962 41.667 8.01 0.00 42.89 2.32
3729 3926 5.451798 CGCTATTTTCCATAGCCCACAATTT 60.452 40.000 8.01 0.00 42.89 1.82
3730 3927 6.238897 CGCTATTTTCCATAGCCCACAATTTA 60.239 38.462 8.01 0.00 42.89 1.40
3731 3928 7.496747 GCTATTTTCCATAGCCCACAATTTAA 58.503 34.615 2.88 0.00 40.69 1.52
3732 3929 7.984617 GCTATTTTCCATAGCCCACAATTTAAA 59.015 33.333 2.88 0.00 40.69 1.52
3733 3930 9.883142 CTATTTTCCATAGCCCACAATTTAAAA 57.117 29.630 0.00 0.00 0.00 1.52
3964 4161 7.330262 ACAATCTTTGTTTCATGTTTCCAGTT 58.670 30.769 0.00 0.00 42.22 3.16
3999 4196 6.151144 CCTAGGTACCCAACAATTTTCTCAAG 59.849 42.308 8.74 0.00 0.00 3.02
4131 4330 7.495606 TGGATTATATATGCTACTGGATTTGCG 59.504 37.037 0.00 0.00 0.00 4.85
4142 4341 5.329035 ACTGGATTTGCGCTTAATGAATT 57.671 34.783 9.73 0.00 0.00 2.17
4143 4342 6.449635 ACTGGATTTGCGCTTAATGAATTA 57.550 33.333 9.73 0.00 0.00 1.40
4144 4343 6.265577 ACTGGATTTGCGCTTAATGAATTAC 58.734 36.000 9.73 0.00 0.00 1.89
4295 4500 7.166167 TGAGGTCAGTTTTAATTAGAACTCCC 58.834 38.462 16.34 17.32 41.23 4.30
4296 4501 7.017254 TGAGGTCAGTTTTAATTAGAACTCCCT 59.983 37.037 23.57 23.57 41.23 4.20
4377 4586 3.076621 CCTTCACAATACTGCTTGCAGA 58.923 45.455 26.71 12.24 0.00 4.26
4378 4587 3.126514 CCTTCACAATACTGCTTGCAGAG 59.873 47.826 26.71 15.57 0.00 3.35
4406 4615 5.959512 AGAACTAGTGAGATATAGCAGGGT 58.040 41.667 0.00 0.00 0.00 4.34
4419 4628 8.598041 AGATATAGCAGGGTCGAAAATAAGAAT 58.402 33.333 0.00 0.00 0.00 2.40
4492 4705 5.091431 GGTATGACATAACGCGTATACCTC 58.909 45.833 27.60 14.87 37.88 3.85
4640 4853 3.194755 TGGCTGCTAAGAACGTAAGATCA 59.805 43.478 0.00 0.00 42.28 2.92
4644 4857 6.479001 GGCTGCTAAGAACGTAAGATCAATAA 59.521 38.462 0.00 0.00 42.28 1.40
4653 4866 7.711339 AGAACGTAAGATCAATAAGTCCATTCC 59.289 37.037 0.00 0.00 42.28 3.01
4654 4867 6.289064 ACGTAAGATCAATAAGTCCATTCCC 58.711 40.000 0.00 0.00 43.62 3.97
4734 4947 1.212375 ATCCCATTGATCACACCCGA 58.788 50.000 0.00 0.00 0.00 5.14
4735 4948 1.212375 TCCCATTGATCACACCCGAT 58.788 50.000 0.00 0.00 0.00 4.18
5027 5240 1.317431 GGCATCACAAGCATGCTGGA 61.317 55.000 29.07 21.88 45.18 3.86
5133 5346 4.023128 CATAAGCGCACGCGTTTAATTTA 58.977 39.130 21.47 5.73 45.15 1.40
5158 5371 1.226746 GGTTACTTCGTTGCTGCTGT 58.773 50.000 0.00 0.00 0.00 4.40
5296 5509 2.376181 TGGCTGTATATCATGCATGGGT 59.624 45.455 25.97 17.07 0.00 4.51
5297 5510 3.181430 TGGCTGTATATCATGCATGGGTT 60.181 43.478 25.97 13.74 0.00 4.11
5298 5511 4.042684 TGGCTGTATATCATGCATGGGTTA 59.957 41.667 25.97 15.34 0.00 2.85
5299 5512 4.396166 GGCTGTATATCATGCATGGGTTAC 59.604 45.833 25.97 21.52 0.00 2.50
5300 5513 5.003160 GCTGTATATCATGCATGGGTTACA 58.997 41.667 25.97 24.15 0.00 2.41
5301 5514 5.122869 GCTGTATATCATGCATGGGTTACAG 59.877 44.000 32.33 32.33 37.09 2.74
5302 5515 6.432403 TGTATATCATGCATGGGTTACAGA 57.568 37.500 25.97 4.85 0.00 3.41
5303 5516 6.230472 TGTATATCATGCATGGGTTACAGAC 58.770 40.000 25.97 13.29 0.00 3.51
5537 6617 6.877322 TGAGAAATAAGGTTACTAGTTGCACC 59.123 38.462 0.00 5.58 0.00 5.01
5586 6666 5.886960 ATTTGTCAAAGATAGTGCTCCAC 57.113 39.130 4.03 0.00 34.10 4.02
5665 6745 4.718940 ATACAAGGCACATTTGTTAGGC 57.281 40.909 0.00 0.00 39.36 3.93
5690 6770 5.689383 TTTCTGCTTTCTGTTATGGACAC 57.311 39.130 0.00 0.00 33.82 3.67
