Multiple sequence alignment - TraesCS4A01G057700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G057700 chr4A 100.000 6110 0 0 1 6110 48297671 48303780 0.000000e+00 11284.0
1 TraesCS4A01G057700 chr4A 98.919 185 1 1 5898 6081 48303389 48303573 4.570000e-86 329.0
2 TraesCS4A01G057700 chr4A 98.919 185 1 1 5719 5903 48303568 48303751 4.570000e-86 329.0
3 TraesCS4A01G057700 chr4A 89.091 110 10 1 450 557 671947078 671947187 1.070000e-27 135.0
4 TraesCS4A01G057700 chr4A 92.405 79 2 4 577 652 730883545 730883622 6.470000e-20 110.0
5 TraesCS4A01G057700 chr4A 84.848 99 10 4 558 652 660920041 660920138 1.810000e-15 95.3
6 TraesCS4A01G057700 chr4B 92.852 2868 133 37 2419 5259 512164842 512162020 0.000000e+00 4095.0
7 TraesCS4A01G057700 chr4B 92.222 810 49 6 1327 2128 512165901 512165098 0.000000e+00 1134.0
8 TraesCS4A01G057700 chr4B 93.498 646 22 10 691 1333 512166567 512165939 0.000000e+00 942.0
9 TraesCS4A01G057700 chr4B 92.077 467 25 8 1 457 512167123 512166659 0.000000e+00 647.0
10 TraesCS4A01G057700 chr4B 91.188 261 18 4 2179 2435 512165122 512164863 3.500000e-92 350.0
11 TraesCS4A01G057700 chr4B 89.524 105 9 2 455 558 450911786 450911683 1.380000e-26 132.0
12 TraesCS4A01G057700 chr4B 81.553 103 9 10 478 575 213381516 213381419 6.570000e-10 76.8
13 TraesCS4A01G057700 chr4D 92.512 2337 122 28 3583 5903 415291677 415289378 0.000000e+00 3297.0
14 TraesCS4A01G057700 chr4D 93.750 1312 64 8 1331 2628 415294420 415293113 0.000000e+00 1953.0
15 TraesCS4A01G057700 chr4D 95.011 942 39 4 2627 3567 415293009 415292075 0.000000e+00 1472.0
16 TraesCS4A01G057700 chr4D 92.784 485 20 10 852 1334 415294936 415294465 0.000000e+00 688.0
17 TraesCS4A01G057700 chr4D 89.227 427 28 4 1 422 415295856 415295443 9.080000e-143 518.0
18 TraesCS4A01G057700 chr4D 86.441 59 7 1 504 562 106514757 106514814 5.110000e-06 63.9
19 TraesCS4A01G057700 chr1D 86.460 1226 109 21 1645 2855 454170038 454168855 0.000000e+00 1291.0
20 TraesCS4A01G057700 chr1D 95.775 71 1 2 577 647 426619142 426619074 5.010000e-21 113.0
21 TraesCS4A01G057700 chr1D 91.139 79 5 2 573 649 307417050 307416972 8.380000e-19 106.0
22 TraesCS4A01G057700 chr1D 83.099 71 10 2 504 572 38256770 38256700 5.110000e-06 63.9
23 TraesCS4A01G057700 chr2B 86.201 1232 114 17 1637 2855 554721096 554722284 0.000000e+00 1282.0
24 TraesCS4A01G057700 chr2B 90.476 441 41 1 2856 3296 554722316 554722755 1.140000e-161 580.0
25 TraesCS4A01G057700 chr2B 86.143 433 51 7 3562 3989 554727405 554727833 5.580000e-125 459.0
26 TraesCS4A01G057700 chr2B 92.233 103 8 0 1413 1515 554720938 554721040 4.940000e-31 147.0
27 TraesCS4A01G057700 chr2B 88.596 114 12 1 447 560 774262254 774262366 2.970000e-28 137.0
