Multiple sequence alignment - TraesCS4A01G058200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G058200 chr4A 100.000 4989 0 0 361 5349 48908876 48903888 0.000000e+00 9214.0
1 TraesCS4A01G058200 chr4A 100.000 82 0 0 1 82 48909236 48909155 9.280000e-33 152.0
2 TraesCS4A01G058200 chr4A 90.323 62 5 1 3824 3885 48887315 48887255 4.440000e-11 80.5
3 TraesCS4A01G058200 chr4B 91.883 3154 131 43 363 3468 510824797 510827873 0.000000e+00 4290.0
4 TraesCS4A01G058200 chr4B 90.755 1893 77 24 3450 5298 510828292 510830130 0.000000e+00 2436.0
5 TraesCS4A01G058200 chr4B 81.226 522 52 23 2741 3250 510848270 510848757 3.910000e-101 379.0
6 TraesCS4A01G058200 chr4B 88.889 81 8 1 2 82 510824486 510824565 1.230000e-16 99.0
7 TraesCS4A01G058200 chr4D 92.376 2912 151 29 363 3248 414602146 414605012 0.000000e+00 4082.0
8 TraesCS4A01G058200 chr4D 92.762 1644 78 15 3683 5299 414605213 414606842 0.000000e+00 2338.0
9 TraesCS4A01G058200 chr4D 92.832 279 20 0 5021 5299 414612684 414612962 6.450000e-109 405.0
10 TraesCS4A01G058200 chr4D 83.887 391 41 14 2862 3250 414627195 414627565 2.370000e-93 353.0
11 TraesCS4A01G058200 chr4D 94.771 153 6 2 3246 3398 74079505 74079355 2.490000e-58 237.0
12 TraesCS4A01G058200 chr4D 86.331 139 15 2 1922 2056 414624659 414624797 1.200000e-31 148.0
13 TraesCS4A01G058200 chr3A 73.328 1271 194 75 2044 3250 740163541 740162352 8.580000e-88 335.0
14 TraesCS4A01G058200 chr3D 80.094 427 49 14 2834 3250 607975937 607975537 8.770000e-73 285.0
15 TraesCS4A01G058200 chr3B 76.335 562 70 24 2725 3250 817546253 817546787 5.350000e-60 243.0
16 TraesCS4A01G058200 chr3B 79.156 379 52 13 2872 3250 817621035 817620684 2.490000e-58 237.0
17 TraesCS4A01G058200 chr2A 93.168 161 8 3 3238 3398 176673426 176673269 3.220000e-57 233.0
18 TraesCS4A01G058200 chr6D 92.638 163 9 3 3237 3398 303060017 303059857 1.160000e-56 231.0
19 TraesCS4A01G058200 chr5D 93.125 160 6 3 3239 3398 528717436 528717282 4.170000e-56 230.0
20 TraesCS4A01G058200 chr5B 93.125 160 6 3 3239 3398 665744627 665744473 4.170000e-56 230.0
21 TraesCS4A01G058200 chr5B 100.000 29 0 0 3613 3641 588397895 588397923 3.000000e-03 54.7
22 TraesCS4A01G058200 chr5A 93.125 160 6 3 3239 3398 656872443 656872289 4.170000e-56 230.0
23 TraesCS4A01G058200 chr6A 91.975 162 10 2 3237 3398 411770415 411770257 1.940000e-54 224.0
24 TraesCS4A01G058200 chr6A 90.230 174 13 3 3244 3416 538097834 538097664 1.940000e-54 224.0
25 TraesCS4A01G058200 chr1D 100.000 29 0 0 3613 3641 436100493 436100521 3.000000e-03 54.7
26 TraesCS4A01G058200 chr6B 100.000 28 0 0 3617 3644 390624393 390624420 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G058200 chr4A 48903888 48909236 5348 True 4683.0 9214 100.000 1 5349 2 chr4A.!!$R2 5348
1 TraesCS4A01G058200 chr4B 510824486 510830130 5644 False 2275.0 4290 90.509 2 5298 3 chr4B.!!$F2 5296
2 TraesCS4A01G058200 chr4D 414602146 414606842 4696 False 3210.0 4082 92.569 363 5299 2 chr4D.!!$F2 4936
3 TraesCS4A01G058200 chr4D 414624659 414627565 2906 False 250.5 353 85.109 1922 3250 2 chr4D.!!$F3 1328
4 TraesCS4A01G058200 chr3A 740162352 740163541 1189 True 335.0 335 73.328 2044 3250 1 chr3A.!!$R1 1206
5 TraesCS4A01G058200 chr3B 817546253 817546787 534 False 243.0 243 76.335 2725 3250 1 chr3B.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 929 0.110238 ATGCGATTTGTGTCGTGTGC 60.110 50.0 0.0 0.0 43.27 4.57 F
1047 1101 0.320073 CGGGAGAAGTTACACGGCAA 60.320 55.0 0.0 0.0 0.00 4.52 F
1913 1970 0.610232 AGTGATTGCCTGTTGCCTCC 60.610 55.0 0.0 0.0 40.16 4.30 F
1994 2052 2.351157 GCAGTCAAACATTCACCTCTGC 60.351 50.0 0.0 0.0 39.73 4.26 F