5699 6779 7.710907 GCTTTCTGTTATGGACACACTGATATA 59.289 37.037 0.00 0.00 33.82 0.86
5702 6782 8.712228 TCTGTTATGGACACACTGATATAGAT 57.288 34.615 0.00 0.00 33.82 1.98
5703 6783 9.807921 TCTGTTATGGACACACTGATATAGATA 57.192 33.333 0.00 0.00 33.82 1.98
5758 6838 6.739331 TTGTCAGTGATTAAACCCCAAAAT 57.261 33.333 0.00 0.00 0.00 1.82
5767 6847 9.332502 GTGATTAAACCCCAAAATTTACTTGTT 57.667 29.630 0.00 0.00 0.00 2.83
5797 6877 5.867174 GTGGTACTTAAATTGGACCATTTGC 59.133 40.000 1.88 0.00 41.98 3.68
5879 6960 7.523709 GCAAAAGAGGACCATTTCAGATGTTTA 60.524 37.037 0.00 0.00 0.00 2.01
5881 6962 7.636150 AAGAGGACCATTTCAGATGTTTATG 57.364 36.000 0.00 0.00 0.00 1.90
5948 7029 4.526970 CCACAGCCACAAAGTATATTCCT 58.473 43.478 0.00 0.00 0.00 3.36
5957 7038 7.231722 GCCACAAAGTATATTCCTCTCTCTCTA 59.768 40.741 0.00 0.00 0.00 2.43
5989 7092 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
5990 7093 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
5991 7094 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
5992 7095 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
5993 7096 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5994 7097 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5995 7098 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5996 7099 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5997 7100 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
5998 7101 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
5999 7102 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6000 7103 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6001 7104 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6002 7105 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6003 7106 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6004 7107 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6005 7108 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6006 7109 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6007 7110 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.003223 GTTACGCTGTTGTTTTCGCCT 60.003 47.619 0.00 0.00 0.00 5.52
75 76 0.660488 ACATTGCACGAAACGCTGAA 59.340 45.000 0.00 0.00 0.00 3.02
137 140 0.249031 TATGAGTGTGATCGCCTGCG 60.249 55.000 4.92 4.92 41.35 5.18
195 198 1.529065 CGCATCACGTATGGTCGTCG 61.529 60.000 0.00 0.00 42.27 5.12
216 219 4.094684 CGAGACTTGTCCATCGGC 57.905 61.111 5.02 0.00 0.00 5.54
282 285 4.525487 ACTTGAGTAGTTTGACCCGACATA 59.475 41.667 0.00 0.00 31.29 2.29
346 349 5.177326 GTCGATCTATCTATCGGTGTAGGT 58.823 45.833 6.42 0.00 46.81 3.08
376 379 0.100146 GACTACGACTACCCGGCTTG 59.900 60.000 0.00 0.00 0.00 4.01
518 521 1.709578 CCTCCATCCTAGCTGCTACA 58.290 55.000 5.02 0.00 0.00 2.74
572 581 2.668550 GGAACTGTCACACCCCGC 60.669 66.667 0.00 0.00 0.00 6.13
671 680 1.507141 AAAGTTGCCCGAGACAAGCG 61.507 55.000 0.00 0.00 0.00 4.68
816 827 1.761780 AAGAAGGTGGAGGAGGGGGA 61.762 60.000 0.00 0.00 0.00 4.81
853 864 1.722851 AGGGTGGGAGGTAGAAGAAGA 59.277 52.381 0.00 0.00 0.00 2.87
854 865 2.112190 GAGGGTGGGAGGTAGAAGAAG 58.888 57.143 0.00 0.00 0.00 2.85
855 866 1.273666 GGAGGGTGGGAGGTAGAAGAA 60.274 57.143 0.00 0.00 0.00 2.52
856 867 0.338814 GGAGGGTGGGAGGTAGAAGA 59.661 60.000 0.00 0.00 0.00 2.87
