Multiple sequence alignment - TraesCS4A01G058300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G058300 chr4A 100.000 2961 0 0 1 2961 49039032 49041992 0.000000e+00 5469.0
1 TraesCS4A01G058300 chr4A 92.411 672 51 0 1299 1970 49200084 49200755 0.000000e+00 959.0
2 TraesCS4A01G058300 chr4A 83.188 345 42 11 399 729 49199152 49199494 4.800000e-78 302.0
3 TraesCS4A01G058300 chr4A 82.036 334 35 9 866 1189 49199667 49199985 8.140000e-66 261.0
4 TraesCS4A01G058300 chr4B 91.198 1386 96 14 1299 2666 510562390 510561013 0.000000e+00 1860.0
5 TraesCS4A01G058300 chr4B 92.316 950 63 6 1299 2241 510481923 510480977 0.000000e+00 1341.0
6 TraesCS4A01G058300 chr4B 90.878 866 49 9 342 1188 510563343 510562489 0.000000e+00 1134.0
7 TraesCS4A01G058300 chr4B 89.486 875 51 15 342 1189 510482878 510482018 0.000000e+00 1068.0
8 TraesCS4A01G058300 chr4B 84.318 982 104 31 1299 2260 510434737 510433786 0.000000e+00 915.0
9 TraesCS4A01G058300 chr4B 81.729 509 59 22 2291 2769 510480970 510480466 7.690000e-106 394.0
10 TraesCS4A01G058300 chr4B 82.114 369 44 10 399 749 510435660 510435296 2.230000e-76 296.0
11 TraesCS4A01G058300 chr4B 84.000 300 28 7 861 1155 510435159 510434875 1.350000e-68 270.0
12 TraesCS4A01G058300 chr4B 86.740 181 23 1 2651 2830 510560999 510560819 1.800000e-47 200.0
13 TraesCS4A01G058300 chr4B 91.429 140 10 2 2823 2961 510560243 510560105 1.080000e-44 191.0
14 TraesCS4A01G058300 chr4B 91.111 90 6 2 1 89 66993311 66993223 1.440000e-23 121.0
15 TraesCS4A01G058300 chr4B 91.011 89 6 2 3 89 635015643 635015555 5.180000e-23 119.0
16 TraesCS4A01G058300 chr4B 97.297 37 1 0 1266 1302 510482033 510481997 2.460000e-06 63.9
17 TraesCS4A01G058300 chr4D 89.177 1506 119 26 1299 2769 414336945 414335449 0.000000e+00 1838.0
18 TraesCS4A01G058300 chr4D 89.222 1503 119 26 1301 2769 414365318 414363825 0.000000e+00 1838.0
19 TraesCS4A01G058300 chr4D 91.817 1222 85 7 1299 2508 414359115 414357897 0.000000e+00 1688.0
20 TraesCS4A01G058300 chr4D 89.235 994 71 15 214 1189 414366394 414365419 0.000000e+00 1210.0
21 TraesCS4A01G058300 chr4D 90.990 677 53 5 1299 1968 414328393 414327718 0.000000e+00 905.0
22 TraesCS4A01G058300 chr4D 81.764 1009 153 19 1318 2322 414349728 414348747 0.000000e+00 815.0
23 TraesCS4A01G058300 chr4D 90.446 628 37 6 572 1189 414337658 414337044 0.000000e+00 806.0
24 TraesCS4A01G058300 chr4D 89.137 313 32 2 2651 2961 414357402 414357090 3.580000e-104 388.0
25 TraesCS4A01G058300 chr4D 82.596 339 34 9 861 1189 414328815 414328492 2.910000e-70 276.0
26 TraesCS4A01G058300 chr4D 95.858 169 7 0 1021 1189 414359382 414359214 1.050000e-69 274.0
27 TraesCS4A01G058300 chr4D 81.846 325 45 6 399 709 414329348 414329024 8.140000e-66 261.0
28 TraesCS4A01G058300 chr4D 89.552 201 19 1 344 544 414337850 414337652 1.360000e-63 254.0
29 TraesCS4A01G058300 chr4D 89.634 164 12 5 2505 2666 414357576 414357416 1.390000e-48 204.0
30 TraesCS4A01G058300 chr4D 97.368 38 1 0 214 251 414338936 414338899 6.850000e-07 65.8
31 TraesCS4A01G058300 chr4D 97.297 37 1 0 1266 1302 414337059 414337023 2.460000e-06 63.9
32 TraesCS4A01G058300 chr4D 95.000 40 2 0 1266 1305 414359229 414359190 2.460000e-06 63.9
33 TraesCS4A01G058300 chr4D 97.297 37 1 0 1266 1302 414365434 414365398 2.460000e-06 63.9
34 TraesCS4A01G058300 chr6D 94.118 85 5 0 3 87 392283951 392283867 2.400000e-26 130.0
35 TraesCS4A01G058300 chr2B 92.135 89 7 0 1 89 534247514 534247426 3.100000e-25 126.0
36 TraesCS4A01G058300 chr1D 93.976 83 5 0 7 89 372565756 372565674 3.100000e-25 126.0
37 TraesCS4A01G058300 chr2D 92.045 88 6 1 3 89 524046762 524046675 4.010000e-24 122.0
38 TraesCS4A01G058300 chr3D 92.771 83 6 0 7 89 559133127 559133045 1.440000e-23 121.0
39 TraesCS4A01G058300 chr5D 91.860 86 6 1 1 86 27851347 27851263 5.180000e-23 119.0
40 TraesCS4A01G058300 chr1A 90.909 88 8 0 2 89 565110063 565110150 5.180000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G058300 chr4A 49039032 49041992 2960 False 5469.000000 5469 100.000000 1 2961 1 chr4A.!!$F1 2960
1 TraesCS4A01G058300 chr4A 49199152 49200755 1603 False 507.333333 959 85.878333 399 1970 3 chr4A.!!$F2 1571
2 TraesCS4A01G058300 chr4B 510560105 510563343 3238 True 846.250000 1860 90.061250 342 2961 4 chr4B.!!$R5 2619
3 TraesCS4A01G058300 chr4B 510480466 510482878 2412 True 716.725000 1341 90.207000 342 2769 4 chr4B.!!$R4 2427
4 TraesCS4A01G058300 chr4B 510433786 510435660 1874 True 493.666667 915 83.477333 399 2260 3 chr4B.!!$R3 1861
5 TraesCS4A01G058300 chr4D 414363825 414366394 2569 True 1037.300000 1838 91.918000 214 2769 3 chr4D.!!$R5 2555
6 TraesCS4A01G058300 chr4D 414348747 414349728 981 True 815.000000 815 81.764000 1318 2322 1 chr4D.!!$R1 1004
7 TraesCS4A01G058300 chr4D 414335449 414338936 3487 True 605.540000 1838 92.768000 214 2769 5 chr4D.!!$R3 2555
8 TraesCS4A01G058300 chr4D 414357090 414359382 2292 True 523.580000 1688 92.289200 1021 2961 5 chr4D.!!$R4 1940
9 TraesCS4A01G058300 chr4D 414327718 414329348 1630 True 480.666667 905 85.144000 399 1968 3 chr4D.!!$R2 1569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.034896 AGTCGCGTTGGAAATGTCCT 59.965 50.0 5.77 0.0 45.22 3.85 F
429 1438 0.035439 TTCTCCGGGAACAAGCCATC 60.035 55.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 3176 1.303317 GCCCAAACGTCCATCCAGT 60.303 57.895 0.0 0.0 0.00 4.00 R
2418 3708 1.906574 ACCGAAGCCAATTCTGAGGTA 59.093 47.619 0.0 0.0 35.61 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.082523 CGGATGTGTGGCCGGAGT 62.083 66.667 5.05 0.00 43.67 3.85
19 20 2.717044 CGGATGTGTGGCCGGAGTA 61.717 63.158 5.05 0.00 43.67 2.59
20 21 1.144057 GGATGTGTGGCCGGAGTAG 59.856 63.158 5.05 0.00 0.00 2.57
21 22 1.144057 GATGTGTGGCCGGAGTAGG 59.856 63.158 5.05 0.00 0.00 3.18
22 23 1.612442 ATGTGTGGCCGGAGTAGGT 60.612 57.895 5.05 0.00 0.00 3.08
23 24 1.198759 ATGTGTGGCCGGAGTAGGTT 61.199 55.000 5.05 0.00 0.00 3.50
24 25 1.373812 GTGTGGCCGGAGTAGGTTT 59.626 57.895 5.05 0.00 0.00 3.27
25 26 0.672711 GTGTGGCCGGAGTAGGTTTC 60.673 60.000 5.05 0.00 0.00 2.78
26 27 0.834687 TGTGGCCGGAGTAGGTTTCT 60.835 55.000 5.05 0.00 0.00 2.52
27 28 0.108281 GTGGCCGGAGTAGGTTTCTC 60.108 60.000 5.05 0.00 0.00 2.87
28 29 1.141234 GGCCGGAGTAGGTTTCTCG 59.859 63.158 5.05 0.00 33.26 4.04