3423 5241 2.959030 GGGGGTATTTCCTTGCATCTTC 59.041 50.0 0.0 0.0 36.25 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1913 1970 0.179084 ACCCAGGTGTTCGCATATCG 60.179 55.000 0.00 0.0 40.15 2.92 R
2485 2567 2.287547 GGCGCAGTTGATCAAAAGTTCA 60.288 45.455 10.35 0.0 0.00 3.18 R
3611 5874 0.105039 GGACGGAGGGAGTAGCATTG 59.895 60.000 0.00 0.0 0.00 2.82 R
3952 6234 6.712241 AACTCTTCATCGTTGTTGTAGATG 57.288 37.500 0.00 0.0 42.11 2.90 R
5304 7635 0.539051 ATCTCTTCAGCAAGACCCGG 59.461 55.000 0.00 0.0 34.71 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
432 433 0.256177 GGGACTGGATCAGGGGAAAC 59.744 60.000 0.00 0.00 35.51 2.78
447 451 1.003718 AAACAGTAGCACTCCGGCC 60.004 57.895 0.00 0.00 0.00 6.13
518 522 4.351054 GACAGGTGCTGGTGGGGG 62.351 72.222 0.00 0.00 35.51 5.40
567 574 0.819259 CTCCGCTAGCTCTGCTCTCT 60.819 60.000 13.93 0.00 40.44 3.10
715 763 0.255033 TCTGCCGTGTAGCTCTCCTA 59.745 55.000 0.00 0.00 0.00 2.94
770 818 2.109799 CCCGCCAATCTGCTCGAT 59.890 61.111 0.00 0.00 0.00 3.59
790 843 0.668096 TCCGTCGTTTGGAATGGTCG 60.668 55.000 0.00 0.00 30.98 4.79
797 850 4.032558 GTCGTTTGGAATGGTCGTCTATTC 59.967 45.833 9.63 9.63 39.67 1.75
872 926 2.592796 TTCATGCGATTTGTGTCGTG 57.407 45.000 0.00 0.00 43.27 4.35
875 929 0.110238 ATGCGATTTGTGTCGTGTGC 60.110 50.000 0.00 0.00 43.27 4.57
880 934 1.002468 GATTTGTGTCGTGTGCTTGCT 60.002 47.619 0.00 0.00 0.00 3.91
915 969 4.935808 GCATACCTGCTGTTACAGTTTACT 59.064 41.667 14.23 0.00 45.32 2.24
927 981 3.966154 ACAGTTTACTCTGTGTCTCGTG 58.034 45.455 0.00 0.00 45.40 4.35
929 983 3.975670 CAGTTTACTCTGTGTCTCGTGAC 59.024 47.826 10.62 10.62 43.20 3.67
1033 1087 1.296715 CCCTTTCCAGTGACGGGAG 59.703 63.158 4.35 0.00 34.69 4.30
1036 1090 1.338200 CCTTTCCAGTGACGGGAGAAG 60.338 57.143 4.35 10.96 35.46 2.85
1037 1091 1.344763 CTTTCCAGTGACGGGAGAAGT 59.655 52.381 4.35 0.00 35.46 3.01
1038 1092 1.420430 TTCCAGTGACGGGAGAAGTT 58.580 50.000 4.35 0.00 35.46 2.66
1039 1093 2.297698 TCCAGTGACGGGAGAAGTTA 57.702 50.000 0.00 0.00 0.00 2.24
1040 1094 1.891150 TCCAGTGACGGGAGAAGTTAC 59.109 52.381 0.00 0.00 0.00 2.50
1041 1095 1.616865 CCAGTGACGGGAGAAGTTACA 59.383 52.381 0.00 0.00 31.54 2.41
1042 1096 2.609737 CCAGTGACGGGAGAAGTTACAC 60.610 54.545 0.00 0.00 31.54 2.90
1043 1097 1.268899 AGTGACGGGAGAAGTTACACG 59.731 52.381 3.21 3.21 31.54 4.49
1044 1098 0.599558 TGACGGGAGAAGTTACACGG 59.400 55.000 8.62 0.00 0.00 4.94
1045 1099 0.735287 GACGGGAGAAGTTACACGGC 60.735 60.000 8.62 2.29 0.00 5.68
1046 1100 1.290955 CGGGAGAAGTTACACGGCA 59.709 57.895 0.00 0.00 0.00 5.69
1047 1101 0.320073 CGGGAGAAGTTACACGGCAA 60.320 55.000 0.00 0.00 0.00 4.52
1048 1102 1.154197 GGGAGAAGTTACACGGCAAC 58.846 55.000 0.00 0.00 0.00 4.17
1060 1114 2.778679 GGCAACGTGCTGATCGAC 59.221 61.111 9.31 0.00 44.28 4.20
1061 1115 2.740714 GGCAACGTGCTGATCGACC 61.741 63.158 9.31 0.00 44.28 4.79
1062 1116 2.027073 GCAACGTGCTGATCGACCA 61.027 57.895 0.00 0.00 40.96 4.02
1140 1194 0.951558 ATTTCGCTGTGTTCACCACC 59.048 50.000 0.37 0.00 43.85 4.61
1188 1242 0.887387 CCATCAACCCGTTGTTCCGT 60.887 55.000 7.42 0.00 41.16 4.69
1359 1413 1.519455 GGTCGACTTCAGGCCATCG 60.519 63.158 16.46 6.27 35.91 3.84
1465 1519 0.746659 ACTTTGCACAGCTGGTTTCC 59.253 50.000 19.93 1.60 0.00 3.13
1573 1627 3.569194 TTTGTTCTTGCTGGTGGTAGA 57.431 42.857 0.00 0.00 0.00 2.59
1574 1628 3.788227 TTGTTCTTGCTGGTGGTAGAT 57.212 42.857 0.00 0.00 0.00 1.98
1586 1643 3.513912 TGGTGGTAGATCCTGTAGTTGTG 59.486 47.826 0.00 0.00 37.07 3.33
1614 1671 8.550585 TCATCCATCTGGCAATATGTATATTCA 58.449 33.333 8.26 0.00 30.91 2.57
1621 1678 5.014018 TGGCAATATGTATATTCAGCCTCCA 59.986 40.000 18.82 8.22 40.10 3.86
1656 1713 5.011943 TGGTTTTGCTTTGAGGCTATTTGAT 59.988 36.000 0.00 0.00 0.00 2.57
1657 1714 5.934043 GGTTTTGCTTTGAGGCTATTTGATT 59.066 36.000 0.00 0.00 0.00 2.57