28 TraesCS4A01G057700 chr2B 92.405 79 2 1 573 647 376149254 376149176 6.470000e-20 110.0
29 TraesCS4A01G057700 chr1B 86.052 1226 115 20 1645 2855 624665974 624664790 0.000000e+00 1266.0
30 TraesCS4A01G057700 chr1B 88.696 115 7 5 446 558 92879595 92879485 1.070000e-27 135.0
31 TraesCS4A01G057700 chr1B 88.596 114 8 1 449 557 328825514 328825401 3.840000e-27 134.0
32 TraesCS4A01G057700 chr6B 88.315 890 85 11 2862 3745 462684883 462684007 0.000000e+00 1050.0
33 TraesCS4A01G057700 chr6B 86.239 654 60 10 2216 2855 462685559 462684922 0.000000e+00 682.0
34 TraesCS4A01G057700 chr6B 88.438 320 34 2 1637 1956 462685877 462685561 3.460000e-102 383.0
35 TraesCS4A01G057700 chr6B 86.571 350 35 3 2329 2667 24725777 24726125 5.780000e-100 375.0
36 TraesCS4A01G057700 chr6B 85.202 223 33 0 3770 3992 462683881 462683659 4.760000e-56 230.0
37 TraesCS4A01G057700 chr6B 88.983 118 7 1 447 558 39203611 39203494 2.300000e-29 141.0
38 TraesCS4A01G057700 chr2A 87.714 350 31 3 2329 2667 32807487 32807139 1.230000e-106 398.0
39 TraesCS4A01G057700 chr2A 87.500 112 12 2 449 558 775593435 775593546 1.790000e-25 128.0
40 TraesCS4A01G057700 chr2A 86.087 115 15 1 450 563 389441185 389441071 8.320000e-24 122.0
41 TraesCS4A01G057700 chr5A 87.393 349 31 4 2331 2667 362401251 362400904 7.430000e-104 388.0
42 TraesCS4A01G057700 chr5A 77.855 289 56 7 4397 4681 106748629 106748345 8.140000e-39 172.0
43 TraesCS4A01G057700 chr7D 86.286 350 36 7 2329 2667 565534335 565533987 2.690000e-98 370.0
44 TraesCS4A01G057700 chr7D 88.764 89 3 4 568 650 263033160 263033073 1.080000e-17 102.0
45 TraesCS4A01G057700 chr7D 94.737 38 2 0 5518 5555 583083543 583083506 6.610000e-05 60.2
46 TraesCS4A01G057700 chr2D 87.402 254 20 3 2329 2571 147127325 147127073 1.300000e-71 281.0
47 TraesCS4A01G057700 chr2D 86.220 254 23 3 2329 2571 146752711 146752459 1.310000e-66 265.0
48 TraesCS4A01G057700 chr2D 87.421 159 18 2 2332 2489 343097468 343097311 1.350000e-41 182.0
49 TraesCS4A01G057700 chr2D 91.139 79 3 1 573 647 199881413 199881335 3.010000e-18 104.0
50 TraesCS4A01G057700 chr6D 82.769 325 39 7 2358 2668 448384114 448383793 2.170000e-69 274.0
51 TraesCS4A01G057700 chr6D 84.746 59 8 1 504 562 318541507 318541564 2.380000e-04 58.4
52 TraesCS4A01G057700 chr5B 77.370 327 66 6 4390 4713 105770379 105770700 2.910000e-43 187.0
53 TraesCS4A01G057700 chr5B 77.966 295 57 6 4390 4681 103572191 103572480 1.750000e-40 178.0
54 TraesCS4A01G057700 chr5D 78.157 293 60 3 4390 4681 97325668 97325957 3.760000e-42 183.0
55 TraesCS4A01G057700 chr5D 94.521 73 4 0 574 646 524448474 524448546 5.010000e-21 113.0
56 TraesCS4A01G057700 chr5D 85.714 70 9 1 504 572 538584728 538584659 8.500000e-09 73.1
57 TraesCS4A01G057700 chr7A 87.156 109 13 1 450 558 657371868 657371975 8.320000e-24 122.0