29 30 1.141234 GCCGGAGTAGGTTTCTCGG 59.859 63.158 5.05 0.00 33.26 4.63
30 31 1.141234 CCGGAGTAGGTTTCTCGGC 59.859 63.158 0.00 0.00 33.11 5.54
31 32 1.321074 CCGGAGTAGGTTTCTCGGCT 61.321 60.000 0.00 0.00 33.11 5.52
32 33 0.531200 CGGAGTAGGTTTCTCGGCTT 59.469 55.000 0.00 0.00 33.26 4.35
33 34 1.469423 CGGAGTAGGTTTCTCGGCTTC 60.469 57.143 0.00 0.00 33.26 3.86
34 35 1.134759 GGAGTAGGTTTCTCGGCTTCC 60.135 57.143 0.00 0.00 33.26 3.46
35 36 1.549170 GAGTAGGTTTCTCGGCTTCCA 59.451 52.381 0.00 0.00 0.00 3.53
36 37 1.275573 AGTAGGTTTCTCGGCTTCCAC 59.724 52.381 0.00 0.00 0.00 4.02
37 38 0.245539 TAGGTTTCTCGGCTTCCACG 59.754 55.000 0.00 0.00 0.00 4.94
38 39 2.677979 GGTTTCTCGGCTTCCACGC 61.678 63.158 0.00 0.00 0.00 5.34
39 40 2.736995 TTTCTCGGCTTCCACGCG 60.737 61.111 3.53 3.53 0.00 6.01
40 41 4.735132 TTCTCGGCTTCCACGCGG 62.735 66.667 12.47 0.00 0.00 6.46
45 46 2.358984 GGCTTCCACGCGGGTTTA 60.359 61.111 12.47 0.00 38.11 2.01
46 47 2.396157 GGCTTCCACGCGGGTTTAG 61.396 63.158 12.47 3.95 38.11 1.85
47 48 1.670083 GCTTCCACGCGGGTTTAGT 60.670 57.895 12.47 0.00 38.11 2.24
48 49 1.908066 GCTTCCACGCGGGTTTAGTG 61.908 60.000 12.47 0.00 38.11 2.74
51 52 3.870606 CACGCGGGTTTAGTGGAG 58.129 61.111 12.47 0.00 32.68 3.86
52 53 1.740296 CACGCGGGTTTAGTGGAGG 60.740 63.158 12.47 0.00 32.68 4.30
53 54 2.818274 CGCGGGTTTAGTGGAGGC 60.818 66.667 0.00 0.00 0.00 4.70
54 55 2.818274 GCGGGTTTAGTGGAGGCG 60.818 66.667 0.00 0.00 0.00 5.52
55 56 2.660802 CGGGTTTAGTGGAGGCGT 59.339 61.111 0.00 0.00 0.00 5.68
56 57 1.892338 CGGGTTTAGTGGAGGCGTA 59.108 57.895 0.00 0.00 0.00 4.42
57 58 0.462789 CGGGTTTAGTGGAGGCGTAT 59.537 55.000 0.00 0.00 0.00 3.06
58 59 1.805120 CGGGTTTAGTGGAGGCGTATG 60.805 57.143 0.00 0.00 0.00 2.39
59 60 1.483415 GGGTTTAGTGGAGGCGTATGA 59.517 52.381 0.00 0.00 0.00 2.15
60 61 2.093341 GGGTTTAGTGGAGGCGTATGAA 60.093 50.000 0.00 0.00 0.00 2.57
61 62 3.433173 GGGTTTAGTGGAGGCGTATGAAT 60.433 47.826 0.00 0.00 0.00 2.57
62 63 4.202284 GGGTTTAGTGGAGGCGTATGAATA 60.202 45.833 0.00 0.00 0.00 1.75
63 64 4.748600 GGTTTAGTGGAGGCGTATGAATAC 59.251 45.833 0.00 0.00 0.00 1.89
73 74 2.349297 GTATGAATACGGCGAGGAGG 57.651 55.000 16.62 0.00 0.00 4.30
74 75 0.601558 TATGAATACGGCGAGGAGGC 59.398 55.000 16.62 0.00 42.76 4.70
81 82 2.268920 GGCGAGGAGGCATGTTCA 59.731 61.111 0.00 0.00 45.92 3.18
82 83 1.817099 GGCGAGGAGGCATGTTCAG 60.817 63.158 0.00 0.00 45.92 3.02
83 84 2.467826 GCGAGGAGGCATGTTCAGC 61.468 63.158 0.00 0.00 0.00 4.26
90 91 3.512516 GCATGTTCAGCCGGGCTC 61.513 66.667 20.97 9.08 36.40 4.70
91 92 2.270205 CATGTTCAGCCGGGCTCT 59.730 61.111 20.97 0.00 36.40 4.09
92 93 1.522092 CATGTTCAGCCGGGCTCTA 59.478 57.895 20.97 7.62 36.40 2.43
93 94 0.531532 CATGTTCAGCCGGGCTCTAG 60.532 60.000 20.97 8.71 36.40 2.43
94 95 0.687757 ATGTTCAGCCGGGCTCTAGA 60.688 55.000 20.97 11.29 36.40 2.43
95 96 0.687757 TGTTCAGCCGGGCTCTAGAT 60.688 55.000 20.97 0.00 36.40 1.98
96 97 1.329256 GTTCAGCCGGGCTCTAGATA 58.671 55.000 20.97 2.47 36.40 1.98
97 98 1.271102 GTTCAGCCGGGCTCTAGATAG 59.729 57.143 20.97 6.22 36.40 2.08
98 99 0.896019 TCAGCCGGGCTCTAGATAGC 60.896 60.000 20.97 0.00 36.40 2.97
99 100 0.897863 CAGCCGGGCTCTAGATAGCT 60.898 60.000 20.97 0.00 42.37 3.32
100 101 0.178947 AGCCGGGCTCTAGATAGCTT 60.179 55.000 17.69 0.00 42.37 3.74
101 102 0.682292 GCCGGGCTCTAGATAGCTTT 59.318 55.000 12.87 0.00 42.37 3.51
102 103 1.337354 GCCGGGCTCTAGATAGCTTTC 60.337 57.143 12.87 0.00 42.37 2.62
103 104 1.068194 CCGGGCTCTAGATAGCTTTCG 60.068 57.143 0.00 6.12 42.37 3.46
104 105 1.609555 CGGGCTCTAGATAGCTTTCGT 59.390 52.381 0.00 0.00 42.37 3.85
105 106 2.605823 CGGGCTCTAGATAGCTTTCGTG 60.606 54.545 0.00 0.00 42.37 4.35
106 107 2.288518 GGGCTCTAGATAGCTTTCGTGG 60.289 54.545 0.00 0.00 42.37 4.94
107 108 2.362717 GGCTCTAGATAGCTTTCGTGGT 59.637 50.000 0.00 0.00 42.37 4.16
108 109 3.181474 GGCTCTAGATAGCTTTCGTGGTT 60.181 47.826 0.00 0.00 42.37 3.67
109 110 4.045783 GCTCTAGATAGCTTTCGTGGTTC 58.954 47.826 0.00 0.00 39.50 3.62
110 111 4.283678 CTCTAGATAGCTTTCGTGGTTCG 58.716 47.826 0.00 0.00 41.41 3.95
111 112 3.693085 TCTAGATAGCTTTCGTGGTTCGT 59.307 43.478 0.00 0.00 40.80 3.85
112 113 4.877823 TCTAGATAGCTTTCGTGGTTCGTA 59.122 41.667 0.00 0.00 40.80 3.43
113 114 3.767278 AGATAGCTTTCGTGGTTCGTAC 58.233 45.455 0.00 0.00 40.80 3.67
114 115 3.192001 AGATAGCTTTCGTGGTTCGTACA 59.808 43.478 0.00 0.00 40.80 2.90
115 116 1.779569 AGCTTTCGTGGTTCGTACAG 58.220 50.000 0.00 0.00 40.80 2.74
116 117 1.338973 AGCTTTCGTGGTTCGTACAGA 59.661 47.619 0.00 0.00 40.80 3.41
117 118 2.129607 GCTTTCGTGGTTCGTACAGAA 58.870 47.619 0.00 0.00 40.80 3.02
118 119 2.735134 GCTTTCGTGGTTCGTACAGAAT 59.265 45.455 0.00 0.00 41.49 2.40
119 120 3.185797 GCTTTCGTGGTTCGTACAGAATT 59.814 43.478 0.00 0.00 41.49 2.17
120 121 4.698276 CTTTCGTGGTTCGTACAGAATTG 58.302 43.478 0.00 0.00 41.49 2.32
121 122 3.374220 TCGTGGTTCGTACAGAATTGT 57.626 42.857 0.00 0.00 41.49 2.71
122 123 3.311106 TCGTGGTTCGTACAGAATTGTC 58.689 45.455 0.00 0.00 41.49 3.18
123 124 3.005050 TCGTGGTTCGTACAGAATTGTCT 59.995 43.478 0.00 0.00 41.49 3.41
124 125 4.216042 TCGTGGTTCGTACAGAATTGTCTA 59.784 41.667 0.00 0.00 41.49 2.59
125 126 4.919168 CGTGGTTCGTACAGAATTGTCTAA 59.081 41.667 0.00 0.00 41.49 2.10
126 127 5.403166 CGTGGTTCGTACAGAATTGTCTAAA 59.597 40.000 0.00 0.00 41.49 1.85
127 128 6.587651 GTGGTTCGTACAGAATTGTCTAAAC 58.412 40.000 0.00 0.00 41.49 2.01
128 129 6.201425 GTGGTTCGTACAGAATTGTCTAAACA 59.799 38.462 0.00 0.00 41.49 2.83
129 130 6.422701 TGGTTCGTACAGAATTGTCTAAACAG 59.577 38.462 0.00 0.00 41.49 3.16
130 131 6.423001 GGTTCGTACAGAATTGTCTAAACAGT 59.577 38.462 0.00 0.00 41.49 3.55
131 132 7.042254 GGTTCGTACAGAATTGTCTAAACAGTT 60.042 37.037 0.00 0.00 41.49 3.16
132 133 7.402811 TCGTACAGAATTGTCTAAACAGTTG 57.597 36.000 0.00 0.00 35.67 3.16
133 134 6.071463 CGTACAGAATTGTCTAAACAGTTGC 58.929 40.000 0.00 0.00 35.67 4.17
134 135 5.095691 ACAGAATTGTCTAAACAGTTGCG 57.904 39.130 0.00 0.00 35.67 4.85
135 136 4.024048 ACAGAATTGTCTAAACAGTTGCGG 60.024 41.667 0.00 0.00 35.67 5.69
136 137 4.213270 CAGAATTGTCTAAACAGTTGCGGA 59.787 41.667 0.00 0.00 35.67 5.54
137 138 4.819630 AGAATTGTCTAAACAGTTGCGGAA 59.180 37.500 0.00 0.00 35.67 4.30
138 139 4.749245 ATTGTCTAAACAGTTGCGGAAG 57.251 40.909 0.00 0.00 36.57 3.46
139 140 3.462483 TGTCTAAACAGTTGCGGAAGA 57.538 42.857 0.00 0.00 0.00 2.87