857 868 0.340208 AGGAGGGTGGGAGGTAGAAG 59.660 60.000 0.00 0.00 0.00 2.85
858 869 1.290130 GTAGGAGGGTGGGAGGTAGAA 59.710 57.143 0.00 0.00 0.00 2.10
859 870 0.932211 GTAGGAGGGTGGGAGGTAGA 59.068 60.000 0.00 0.00 0.00 2.59
860 871 0.105607 GGTAGGAGGGTGGGAGGTAG 60.106 65.000 0.00 0.00 0.00 3.18
861 872 1.596955 GGGTAGGAGGGTGGGAGGTA 61.597 65.000 0.00 0.00 0.00 3.08
913 924 4.749310 AGAGTGAGCTTGGGCGCG 62.749 66.667 0.00 0.00 44.37 6.86
1177 1191 1.038130 TCCTACTCTCCCTTGCGAGC 61.038 60.000 0.00 0.00 0.00 5.03
1279 1296 1.129326 GAGCTGTACACACGACACAC 58.871 55.000 0.00 0.00 0.00 3.82
1512 1529 2.514160 AGAACAAAGAAAGAGGGGGTGT 59.486 45.455 0.00 0.00 0.00 4.16
1559 1576 2.902343 GCATGGCGCTACTTCCCC 60.902 66.667 7.64 0.00 37.77 4.81
1563 1580 1.750399 CCCTTGCATGGCGCTACTT 60.750 57.895 13.15 0.00 43.06 2.24
1607 1624 7.914871 TCACACAATGACATAAACTGAAAACTG 59.085 33.333 0.00 0.00 29.99 3.16
1608 1625 7.995289 TCACACAATGACATAAACTGAAAACT 58.005 30.769 0.00 0.00 29.99 2.66
1609 1626 8.801715 ATCACACAATGACATAAACTGAAAAC 57.198 30.769 0.00 0.00 41.24 2.43
1610 1627 9.247126 CAATCACACAATGACATAAACTGAAAA 57.753 29.630 0.00 0.00 41.24 2.29
1611 1628 8.628280 TCAATCACACAATGACATAAACTGAAA 58.372 29.630 0.00 0.00 41.24 2.69
1612 1629 8.164058 TCAATCACACAATGACATAAACTGAA 57.836 30.769 0.00 0.00 41.24 3.02
1613 1630 7.742556 TCAATCACACAATGACATAAACTGA 57.257 32.000 0.00 0.00 41.24 3.41
1909 1926 8.618240 TTTCTCTCCCCTCATAACAAGTATAA 57.382 34.615 0.00 0.00 0.00 0.98
1913 1930 4.846940 ACTTTCTCTCCCCTCATAACAAGT 59.153 41.667 0.00 0.00 0.00 3.16
1926 1943 4.985538 TCGTCCTCATTACTTTCTCTCC 57.014 45.455 0.00 0.00 0.00 3.71
2005 2024 2.267426 CATGCTCCACGACACGATTTA 58.733 47.619 0.00 0.00 0.00 1.40
2007 2026 0.740868 CCATGCTCCACGACACGATT 60.741 55.000 0.00 0.00 0.00 3.34
2008 2027 1.153568 CCATGCTCCACGACACGAT 60.154 57.895 0.00 0.00 0.00 3.73
2009 2028 2.261361 CCATGCTCCACGACACGA 59.739 61.111 0.00 0.00 0.00 4.35
2010 2029 3.490759 GCCATGCTCCACGACACG 61.491 66.667 0.00 0.00 0.00 4.49
2011 2030 3.490759 CGCCATGCTCCACGACAC 61.491 66.667 0.00 0.00 0.00 3.67
2012 2031 4.002506 ACGCCATGCTCCACGACA 62.003 61.111 0.00 0.00 0.00 4.35
2013 2032 3.490759 CACGCCATGCTCCACGAC 61.491 66.667 0.00 0.00 0.00 4.34
2118 2137 1.202580 AGAGAGAGAGAGAGAGAGCGC 60.203 57.143 0.00 0.00 0.00 5.92
2120 2139 2.224402 GGGAGAGAGAGAGAGAGAGAGC 60.224 59.091 0.00 0.00 0.00 4.09
2271 2356 2.159142 GCTTCTGCATGCTGCCTTAAAT 60.159 45.455 20.33 0.00 44.23 1.40
2379 2465 7.335673 TGAATGCATCTCCTTTCAAAATACGTA 59.664 33.333 0.00 0.00 0.00 3.57
2380 2466 6.150976 TGAATGCATCTCCTTTCAAAATACGT 59.849 34.615 0.00 0.00 0.00 3.57
2381 2467 6.554419 TGAATGCATCTCCTTTCAAAATACG 58.446 36.000 0.00 0.00 0.00 3.06
2382 2468 8.937634 AATGAATGCATCTCCTTTCAAAATAC 57.062 30.769 0.00 0.00 34.09 1.89
2409 2495 6.769822 AGATCTTCACGAGCCATCAAAAATAT 59.230 34.615 0.00 0.00 0.00 1.28
2412 2498 4.326826 AGATCTTCACGAGCCATCAAAAA 58.673 39.130 0.00 0.00 0.00 1.94
2510 2596 2.546778 ACAGCCGGAAATATGTGTACG 58.453 47.619 5.05 0.00 0.00 3.67
2623 2709 5.176958 TGAAGTTTCTTGCTACTTACGCTTC 59.823 40.000 0.00 0.00 34.88 3.86
2835 2921 0.396556 TGTAGGCAGATGGTAGGCGA 60.397 55.000 0.00 0.00 35.18 5.54
2943 3029 5.633830 AACCAGACAGCATAAATTCTGTG 57.366 39.130 0.00 0.00 42.97 3.66