58 TraesCS4A01G057700 chr7A 92.105 76 5 1 573 647 576445229 576445304 8.380000e-19 106.0
59 TraesCS4A01G057700 chr7A 92.105 76 5 1 573 647 658646933 658646858 8.380000e-19 106.0
60 TraesCS4A01G057700 chr7A 84.000 75 9 3 504 576 442265808 442265735 1.100000e-07 69.4
61 TraesCS4A01G057700 chr7B 95.890 73 3 0 576 648 590117672 590117744 1.080000e-22 119.0
62 TraesCS4A01G057700 chr7B 93.333 75 3 2 577 650 649986283 649986210 6.470000e-20 110.0
63 TraesCS4A01G057700 chr7B 91.250 80 6 1 576 654 740046400 740046479 2.330000e-19 108.0
64 TraesCS4A01G057700 chr7B 82.114 123 13 2 448 562 401045478 401045599 5.040000e-16 97.1
65 TraesCS4A01G057700 chr7B 83.784 74 7 5 504 576 519266866 519266935 1.420000e-06 65.8
66 TraesCS4A01G057700 chr3B 94.595 74 3 1 573 646 765604895 765604967 5.010000e-21 113.0
67 TraesCS4A01G057700 chr3B 84.722 72 8 3 504 575 299461121 299461053 1.100000e-07 69.4
68 TraesCS4A01G057700 chr3A 90.588 85 4 2 563 647 235824878 235824958 6.470000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G057700 chr4A 48297671 48303780 6109 False 3980.666667 11284 99.279333 1 6110 3 chr4A.!!$F4 6109
1 TraesCS4A01G057700 chr4B 512162020 512167123 5103 True 1433.600000 4095 92.367400 1 5259 5 chr4B.!!$R3 5258
2 TraesCS4A01G057700 chr4D 415289378 415295856 6478 True 1585.600000 3297 92.656800 1 5903 5 chr4D.!!$R1 5902
3 TraesCS4A01G057700 chr1D 454168855 454170038 1183 True 1291.000000 1291 86.460000 1645 2855 1 chr1D.!!$R4 1210
4 TraesCS4A01G057700 chr2B 554720938 554722755 1817 False 669.666667 1282 89.636667 1413 3296 3 chr2B.!!$F3 1883
5 TraesCS4A01G057700 chr1B 624664790 624665974 1184 True 1266.000000 1266 86.052000 1645 2855 1 chr1B.!!$R3 1210
6 TraesCS4A01G057700 chr6B 462683659 462685877 2218 True 586.250000 1050 87.048500 1637 3992 4 chr6B.!!$R2 2355

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 146 0.179073 CGTGCCTGGAGGGAATACAG 60.179 60.000 0.00 0.00 39.92 2.74 F
673 830 0.455464 TCTATTCACACACGACGGCG 60.455 55.000 10.39 10.39 44.79 6.46 F
1572 1874 1.464687 CCGCTTCTCGTTGCTGAATTG 60.465 52.381 0.00 0.00 36.19 2.32 F
2008 2312 1.032014 CACAGGGTGTTGGAAGTTGG 58.968 55.000 0.00 0.00 0.00 3.77 F
2524 2884 1.277557 AGCTGGAATTTCAGAGCGACT 59.722 47.619 18.45 1.42 36.93 4.18 F
4284 5301 0.411058 AGGCTGGCATTTCCTTCCTT 59.589 50.000 3.38 0.00 34.95 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 2129 0.805711 TCGCATAGTCGGACGTCGTA 60.806 55.000 9.92 0.00 40.32 3.43 R
1834 2136 1.721664 CCGGTCTTCGCATAGTCGGA 61.722 60.000 0.00 0.00 36.18 4.55 R
3196 3705 0.674895 AATCTCCGAGGTGCTTGCAC 60.675 55.000 16.50 16.50 0.00 4.57 R
3380 3889 2.472695 TCATACTGGTGAAGTGGCAC 57.527 50.000 10.29 10.29 40.26 5.01 R