140 141 4.002906 TGTCTAAACAGTTGCGGAAGAT 57.997 40.909 0.00 0.00 0.00 2.40
141 142 4.385825 TGTCTAAACAGTTGCGGAAGATT 58.614 39.130 0.00 0.00 0.00 2.40
142 143 4.819630 TGTCTAAACAGTTGCGGAAGATTT 59.180 37.500 0.00 0.00 0.00 2.17
143 144 5.147162 GTCTAAACAGTTGCGGAAGATTTG 58.853 41.667 0.00 0.00 0.00 2.32
144 145 5.049680 GTCTAAACAGTTGCGGAAGATTTGA 60.050 40.000 0.00 0.00 0.00 2.69
145 146 3.904136 AACAGTTGCGGAAGATTTGAG 57.096 42.857 0.00 0.00 0.00 3.02
146 147 3.126001 ACAGTTGCGGAAGATTTGAGA 57.874 42.857 0.00 0.00 0.00 3.27
147 148 3.070018 ACAGTTGCGGAAGATTTGAGAG 58.930 45.455 0.00 0.00 0.00 3.20
148 149 3.070018 CAGTTGCGGAAGATTTGAGAGT 58.930 45.455 0.00 0.00 0.00 3.24
149 150 3.124297 CAGTTGCGGAAGATTTGAGAGTC 59.876 47.826 0.00 0.00 0.00 3.36
150 151 1.996292 TGCGGAAGATTTGAGAGTCG 58.004 50.000 0.00 0.00 0.00 4.18
151 152 0.647925 GCGGAAGATTTGAGAGTCGC 59.352 55.000 0.00 0.00 35.34 5.19
152 153 0.917259 CGGAAGATTTGAGAGTCGCG 59.083 55.000 0.00 0.00 0.00 5.87
153 154 1.732732 CGGAAGATTTGAGAGTCGCGT 60.733 52.381 5.77 0.00 0.00 6.01
154 155 2.338500 GGAAGATTTGAGAGTCGCGTT 58.662 47.619 5.77 0.00 0.00 4.84
155 156 2.092838 GGAAGATTTGAGAGTCGCGTTG 59.907 50.000 5.77 0.00 0.00 4.10
156 157 1.714794 AGATTTGAGAGTCGCGTTGG 58.285 50.000 5.77 0.00 0.00 3.77
157 158 1.272490 AGATTTGAGAGTCGCGTTGGA 59.728 47.619 5.77 0.00 0.00 3.53
158 159 2.066262 GATTTGAGAGTCGCGTTGGAA 58.934 47.619 5.77 0.00 0.00 3.53
159 160 1.942677 TTTGAGAGTCGCGTTGGAAA 58.057 45.000 5.77 0.00 0.00 3.13
160 161 2.163818 TTGAGAGTCGCGTTGGAAAT 57.836 45.000 5.77 0.00 0.00 2.17
161 162 1.428448 TGAGAGTCGCGTTGGAAATG 58.572 50.000 5.77 0.00 35.44 2.32
162 163 1.270094 TGAGAGTCGCGTTGGAAATGT 60.270 47.619 5.77 0.00 34.61 2.71
163 164 1.390463 GAGAGTCGCGTTGGAAATGTC 59.610 52.381 5.77 0.00 34.61 3.06
164 165 0.442699 GAGTCGCGTTGGAAATGTCC 59.557 55.000 5.77 0.00 45.21 4.02
165 166 0.034896 AGTCGCGTTGGAAATGTCCT 59.965 50.000 5.77 0.00 45.22 3.85
166 167 0.872388 GTCGCGTTGGAAATGTCCTT 59.128 50.000 5.77 0.00 45.22 3.36
167 168 2.070783 GTCGCGTTGGAAATGTCCTTA 58.929 47.619 5.77 0.00 45.22 2.69
168 169 2.093783 GTCGCGTTGGAAATGTCCTTAG 59.906 50.000 5.77 0.00 45.22 2.18
169 170 1.396996 CGCGTTGGAAATGTCCTTAGG 59.603 52.381 2.89 0.00 45.22 2.69
170 171 2.433436 GCGTTGGAAATGTCCTTAGGT 58.567 47.619 2.89 0.00 45.22 3.08
171 172 2.418976 GCGTTGGAAATGTCCTTAGGTC 59.581 50.000 2.89 0.00 45.22 3.85
172 173 3.007635 CGTTGGAAATGTCCTTAGGTCC 58.992 50.000 2.89 0.00 45.22 4.46
173 174 3.307480 CGTTGGAAATGTCCTTAGGTCCT 60.307 47.826 2.89 0.00 45.22 3.85
174 175 4.010349 GTTGGAAATGTCCTTAGGTCCTG 58.990 47.826 2.89 0.00 45.22 3.86
175 176 2.576191 TGGAAATGTCCTTAGGTCCTGG 59.424 50.000 2.89 0.00 45.22 4.45
176 177 2.576648 GGAAATGTCCTTAGGTCCTGGT 59.423 50.000 0.00 0.00 41.24 4.00
177 178 3.610911 GAAATGTCCTTAGGTCCTGGTG 58.389 50.000 0.00 0.00 0.00 4.17
178 179 0.912486 ATGTCCTTAGGTCCTGGTGC 59.088 55.000 0.00 0.00 0.00 5.01
179 180 0.472925 TGTCCTTAGGTCCTGGTGCA 60.473 55.000 0.00 0.00 0.00 4.57
180 181 0.036294 GTCCTTAGGTCCTGGTGCAC 60.036 60.000 8.80 8.80 0.00 4.57
181 182 0.178903 TCCTTAGGTCCTGGTGCACT 60.179 55.000 17.98 0.00 0.00 4.40
182 183 0.250513 CCTTAGGTCCTGGTGCACTC 59.749 60.000 17.98 7.60 0.00 3.51
183 184 1.270907 CTTAGGTCCTGGTGCACTCT 58.729 55.000 17.98 7.54 0.00 3.24
184 185 1.625818 CTTAGGTCCTGGTGCACTCTT 59.374 52.381 17.98 2.14 0.00 2.85
185 186 0.976641 TAGGTCCTGGTGCACTCTTG 59.023 55.000 17.98 3.38 0.00 3.02
197 198 3.838271 CTCTTGCTCGGCGGCCTA 61.838 66.667 18.34 5.04 0.00 3.93
198 199 3.371097 CTCTTGCTCGGCGGCCTAA 62.371 63.158 18.34 4.02 0.00 2.69
199 200 2.203070 CTTGCTCGGCGGCCTAAT 60.203 61.111 18.34 0.00 0.00 1.73
200 201 2.203015 TTGCTCGGCGGCCTAATC 60.203 61.111 18.34 4.07 0.00 1.75
201 202 3.750373 TTGCTCGGCGGCCTAATCC 62.750 63.158 18.34 1.44 0.00 3.01
202 203 3.930012 GCTCGGCGGCCTAATCCT 61.930 66.667 18.34 0.00 0.00 3.24
203 204 2.029666 CTCGGCGGCCTAATCCTG 59.970 66.667 18.34 0.00 0.00 3.86
204 205 2.762459 TCGGCGGCCTAATCCTGT 60.762 61.111 18.34 0.00 0.00 4.00
205 206 2.189521 CGGCGGCCTAATCCTGTT 59.810 61.111 18.34 0.00 0.00 3.16
206 207 1.044231 TCGGCGGCCTAATCCTGTTA 61.044 55.000 18.34 0.00 0.00 2.41
207 208 0.034896 CGGCGGCCTAATCCTGTTAT 59.965 55.000 18.34 0.00 0.00 1.89
208 209 1.523758 GGCGGCCTAATCCTGTTATG 58.476 55.000 12.87 0.00 0.00 1.90
209 210 1.071699 GGCGGCCTAATCCTGTTATGA 59.928 52.381 12.87 0.00 0.00 2.15
210 211 2.143925 GCGGCCTAATCCTGTTATGAC 58.856 52.381 0.00 0.00 0.00 3.06
211 212 2.224305 GCGGCCTAATCCTGTTATGACT 60.224 50.000 0.00 0.00 0.00 3.41
212 213 3.393800 CGGCCTAATCCTGTTATGACTG 58.606 50.000 0.00 0.00 0.00 3.51
243 244 6.663093 TGCTTTATTTGAGGGCTTTCTCATTA 59.337 34.615 5.96 0.35 42.57 1.90
255 256 9.574516 AGGGCTTTCTCATTATTTTATATCGTT 57.425 29.630 0.00 0.00 0.00 3.85
282 1285 4.082787 CCCTGTACTTATGGTTTGTGCTTG 60.083 45.833 0.00 0.00 0.00 4.01
294 1297 7.517614 TGGTTTGTGCTTGATCTATAAAACA 57.482 32.000 0.00 0.00 0.00 2.83
297 1300 6.757897 TTGTGCTTGATCTATAAAACAGGG 57.242 37.500 0.00 0.00 0.00 4.45
298 1301 5.192927 TGTGCTTGATCTATAAAACAGGGG 58.807 41.667 0.00 0.00 0.00 4.79
328 1337 6.680874 TTTTCGTAAAAACCTAGCAGACAA 57.319 33.333 0.00 0.00 29.44 3.18
335 1344 7.908601 CGTAAAAACCTAGCAGACAATAAATCC 59.091 37.037 0.00 0.00 0.00 3.01
416 1425 7.843490 TCCTTAACAATTCTATGTTTCTCCG 57.157 36.000 0.00 0.00 40.52 4.63
429 1438 0.035439 TTCTCCGGGAACAAGCCATC 60.035 55.000 0.00 0.00 0.00 3.51
507 1516 1.982226 TCGATTCAAGGAACAGGGGAA 59.018 47.619 0.00 0.00 0.00 3.97
528 1538 4.298103 AGCACATTCTTCCTCAGACAAT 57.702 40.909 0.00 0.00 0.00 2.71
536 1546 1.811266 CCTCAGACAATGGGACGCG 60.811 63.158 3.53 3.53 0.00 6.01
672 1721 2.565841 AGCAAATACCGATGAAGAGCC 58.434 47.619 0.00 0.00 0.00 4.70
701 1786 8.726988 TGTTATAAGAAAGAAGAAAATGGACCG 58.273 33.333 0.00 0.00 0.00 4.79
733 1826 5.154222 TGCGCGTAGATACAATATTCAGAG 58.846 41.667 8.43 0.00 0.00 3.35
739 1832 7.362229 GCGTAGATACAATATTCAGAGTAGCCT 60.362 40.741 0.00 0.00 0.00 4.58
813 1919 1.657751 CGCCTCTCTCGTGATGACCA 61.658 60.000 0.00 0.00 0.00 4.02
855 1987 7.762615 GCAAAGGCTATATATACACGGACATTA 59.237 37.037 0.00 0.00 36.96 1.90
923 2082 2.464157 AGCTACAACACAGAGCTTCC 57.536 50.000 0.00 0.00 44.08 3.46
924 2083 1.002544 AGCTACAACACAGAGCTTCCC 59.997 52.381 0.00 0.00 44.08 3.97