2947 3033 8.897752 AGAGAATAAACCAGACAGCATAAATTC 58.102 33.333 0.00 0.00 0.00 2.17
3016 3167 7.165485 TGTATAGTAAAAATCCATGGATCCCG 58.835 38.462 27.45 0.00 33.08 5.14
3044 3195 8.879759 GTGATGACATAAAATATATGGGGTACG 58.120 37.037 0.00 0.00 0.00 3.67
3062 3213 8.783093 CAAATAAACTCCTAACTTGTGATGACA 58.217 33.333 0.00 0.00 0.00 3.58
3150 3301 8.122952 CCACTGGAAACGACTCATTAATAATTC 58.877 37.037 0.00 0.00 0.00 2.17
3364 3515 8.343366 GCACCTTTACTAATTAATAAGCCAGAC 58.657 37.037 0.00 0.00 0.00 3.51
3448 3645 1.204146 GCCATCTCACCTAGGTTCCA 58.796 55.000 13.15 0.00 0.00 3.53
3455 3652 9.739276 CCTAATAATTAAATGCCATCTCACCTA 57.261 33.333 0.00 0.00 0.00 3.08
3534 3731 9.233232 CCGGCTATTTAAAACTATGATGAAAAC 57.767 33.333 0.00 0.00 0.00 2.43
3535 3732 7.918562 GCCGGCTATTTAAAACTATGATGAAAA 59.081 33.333 22.15 0.00 0.00 2.29
3536 3733 7.284489 AGCCGGCTATTTAAAACTATGATGAAA 59.716 33.333 31.86 0.00 0.00 2.69
3537 3734 6.770785 AGCCGGCTATTTAAAACTATGATGAA 59.229 34.615 31.86 0.00 0.00 2.57
3538 3735 6.296026 AGCCGGCTATTTAAAACTATGATGA 58.704 36.000 31.86 0.00 0.00 2.92
3539 3736 6.560253 AGCCGGCTATTTAAAACTATGATG 57.440 37.500 31.86 0.00 0.00 3.07
3540 3737 9.601217 CTATAGCCGGCTATTTAAAACTATGAT 57.399 33.333 44.65 25.13 39.65 2.45
3541 3738 7.548075 GCTATAGCCGGCTATTTAAAACTATGA 59.452 37.037 44.65 25.48 39.65 2.15
3542 3739 7.464178 CGCTATAGCCGGCTATTTAAAACTATG 60.464 40.741 44.65 24.19 39.65 2.23
3543 3740 6.534079 CGCTATAGCCGGCTATTTAAAACTAT 59.466 38.462 44.65 26.21 39.65 2.12
3544 3741 5.865552 CGCTATAGCCGGCTATTTAAAACTA 59.134 40.000 44.65 27.23 39.65 2.24
3545 3742 4.689345 CGCTATAGCCGGCTATTTAAAACT 59.311 41.667 44.65 26.62 39.65 2.66
3546 3743 4.142966 CCGCTATAGCCGGCTATTTAAAAC 60.143 45.833 44.65 27.74 39.65 2.43
3547 3744 3.998341 CCGCTATAGCCGGCTATTTAAAA 59.002 43.478 44.65 29.19 39.65 1.52
3548 3745 3.258872 TCCGCTATAGCCGGCTATTTAAA 59.741 43.478 44.65 29.52 39.65 1.52
3549 3746 2.827322 TCCGCTATAGCCGGCTATTTAA 59.173 45.455 44.65 29.85 39.65 1.52
3550 3747 2.449464 TCCGCTATAGCCGGCTATTTA 58.551 47.619 44.65 30.51 39.65 1.40
3551 3748 1.263356 TCCGCTATAGCCGGCTATTT 58.737 50.000 44.65 30.05 39.65 1.40
3552 3749 1.263356 TTCCGCTATAGCCGGCTATT 58.737 50.000 44.65 30.54 39.65 1.73
3553 3750 1.486211 ATTCCGCTATAGCCGGCTAT 58.514 50.000 42.09 42.09 41.58 2.97
3554 3751 1.263356 AATTCCGCTATAGCCGGCTA 58.737 50.000 36.88 36.88 37.91 3.93
3555 3752 0.396811 AAATTCCGCTATAGCCGGCT 59.603 50.000 34.85 34.85 37.91 5.52
3556 3753 1.197036 GAAAATTCCGCTATAGCCGGC 59.803 52.381 21.89 21.89 37.91 6.13
3557 3754 2.489971 TGAAAATTCCGCTATAGCCGG 58.510 47.619 19.00 20.84 37.91 6.13
3558 3755 3.745975 TGATGAAAATTCCGCTATAGCCG 59.254 43.478 19.00 12.70 37.91 5.52
3559 3756 5.392380 CCATGATGAAAATTCCGCTATAGCC 60.392 44.000 19.00 2.94 37.91 3.93
3560 3757 5.182001 ACCATGATGAAAATTCCGCTATAGC 59.818 40.000 15.09 15.09 37.78 2.97
3561 3758 6.808008 ACCATGATGAAAATTCCGCTATAG 57.192 37.500 0.00 0.00 0.00 1.31
3562 3759 7.581213 AAACCATGATGAAAATTCCGCTATA 57.419 32.000 0.00 0.00 0.00 1.31
3563 3760 6.469782 AAACCATGATGAAAATTCCGCTAT 57.530 33.333 0.00 0.00 0.00 2.97
3564 3761 5.913137 AAACCATGATGAAAATTCCGCTA 57.087 34.783 0.00 0.00 0.00 4.26