4397 5414 1.855360 CGTAGTCCGTCGAGTACCTAC 59.145 57.143 0.00 0.00 40.49 3.18 R
5878 6902 0.109272 CTTCTCGTGAAGGCGCACTA 60.109 55.000 17.47 0.00 44.33 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 96 4.142049 ACTCTGCTGAAGCTTATGGACTAC 60.142 45.833 0.00 0.00 42.66 2.73
105 111 2.632996 GGACTACGGGGATGATGATGAA 59.367 50.000 0.00 0.00 0.00 2.57
108 114 3.576118 ACTACGGGGATGATGATGAAGAG 59.424 47.826 0.00 0.00 0.00 2.85
140 146 0.179073 CGTGCCTGGAGGGAATACAG 60.179 60.000 0.00 0.00 39.92 2.74
160 166 4.730487 CCCAGTTCAGGGCAGAAG 57.270 61.111 0.00 0.00 43.10 2.85
172 178 2.331265 GCAGAAGCCGTTTTGGTCT 58.669 52.632 0.00 0.00 41.21 3.85
238 244 0.964700 TGCGGTGAATTGGAAATGCA 59.035 45.000 0.00 0.00 0.00 3.96
249 255 1.630369 TGGAAATGCAGGTAGACAGCT 59.370 47.619 0.00 0.00 0.00 4.24
251 257 3.263170 TGGAAATGCAGGTAGACAGCTTA 59.737 43.478 0.00 0.00 0.00 3.09
313 321 5.791974 CGTTGAGCTTGTCATTTTGTATCAG 59.208 40.000 0.00 0.00 34.17 2.90
372 380 3.753272 ACGTGATTTTCCCATCTGAAGTG 59.247 43.478 0.00 0.00 0.00 3.16
377 385 2.479566 TTCCCATCTGAAGTGCAGTC 57.520 50.000 0.00 0.00 45.14 3.51
410 420 5.447818 GCATGGTTCCTTGAGTATTCTTTCG 60.448 44.000 8.59 0.00 0.00 3.46
418 428 9.667107 TTCCTTGAGTATTCTTTCGATATGTTT 57.333 29.630 0.00 0.00 0.00 2.83
457 564 5.593010 CTGTTAGCATTGTACTACTCCCTC 58.407 45.833 0.00 0.00 0.00 4.30
458 565 4.404715 TGTTAGCATTGTACTACTCCCTCC 59.595 45.833 0.00 0.00 0.00 4.30
459 566 2.032620 AGCATTGTACTACTCCCTCCG 58.967 52.381 0.00 0.00 0.00 4.63
460 567 1.755380 GCATTGTACTACTCCCTCCGT 59.245 52.381 0.00 0.00 0.00 4.69
461 568 2.167900 GCATTGTACTACTCCCTCCGTT 59.832 50.000 0.00 0.00 0.00 4.44
462 569 3.737355 GCATTGTACTACTCCCTCCGTTC 60.737 52.174 0.00 0.00 0.00 3.95
463 570 3.446442 TTGTACTACTCCCTCCGTTCT 57.554 47.619 0.00 0.00 0.00 3.01
464 571 4.574674 TTGTACTACTCCCTCCGTTCTA 57.425 45.455 0.00 0.00 0.00 2.10
465 572 4.574674 TGTACTACTCCCTCCGTTCTAA 57.425 45.455 0.00 0.00 0.00 2.10
468 575 5.954150 TGTACTACTCCCTCCGTTCTAAATT 59.046 40.000 0.00 0.00 0.00 1.82
470 577 7.781693 TGTACTACTCCCTCCGTTCTAAATTAT 59.218 37.037 0.00 0.00 0.00 1.28
471 578 7.672122 ACTACTCCCTCCGTTCTAAATTATT 57.328 36.000 0.00 0.00 0.00 1.40
475 582 6.822170 ACTCCCTCCGTTCTAAATTATTTGTC 59.178 38.462 0.00 0.00 0.00 3.18
476 583 6.954232 TCCCTCCGTTCTAAATTATTTGTCT 58.046 36.000 0.00 0.00 0.00 3.41
477 584 7.399634 TCCCTCCGTTCTAAATTATTTGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
478 585 7.335924 TCCCTCCGTTCTAAATTATTTGTCTTG 59.664 37.037 0.00 0.00 0.00 3.02
479 586 7.415206 CCCTCCGTTCTAAATTATTTGTCTTGG 60.415 40.741 0.00 0.00 0.00 3.61
480 587 7.335924 CCTCCGTTCTAAATTATTTGTCTTGGA 59.664 37.037 0.00 2.35 0.00 3.53
481 588 8.801882 TCCGTTCTAAATTATTTGTCTTGGAT 57.198 30.769 0.00 0.00 0.00 3.41