1658 1715 6.128472 GGTTTTGCTTTGAGGCTATTTGATTG 60.128 38.462 0.00 0.00 0.00 2.67
1659 1716 5.981088 TTGCTTTGAGGCTATTTGATTGA 57.019 34.783 0.00 0.00 0.00 2.57
1678 1735 2.301870 TGAAAGAGCTCGGCCTTTTCTA 59.698 45.455 19.96 8.95 34.63 2.10
1744 1801 3.438087 GGGATATCACAGAATGCATTCCG 59.562 47.826 31.05 25.08 42.53 4.30
1849 1906 2.111384 AGGCGAGTGATAGGTGTGATT 58.889 47.619 0.00 0.00 0.00 2.57
1913 1970 0.610232 AGTGATTGCCTGTTGCCTCC 60.610 55.000 0.00 0.00 40.16 4.30
1969 2026 3.763897 GCCACAAGGTAACATCCTGAATT 59.236 43.478 0.00 0.00 37.93 2.17
1983 2040 3.698539 TCCTGAATTTGTGCAGTCAAACA 59.301 39.130 4.76 0.18 39.58 2.83
1994 2052 2.351157 GCAGTCAAACATTCACCTCTGC 60.351 50.000 0.00 0.00 39.73 4.26
2003 2061 7.611467 TCAAACATTCACCTCTGCTATGTAAAT 59.389 33.333 0.00 0.00 0.00 1.40
2023 2084 8.197439 TGTAAATCGTATCTCTGTTCATGATGT 58.803 33.333 0.00 0.00 0.00 3.06
2137 2200 7.814264 AAGATCAACAAAGTTCTGATGAGTT 57.186 32.000 0.00 0.00 32.41 3.01
2138 2201 8.908786 AAGATCAACAAAGTTCTGATGAGTTA 57.091 30.769 0.00 0.00 32.41 2.24
2139 2202 8.545229 AGATCAACAAAGTTCTGATGAGTTAG 57.455 34.615 0.00 0.00 32.41 2.34
2140 2203 6.545504 TCAACAAAGTTCTGATGAGTTAGC 57.454 37.500 0.00 0.00 0.00 3.09
2141 2204 5.470098 TCAACAAAGTTCTGATGAGTTAGCC 59.530 40.000 0.00 0.00 0.00 3.93
2142 2205 5.234466 ACAAAGTTCTGATGAGTTAGCCT 57.766 39.130 0.00 0.00 0.00 4.58
2143 2206 5.625150 ACAAAGTTCTGATGAGTTAGCCTT 58.375 37.500 0.00 0.00 0.00 4.35
2144 2207 6.064717 ACAAAGTTCTGATGAGTTAGCCTTT 58.935 36.000 0.00 0.00 0.00 3.11
2145 2208 6.547510 ACAAAGTTCTGATGAGTTAGCCTTTT 59.452 34.615 0.00 0.00 0.00 2.27
2166 2238 4.623932 TTTTATCTGCTGACCTCAGTGT 57.376 40.909 4.26 0.00 45.45 3.55
2185 2257 3.551890 GTGTAGTGAACGTAGCCATGATG 59.448 47.826 0.00 0.00 0.00 3.07
2194 2266 5.888691 ACGTAGCCATGATGACTCTATAG 57.111 43.478 0.00 0.00 0.00 1.31
2195 2267 5.317808 ACGTAGCCATGATGACTCTATAGT 58.682 41.667 0.00 0.00 39.21 2.12
2196 2268 6.473758 ACGTAGCCATGATGACTCTATAGTA 58.526 40.000 0.00 0.00 35.56 1.82
2197 2269 6.596106 ACGTAGCCATGATGACTCTATAGTAG 59.404 42.308 0.00 0.00 35.56 2.57
2435 2516 8.844244 AGCCATATCAAAAGATCTTGTATTGTC 58.156 33.333 9.17 0.00 0.00 3.18
2485 2567 5.794894 CTGGATAATTACCATCTACCGCTT 58.205 41.667 7.09 0.00 36.79 4.68
2496 2578 4.396166 CCATCTACCGCTTGAACTTTTGAT 59.604 41.667 0.00 0.00 0.00 2.57
2559 2643 5.543507 TGGTTTTAATTGGCAATGACTGT 57.456 34.783 14.47 0.00 0.00 3.55
2591 2675 9.189156 AGTATGTGGTGAAATGCATACTTTTAT 57.811 29.630 0.00 0.00 46.67 1.40
2592 2676 9.236691 GTATGTGGTGAAATGCATACTTTTATG 57.763 33.333 0.00 0.00 40.01 1.90
2593 2677 7.459795 TGTGGTGAAATGCATACTTTTATGA 57.540 32.000 0.00 0.00 37.86 2.15
2594 2678 7.537715 TGTGGTGAAATGCATACTTTTATGAG 58.462 34.615 0.00 0.00 37.86 2.90
2595 2679 6.974622 GTGGTGAAATGCATACTTTTATGAGG 59.025 38.462 0.00 0.00 37.86 3.86
2596 2680 6.663093 TGGTGAAATGCATACTTTTATGAGGT 59.337 34.615 0.00 0.00 37.86 3.85
3256 5074 4.403432 CGTATTTACCAACTACTCCCTCCA 59.597 45.833 0.00 0.00 0.00 3.86
3271 5089 7.451731 ACTCCCTCCATTCACAAATATAAGA 57.548 36.000 0.00 0.00 0.00 2.10
3304 5122 9.314321 GGATATTTCAATATGGACTACATACGG 57.686 37.037 0.00 0.00 44.41 4.02
3320 5138 5.171476 ACATACGGACTGAAATGAGTGAAG 58.829 41.667 7.93 0.00 0.00 3.02
3344 5162 9.485206 AAGAAACACACTAAAACGTGTCTATAT 57.515 29.630 0.00 0.00 45.74 0.86
3348 5166 8.679288 ACACACTAAAACGTGTCTATATACAC 57.321 34.615 10.55 10.55 45.74 2.90
3355 5173 5.368256 ACGTGTCTATATACACCCGATTC 57.632 43.478 13.93 0.00 45.66 2.52
3356 5174 4.823442 ACGTGTCTATATACACCCGATTCA 59.177 41.667 13.93 0.00 45.66 2.57
3392 5210 9.916397 GTTAGAACATCTTATATTTGTGAACCG 57.084 33.333 0.00 0.00 0.00 4.44
3393 5211 7.553881 AGAACATCTTATATTTGTGAACCGG 57.446 36.000 0.00 0.00 0.00 5.28