3565 3762 4.806640 AAACCATGATGAAAATTCCGCT 57.193 36.364 0.00 0.00 0.00 5.52
3566 3763 6.959671 TTAAAACCATGATGAAAATTCCGC 57.040 33.333 0.00 0.00 0.00 5.54
3570 3767 9.097257 CGGCTATTTAAAACCATGATGAAAATT 57.903 29.630 0.00 0.00 0.00 1.82
3571 3768 7.710475 CCGGCTATTTAAAACCATGATGAAAAT 59.290 33.333 0.00 0.00 0.00 1.82
3572 3769 7.038659 CCGGCTATTTAAAACCATGATGAAAA 58.961 34.615 0.00 0.00 0.00 2.29
3573 3770 6.568869 CCGGCTATTTAAAACCATGATGAAA 58.431 36.000 0.00 0.00 0.00 2.69
3574 3771 5.451242 GCCGGCTATTTAAAACCATGATGAA 60.451 40.000 22.15 0.00 0.00 2.57
3575 3772 4.037446 GCCGGCTATTTAAAACCATGATGA 59.963 41.667 22.15 0.00 0.00 2.92
3576 3773 4.298332 GCCGGCTATTTAAAACCATGATG 58.702 43.478 22.15 0.00 0.00 3.07
3577 3774 3.320826 GGCCGGCTATTTAAAACCATGAT 59.679 43.478 28.56 0.00 0.00 2.45
3578 3775 2.691011 GGCCGGCTATTTAAAACCATGA 59.309 45.455 28.56 0.00 0.00 3.07
3579 3776 2.428890 TGGCCGGCTATTTAAAACCATG 59.571 45.455 28.56 0.00 0.00 3.66
3580 3777 2.741145 TGGCCGGCTATTTAAAACCAT 58.259 42.857 28.56 0.00 0.00 3.55
3581 3778 2.217510 TGGCCGGCTATTTAAAACCA 57.782 45.000 28.56 8.65 0.00 3.67
3582 3779 3.305131 GCTATGGCCGGCTATTTAAAACC 60.305 47.826 31.32 7.90 0.00 3.27
3583 3780 3.568430 AGCTATGGCCGGCTATTTAAAAC 59.432 43.478 31.32 13.39 39.73 2.43
3584 3781 3.827722 AGCTATGGCCGGCTATTTAAAA 58.172 40.909 31.32 11.44 39.73 1.52
3585 3782 3.502123 AGCTATGGCCGGCTATTTAAA 57.498 42.857 31.32 11.84 39.73 1.52
3586 3783 3.408634 GAAGCTATGGCCGGCTATTTAA 58.591 45.455 31.32 12.24 37.87 1.52
3587 3784 2.611971 CGAAGCTATGGCCGGCTATTTA 60.612 50.000 31.32 13.04 37.87 1.40
3588 3785 1.878102 CGAAGCTATGGCCGGCTATTT 60.878 52.381 31.32 19.00 37.87 1.40
3589 3786 0.320771 CGAAGCTATGGCCGGCTATT 60.321 55.000 31.32 13.82 37.87 1.73
3590 3787 1.293498 CGAAGCTATGGCCGGCTAT 59.707 57.895 29.19 29.19 37.87 2.97
3591 3788 2.734591 CGAAGCTATGGCCGGCTA 59.265 61.111 28.56 23.38 37.87 3.93
3603 3800 4.035278 CTATAGTGGGCTATAGCGAAGC 57.965 50.000 18.30 8.56 45.68 3.86
3610 3807 6.553476 TGCTGAAAAGACTATAGTGGGCTATA 59.447 38.462 10.90 0.00 38.71 1.31
3611 3808 5.366768 TGCTGAAAAGACTATAGTGGGCTAT 59.633 40.000 10.90 0.00 40.69 2.97
3612 3809 4.714802 TGCTGAAAAGACTATAGTGGGCTA 59.285 41.667 10.90 0.00 0.00 3.93
3613 3810 3.519510 TGCTGAAAAGACTATAGTGGGCT 59.480 43.478 10.90 0.00 0.00 5.19
3614 3811 3.873910 TGCTGAAAAGACTATAGTGGGC 58.126 45.455 10.90 4.57 0.00 5.36
3615 3812 4.446371 CCTGCTGAAAAGACTATAGTGGG 58.554 47.826 10.90 0.00 0.00 4.61
3616 3813 4.080863 ACCCTGCTGAAAAGACTATAGTGG 60.081 45.833 10.90 3.09 0.00 4.00
3617 3814 4.872691 CACCCTGCTGAAAAGACTATAGTG 59.127 45.833 10.90 0.00 0.00 2.74
3618 3815 4.624125 GCACCCTGCTGAAAAGACTATAGT 60.624 45.833 4.68 4.68 40.96 2.12
3619 3816 3.873952 GCACCCTGCTGAAAAGACTATAG 59.126 47.826 0.00 0.00 40.96 1.31
3620 3817 3.370527 GGCACCCTGCTGAAAAGACTATA 60.371 47.826 0.00 0.00 44.28 1.31
3621 3818 2.619074 GGCACCCTGCTGAAAAGACTAT 60.619 50.000 0.00 0.00 44.28 2.12
3622 3819 1.271379 GGCACCCTGCTGAAAAGACTA 60.271 52.381 0.00 0.00 44.28 2.59
3623 3820 0.538287 GGCACCCTGCTGAAAAGACT 60.538 55.000 0.00 0.00 44.28 3.24
3624 3821 1.959848 GGCACCCTGCTGAAAAGAC 59.040 57.895 0.00 0.00 44.28 3.01
3625 3822 4.500265 GGCACCCTGCTGAAAAGA 57.500 55.556 0.00 0.00 44.28 2.52