482 589 9.238368 TCCGTTCTAAATTATTTGTCTTGGATT 57.762 29.630 0.00 0.00 0.00 3.01
483 590 9.855021 CCGTTCTAAATTATTTGTCTTGGATTT 57.145 29.630 0.00 0.00 0.00 2.17
494 601 7.827819 TTTGTCTTGGATTTGTCTAGATACG 57.172 36.000 0.00 0.00 0.00 3.06
495 602 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
496 603 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
497 604 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
498 605 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
499 606 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
500 607 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
501 608 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
522 629 8.326680 TGTATCGATACATCCGTATTTAGACA 57.673 34.615 29.79 8.13 38.48 3.41
523 630 8.785946 TGTATCGATACATCCGTATTTAGACAA 58.214 33.333 29.79 5.34 38.48 3.18
524 631 9.616634 GTATCGATACATCCGTATTTAGACAAA 57.383 33.333 26.86 0.00 38.48 2.83
526 633 8.738199 TCGATACATCCGTATTTAGACAAATC 57.262 34.615 0.00 0.00 38.48 2.17
527 634 8.573885 TCGATACATCCGTATTTAGACAAATCT 58.426 33.333 0.00 0.00 38.48 2.40
528 635 9.836076 CGATACATCCGTATTTAGACAAATCTA 57.164 33.333 0.00 0.00 38.48 1.98
532 639 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
533 640 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
535 642 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
536 643 9.367444 CCGTATTTAGACAAATCTAAGACAAGT 57.633 33.333 9.81 0.00 45.93 3.16
542 649 9.622004 TTAGACAAATCTAAGACAAGTAACTCG 57.378 33.333 0.00 0.00 41.58 4.18
543 650 7.091443 AGACAAATCTAAGACAAGTAACTCGG 58.909 38.462 0.00 0.00 31.46 4.63
544 651 6.989659 ACAAATCTAAGACAAGTAACTCGGA 58.010 36.000 0.00 0.00 0.00 4.55
545 652 7.439381 ACAAATCTAAGACAAGTAACTCGGAA 58.561 34.615 0.00 0.00 0.00 4.30
546 653 7.384387 ACAAATCTAAGACAAGTAACTCGGAAC 59.616 37.037 0.00 0.00 0.00 3.62
572 679 5.874895 GGGAGTACCTTTTGTGTACAATC 57.125 43.478 0.00 0.00 40.79 2.67
573 680 5.310451 GGGAGTACCTTTTGTGTACAATCA 58.690 41.667 0.00 0.00 40.79 2.57
574 681 5.766174 GGGAGTACCTTTTGTGTACAATCAA 59.234 40.000 0.00 0.00 40.79 2.57
575 682 6.263617 GGGAGTACCTTTTGTGTACAATCAAA 59.736 38.462 0.00 2.02 40.79 2.69
576 683 7.039993 GGGAGTACCTTTTGTGTACAATCAAAT 60.040 37.037 11.22 2.06 40.79 2.32
581 688 7.882179 ACCTTTTGTGTACAATCAAATACTCC 58.118 34.615 11.22 0.00 35.55 3.85
585 692 5.741011 TGTGTACAATCAAATACTCCCTCC 58.259 41.667 0.00 0.00 0.00 4.30
591 698 2.542550 TCAAATACTCCCTCCGTTCCA 58.457 47.619 0.00 0.00 0.00 3.53
597 704 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
603 710 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
604 711 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
605 712 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