3394 5212 7.335627 AGAACATCTTATATTTGTGAACCGGA 58.664 34.615 9.46 0.00 0.00 5.14
3395 5213 7.495934 AGAACATCTTATATTTGTGAACCGGAG 59.504 37.037 9.46 0.00 0.00 4.63
3423 5241 2.959030 GGGGGTATTTCCTTGCATCTTC 59.041 50.000 0.00 0.00 36.25 2.87
3435 5253 7.865706 TCCTTGCATCTTCCTTATTTTCTAC 57.134 36.000 0.00 0.00 0.00 2.59
3436 5254 7.402054 TCCTTGCATCTTCCTTATTTTCTACA 58.598 34.615 0.00 0.00 0.00 2.74
3438 5256 8.689972 CCTTGCATCTTCCTTATTTTCTACATT 58.310 33.333 0.00 0.00 0.00 2.71
3518 5779 5.530915 TGAAGACATAAGGGTTGTTTCTGTG 59.469 40.000 0.00 0.00 0.00 3.66
3529 5790 4.322424 GGTTGTTTCTGTGTCACCCTTTTT 60.322 41.667 0.00 0.00 0.00 1.94
3632 5903 3.217743 GCTACTCCCTCCGTCCCG 61.218 72.222 0.00 0.00 0.00 5.14
3641 5912 3.157087 TCCCTCCGTCCCGTAATATAAC 58.843 50.000 0.00 0.00 0.00 1.89
3835 6117 9.851686 TCCAACAGCTATAAAGTATTCATCAAT 57.148 29.630 0.00 0.00 0.00 2.57
3901 6183 7.075674 CCTTGCAATGGGAAAAATTGTTATC 57.924 36.000 0.00 0.00 37.35 1.75
4024 6306 2.436173 AGAGCAGCCTACTCCATTAACC 59.564 50.000 0.00 0.00 34.56 2.85
4090 6372 2.092598 TCATGGAGGCTGCTGAGATA 57.907 50.000 7.74 0.00 0.00 1.98
4261 6543 2.136298 TTGGTGCTGTTCCAAAGACA 57.864 45.000 0.00 0.00 41.25 3.41
4345 6627 3.633525 AGCAGAAACAAAAGCTGATGACA 59.366 39.130 6.04 0.00 35.72 3.58
4416 6698 5.004345 GCCATGCGTGTACATTATTCAAAAC 59.996 40.000 4.96 0.00 0.00 2.43
4469 6752 1.246649 TTAACTCCGACGGCTGTGTA 58.753 50.000 9.66 3.93 0.00 2.90
4509 6803 2.489528 TGTAGATTGGGTAGGGGGAG 57.510 55.000 0.00 0.00 0.00 4.30
4514 6808 1.909986 GATTGGGTAGGGGGAGATAGC 59.090 57.143 0.00 0.00 0.00 2.97
4549 6843 2.290008 TGTAATTCTGGCATCGGTGTGT 60.290 45.455 0.00 0.00 0.00 3.72
4573 6867 3.812156 TTTCTTCGGTTCTGTGTGAGA 57.188 42.857 0.00 0.00 0.00 3.27
4590 6896 7.601856 TGTGTGAGATTTATTTTTGTCATCCC 58.398 34.615 0.00 0.00 0.00 3.85
4593 6899 4.920376 AGATTTATTTTTGTCATCCCGCG 58.080 39.130 0.00 0.00 0.00 6.46
5012 7325 4.637534 GTCCAGTCACATGAAGCATTACAT 59.362 41.667 0.00 0.00 0.00 2.29
5013 7326 5.124457 GTCCAGTCACATGAAGCATTACATT 59.876 40.000 0.00 0.00 0.00 2.71
5028 7341 6.264744 AGCATTACATTATGAGATTGCAAGCT 59.735 34.615 18.77 18.77 0.00 3.74
5066 7394 7.698836 AGCATTACAAAATGTTGTCTTCAAC 57.301 32.000 4.02 4.43 45.00 3.18
5076 7404 3.845781 TTGTCTTCAACAGAAGAGGCT 57.154 42.857 8.09 0.00 46.09 4.58
5077 7405 4.955811 TTGTCTTCAACAGAAGAGGCTA 57.044 40.909 8.09 0.00 46.09 3.93
5078 7406 4.258702 TGTCTTCAACAGAAGAGGCTAC 57.741 45.455 8.09 0.00 46.09 3.58
5079 7407 3.641436 TGTCTTCAACAGAAGAGGCTACA 59.359 43.478 8.09 1.29 46.09 2.74
5080 7408 4.100963 TGTCTTCAACAGAAGAGGCTACAA 59.899 41.667 8.09 0.00 46.09 2.41
5108 7436 2.619849 CCAAAGATCCACACATGAGGCT 60.620 50.000 0.00 0.00 0.00 4.58
5110 7438 2.414994 AGATCCACACATGAGGCTTG 57.585 50.000 0.00 0.00 0.00 4.01
5111 7439 1.911357 AGATCCACACATGAGGCTTGA 59.089 47.619 0.00 0.00 0.00 3.02
5179 7510 4.039245 ACCAAACTGAAGAAGACGATCTGA 59.961 41.667 0.00 0.00 0.00 3.27
5186 7517 3.761311 AGAAGACGATCTGACGTAACC 57.239 47.619 0.00 0.00 46.52 2.85
5201 7532 4.761975 ACGTAACCAAACTGAAGAAGACA 58.238 39.130 0.00 0.00 0.00 3.41
5202 7533 4.809426 ACGTAACCAAACTGAAGAAGACAG 59.191 41.667 0.00 0.00 40.68 3.51
5256 7587 6.460261 CGAGACTGTAAATCATCTGCTAAGGA 60.460 42.308 0.00 0.00 0.00 3.36
5272 7603 2.332063 AGGACTTTCACTGGTGTGTG 57.668 50.000 0.53 0.00 44.14 3.82
5273 7604 1.134098 AGGACTTTCACTGGTGTGTGG 60.134 52.381 0.53 0.00 44.14 4.17
5299 7630 3.739300 TCGAAGTCGTTTGAACTGAATCC 59.261 43.478 0.00 0.00 40.80 3.01
5300 7631 3.493129 CGAAGTCGTTTGAACTGAATCCA 59.507 43.478 0.00 0.00 34.11 3.41
5301 7632 4.376413 CGAAGTCGTTTGAACTGAATCCAG 60.376 45.833 0.00 0.00 39.28 3.86