3632 3829 1.750399 CATTTAGCGGCACCCTGCT 60.750 57.895 1.45 2.32 44.28 4.24
3633 3830 2.774799 CCATTTAGCGGCACCCTGC 61.775 63.158 1.45 0.00 44.08 4.85
3634 3831 0.965363 AACCATTTAGCGGCACCCTG 60.965 55.000 1.45 0.00 0.00 4.45
3635 3832 0.251608 AAACCATTTAGCGGCACCCT 60.252 50.000 1.45 0.00 0.00 4.34
3636 3833 0.172578 GAAACCATTTAGCGGCACCC 59.827 55.000 1.45 0.00 0.00 4.61
3637 3834 0.172578 GGAAACCATTTAGCGGCACC 59.827 55.000 1.45 0.00 0.00 5.01
3638 3835 1.173913 AGGAAACCATTTAGCGGCAC 58.826 50.000 1.45 0.00 0.00 5.01
3639 3836 1.816224 GAAGGAAACCATTTAGCGGCA 59.184 47.619 1.45 0.00 0.00 5.69
3640 3837 1.816224 TGAAGGAAACCATTTAGCGGC 59.184 47.619 0.00 0.00 0.00 6.53
3641 3838 2.817258 TGTGAAGGAAACCATTTAGCGG 59.183 45.455 0.00 0.00 0.00 5.52
3642 3839 4.497473 TTGTGAAGGAAACCATTTAGCG 57.503 40.909 0.00 0.00 0.00 4.26
3643 3840 6.531594 GCTATTTGTGAAGGAAACCATTTAGC 59.468 38.462 0.00 0.00 0.00 3.09
3644 3841 7.035612 GGCTATTTGTGAAGGAAACCATTTAG 58.964 38.462 0.00 0.00 0.00 1.85
3645 3842 6.071051 GGGCTATTTGTGAAGGAAACCATTTA 60.071 38.462 0.00 0.00 0.00 1.40
3646 3843 5.279960 GGGCTATTTGTGAAGGAAACCATTT 60.280 40.000 0.00 0.00 0.00 2.32
3647 3844 4.222810 GGGCTATTTGTGAAGGAAACCATT 59.777 41.667 0.00 0.00 0.00 3.16
3648 3845 3.769300 GGGCTATTTGTGAAGGAAACCAT 59.231 43.478 0.00 0.00 0.00 3.55
3649 3846 3.161866 GGGCTATTTGTGAAGGAAACCA 58.838 45.455 0.00 0.00 0.00 3.67
3650 3847 2.163613 CGGGCTATTTGTGAAGGAAACC 59.836 50.000 0.00 0.00 0.00 3.27
3651 3848 2.415491 GCGGGCTATTTGTGAAGGAAAC 60.415 50.000 0.00 0.00 0.00 2.78
3652 3849 1.816224 GCGGGCTATTTGTGAAGGAAA 59.184 47.619 0.00 0.00 0.00 3.13
3653 3850 1.004277 AGCGGGCTATTTGTGAAGGAA 59.996 47.619 0.00 0.00 0.00 3.36
3654 3851 0.618458 AGCGGGCTATTTGTGAAGGA 59.382 50.000 0.00 0.00 0.00 3.36
3655 3852 2.325583 TAGCGGGCTATTTGTGAAGG 57.674 50.000 0.00 0.00 0.00 3.46
3656 3853 3.433615 GCTATAGCGGGCTATTTGTGAAG 59.566 47.826 17.49 9.39 39.65 3.02
3657 3854 3.399330 GCTATAGCGGGCTATTTGTGAA 58.601 45.455 17.49 0.00 39.65 3.18
3658 3855 2.289444 GGCTATAGCGGGCTATTTGTGA 60.289 50.000 18.30 0.00 43.26 3.58
3659 3856 2.076863 GGCTATAGCGGGCTATTTGTG 58.923 52.381 18.30 7.97 43.26 3.33
3660 3857 1.978580 AGGCTATAGCGGGCTATTTGT 59.021 47.619 18.30 0.00 43.26 2.83
3661 3858 2.350522 CAGGCTATAGCGGGCTATTTG 58.649 52.381 18.30 12.10 43.26 2.32
3662 3859 1.339151 GCAGGCTATAGCGGGCTATTT 60.339 52.381 24.07 0.00 43.26 1.40
3663 3860 0.250513 GCAGGCTATAGCGGGCTATT 59.749 55.000 24.07 3.74 43.26 1.73
3664 3861 0.616111 AGCAGGCTATAGCGGGCTAT 60.616 55.000 29.48 16.61 45.07 2.97
3665 3862 0.039180 TAGCAGGCTATAGCGGGCTA 59.961 55.000 29.97 29.97 45.07 3.93
3666 3863 2.525381 AGCAGGCTATAGCGGGCT 60.525 61.111 26.81 26.81 43.17 5.19
3667 3864 1.067821 CTATAGCAGGCTATAGCGGGC 59.932 57.143 26.57 23.98 46.26 6.13
3673 3870 5.721480 TCCAAATCAGCTATAGCAGGCTATA 59.279 40.000 26.07 17.48 45.16 1.31
3674 3871 4.533707 TCCAAATCAGCTATAGCAGGCTAT 59.466 41.667 26.07 17.12 45.16 2.97
3675 3872 3.903714 TCCAAATCAGCTATAGCAGGCTA 59.096 43.478 26.07 3.11 45.16 3.93
3676 3873 2.707791 TCCAAATCAGCTATAGCAGGCT 59.292 45.455 26.07 7.18 45.16 4.58
3677 3874 3.072944 CTCCAAATCAGCTATAGCAGGC 58.927 50.000 26.07 0.08 45.16 4.85