925 2084 1.270839 GCTACAACACAGAGCTTCCCA 60.271 52.381 0.00 0.00 33.28 4.37
926 2085 2.616510 GCTACAACACAGAGCTTCCCAT 60.617 50.000 0.00 0.00 33.28 4.00
927 2086 2.191128 ACAACACAGAGCTTCCCATC 57.809 50.000 0.00 0.00 0.00 3.51
979 2143 3.244044 TGGTGAGTTTAATTTGCAAGGGC 60.244 43.478 0.00 0.00 41.68 5.19
1050 2216 3.112709 GTGGCTCTCGTGTTCGCC 61.113 66.667 0.00 0.00 42.78 5.54
1174 2348 9.113838 AGTAGCTTATTTCAAAGTCATGTATGG 57.886 33.333 0.00 0.00 0.00 2.74
1175 2349 7.338800 AGCTTATTTCAAAGTCATGTATGGG 57.661 36.000 0.00 0.00 0.00 4.00
1176 2350 5.979517 GCTTATTTCAAAGTCATGTATGGGC 59.020 40.000 0.00 0.00 0.00 5.36
1177 2351 6.463995 TTATTTCAAAGTCATGTATGGGCC 57.536 37.500 0.00 0.00 0.00 5.80
1178 2352 3.448093 TTCAAAGTCATGTATGGGCCA 57.552 42.857 9.61 9.61 0.00 5.36
1179 2353 2.722094 TCAAAGTCATGTATGGGCCAC 58.278 47.619 9.28 0.00 0.00 5.01
1180 2354 2.308570 TCAAAGTCATGTATGGGCCACT 59.691 45.455 9.28 0.22 0.00 4.00
1181 2355 3.091545 CAAAGTCATGTATGGGCCACTT 58.908 45.455 9.28 2.31 0.00 3.16
1182 2356 2.425143 AGTCATGTATGGGCCACTTG 57.575 50.000 9.28 6.00 0.00 3.16
1183 2357 1.915489 AGTCATGTATGGGCCACTTGA 59.085 47.619 9.28 8.56 0.00 3.02
1184 2358 2.308570 AGTCATGTATGGGCCACTTGAA 59.691 45.455 9.28 0.00 33.45 2.69
1185 2359 3.053395 AGTCATGTATGGGCCACTTGAAT 60.053 43.478 9.28 7.78 33.45 2.57
1186 2360 4.165950 AGTCATGTATGGGCCACTTGAATA 59.834 41.667 9.28 0.00 33.45 1.75
1187 2361 4.516698 GTCATGTATGGGCCACTTGAATAG 59.483 45.833 9.28 0.00 33.45 1.73
1188 2362 4.165950 TCATGTATGGGCCACTTGAATAGT 59.834 41.667 9.28 0.00 37.68 2.12
1189 2363 4.584638 TGTATGGGCCACTTGAATAGTT 57.415 40.909 9.28 0.00 33.85 2.24
1190 2364 4.929479 TGTATGGGCCACTTGAATAGTTT 58.071 39.130 9.28 0.00 33.85 2.66
1191 2365 5.329399 TGTATGGGCCACTTGAATAGTTTT 58.671 37.500 9.28 0.00 33.85 2.43
1192 2366 5.777732 TGTATGGGCCACTTGAATAGTTTTT 59.222 36.000 9.28 0.00 33.85 1.94
1213 2387 4.939509 TTTTCAAGAGTACGCCAATAGC 57.060 40.909 0.00 0.00 38.52 2.97
1214 2388 3.603158 TTCAAGAGTACGCCAATAGCA 57.397 42.857 0.00 0.00 44.04 3.49
1215 2389 3.819564 TCAAGAGTACGCCAATAGCAT 57.180 42.857 0.00 0.00 44.04 3.79
1216 2390 4.929819 TCAAGAGTACGCCAATAGCATA 57.070 40.909 0.00 0.00 44.04 3.14
1217 2391 4.617959 TCAAGAGTACGCCAATAGCATAC 58.382 43.478 0.00 0.00 40.48 2.39
1218 2392 3.662247 AGAGTACGCCAATAGCATACC 57.338 47.619 0.00 0.00 41.09 2.73
1219 2393 3.231818 AGAGTACGCCAATAGCATACCT 58.768 45.455 0.00 0.00 41.09 3.08
1220 2394 3.641906 AGAGTACGCCAATAGCATACCTT 59.358 43.478 0.00 0.00 41.09 3.50
1221 2395 4.831155 AGAGTACGCCAATAGCATACCTTA 59.169 41.667 0.00 0.00 41.09 2.69
1222 2396 5.047943 AGAGTACGCCAATAGCATACCTTAG 60.048 44.000 0.00 0.00 41.09 2.18
1223 2397 4.587684 AGTACGCCAATAGCATACCTTAGT 59.412 41.667 0.00 0.00 41.09 2.24
1224 2398 4.417426 ACGCCAATAGCATACCTTAGTT 57.583 40.909 0.00 0.00 44.04 2.24
1225 2399 4.777463 ACGCCAATAGCATACCTTAGTTT 58.223 39.130 0.00 0.00 44.04 2.66
1226 2400 5.190677 ACGCCAATAGCATACCTTAGTTTT 58.809 37.500 0.00 0.00 44.04 2.43
1227 2401 6.350906 ACGCCAATAGCATACCTTAGTTTTA 58.649 36.000 0.00 0.00 44.04 1.52
1228 2402 6.996282 ACGCCAATAGCATACCTTAGTTTTAT 59.004 34.615 0.00 0.00 44.04 1.40
1229 2403 8.152246 ACGCCAATAGCATACCTTAGTTTTATA 58.848 33.333 0.00 0.00 44.04 0.98
1230 2404 8.656849 CGCCAATAGCATACCTTAGTTTTATAG 58.343 37.037 0.00 0.00 44.04 1.31
1231 2405 9.720769 GCCAATAGCATACCTTAGTTTTATAGA 57.279 33.333 0.00 0.00 42.97 1.98
1236 2410 7.746703 AGCATACCTTAGTTTTATAGAAGGGG 58.253 38.462 4.65 0.00 42.39 4.79
1237 2411 6.430308 GCATACCTTAGTTTTATAGAAGGGGC 59.570 42.308 4.65 1.95 42.39 5.80
1238 2412 5.384145 ACCTTAGTTTTATAGAAGGGGCC 57.616 43.478 0.00 0.00 42.39 5.80
1239 2413 4.791880 ACCTTAGTTTTATAGAAGGGGCCA 59.208 41.667 4.39 0.00 42.39 5.36
1240 2414 5.254501 ACCTTAGTTTTATAGAAGGGGCCAA 59.745 40.000 4.39 0.00 42.39 4.52
1241 2415 6.068438 ACCTTAGTTTTATAGAAGGGGCCAAT 60.068 38.462 4.39 0.00 42.39 3.16
1242 2416 7.129816 ACCTTAGTTTTATAGAAGGGGCCAATA 59.870 37.037 4.39 0.00 42.39 1.90
1243 2417 7.665974 CCTTAGTTTTATAGAAGGGGCCAATAG 59.334 40.741 4.39 0.00 35.74 1.73
1244 2418 5.386060 AGTTTTATAGAAGGGGCCAATAGC 58.614 41.667 4.39 0.00 42.60 2.97
1245 2419 5.103686 AGTTTTATAGAAGGGGCCAATAGCA 60.104 40.000 4.39 0.00 46.50 3.49
1246 2420 5.599048 TTTATAGAAGGGGCCAATAGCAT 57.401 39.130 4.39 0.00 46.50 3.79
1247 2421 6.712114 TTTATAGAAGGGGCCAATAGCATA 57.288 37.500 4.39 0.00 46.50 3.14
1248 2422 2.959465 AGAAGGGGCCAATAGCATAC 57.041 50.000 4.39 0.00 46.50 2.39
1249 2423 2.422746 AGAAGGGGCCAATAGCATACT 58.577 47.619 4.39 0.00 46.50 2.12
1250 2424 2.785857 AGAAGGGGCCAATAGCATACTT 59.214 45.455 4.39 0.00 46.50 2.24
1251 2425 3.205282 AGAAGGGGCCAATAGCATACTTT 59.795 43.478 4.39 0.00 46.50 2.66
1252 2426 4.415512 AGAAGGGGCCAATAGCATACTTTA 59.584 41.667 4.39 0.00 46.50 1.85
1253 2427 4.373156 AGGGGCCAATAGCATACTTTAG 57.627 45.455 4.39 0.00 46.50 1.85
1254 2428 2.820197 GGGGCCAATAGCATACTTTAGC 59.180 50.000 4.39 0.00 46.50 3.09
1255 2429 3.498661 GGGGCCAATAGCATACTTTAGCT 60.499 47.826 4.39 0.00 46.50 3.32
1256 2430 4.145052 GGGCCAATAGCATACTTTAGCTT 58.855 43.478 4.39 0.00 46.50 3.74
1257 2431 4.584743 GGGCCAATAGCATACTTTAGCTTT 59.415 41.667 4.39 0.00 46.50 3.51
1258 2432 5.768164 GGGCCAATAGCATACTTTAGCTTTA 59.232 40.000 4.39 0.00 46.50 1.85
1259 2433 6.434340 GGGCCAATAGCATACTTTAGCTTTAT 59.566 38.462 4.39 0.00 46.50 1.40
1260 2434 7.610305 GGGCCAATAGCATACTTTAGCTTTATA 59.390 37.037 4.39 0.00 46.50 0.98
1261 2435 8.669243 GGCCAATAGCATACTTTAGCTTTATAG 58.331 37.037 0.00 0.00 46.50 1.31
1262 2436 9.436957 GCCAATAGCATACTTTAGCTTTATAGA 57.563 33.333 0.00 0.00 42.05 1.98
1454 2709 2.443016 ACAAACCTTTGCCCGCCA 60.443 55.556 0.00 0.00 41.79 5.69
1588 2843 3.513912 CCTGTCATGTACCAGAGGTAACA 59.486 47.826 10.13 0.00 40.12 2.41
1589 2844 4.162320 CCTGTCATGTACCAGAGGTAACAT 59.838 45.833 10.13 2.28 40.12 2.71
1594 2854 4.530710 TGTACCAGAGGTAACATCACAC 57.469 45.455 0.00 0.00 40.12 3.82
1632 2895 1.882912 TGTGCCTGTCTGCAAGTTAG 58.117 50.000 0.00 0.00 44.11 2.34
1637 2900 4.065088 TGCCTGTCTGCAAGTTAGTAAAG 58.935 43.478 0.00 0.00 38.56 1.85
1692 2955 0.107654 GGGGTGAGGTTCAAGATCGG 60.108 60.000 0.00 0.00 0.00 4.18
1913 3176 5.268118 TGTGTTCAACAATATTGTGCCAA 57.732 34.783 21.46 11.51 41.31 4.52