5302 7633 2.808543 AGTCGTTTGAACTGAATCCAGC 59.191 45.455 0.00 0.00 44.16 4.85
5303 7634 2.548057 GTCGTTTGAACTGAATCCAGCA 59.452 45.455 0.00 0.00 44.16 4.41
5304 7635 2.548057 TCGTTTGAACTGAATCCAGCAC 59.452 45.455 0.00 0.00 44.16 4.40
5305 7636 2.350772 CGTTTGAACTGAATCCAGCACC 60.351 50.000 0.00 0.00 44.16 5.01
5306 7637 1.522668 TTGAACTGAATCCAGCACCG 58.477 50.000 0.00 0.00 44.16 4.94
5307 7638 0.321564 TGAACTGAATCCAGCACCGG 60.322 55.000 0.00 0.00 44.16 5.28
5308 7639 1.002134 AACTGAATCCAGCACCGGG 60.002 57.895 6.32 0.00 44.16 5.73
5309 7640 1.779061 AACTGAATCCAGCACCGGGT 61.779 55.000 6.32 0.00 44.16 5.28
5310 7641 1.450312 CTGAATCCAGCACCGGGTC 60.450 63.158 6.32 0.00 33.07 4.46
5311 7642 1.903877 CTGAATCCAGCACCGGGTCT 61.904 60.000 6.32 0.00 33.07 3.85
5312 7643 1.299976 GAATCCAGCACCGGGTCTT 59.700 57.895 6.32 0.00 0.00 3.01
5313 7644 1.002134 AATCCAGCACCGGGTCTTG 60.002 57.895 6.32 0.00 0.00 3.02
5314 7645 3.628646 ATCCAGCACCGGGTCTTGC 62.629 63.158 6.32 6.52 39.16 4.01
5318 7649 2.281484 GCACCGGGTCTTGCTGAA 60.281 61.111 6.32 0.00 35.74 3.02
5319 7650 2.328099 GCACCGGGTCTTGCTGAAG 61.328 63.158 6.32 0.00 35.74 3.02
5320 7651 1.371183 CACCGGGTCTTGCTGAAGA 59.629 57.895 6.32 0.00 35.75 2.87
5321 7652 0.671781 CACCGGGTCTTGCTGAAGAG 60.672 60.000 6.32 0.00 38.95 2.85
5322 7653 0.832135 ACCGGGTCTTGCTGAAGAGA 60.832 55.000 6.32 0.00 38.95 3.10
5323 7654 0.539051 CCGGGTCTTGCTGAAGAGAT 59.461 55.000 0.00 0.00 38.95 2.75
5324 7655 1.649664 CGGGTCTTGCTGAAGAGATG 58.350 55.000 0.00 0.00 38.95 2.90
5325 7656 1.066573 CGGGTCTTGCTGAAGAGATGT 60.067 52.381 0.00 0.00 38.95 3.06
5326 7657 2.626840 GGGTCTTGCTGAAGAGATGTC 58.373 52.381 0.00 0.00 38.95 3.06
5327 7658 2.235898 GGGTCTTGCTGAAGAGATGTCT 59.764 50.000 0.00 0.00 38.95 3.41
5328 7659 3.449018 GGGTCTTGCTGAAGAGATGTCTA 59.551 47.826 0.00 0.00 38.95 2.59
5329 7660 4.441356 GGGTCTTGCTGAAGAGATGTCTAG 60.441 50.000 0.00 0.00 38.95 2.43
5330 7661 4.111916 GTCTTGCTGAAGAGATGTCTAGC 58.888 47.826 7.52 7.52 38.95 3.42
5331 7662 2.859526 TGCTGAAGAGATGTCTAGCG 57.140 50.000 9.40 0.00 34.07 4.26
5332 7663 2.095461 TGCTGAAGAGATGTCTAGCGT 58.905 47.619 9.40 0.00 34.07 5.07
5333 7664 3.279434 TGCTGAAGAGATGTCTAGCGTA 58.721 45.455 9.40 0.00 34.07 4.42
5334 7665 3.885901 TGCTGAAGAGATGTCTAGCGTAT 59.114 43.478 9.40 0.00 34.07 3.06
5335 7666 4.339530 TGCTGAAGAGATGTCTAGCGTATT 59.660 41.667 9.40 0.00 34.07 1.89
5336 7667 5.163509 TGCTGAAGAGATGTCTAGCGTATTT 60.164 40.000 9.40 0.00 34.07 1.40
5337 7668 5.174761 GCTGAAGAGATGTCTAGCGTATTTG 59.825 44.000 0.00 0.00 30.45 2.32
5338 7669 6.451064 TGAAGAGATGTCTAGCGTATTTGA 57.549 37.500 0.00 0.00 30.45 2.69
5339 7670 6.499172 TGAAGAGATGTCTAGCGTATTTGAG 58.501 40.000 0.00 0.00 30.45 3.02
5340 7671 4.865776 AGAGATGTCTAGCGTATTTGAGC 58.134 43.478 0.00 0.00 0.00 4.26
5341 7672 3.983741 AGATGTCTAGCGTATTTGAGCC 58.016 45.455 0.00 0.00 0.00 4.70
5342 7673 2.596904 TGTCTAGCGTATTTGAGCCC 57.403 50.000 0.00 0.00 0.00 5.19
5343 7674 1.828595 TGTCTAGCGTATTTGAGCCCA 59.171 47.619 0.00 0.00 0.00 5.36
5344 7675 2.434336 TGTCTAGCGTATTTGAGCCCAT 59.566 45.455 0.00 0.00 0.00 4.00
5345 7676 3.118408 TGTCTAGCGTATTTGAGCCCATT 60.118 43.478 0.00 0.00 0.00 3.16
5346 7677 3.248602 GTCTAGCGTATTTGAGCCCATTG 59.751 47.826 0.00 0.00 0.00 2.82
5347 7678 2.418368 AGCGTATTTGAGCCCATTGA 57.582 45.000 0.00 0.00 0.00 2.57
5348 7679 2.722094 AGCGTATTTGAGCCCATTGAA 58.278 42.857 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
360 361 4.408821 TGGATCTGGGCCGCACAC 62.409 66.667 0.00 0.00 0.00 3.82
361 362 4.408821 GTGGATCTGGGCCGCACA 62.409 66.667 0.00 0.00 35.98 4.57
432 433 2.496817 GAGGCCGGAGTGCTACTG 59.503 66.667 5.05 0.00 0.00 2.74
480 484 1.795177 GTCGTGTACTCGGTCGTGC 60.795 63.158 16.50 0.00 0.00 5.34