3678 3875 3.072184 ACCTCCAAATCAGCTATAGCAGG 59.928 47.826 26.07 21.22 45.16 4.85
3679 3876 4.314121 GACCTCCAAATCAGCTATAGCAG 58.686 47.826 26.07 18.60 45.16 4.24
3680 3877 3.071602 GGACCTCCAAATCAGCTATAGCA 59.928 47.826 26.07 7.38 38.72 3.49
3681 3878 3.669536 GGACCTCCAAATCAGCTATAGC 58.330 50.000 17.33 17.33 37.35 2.97
3682 3879 3.322254 ACGGACCTCCAAATCAGCTATAG 59.678 47.826 0.00 0.00 35.14 1.31
3683 3880 3.305720 ACGGACCTCCAAATCAGCTATA 58.694 45.455 0.00 0.00 35.14 1.31
3684 3881 2.103263 GACGGACCTCCAAATCAGCTAT 59.897 50.000 0.00 0.00 35.14 2.97
3685 3882 1.480954 GACGGACCTCCAAATCAGCTA 59.519 52.381 0.00 0.00 35.14 3.32
3686 3883 0.250513 GACGGACCTCCAAATCAGCT 59.749 55.000 0.00 0.00 35.14 4.24
3687 3884 1.084370 CGACGGACCTCCAAATCAGC 61.084 60.000 0.00 0.00 35.14 4.26
3688 3885 1.084370 GCGACGGACCTCCAAATCAG 61.084 60.000 0.00 0.00 35.14 2.90
3689 3886 1.079405 GCGACGGACCTCCAAATCA 60.079 57.895 0.00 0.00 35.14 2.57
3690 3887 0.458669 TAGCGACGGACCTCCAAATC 59.541 55.000 0.00 0.00 35.14 2.17
3691 3888 1.120530 ATAGCGACGGACCTCCAAAT 58.879 50.000 0.00 0.00 35.14 2.32
3692 3889 0.899720 AATAGCGACGGACCTCCAAA 59.100 50.000 0.00 0.00 35.14 3.28
3693 3890 0.899720 AAATAGCGACGGACCTCCAA 59.100 50.000 0.00 0.00 35.14 3.53
3694 3891 0.899720 AAAATAGCGACGGACCTCCA 59.100 50.000 0.00 0.00 35.14 3.86
3695 3892 1.568606 GAAAATAGCGACGGACCTCC 58.431 55.000 0.00 0.00 0.00 4.30
3696 3893 1.134907 TGGAAAATAGCGACGGACCTC 60.135 52.381 0.00 0.00 0.00 3.85
3697 3894 0.899720 TGGAAAATAGCGACGGACCT 59.100 50.000 0.00 0.00 0.00 3.85
3698 3895 1.949465 ATGGAAAATAGCGACGGACC 58.051 50.000 0.00 0.00 0.00 4.46
3699 3896 2.475487 GCTATGGAAAATAGCGACGGAC 59.525 50.000 0.00 0.00 37.79 4.79
3700 3897 2.547218 GGCTATGGAAAATAGCGACGGA 60.547 50.000 10.37 0.00 45.83 4.69
3701 3898 1.798813 GGCTATGGAAAATAGCGACGG 59.201 52.381 10.37 0.00 45.83 4.79
3702 3899 1.798813 GGGCTATGGAAAATAGCGACG 59.201 52.381 10.37 0.00 45.83 5.12
3703 3900 2.548480 GTGGGCTATGGAAAATAGCGAC 59.452 50.000 10.37 6.77 45.83 5.19
3704 3901 2.171659 TGTGGGCTATGGAAAATAGCGA 59.828 45.455 10.37 0.00 45.83 4.93
3705 3902 2.571212 TGTGGGCTATGGAAAATAGCG 58.429 47.619 10.37 0.00 45.83 4.26
3706 3903 5.535753 AATTGTGGGCTATGGAAAATAGC 57.464 39.130 8.52 8.52 44.56 2.97
3707 3904 9.883142 TTTTAAATTGTGGGCTATGGAAAATAG 57.117 29.630 0.00 0.00 0.00 1.73
3960 4157 1.247567 CCTAGGCAACAACCCAACTG 58.752 55.000 0.00 0.00 41.41 3.16
3964 4161 0.694196 GGTACCTAGGCAACAACCCA 59.306 55.000 9.30 0.00 41.41 4.51
3999 4196 5.689383 TGTTTCAATTACAGAGCAAGGAC 57.311 39.130 0.00 0.00 0.00 3.85
4142 4341 7.100068 AGGGTAAGTCCAGTAGCATATAGTA 57.900 40.000 0.00 0.00 38.11 1.82
4143 4342 5.966684 AGGGTAAGTCCAGTAGCATATAGT 58.033 41.667 0.00 0.00 38.11 2.12
4144 4343 6.919775 AAGGGTAAGTCCAGTAGCATATAG 57.080 41.667 0.00 0.00 38.11 1.31
4342 4551 4.513406 TGTGAAGGACCTACCAAGTTTT 57.487 40.909 0.00 0.00 42.04 2.43
4377 4586 7.973402 TGCTATATCTCACTAGTTCTCTCTCT 58.027 38.462 0.00 0.00 0.00 3.10
4378 4587 7.334421 CCTGCTATATCTCACTAGTTCTCTCTC 59.666 44.444 0.00 0.00 0.00 3.20
4419 4628 6.947644 ATGACTGCTTATTTATGTCATGCA 57.052 33.333 6.18 0.00 43.82 3.96
4480 4689 1.273048 TGTTGTTGGAGGTATACGCGT 59.727 47.619 19.17 19.17 0.00 6.01