2020 3284 4.637534 AGTGGTTTGTGAGCATATCATCAC 59.362 41.667 9.09 9.09 44.88 3.06
2035 3299 4.831674 TCATCACACATTGGAGAGATGT 57.168 40.909 13.90 0.00 38.21 3.06
2139 3413 4.497516 ACCCTCATGTAGCTCCAATATCT 58.502 43.478 0.00 0.00 0.00 1.98
2260 3539 2.158813 TCTCTCGCTTTGGTTGTTCCTT 60.159 45.455 0.00 0.00 37.07 3.36
2279 3558 6.295719 TCCTTAGGTGACTCAGAAATAACC 57.704 41.667 0.00 0.00 43.67 2.85
2287 3566 6.208599 GGTGACTCAGAAATAACCATTCCAAA 59.791 38.462 0.00 0.00 0.00 3.28
2369 3659 0.319728 CAGACGGATCCCATGCCTAG 59.680 60.000 6.06 0.00 0.00 3.02
2390 3680 7.411480 GCCTAGAAATATTTTGGCGTGAAAAAC 60.411 37.037 18.36 0.00 29.78 2.43
2391 3681 7.596995 CCTAGAAATATTTTGGCGTGAAAAACA 59.403 33.333 1.43 0.00 29.78 2.83
2405 3695 7.412020 GGCGTGAAAAACACTTATCAAACAAAA 60.412 33.333 0.00 0.00 46.24 2.44
2498 3788 2.698274 AGGCCTACCAAACACAAAAAGG 59.302 45.455 1.29 0.00 39.06 3.11
2510 4126 9.986833 CCAAACACAAAAAGGAAAAGAAAATAG 57.013 29.630 0.00 0.00 0.00 1.73
2538 4154 4.584327 AAAGTGCAACAGTTAATGGGAC 57.416 40.909 0.00 0.00 41.43 4.46
2540 4156 3.149196 AGTGCAACAGTTAATGGGACAG 58.851 45.455 0.00 0.00 41.52 3.51
2595 4211 6.526566 AACTCAATGAAAAGACGAGTACAC 57.473 37.500 0.00 0.00 35.95 2.90
2604 4220 3.592898 AGACGAGTACACAATGCATCA 57.407 42.857 0.00 0.00 0.00 3.07
2743 4418 4.708177 AGATCATAACATGTAAGCCGCTT 58.292 39.130 11.12 11.12 0.00 4.68
2762 4437 3.119849 GCTTTTACATCGAACCATGTGCT 60.120 43.478 0.00 0.00 37.57 4.40
2771 4446 3.435590 CCATGTGCTAATGGGCGG 58.564 61.111 9.65 0.00 43.02 6.13
2777 4452 1.064758 TGTGCTAATGGGCGGAAAGAT 60.065 47.619 0.00 0.00 34.52 2.40
2780 4455 3.630312 GTGCTAATGGGCGGAAAGATAAA 59.370 43.478 0.00 0.00 34.52 1.40
2784 4459 5.472137 GCTAATGGGCGGAAAGATAAACATA 59.528 40.000 0.00 0.00 0.00 2.29
2789 4464 4.365723 GGCGGAAAGATAAACATACGAGA 58.634 43.478 0.00 0.00 0.00 4.04
2867 5124 4.363034 GCGCTAAGCCCCTCATAC 57.637 61.111 0.00 0.00 40.81 2.39
2887 5144 3.170717 ACGACAATGAGGTTAGAAGGGA 58.829 45.455 0.00 0.00 0.00 4.20
2901 5158 3.490348 AGAAGGGACAATTGACACCAAG 58.510 45.455 13.59 0.00 35.48 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.082523 CTCCGGCCACACATCCGT 62.083 66.667 2.24 0.00 43.87 4.69
1 2 2.629050 CTACTCCGGCCACACATCCG 62.629 65.000 2.24 0.00 44.89 4.18
2 3 1.144057 CTACTCCGGCCACACATCC 59.856 63.158 2.24 0.00 0.00 3.51
3 4 1.144057 CCTACTCCGGCCACACATC 59.856 63.158 2.24 0.00 0.00 3.06
4 5 1.198759 AACCTACTCCGGCCACACAT 61.199 55.000 2.24 0.00 0.00 3.21
5 6 1.412453 AAACCTACTCCGGCCACACA 61.412 55.000 2.24 0.00 0.00 3.72
6 7 0.672711 GAAACCTACTCCGGCCACAC 60.673 60.000 2.24 0.00 0.00 3.82
7 8 0.834687 AGAAACCTACTCCGGCCACA 60.835 55.000 2.24 0.00 0.00 4.17
8 9 0.108281 GAGAAACCTACTCCGGCCAC 60.108 60.000 2.24 0.00 0.00 5.01
9 10 1.601419 CGAGAAACCTACTCCGGCCA 61.601 60.000 2.24 0.00 0.00 5.36
10 11 1.141234 CGAGAAACCTACTCCGGCC 59.859 63.158 0.00 0.00 0.00 6.13
11 12 1.141234 CCGAGAAACCTACTCCGGC 59.859 63.158 0.00 0.00 0.00 6.13
12 13 1.141234 GCCGAGAAACCTACTCCGG 59.859 63.158 0.00 0.00 34.14 5.14
13 14 0.531200 AAGCCGAGAAACCTACTCCG 59.469 55.000 0.00 0.00 0.00 4.63
14 15 1.134759 GGAAGCCGAGAAACCTACTCC 60.135 57.143 0.00 0.00 0.00 3.85
15 16 1.549170 TGGAAGCCGAGAAACCTACTC 59.451 52.381 0.00 0.00 0.00 2.59
16 17 1.275573 GTGGAAGCCGAGAAACCTACT 59.724 52.381 0.00 0.00 0.00 2.57
17 18 1.723220 GTGGAAGCCGAGAAACCTAC 58.277 55.000 0.00 0.00 0.00 3.18
18 19 0.245539 CGTGGAAGCCGAGAAACCTA 59.754 55.000 0.00 0.00 0.00 3.08
19 20 1.004918 CGTGGAAGCCGAGAAACCT 60.005 57.895 0.00 0.00 0.00 3.50
20 21 2.677979 GCGTGGAAGCCGAGAAACC 61.678 63.158 0.00 0.00 0.00 3.27
21 22 2.861006 GCGTGGAAGCCGAGAAAC 59.139 61.111 0.00 0.00 0.00 2.78
22 23 2.736995 CGCGTGGAAGCCGAGAAA 60.737 61.111 0.00 0.00 0.00 2.52
23 24 4.735132 CCGCGTGGAAGCCGAGAA 62.735 66.667 10.20 0.00 37.49 2.87
28 29 2.358984 TAAACCCGCGTGGAAGCC 60.359 61.111 18.79 0.00 37.49 4.35
29 30 1.670083 ACTAAACCCGCGTGGAAGC 60.670 57.895 18.79 0.00 37.49 3.86
30 31 2.159181 CACTAAACCCGCGTGGAAG 58.841 57.895 18.79 10.56 37.49 3.46
31 32 4.364817 CACTAAACCCGCGTGGAA 57.635 55.556 18.79 0.00 37.49 3.53
34 35 1.740296 CCTCCACTAAACCCGCGTG 60.740 63.158 4.92 0.00 0.00 5.34
35 36 2.660802 CCTCCACTAAACCCGCGT 59.339 61.111 4.92 0.00 0.00 6.01
36 37 2.818274 GCCTCCACTAAACCCGCG 60.818 66.667 0.00 0.00 0.00 6.46
37 38 2.229690 TACGCCTCCACTAAACCCGC 62.230 60.000 0.00 0.00 0.00 6.13
38 39 0.462789 ATACGCCTCCACTAAACCCG 59.537 55.000 0.00 0.00 0.00 5.28
39 40 1.483415 TCATACGCCTCCACTAAACCC 59.517 52.381 0.00 0.00 0.00 4.11
40 41 2.973694 TCATACGCCTCCACTAAACC 57.026 50.000 0.00 0.00 0.00 3.27
41 42 5.902051 GTATTCATACGCCTCCACTAAAC 57.098 43.478 0.00 0.00 0.00 2.01
54 55 1.669211 GCCTCCTCGCCGTATTCATAC 60.669 57.143 0.00 0.00 0.00 2.39
55 56 0.601558 GCCTCCTCGCCGTATTCATA 59.398 55.000 0.00 0.00 0.00 2.15
56 57 1.367840 GCCTCCTCGCCGTATTCAT 59.632 57.895 0.00 0.00 0.00 2.57
57 58 1.399744 ATGCCTCCTCGCCGTATTCA 61.400 55.000 0.00 0.00 0.00 2.57
58 59 0.946221 CATGCCTCCTCGCCGTATTC 60.946 60.000 0.00 0.00 0.00 1.75
59 60 1.069765 CATGCCTCCTCGCCGTATT 59.930 57.895 0.00 0.00 0.00 1.89
60 61 1.686325 AACATGCCTCCTCGCCGTAT 61.686 55.000 0.00 0.00 0.00 3.06
61 62 2.292794 GAACATGCCTCCTCGCCGTA 62.293 60.000 0.00 0.00 0.00 4.02
62 63 3.665675 GAACATGCCTCCTCGCCGT 62.666 63.158 0.00 0.00 0.00 5.68
63 64 2.892425 GAACATGCCTCCTCGCCG 60.892 66.667 0.00 0.00 0.00 6.46
64 65 1.817099 CTGAACATGCCTCCTCGCC 60.817 63.158 0.00 0.00 0.00 5.54
65 66 2.467826 GCTGAACATGCCTCCTCGC 61.468 63.158 0.00 0.00 0.00 5.03
66 67 1.817099 GGCTGAACATGCCTCCTCG 60.817 63.158 0.00 0.00 46.38 4.63
67 68 4.232310 GGCTGAACATGCCTCCTC 57.768 61.111 0.00 0.00 46.38 3.71
73 74 2.593468 TAGAGCCCGGCTGAACATGC 62.593 60.000 19.21 0.00 39.88 4.06
74 75 0.531532 CTAGAGCCCGGCTGAACATG 60.532 60.000 19.21 0.00 39.88 3.21
75 76 0.687757 TCTAGAGCCCGGCTGAACAT 60.688 55.000 19.21 0.00 39.88 2.71
76 77 0.687757 ATCTAGAGCCCGGCTGAACA 60.688 55.000 19.21 0.00 39.88 3.18
77 78 1.271102 CTATCTAGAGCCCGGCTGAAC 59.729 57.143 19.21 1.93 39.88 3.18
78 79 1.621992 CTATCTAGAGCCCGGCTGAA 58.378 55.000 19.21 3.11 39.88 3.02
79 80 0.896019 GCTATCTAGAGCCCGGCTGA 60.896 60.000 19.21 8.69 39.88 4.26
80 81 0.897863 AGCTATCTAGAGCCCGGCTG 60.898 60.000 19.21 2.19 43.97 4.85