521 525 3.978571 GAAAGGGAGTCGGCCTGGC 62.979 68.421 11.05 11.05 0.00 4.85
524 528 3.009714 GGGAAAGGGAGTCGGCCT 61.010 66.667 0.00 0.00 0.00 5.19
715 763 2.406002 CTTACCACCAAGGGCCGTGT 62.406 60.000 18.24 4.25 43.89 4.49
717 765 2.754375 CTTACCACCAAGGGCCGT 59.246 61.111 0.00 0.00 43.89 5.68
770 818 1.515081 GACCATTCCAAACGACGGAA 58.485 50.000 0.00 7.27 46.30 4.30
786 834 9.977762 ATTAAATAAACAAACGAATAGACGACC 57.022 29.630 0.00 0.00 37.03 4.79
820 874 1.801395 CGTGCTGTGGGAATACTACCG 60.801 57.143 0.00 0.00 0.00 4.02
915 969 1.960689 TGAATGGTCACGAGACACAGA 59.039 47.619 14.98 0.00 46.80 3.41
927 981 6.543465 TGAACAATCTCCATGTATGAATGGTC 59.457 38.462 8.01 6.19 46.24 4.02
1012 1066 1.002134 CCGTCACTGGAAAGGGCAT 60.002 57.895 0.00 0.00 0.00 4.40
1015 1069 1.192146 TCTCCCGTCACTGGAAAGGG 61.192 60.000 0.00 0.00 41.92 3.95
1042 1096 2.809174 TCGATCAGCACGTTGCCG 60.809 61.111 6.39 3.97 46.52 5.69
1043 1097 2.740714 GGTCGATCAGCACGTTGCC 61.741 63.158 6.39 0.00 46.52 4.52
1044 1098 1.565156 TTGGTCGATCAGCACGTTGC 61.565 55.000 0.00 2.28 45.46 4.17
1045 1099 0.865111 TTTGGTCGATCAGCACGTTG 59.135 50.000 0.00 0.00 30.04 4.10
1046 1100 1.588674 TTTTGGTCGATCAGCACGTT 58.411 45.000 0.00 0.00 30.04 3.99
1047 1101 1.808411 ATTTTGGTCGATCAGCACGT 58.192 45.000 0.00 0.00 30.04 4.49
1048 1102 2.900122 AATTTTGGTCGATCAGCACG 57.100 45.000 0.00 0.00 30.04 5.34
1049 1103 3.244976 CCAAATTTTGGTCGATCAGCAC 58.755 45.455 18.34 0.00 45.93 4.40
1050 1104 3.574284 CCAAATTTTGGTCGATCAGCA 57.426 42.857 18.34 0.00 45.93 4.41
1061 1115 5.236911 CACTGTGAATTCCACCCAAATTTTG 59.763 40.000 0.32 1.99 45.09 2.44
1062 1116 5.104569 ACACTGTGAATTCCACCCAAATTTT 60.105 36.000 15.86 0.00 45.09 1.82
1140 1194 4.514577 ATCCACGGAAGGCTCGCG 62.515 66.667 0.00 0.00 0.00 5.87
1213 1267 1.254954 ACCAAGGTGACGTCTCTACC 58.745 55.000 17.92 15.82 34.68 3.18
1290 1344 1.298157 CTTGCTCCAACGGCGAATCA 61.298 55.000 16.62 0.00 0.00 2.57
1359 1413 4.439289 GCAGGGTAGAATTTGATGCTGAAC 60.439 45.833 0.00 0.00 0.00 3.18
1437 1491 4.082625 CCAGCTGTGCAAAGTAAATCATGA 60.083 41.667 13.81 0.00 0.00 3.07
1442 1496 4.501400 GGAAACCAGCTGTGCAAAGTAAAT 60.501 41.667 13.81 0.00 0.00 1.40
1501 1555 4.734266 AGCAAGGGATCAAAGTTCTCTTT 58.266 39.130 0.00 0.00 43.66 2.52
1573 1627 3.181329 TGGATGACCACAACTACAGGAT 58.819 45.455 0.00 0.00 41.77 3.24
1574 1628 2.615391 TGGATGACCACAACTACAGGA 58.385 47.619 0.00 0.00 41.77 3.86
1586 1643 3.759581 ACATATTGCCAGATGGATGACC 58.240 45.455 2.18 0.00 37.39 4.02
1621 1678 8.404765 CCTCAAAGCAAAACCAAATTACAAATT 58.595 29.630 0.00 0.00 0.00 1.82
1656 1713 1.880027 GAAAAGGCCGAGCTCTTTCAA 59.120 47.619 12.85 0.00 33.10 2.69
1657 1714 1.072331 AGAAAAGGCCGAGCTCTTTCA 59.928 47.619 20.94 0.00 34.27 2.69
1658 1715 1.814793 AGAAAAGGCCGAGCTCTTTC 58.185 50.000 12.85 13.81 31.54 2.62
1659 1716 3.418684 TTAGAAAAGGCCGAGCTCTTT 57.581 42.857 12.85 4.81 33.13 2.52
1678 1735 9.635520 CTCATTTCTTTAGAAAACTGCATCATT 57.364 29.630 8.82 0.00 45.81 2.57
1744 1801 2.821969 AGCAATATCGGCCATTTCATCC 59.178 45.455 2.24 0.00 0.00 3.51
1849 1906 9.264719 CTCACATATGCTAGATAATTTGTGTGA 57.735 33.333 1.58 13.61 39.64 3.58
1913 1970 0.179084 ACCCAGGTGTTCGCATATCG 60.179 55.000 0.00 0.00 40.15 2.92
1969 2026 3.023119 AGGTGAATGTTTGACTGCACAA 58.977 40.909 0.00 0.00 0.00 3.33
1983 2040 5.918608 ACGATTTACATAGCAGAGGTGAAT 58.081 37.500 0.00 0.00 31.43 2.57
1994 2052 9.899226 TCATGAACAGAGATACGATTTACATAG 57.101 33.333 0.00 0.00 0.00 2.23
2003 2061 5.590259 TGAGACATCATGAACAGAGATACGA 59.410 40.000 0.00 0.00 0.00 3.43
2023 2084 7.126268 TGGTCCTGATTCTTGAGATAAATGAGA 59.874 37.037 0.00 0.00 0.00 3.27
2166 2238 3.699538 AGTCATCATGGCTACGTTCACTA 59.300 43.478 0.00 0.00 25.47 2.74