4709 4922 4.381932 GGGTGTGATCAATGGGATTGTTTC 60.382 45.833 0.00 0.00 41.02 2.78
4734 4947 4.002982 CGCCCACTGCATATGTACATAAT 58.997 43.478 19.11 5.93 41.33 1.28
4735 4948 3.070302 TCGCCCACTGCATATGTACATAA 59.930 43.478 19.11 2.80 41.33 1.90
4807 5020 2.043227 GGCACTACTATTCTGGGCTCT 58.957 52.381 0.00 0.00 0.00 4.09
4890 5103 4.118410 GCAGACAGACATTCAGTATCCAG 58.882 47.826 0.00 0.00 0.00 3.86
4892 5105 4.128925 TGCAGACAGACATTCAGTATCC 57.871 45.455 0.00 0.00 0.00 2.59
5015 5228 7.859377 CAGTACTAATTAATTCCAGCATGCTTG 59.141 37.037 19.98 15.87 31.97 4.01
5059 5272 7.395489 TGATGATGATGAGCTAGCTGATAAGTA 59.605 37.037 24.99 5.97 0.00 2.24
5133 5346 3.550030 GCAGCAACGAAGTAACCAAACAT 60.550 43.478 0.00 0.00 45.00 2.71
5158 5371 3.249799 CCATCAACTTAACGACACAGCAA 59.750 43.478 0.00 0.00 0.00 3.91
5258 5471 2.557924 AGCCAAGAACAATTGCGATGAA 59.442 40.909 5.05 0.00 0.00 2.57
5296 5509 7.040961 GCAAACCAATTACCTGTAAGTCTGTAA 60.041 37.037 0.00 0.00 0.00 2.41
5297 5510 6.428771 GCAAACCAATTACCTGTAAGTCTGTA 59.571 38.462 0.00 0.00 0.00 2.74
5298 5511 5.240844 GCAAACCAATTACCTGTAAGTCTGT 59.759 40.000 0.00 0.00 0.00 3.41
5299 5512 5.240623 TGCAAACCAATTACCTGTAAGTCTG 59.759 40.000 0.00 0.00 0.00 3.51
5300 5513 5.381757 TGCAAACCAATTACCTGTAAGTCT 58.618 37.500 0.00 0.00 0.00 3.24
5301 5514 5.699097 TGCAAACCAATTACCTGTAAGTC 57.301 39.130 0.00 0.00 0.00 3.01
5302 5515 7.231722 TGTTATGCAAACCAATTACCTGTAAGT 59.768 33.333 0.00 0.00 0.00 2.24
5303 5516 7.598278 TGTTATGCAAACCAATTACCTGTAAG 58.402 34.615 0.00 0.00 0.00 2.34
5419 6183 3.724732 AAGGATAGGTACCCGCAAAAA 57.275 42.857 8.74 0.00 0.00 1.94
5420 6184 3.009253 TCAAAGGATAGGTACCCGCAAAA 59.991 43.478 8.74 0.00 0.00 2.44
5421 6185 2.572556 TCAAAGGATAGGTACCCGCAAA 59.427 45.455 8.74 0.00 0.00 3.68
5422 6186 2.189676 TCAAAGGATAGGTACCCGCAA 58.810 47.619 8.74 0.00 0.00 4.85
5424 6188 2.633481 AGATCAAAGGATAGGTACCCGC 59.367 50.000 8.74 0.00 32.67 6.13
5425 6189 4.957684 AAGATCAAAGGATAGGTACCCG 57.042 45.455 8.74 0.00 32.67 5.28
5495 6575 9.973450 TTATTTCTCAATGAAAAATCGTTCCAA 57.027 25.926 0.00 0.00 46.32 3.53
5565 6645 4.973168 AGTGGAGCACTATCTTTGACAAA 58.027 39.130 0.00 0.00 43.46 2.83
5611 6691 5.890752 AAGGTAGTATTAGCTCCTTTCCC 57.109 43.478 0.00 0.00 36.64 3.97
5639 6719 7.576856 GCCTAACAAATGTGCCTTGTATTTAGT 60.577 37.037 0.00 0.00 35.98 2.24
5665 6745 6.583806 GTGTCCATAACAGAAAGCAGAAAATG 59.416 38.462 0.00 0.00 38.97 2.32
5674 6754 9.254133 CTATATCAGTGTGTCCATAACAGAAAG 57.746 37.037 0.00 0.00 38.97 2.62
5741 6821 8.896320 ACAAGTAAATTTTGGGGTTTAATCAC 57.104 30.769 0.00 0.00 0.00 3.06
5767 6847 8.612486 TGGTCCAATTTAAGTACCACTCTATA 57.388 34.615 0.00 0.00 35.34 1.31
5797 6877 4.611943 AGTTCTGATGTTCATCGTATCCG 58.388 43.478 8.04 0.00 0.00 4.18
5812 6892 5.717178 AGCAAGAATCAGGTACTAGTTCTGA 59.283 40.000 22.48 22.48 39.38 3.27
5881 6962 3.255149 CCAGAAGAATATGCAAGATGGGC 59.745 47.826 0.00 0.00 0.00 5.36
5918 6999 1.959710 TTGTGGCTGTGGGGATAGTA 58.040 50.000 0.00 0.00 0.00 1.82
5924 7005 2.799126 TATACTTTGTGGCTGTGGGG 57.201 50.000 0.00 0.00 0.00 4.96
5948 7029 6.857848 AGAGAGAGAGAGAGATAGAGAGAGA 58.142 44.000 0.00 0.00 0.00 3.10
5957 7038 4.225942 ACACACAGAGAGAGAGAGAGAGAT 59.774 45.833 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.