81 82 0.178947 AAGCTATCTAGAGCCCGGCT 60.179 55.000 13.16 13.16 43.97 5.52
82 83 0.682292 AAAGCTATCTAGAGCCCGGC 59.318 55.000 0.00 0.00 43.97 6.13
83 84 1.068194 CGAAAGCTATCTAGAGCCCGG 60.068 57.143 0.00 0.00 43.97 5.73
84 85 1.609555 ACGAAAGCTATCTAGAGCCCG 59.390 52.381 0.00 4.39 43.97 6.13
85 86 2.288518 CCACGAAAGCTATCTAGAGCCC 60.289 54.545 0.00 0.00 43.97 5.19
86 87 2.362717 ACCACGAAAGCTATCTAGAGCC 59.637 50.000 0.00 0.00 43.97 4.70
87 88 3.719173 ACCACGAAAGCTATCTAGAGC 57.281 47.619 0.00 0.00 43.19 4.09
88 89 4.201930 ACGAACCACGAAAGCTATCTAGAG 60.202 45.833 0.00 0.00 45.77 2.43
89 90 3.693085 ACGAACCACGAAAGCTATCTAGA 59.307 43.478 0.00 0.00 45.77 2.43
90 91 4.030134 ACGAACCACGAAAGCTATCTAG 57.970 45.455 0.00 0.00 45.77 2.43
91 92 4.395854 TGTACGAACCACGAAAGCTATCTA 59.604 41.667 0.00 0.00 45.77 1.98
92 93 3.192001 TGTACGAACCACGAAAGCTATCT 59.808 43.478 0.00 0.00 45.77 1.98
93 94 3.504863 TGTACGAACCACGAAAGCTATC 58.495 45.455 0.00 0.00 45.77 2.08
94 95 3.192001 TCTGTACGAACCACGAAAGCTAT 59.808 43.478 0.00 0.00 45.77 2.97
95 96 2.553602 TCTGTACGAACCACGAAAGCTA 59.446 45.455 0.00 0.00 45.77 3.32
96 97 1.338973 TCTGTACGAACCACGAAAGCT 59.661 47.619 0.00 0.00 45.77 3.74
97 98 1.774639 TCTGTACGAACCACGAAAGC 58.225 50.000 0.00 0.00 45.77 3.51
98 99 4.210537 ACAATTCTGTACGAACCACGAAAG 59.789 41.667 0.00 0.00 45.65 2.62
99 100 4.121317 ACAATTCTGTACGAACCACGAAA 58.879 39.130 0.00 0.00 45.65 3.46
100 101 3.719924 ACAATTCTGTACGAACCACGAA 58.280 40.909 0.00 0.00 45.65 3.85
101 102 3.005050 AGACAATTCTGTACGAACCACGA 59.995 43.478 0.00 0.00 39.19 4.35
102 103 3.314553 AGACAATTCTGTACGAACCACG 58.685 45.455 0.00 0.00 41.31 4.94
103 104 6.201425 TGTTTAGACAATTCTGTACGAACCAC 59.799 38.462 0.00 0.00 35.30 4.16
104 105 6.282167 TGTTTAGACAATTCTGTACGAACCA 58.718 36.000 0.00 0.00 35.30 3.67
105 106 6.423001 ACTGTTTAGACAATTCTGTACGAACC 59.577 38.462 0.00 0.00 35.30 3.62
106 107 7.404139 ACTGTTTAGACAATTCTGTACGAAC 57.596 36.000 0.00 0.00 35.30 3.95
107 108 7.517734 GCAACTGTTTAGACAATTCTGTACGAA 60.518 37.037 0.00 3.29 35.30 3.85
108 109 6.073980 GCAACTGTTTAGACAATTCTGTACGA 60.074 38.462 0.00 0.00 35.30 3.43
109 110 6.071463 GCAACTGTTTAGACAATTCTGTACG 58.929 40.000 0.00 0.00 35.30 3.67
110 111 6.071463 CGCAACTGTTTAGACAATTCTGTAC 58.929 40.000 0.00 0.00 35.30 2.90
111 112 5.178623 CCGCAACTGTTTAGACAATTCTGTA 59.821 40.000 0.00 0.00 35.30 2.74
112 113 4.024048 CCGCAACTGTTTAGACAATTCTGT 60.024 41.667 0.00 0.00 38.98 3.41
113 114 4.213270 TCCGCAACTGTTTAGACAATTCTG 59.787 41.667 0.00 0.00 34.85 3.02
114 115 4.385825 TCCGCAACTGTTTAGACAATTCT 58.614 39.130 0.00 0.00 34.85 2.40
115 116 4.742438 TCCGCAACTGTTTAGACAATTC 57.258 40.909 0.00 0.00 34.85 2.17
116 117 4.819630 TCTTCCGCAACTGTTTAGACAATT 59.180 37.500 0.00 0.00 34.85 2.32
117 118 4.385825 TCTTCCGCAACTGTTTAGACAAT 58.614 39.130 0.00 0.00 34.85 2.71
118 119 3.799366 TCTTCCGCAACTGTTTAGACAA 58.201 40.909 0.00 0.00 34.85 3.18
119 120 3.462483 TCTTCCGCAACTGTTTAGACA 57.538 42.857 0.00 0.00 0.00 3.41
120 121 5.049680 TCAAATCTTCCGCAACTGTTTAGAC 60.050 40.000 0.00 0.00 0.00 2.59
121 122 5.060506 TCAAATCTTCCGCAACTGTTTAGA 58.939 37.500 0.00 0.00 0.00 2.10
122 123 5.179368 TCTCAAATCTTCCGCAACTGTTTAG 59.821 40.000 0.00 0.00 0.00 1.85
123 124 5.060506 TCTCAAATCTTCCGCAACTGTTTA 58.939 37.500 0.00 0.00 0.00 2.01
124 125 3.882888 TCTCAAATCTTCCGCAACTGTTT 59.117 39.130 0.00 0.00 0.00 2.83
125 126 3.476552 TCTCAAATCTTCCGCAACTGTT 58.523 40.909 0.00 0.00 0.00 3.16
126 127 3.070018 CTCTCAAATCTTCCGCAACTGT 58.930 45.455 0.00 0.00 0.00 3.55
127 128 3.070018 ACTCTCAAATCTTCCGCAACTG 58.930 45.455 0.00 0.00 0.00 3.16
128 129 3.330267 GACTCTCAAATCTTCCGCAACT 58.670 45.455 0.00 0.00 0.00 3.16
129 130 2.092838 CGACTCTCAAATCTTCCGCAAC 59.907 50.000 0.00 0.00 0.00 4.17
130 131 2.337583 CGACTCTCAAATCTTCCGCAA 58.662 47.619 0.00 0.00 0.00 4.85
131 132 1.996292 CGACTCTCAAATCTTCCGCA 58.004 50.000 0.00 0.00 0.00 5.69
132 133 0.647925 GCGACTCTCAAATCTTCCGC 59.352 55.000 0.00 0.00 34.71 5.54
133 134 0.917259 CGCGACTCTCAAATCTTCCG 59.083 55.000 0.00 0.00 0.00 4.30
134 135 1.997669 ACGCGACTCTCAAATCTTCC 58.002 50.000 15.93 0.00 0.00 3.46
135 136 2.092838 CCAACGCGACTCTCAAATCTTC 59.907 50.000 15.93 0.00 0.00 2.87
136 137 2.069273 CCAACGCGACTCTCAAATCTT 58.931 47.619 15.93 0.00 0.00 2.40
137 138 1.272490 TCCAACGCGACTCTCAAATCT 59.728 47.619 15.93 0.00 0.00 2.40
138 139 1.710013 TCCAACGCGACTCTCAAATC 58.290 50.000 15.93 0.00 0.00 2.17
139 140 2.163818 TTCCAACGCGACTCTCAAAT 57.836 45.000 15.93 0.00 0.00 2.32
140 141 1.942677 TTTCCAACGCGACTCTCAAA 58.057 45.000 15.93 0.57 0.00 2.69
141 142 1.798223 CATTTCCAACGCGACTCTCAA 59.202 47.619 15.93 0.00 0.00 3.02
142 143 1.270094 ACATTTCCAACGCGACTCTCA 60.270 47.619 15.93 0.00 0.00 3.27
143 144 1.390463 GACATTTCCAACGCGACTCTC 59.610 52.381 15.93 0.00 0.00 3.20
144 145 1.429463 GACATTTCCAACGCGACTCT 58.571 50.000 15.93 0.00 0.00 3.24
145 146 0.442699 GGACATTTCCAACGCGACTC 59.557 55.000 15.93 0.00 42.30 3.36
146 147 0.034896 AGGACATTTCCAACGCGACT 59.965 50.000 15.93 0.00 45.72 4.18
147 148 0.872388 AAGGACATTTCCAACGCGAC 59.128 50.000 15.93 0.00 45.72 5.19
148 149 2.343101 CTAAGGACATTTCCAACGCGA 58.657 47.619 15.93 0.00 45.72 5.87
149 150 1.396996 CCTAAGGACATTTCCAACGCG 59.603 52.381 3.53 3.53 45.72 6.01
150 151 2.418976 GACCTAAGGACATTTCCAACGC 59.581 50.000 0.00 0.00 45.72 4.84
151 152 3.007635 GGACCTAAGGACATTTCCAACG 58.992 50.000 0.00 0.00 45.72 4.10
152 153 4.010349 CAGGACCTAAGGACATTTCCAAC 58.990 47.826 0.00 0.00 45.72 3.77
153 154 3.010138 CCAGGACCTAAGGACATTTCCAA 59.990 47.826 0.00 0.00 45.72 3.53
154 155 2.576191 CCAGGACCTAAGGACATTTCCA 59.424 50.000 0.00 0.00 45.72 3.53
155 156 2.576648 ACCAGGACCTAAGGACATTTCC 59.423 50.000 4.87 0.00 43.22 3.13
156 157 3.610911 CACCAGGACCTAAGGACATTTC 58.389 50.000 4.87 0.00 0.00 2.17
157 158 2.290960 GCACCAGGACCTAAGGACATTT 60.291 50.000 4.87 0.00 0.00 2.32
158 159 1.282157 GCACCAGGACCTAAGGACATT 59.718 52.381 4.87 0.00 0.00 2.71
159 160 0.912486 GCACCAGGACCTAAGGACAT 59.088 55.000 4.87 0.00 0.00 3.06
160 161 0.472925 TGCACCAGGACCTAAGGACA 60.473 55.000 4.87 0.51 0.00 4.02
161 162 0.036294 GTGCACCAGGACCTAAGGAC 60.036 60.000 5.22 0.92 0.00 3.85
162 163 0.178903 AGTGCACCAGGACCTAAGGA 60.179 55.000 14.63 0.00 36.65 3.36
163 164 0.250513 GAGTGCACCAGGACCTAAGG 59.749 60.000 14.63 0.00 36.65 2.69