2185 2257 9.122779 AGGTCAACATTGTACTACTATAGAGTC 57.877 37.037 6.78 2.05 37.10 3.36
2194 2266 8.604035 CACATGATAAGGTCAACATTGTACTAC 58.396 37.037 0.00 0.00 40.97 2.73
2195 2267 8.536175 TCACATGATAAGGTCAACATTGTACTA 58.464 33.333 0.00 0.00 40.97 1.82
2196 2268 7.394016 TCACATGATAAGGTCAACATTGTACT 58.606 34.615 0.00 0.00 40.97 2.73
2197 2269 7.549134 TCTCACATGATAAGGTCAACATTGTAC 59.451 37.037 0.00 0.00 40.97 2.90
2257 2337 4.669206 TTTGTGCACATTTTCTCATGGT 57.331 36.364 22.39 0.00 0.00 3.55
2264 2344 3.622612 AGGCAGTTTTTGTGCACATTTTC 59.377 39.130 22.39 11.90 43.12 2.29
2335 2416 7.280876 TGTTACAGATTGTTGATTCATCCTAGC 59.719 37.037 0.00 0.00 0.00 3.42
2485 2567 2.287547 GGCGCAGTTGATCAAAAGTTCA 60.288 45.455 10.35 0.00 0.00 3.18
2496 2578 5.574891 AAAAATACATATGGCGCAGTTGA 57.425 34.783 10.83 0.00 0.00 3.18
2559 2643 4.019771 TGCATTTCACCACATACTCCTACA 60.020 41.667 0.00 0.00 0.00 2.74
2919 4737 3.900971 TCACACCATGGACATTGCATAT 58.099 40.909 21.47 0.00 0.00 1.78
3000 4818 2.378547 AGTATGCCCCTTTTGTGAAGGA 59.621 45.455 6.39 0.00 39.81 3.36
3304 5122 6.037610 AGTGTGTTTCTTCACTCATTTCAGTC 59.962 38.462 0.00 0.00 40.28 3.51
3405 5223 7.588497 AATAAGGAAGATGCAAGGAAATACC 57.412 36.000 0.00 0.00 39.35 2.73
3557 5819 6.449635 TTGTGCTCAAGTTGTGATTAAACT 57.550 33.333 9.08 0.00 39.55 2.66
3558 5820 5.687285 CCTTGTGCTCAAGTTGTGATTAAAC 59.313 40.000 23.05 0.22 46.70 2.01
3582 5844 0.181350 CCCCCAGCCTGATTCAGTAC 59.819 60.000 12.54 4.60 0.00 2.73
3604 5867 4.202264 CGGAGGGAGTAGCATTGTAGATTT 60.202 45.833 0.00 0.00 0.00 2.17
3605 5868 3.322254 CGGAGGGAGTAGCATTGTAGATT 59.678 47.826 0.00 0.00 0.00 2.40
3611 5874 0.105039 GGACGGAGGGAGTAGCATTG 59.895 60.000 0.00 0.00 0.00 2.82
3681 5962 7.056635 CCCTCCATCCCATAATATAACATGTC 58.943 42.308 0.00 0.00 0.00 3.06
3686 5967 9.225682 TCTATTCCCTCCATCCCATAATATAAC 57.774 37.037 0.00 0.00 0.00 1.89
3700 5981 7.513781 TGTCATTTCTATGATCTATTCCCTCCA 59.486 37.037 0.00 0.00 42.49 3.86
3764 6045 9.871238 TTAAGTTTTAAAACACAAACCATAGCA 57.129 25.926 28.03 0.11 41.30 3.49
3952 6234 6.712241 AACTCTTCATCGTTGTTGTAGATG 57.288 37.500 0.00 0.00 42.11 2.90
4024 6306 5.060200 CGACAAGTCATACATCTGCATATCG 59.940 44.000 0.72 0.00 0.00 2.92
4090 6372 1.003696 GGCTCTGCTGTAGGAAGGTTT 59.996 52.381 0.00 0.00 0.00 3.27
4261 6543 1.376424 CTGCTCATCGGGTTGCAGT 60.376 57.895 0.00 0.00 45.31 4.40
4345 6627 1.237285 GGCCGAACTTGCAGTGTCAT 61.237 55.000 0.00 0.00 0.00 3.06
4416 6698 7.687941 AACAAAACCACTAACTCATCCATAG 57.312 36.000 0.00 0.00 0.00 2.23
4509 6803 0.752054 AGCACTCTCAGCAGGCTATC 59.248 55.000 0.00 0.00 32.09 2.08
4514 6808 2.687700 ATTACAGCACTCTCAGCAGG 57.312 50.000 0.00 0.00 0.00 4.85
4549 6843 2.354510 CACACAGAACCGAAGAAAAGCA 59.645 45.455 0.00 0.00 0.00 3.91
4573 6867 4.082463 ACACGCGGGATGACAAAAATAAAT 60.082 37.500 19.19 0.00 0.00 1.40
4590 6896 2.098683 GTCGTCGAATAATGTACACGCG 60.099 50.000 3.53 3.53 0.00 6.01
4593 6899 3.795101 CCAGGTCGTCGAATAATGTACAC 59.205 47.826 0.00 0.00 0.00 2.90
4662 6968 4.365514 TCCACCATTGTACTTGACACAT 57.634 40.909 0.00 0.00 37.96 3.21
4962 7275 8.871686 AATGTGAAAAAGACACTAATTGTTCC 57.128 30.769 0.00 0.00 39.17 3.62
4976 7289 5.649557 TGTGACTGGACAAATGTGAAAAAG 58.350 37.500 0.00 0.00 0.00 2.27
4977 7290 5.651387 TGTGACTGGACAAATGTGAAAAA 57.349 34.783 0.00 0.00 0.00 1.94
5066 7394 3.330267 GTGGTCTTTGTAGCCTCTTCTG 58.670 50.000 0.00 0.00 0.00 3.02
5067 7395 2.303311 GGTGGTCTTTGTAGCCTCTTCT 59.697 50.000 0.00 0.00 0.00 2.85
5068 7396 2.038557 TGGTGGTCTTTGTAGCCTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
5069 7397 2.054799 TGGTGGTCTTTGTAGCCTCTT 58.945 47.619 0.00 0.00 0.00 2.85
5070 7398 1.729586 TGGTGGTCTTTGTAGCCTCT 58.270 50.000 0.00 0.00 0.00 3.69
5071 7399 2.561478 TTGGTGGTCTTTGTAGCCTC 57.439 50.000 0.00 0.00 0.00 4.70
5072 7400 2.441750 TCTTTGGTGGTCTTTGTAGCCT 59.558 45.455 0.00 0.00 0.00 4.58
5073 7401 2.858745 TCTTTGGTGGTCTTTGTAGCC 58.141 47.619 0.00 0.00 0.00 3.93
5074 7402 3.440522 GGATCTTTGGTGGTCTTTGTAGC 59.559 47.826 0.00 0.00 0.00 3.58
5075 7403 4.455877 GTGGATCTTTGGTGGTCTTTGTAG 59.544 45.833 0.00 0.00 0.00 2.74
5076 7404 4.141367 TGTGGATCTTTGGTGGTCTTTGTA 60.141 41.667 0.00 0.00 0.00 2.41
5077 7405 3.222603 GTGGATCTTTGGTGGTCTTTGT 58.777 45.455 0.00 0.00 0.00 2.83
5078 7406 3.004734 GTGTGGATCTTTGGTGGTCTTTG 59.995 47.826 0.00 0.00 0.00 2.77
5079 7407 3.222603 GTGTGGATCTTTGGTGGTCTTT 58.777 45.455 0.00 0.00 0.00 2.52
5080 7408 2.174639 TGTGTGGATCTTTGGTGGTCTT 59.825 45.455 0.00 0.00 0.00 3.01
5108 7436 7.094631 AGTAGTCACGTAATTTGCTATGTCAA 58.905 34.615 0.00 0.00 0.00 3.18
5110 7438 7.167136 GGTAGTAGTCACGTAATTTGCTATGTC 59.833 40.741 0.00 0.00 0.00 3.06
5111 7439 6.976925 GGTAGTAGTCACGTAATTTGCTATGT 59.023 38.462 0.00 0.00 0.00 2.29
5179 7510 4.761975 TGTCTTCTTCAGTTTGGTTACGT 58.238 39.130 0.00 0.00 0.00 3.57
5186 7517 4.208047 CGTCAGACTGTCTTCTTCAGTTTG 59.792 45.833 7.77 9.33 44.68 2.93
5201 7532 3.129813 TGCCGTTTATACATCGTCAGACT 59.870 43.478 0.00 0.00 0.00 3.24
5202 7533 3.441163 TGCCGTTTATACATCGTCAGAC 58.559 45.455 0.00 0.00 0.00 3.51
5272 7603 3.057734 AGTTCAAACGACTTCGATGTCC 58.942 45.455 21.74 9.00 43.02 4.02
5273 7604 3.734231 TCAGTTCAAACGACTTCGATGTC 59.266 43.478 18.81 18.81 43.02 3.06
5301 7632 2.281484 TTCAGCAAGACCCGGTGC 60.281 61.111 6.66 6.66 41.22 5.01
5302 7633 0.671781 CTCTTCAGCAAGACCCGGTG 60.672 60.000 0.00 0.00 34.71 4.94
5303 7634 0.832135 TCTCTTCAGCAAGACCCGGT 60.832 55.000 0.00 0.00 34.71 5.28
5304 7635 0.539051 ATCTCTTCAGCAAGACCCGG 59.461 55.000 0.00 0.00 34.71 5.73
5305 7636 1.066573 ACATCTCTTCAGCAAGACCCG 60.067 52.381 0.00 0.00 34.71 5.28
5306 7637 2.235898 AGACATCTCTTCAGCAAGACCC 59.764 50.000 0.00 0.00 34.71 4.46
5307 7638 3.608316 AGACATCTCTTCAGCAAGACC 57.392 47.619 0.00 0.00 34.71 3.85
5308 7639 4.111916 GCTAGACATCTCTTCAGCAAGAC 58.888 47.826 0.00 0.00 34.71 3.01
5309 7640 3.181492 CGCTAGACATCTCTTCAGCAAGA 60.181 47.826 0.00 0.00 37.11 3.02
5310 7641 3.114809 CGCTAGACATCTCTTCAGCAAG 58.885 50.000 0.00 0.00 0.00 4.01
5311 7642 2.493675 ACGCTAGACATCTCTTCAGCAA 59.506 45.455 0.00 0.00 0.00 3.91
5312 7643 2.095461 ACGCTAGACATCTCTTCAGCA 58.905 47.619 0.00 0.00 0.00 4.41
5313 7644 2.861462 ACGCTAGACATCTCTTCAGC 57.139 50.000 0.00 0.00 0.00 4.26
5314 7645 6.499172 TCAAATACGCTAGACATCTCTTCAG 58.501 40.000 0.00 0.00 0.00 3.02
5315 7646 6.451064 TCAAATACGCTAGACATCTCTTCA 57.549 37.500 0.00 0.00 0.00 3.02
5316 7647 5.401079 GCTCAAATACGCTAGACATCTCTTC 59.599 44.000 0.00 0.00 0.00 2.87
5317 7648 5.285651 GCTCAAATACGCTAGACATCTCTT 58.714 41.667 0.00 0.00 0.00 2.85
5318 7649 4.261825 GGCTCAAATACGCTAGACATCTCT 60.262 45.833 0.00 0.00 0.00 3.10
5319 7650 3.984633 GGCTCAAATACGCTAGACATCTC 59.015 47.826 0.00 0.00 0.00 2.75
5320 7651 3.243907 GGGCTCAAATACGCTAGACATCT 60.244 47.826 0.00 0.00 0.00 2.90
5321 7652 3.060602 GGGCTCAAATACGCTAGACATC 58.939 50.000 0.00 0.00 0.00 3.06
5322 7653 2.434336 TGGGCTCAAATACGCTAGACAT 59.566 45.455 0.00 0.00 0.00 3.06
5323 7654 1.828595 TGGGCTCAAATACGCTAGACA 59.171 47.619 0.00 0.00 0.00 3.41
5324 7655 2.596904 TGGGCTCAAATACGCTAGAC 57.403 50.000 0.00 0.00 0.00 2.59
5325 7656 3.133901 TCAATGGGCTCAAATACGCTAGA 59.866 43.478 0.00 0.00 0.00 2.43
5326 7657 3.466836 TCAATGGGCTCAAATACGCTAG 58.533 45.455 0.00 0.00 0.00 3.42
5327 7658 3.552132 TCAATGGGCTCAAATACGCTA 57.448 42.857 0.00 0.00 0.00 4.26
5328 7659 2.418368 TCAATGGGCTCAAATACGCT 57.582 45.000 0.00 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.