164 165 1.270907 AGAGTGCACCAGGACCTAAG 58.729 55.000 14.63 0.00 36.65 2.18
165 166 1.347707 CAAGAGTGCACCAGGACCTAA 59.652 52.381 14.63 0.00 36.65 2.69
166 167 0.976641 CAAGAGTGCACCAGGACCTA 59.023 55.000 14.63 0.00 36.65 3.08
167 168 1.757306 CAAGAGTGCACCAGGACCT 59.243 57.895 14.63 0.00 36.65 3.85
168 169 4.386413 CAAGAGTGCACCAGGACC 57.614 61.111 14.63 0.00 36.65 4.46
180 181 2.650813 ATTAGGCCGCCGAGCAAGAG 62.651 60.000 3.05 0.00 0.00 2.85
181 182 2.644555 GATTAGGCCGCCGAGCAAGA 62.645 60.000 3.05 0.00 0.00 3.02
182 183 2.203070 ATTAGGCCGCCGAGCAAG 60.203 61.111 3.05 0.00 0.00 4.01
183 184 2.203015 GATTAGGCCGCCGAGCAA 60.203 61.111 3.05 0.00 0.00 3.91
184 185 4.235762 GGATTAGGCCGCCGAGCA 62.236 66.667 3.05 0.00 0.00 4.26
185 186 3.930012 AGGATTAGGCCGCCGAGC 61.930 66.667 3.05 0.00 0.00 5.03
186 187 2.029666 CAGGATTAGGCCGCCGAG 59.970 66.667 3.05 0.00 0.00 4.63
187 188 1.044231 TAACAGGATTAGGCCGCCGA 61.044 55.000 3.05 0.00 0.00 5.54
188 189 0.034896 ATAACAGGATTAGGCCGCCG 59.965 55.000 3.05 0.00 0.00 6.46
189 190 1.071699 TCATAACAGGATTAGGCCGCC 59.928 52.381 0.00 0.00 0.00 6.13
190 191 2.143925 GTCATAACAGGATTAGGCCGC 58.856 52.381 0.00 0.00 0.00 6.53
191 192 3.069586 TCAGTCATAACAGGATTAGGCCG 59.930 47.826 0.00 0.00 0.00 6.13
192 193 4.101741 ACTCAGTCATAACAGGATTAGGCC 59.898 45.833 0.00 0.00 0.00 5.19
193 194 5.283457 ACTCAGTCATAACAGGATTAGGC 57.717 43.478 0.00 0.00 0.00 3.93
194 195 7.414540 GCAAAACTCAGTCATAACAGGATTAGG 60.415 40.741 0.00 0.00 0.00 2.69
195 196 7.335422 AGCAAAACTCAGTCATAACAGGATTAG 59.665 37.037 0.00 0.00 0.00 1.73
196 197 7.168219 AGCAAAACTCAGTCATAACAGGATTA 58.832 34.615 0.00 0.00 0.00 1.75
197 198 6.006449 AGCAAAACTCAGTCATAACAGGATT 58.994 36.000 0.00 0.00 0.00 3.01
198 199 5.564550 AGCAAAACTCAGTCATAACAGGAT 58.435 37.500 0.00 0.00 0.00 3.24
199 200 4.973168 AGCAAAACTCAGTCATAACAGGA 58.027 39.130 0.00 0.00 0.00 3.86
200 201 5.695851 AAGCAAAACTCAGTCATAACAGG 57.304 39.130 0.00 0.00 0.00 4.00
201 202 9.683069 AAATAAAGCAAAACTCAGTCATAACAG 57.317 29.630 0.00 0.00 0.00 3.16
202 203 9.462174 CAAATAAAGCAAAACTCAGTCATAACA 57.538 29.630 0.00 0.00 0.00 2.41
203 204 9.677567 TCAAATAAAGCAAAACTCAGTCATAAC 57.322 29.630 0.00 0.00 0.00 1.89
204 205 9.897744 CTCAAATAAAGCAAAACTCAGTCATAA 57.102 29.630 0.00 0.00 0.00 1.90
205 206 8.514594 CCTCAAATAAAGCAAAACTCAGTCATA 58.485 33.333 0.00 0.00 0.00 2.15
206 207 7.373493 CCTCAAATAAAGCAAAACTCAGTCAT 58.627 34.615 0.00 0.00 0.00 3.06
207 208 6.239008 CCCTCAAATAAAGCAAAACTCAGTCA 60.239 38.462 0.00 0.00 0.00 3.41
208 209 6.152379 CCCTCAAATAAAGCAAAACTCAGTC 58.848 40.000 0.00 0.00 0.00 3.51
209 210 5.509670 GCCCTCAAATAAAGCAAAACTCAGT 60.510 40.000 0.00 0.00 0.00 3.41
210 211 4.925646 GCCCTCAAATAAAGCAAAACTCAG 59.074 41.667 0.00 0.00 0.00 3.35
211 212 4.588528 AGCCCTCAAATAAAGCAAAACTCA 59.411 37.500 0.00 0.00 0.00 3.41
212 213 5.139435 AGCCCTCAAATAAAGCAAAACTC 57.861 39.130 0.00 0.00 0.00 3.01
255 256 5.067273 CACAAACCATAAGTACAGGGTCAA 58.933 41.667 0.00 0.00 32.01 3.18
258 1261 3.073946 AGCACAAACCATAAGTACAGGGT 59.926 43.478 0.00 0.00 34.43 4.34
261 1264 5.940192 TCAAGCACAAACCATAAGTACAG 57.060 39.130 0.00 0.00 0.00 2.74
309 1318 7.908601 GGATTTATTGTCTGCTAGGTTTTTACG 59.091 37.037 0.00 0.00 0.00 3.18
310 1319 8.736244 TGGATTTATTGTCTGCTAGGTTTTTAC 58.264 33.333 0.00 0.00 0.00 2.01
311 1320 8.871629 TGGATTTATTGTCTGCTAGGTTTTTA 57.128 30.769 0.00 0.00 0.00 1.52
312 1321 7.577616 GCTGGATTTATTGTCTGCTAGGTTTTT 60.578 37.037 0.00 0.00 0.00 1.94
313 1322 6.127619 GCTGGATTTATTGTCTGCTAGGTTTT 60.128 38.462 0.00 0.00 0.00 2.43
328 1337 2.434336 TGCGTGGTCTAGCTGGATTTAT 59.566 45.455 2.00 0.00 0.00 1.40
335 1344 2.125512 GGGTGCGTGGTCTAGCTG 60.126 66.667 0.00 0.00 0.00 4.24
414 1423 2.398554 CGTGATGGCTTGTTCCCGG 61.399 63.158 0.00 0.00 0.00 5.73
416 1425 0.521735 GAACGTGATGGCTTGTTCCC 59.478 55.000 0.00 0.00 35.77 3.97
429 1438 0.374758 CATCGGCATGAAGGAACGTG 59.625 55.000 0.00 0.00 30.57 4.49
507 1516 3.777106 TTGTCTGAGGAAGAATGTGCT 57.223 42.857 0.00 0.00 36.40 4.40
528 1538 4.517815 GGTATTCGCCGCGTCCCA 62.518 66.667 13.39 0.00 0.00 4.37
536 1546 2.354821 CTGTTAGCTTTGGGTATTCGCC 59.645 50.000 0.00 0.00 0.00 5.54
582 1608 2.833794 CTTGACGTTTCACTTCAGGGA 58.166 47.619 0.00 0.00 27.91 4.20
701 1786 2.594119 ATCTACGCGCAGACACGTCC 62.594 60.000 12.06 0.00 42.46 4.79
718 1803 9.145865 GCTTAAGGCTACTCTGAATATTGTATC 57.854 37.037 4.29 0.00 38.06 2.24
733 1826 1.610522 CCATGCATGGCTTAAGGCTAC 59.389 52.381 31.95 17.26 41.75 3.58
855 1987 6.314917 AGGGTTTGGTTCTGATAGTTTGATT 58.685 36.000 0.00 0.00 0.00 2.57
876 2030 5.049405 GTGTTTGTTCTTGTATCAGTGAGGG 60.049 44.000 0.00 0.00 0.00 4.30
923 2082 1.043816 ACGTAGCTGATCTGGGATGG 58.956 55.000 0.00 0.00 0.00 3.51
924 2083 2.623416 TGTACGTAGCTGATCTGGGATG 59.377 50.000 0.00 0.00 0.00 3.51
925 2084 2.887783 CTGTACGTAGCTGATCTGGGAT 59.112 50.000 0.00 0.00 0.00 3.85
926 2085 2.092592 TCTGTACGTAGCTGATCTGGGA 60.093 50.000 0.00 0.00 0.00 4.37
927 2086 2.298610 TCTGTACGTAGCTGATCTGGG 58.701 52.381 0.00 0.00 0.00 4.45
979 2143 0.176449 TCTGTCGCTGGATGTGGATG 59.824 55.000 0.00 0.00 0.00 3.51
980 2144 0.176680 GTCTGTCGCTGGATGTGGAT 59.823 55.000 0.00 0.00 0.00 3.41
981 2145 1.184970 TGTCTGTCGCTGGATGTGGA 61.185 55.000 0.00 0.00 0.00 4.02
982 2146 0.107993 ATGTCTGTCGCTGGATGTGG 60.108 55.000 0.00 0.00 0.00 4.17
983 2147 1.004595 CATGTCTGTCGCTGGATGTG 58.995 55.000 0.00 0.00 0.00 3.21
984 2148 0.107993 CCATGTCTGTCGCTGGATGT 60.108 55.000 0.00 0.00 0.00 3.06
1191 2365 4.757657 TGCTATTGGCGTACTCTTGAAAAA 59.242 37.500 0.00 0.00 45.43 1.94
1192 2366 4.320023 TGCTATTGGCGTACTCTTGAAAA 58.680 39.130 0.00 0.00 45.43 2.29
1193 2367 3.932822 TGCTATTGGCGTACTCTTGAAA 58.067 40.909 0.00 0.00 45.43 2.69
1194 2368 3.603158 TGCTATTGGCGTACTCTTGAA 57.397 42.857 0.00 0.00 45.43 2.69
1195 2369 3.819564 ATGCTATTGGCGTACTCTTGA 57.180 42.857 0.00 0.00 45.43 3.02
1202 2376 5.540400 AACTAAGGTATGCTATTGGCGTA 57.460 39.130 0.00 0.00 45.43 4.42
1203 2377 4.417426 AACTAAGGTATGCTATTGGCGT 57.583 40.909 0.00 0.00 45.43 5.68
1204 2378 5.751243 AAAACTAAGGTATGCTATTGGCG 57.249 39.130 0.00 0.00 45.43 5.69
1205 2379 9.720769 TCTATAAAACTAAGGTATGCTATTGGC 57.279 33.333 0.00 0.00 42.22 4.52
1210 2384 8.877195 CCCCTTCTATAAAACTAAGGTATGCTA 58.123 37.037 0.00 0.00 37.40 3.49
1211 2385 7.692040 GCCCCTTCTATAAAACTAAGGTATGCT 60.692 40.741 0.00 0.00 37.40 3.79
1212 2386 6.430308 GCCCCTTCTATAAAACTAAGGTATGC 59.570 42.308 0.00 0.00 37.40 3.14
1213 2387 6.940867 GGCCCCTTCTATAAAACTAAGGTATG 59.059 42.308 0.00 0.00 37.40 2.39
1214 2388 6.622348 TGGCCCCTTCTATAAAACTAAGGTAT 59.378 38.462 0.00 0.00 37.40 2.73
1215 2389 5.971881 TGGCCCCTTCTATAAAACTAAGGTA 59.028 40.000 0.00 0.00 37.40 3.08
1216 2390 4.791880 TGGCCCCTTCTATAAAACTAAGGT 59.208 41.667 0.00 0.00 37.40 3.50
1217 2391 5.382664 TGGCCCCTTCTATAAAACTAAGG 57.617 43.478 0.00 0.00 38.58 2.69
1218 2392 7.175119 GCTATTGGCCCCTTCTATAAAACTAAG 59.825 40.741 0.00 0.00 34.27 2.18
1219 2393 7.002276 GCTATTGGCCCCTTCTATAAAACTAA 58.998 38.462 0.00 0.00 34.27 2.24
1220 2394 6.102027 TGCTATTGGCCCCTTCTATAAAACTA 59.898 38.462 0.00 0.00 40.92 2.24
1221 2395 5.103686 TGCTATTGGCCCCTTCTATAAAACT 60.104 40.000 0.00 0.00 40.92 2.66
1222 2396 5.137551 TGCTATTGGCCCCTTCTATAAAAC 58.862 41.667 0.00 0.00 40.92 2.43
1223 2397 5.396057 TGCTATTGGCCCCTTCTATAAAA 57.604 39.130 0.00 0.00 40.92 1.52
1224 2398 5.599048 ATGCTATTGGCCCCTTCTATAAA 57.401 39.130 0.00 0.00 40.92 1.40
1225 2399 5.790618 AGTATGCTATTGGCCCCTTCTATAA 59.209 40.000 0.00 0.00 40.92 0.98
1226 2400 5.350547 AGTATGCTATTGGCCCCTTCTATA 58.649 41.667 0.00 0.00 40.92 1.31
1227 2401 4.179133 AGTATGCTATTGGCCCCTTCTAT 58.821 43.478 0.00 0.00 40.92 1.98
1228 2402 3.598264 AGTATGCTATTGGCCCCTTCTA 58.402 45.455 0.00 0.00 40.92 2.10
1229 2403 2.422746 AGTATGCTATTGGCCCCTTCT 58.577 47.619 0.00 0.00 40.92 2.85
1230 2404 2.959465 AGTATGCTATTGGCCCCTTC 57.041 50.000 0.00 0.00 40.92 3.46
1231 2405 3.688049 AAAGTATGCTATTGGCCCCTT 57.312 42.857 0.00 0.00 40.92 3.95
1232 2406 3.498661 GCTAAAGTATGCTATTGGCCCCT 60.499 47.826 0.00 0.00 40.92 4.79
1233 2407 2.820197 GCTAAAGTATGCTATTGGCCCC 59.180 50.000 0.00 0.00 40.92 5.80
1234 2408 3.756117 AGCTAAAGTATGCTATTGGCCC 58.244 45.455 0.00 0.00 40.92 5.80
1235 2409 5.774498 AAAGCTAAAGTATGCTATTGGCC 57.226 39.130 0.00 0.00 38.75 5.36
1236 2410 9.436957 TCTATAAAGCTAAAGTATGCTATTGGC 57.563 33.333 0.00 6.17 38.75 4.52
1241 2415 8.594550 CCCCTTCTATAAAGCTAAAGTATGCTA 58.405 37.037 0.00 0.00 38.75 3.49
1242 2416 7.454225 CCCCTTCTATAAAGCTAAAGTATGCT 58.546 38.462 0.00 0.00 41.82 3.79
1243 2417 6.149640 GCCCCTTCTATAAAGCTAAAGTATGC 59.850 42.308 0.00 0.00 0.00 3.14
1244 2418 6.655425 GGCCCCTTCTATAAAGCTAAAGTATG 59.345 42.308 0.00 0.00 0.00 2.39
1245 2419 6.331837 TGGCCCCTTCTATAAAGCTAAAGTAT 59.668 38.462 0.00 0.00 0.00 2.12
1246 2420 5.668535 TGGCCCCTTCTATAAAGCTAAAGTA 59.331 40.000 0.00 0.00 0.00 2.24
1247 2421 4.477213 TGGCCCCTTCTATAAAGCTAAAGT 59.523 41.667 0.00 0.00 0.00 2.66
1248 2422 5.048846 TGGCCCCTTCTATAAAGCTAAAG 57.951 43.478 0.00 0.00 0.00 1.85
1249 2423 5.459982 TTGGCCCCTTCTATAAAGCTAAA 57.540 39.130 0.00 0.00 0.00 1.85
1250 2424 5.663158 ATTGGCCCCTTCTATAAAGCTAA 57.337 39.130 0.00 0.00 0.00 3.09
1251 2425 5.133660 TCAATTGGCCCCTTCTATAAAGCTA 59.866 40.000 5.42 0.00 0.00 3.32
1252 2426 4.079212 TCAATTGGCCCCTTCTATAAAGCT 60.079 41.667 5.42 0.00 0.00 3.74
1253 2427 4.215109 TCAATTGGCCCCTTCTATAAAGC 58.785 43.478 5.42 0.00 0.00 3.51
1254 2428 6.983906 ATTCAATTGGCCCCTTCTATAAAG 57.016 37.500 5.42 0.00 0.00 1.85
1255 2429 7.505585 CACTATTCAATTGGCCCCTTCTATAAA 59.494 37.037 5.42 0.00 0.00 1.40
1256 2430 7.004086 CACTATTCAATTGGCCCCTTCTATAA 58.996 38.462 5.42 0.00 0.00 0.98
1257 2431 6.331572 TCACTATTCAATTGGCCCCTTCTATA 59.668 38.462 5.42 0.00 0.00 1.31
1258 2432 5.134339 TCACTATTCAATTGGCCCCTTCTAT 59.866 40.000 5.42 0.00 0.00 1.98
1259 2433 4.476846 TCACTATTCAATTGGCCCCTTCTA 59.523 41.667 5.42 0.00 0.00 2.10
1260 2434 3.269381 TCACTATTCAATTGGCCCCTTCT 59.731 43.478 5.42 0.00 0.00 2.85
1261 2435 3.631250 TCACTATTCAATTGGCCCCTTC 58.369 45.455 5.42 0.00 0.00 3.46
1262 2436 3.756082 TCACTATTCAATTGGCCCCTT 57.244 42.857 5.42 0.00 0.00 3.95
1263 2437 3.756082 TTCACTATTCAATTGGCCCCT 57.244 42.857 5.42 0.00 0.00 4.79
1264 2438 4.280929 GGTATTCACTATTCAATTGGCCCC 59.719 45.833 5.42 0.00 0.00 5.80
1589 2844 9.594478 ACATAACAGTGATAAATATTCGTGTGA 57.406 29.630 0.00 0.00 0.00 3.58
1594 2854 8.011673 CAGGCACATAACAGTGATAAATATTCG 58.988 37.037 0.00 0.00 42.05 3.34
1632 2895 1.401905 CCCTGCAGAAATCGGCTTTAC 59.598 52.381 17.39 0.00 37.92 2.01
1637 2900 1.657751 GGAACCCTGCAGAAATCGGC 61.658 60.000 17.39 0.00 37.57 5.54
1692 2955 6.393171 ACTAGGTTAAAGTAATCGTGACCAC 58.607 40.000 0.00 0.00 0.00 4.16
1763 3026 3.430098 GCGTCTGAATCAGAGGTCTTGAT 60.430 47.826 27.05 0.00 44.88 2.57
1913 3176 1.303317 GCCCAAACGTCCATCCAGT 60.303 57.895 0.00 0.00 0.00 4.00
2020 3284 7.551974 AGAAATTACAGACATCTCTCCAATGTG 59.448 37.037 0.00 0.00 37.47 3.21
2232 3511 4.084013 ACAACCAAAGCGAGAGAATAAACG 60.084 41.667 0.00 0.00 0.00 3.60
2260 3539 6.214615 TGGAATGGTTATTTCTGAGTCACCTA 59.785 38.462 0.00 0.00 0.00 3.08
2405 3695 7.256655 CCAATTCTGAGGTAAAAGGGGAATTTT 60.257 37.037 0.00 0.00 36.40 1.82
2411 3701 2.760650 GCCAATTCTGAGGTAAAAGGGG 59.239 50.000 0.00 0.00 0.00 4.79
2418 3708 1.906574 ACCGAAGCCAATTCTGAGGTA 59.093 47.619 0.00 0.00 35.61 3.08
2469 3759 5.632118 TGTGTTTGGTAGGCCTTTTACATA 58.368 37.500 12.58 4.58 35.27 2.29
2510 4126 7.169140 CCCATTAACTGTTGCACTTTTAGTTTC 59.831 37.037 2.69 0.00 33.93 2.78
2538 4154 4.703645 TCTCGAGGTTGATCTTGTACTG 57.296 45.455 13.56 0.00 0.00 2.74
2540 4156 7.426410 TGATATTCTCGAGGTTGATCTTGTAC 58.574 38.462 13.56 0.00 0.00 2.90
2587 4203 3.197265 TCCATGATGCATTGTGTACTCG 58.803 45.455 0.00 0.00 0.00 4.18
2595 4211 4.098807 TCCATGAGTTTCCATGATGCATTG 59.901 41.667 0.00 0.00 44.98 2.82
2730 4405 3.308595 TCGATGTAAAAGCGGCTTACATG 59.691 43.478 27.14 20.20 45.55 3.21
2743 4418 5.065859 CCATTAGCACATGGTTCGATGTAAA 59.934 40.000 6.09 0.00 39.26 2.01
2762 4437 5.467399 CGTATGTTTATCTTTCCGCCCATTA 59.533 40.000 0.00 0.00 0.00 1.90
2865 5122 4.159135 GTCCCTTCTAACCTCATTGTCGTA 59.841 45.833 0.00 0.00 0.00 3.43
2867 5124 3.056107 TGTCCCTTCTAACCTCATTGTCG 60.056 47.826 0.00 0.00 0.00 4.35
2882 5139 3.593442 TCTTGGTGTCAATTGTCCCTT 57.407 42.857 5.13 0.00 31.75 3.95
2887 5144 5.163519 CCAAAGAGTTCTTGGTGTCAATTGT 60.164 40.000 5.13 0.00 36.12 2.71
2901 5158 8.414003 ACTAACAAAAGGATTTCCAAAGAGTTC 58.586 33.333 0.00 0.00 37.28 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.