606 713 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
607 714 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
608 715 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
609 716 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
610 717 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
611 718 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
612 719 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
613 720 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
653 810 8.495160 TTTGGAACGGAGGGAGTATAATATAA 57.505 34.615 0.00 0.00 0.00 0.98
673 830 0.455464 TCTATTCACACACGACGGCG 60.455 55.000 10.39 10.39 44.79 6.46
679 836 4.728102 CACACGACGGCGGCCTTA 62.728 66.667 18.49 0.00 43.17 2.69
682 839 4.430765 ACGACGGCGGCCTTACAG 62.431 66.667 18.49 3.14 43.17 2.74
684 841 4.452733 GACGGCGGCCTTACAGCT 62.453 66.667 18.34 0.00 39.71 4.24
689 846 4.855105 CGGCCTTACAGCTGCATA 57.145 55.556 15.27 0.00 31.10 3.14
721 932 2.496111 TGCCGTTTGGAATACGAGTTT 58.504 42.857 0.00 0.00 41.33 2.66
723 934 2.413634 GCCGTTTGGAATACGAGTTTGG 60.414 50.000 0.00 0.00 41.33 3.28
724 935 2.809696 CCGTTTGGAATACGAGTTTGGT 59.190 45.455 0.00 0.00 41.33 3.67
799 1010 3.740397 CACATGGCACGGCACCTG 61.740 66.667 0.00 0.00 0.00 4.00
801 1012 3.129502 CATGGCACGGCACCTGAG 61.130 66.667 0.00 0.00 0.00 3.35
806 1017 3.716006 CACGGCACCTGAGCGTTG 61.716 66.667 0.00 0.00 34.64 4.10
807 1018 4.235762 ACGGCACCTGAGCGTTGT 62.236 61.111 0.00 0.00 34.64 3.32
817 1028 3.070018 CCTGAGCGTTGTTCTCATCTTT 58.930 45.455 0.00 0.00 39.56 2.52
823 1034 4.021016 AGCGTTGTTCTCATCTTTACCTCT 60.021 41.667 0.00 0.00 0.00 3.69
824 1035 4.327627 GCGTTGTTCTCATCTTTACCTCTC 59.672 45.833 0.00 0.00 0.00 3.20
825 1036 5.715070 CGTTGTTCTCATCTTTACCTCTCT 58.285 41.667 0.00 0.00 0.00 3.10
938 1184 5.815740 TCCATAAAACTATTGACTCGCTTCC 59.184 40.000 0.00 0.00 0.00 3.46
952 1198 5.334421 ACTCGCTTCCCCTATTAGTATCAT 58.666 41.667 0.00 0.00 0.00 2.45
953 1199 5.419471 ACTCGCTTCCCCTATTAGTATCATC 59.581 44.000 0.00 0.00 0.00 2.92
955 1201 5.419155 TCGCTTCCCCTATTAGTATCATCAG 59.581 44.000 0.00 0.00 0.00 2.90
985 1231 2.672961 TATAGTGTGCTGCTGTGGTC 57.327 50.000 0.00 0.00 0.00 4.02
1052 1298 3.823330 GCTGGTGCATCTGCTGGC 61.823 66.667 20.45 3.04 42.66 4.85
1310 1556 6.200100 GTCAATCAGTATCAGTACCAGTACG 58.800 44.000 2.43 0.00 40.80 3.67
1337 1631 5.475220 TGTAGCTGCTGATAGATAGAGAACC 59.525 44.000 13.43 0.00 0.00 3.62
1511 1810 5.123820 TGCTAATTTCAGGTAAGATGCACAC 59.876 40.000 0.00 0.00 0.00 3.82
1518 1817 2.084546 GGTAAGATGCACACCTTGACC 58.915 52.381 7.78 7.62 0.00 4.02
1531 1833 2.181975 CCTTGACCATGATTTGCCCTT 58.818 47.619 0.00 0.00 0.00 3.95
1534 1836 1.894466 TGACCATGATTTGCCCTTGTG 59.106 47.619 0.00 0.00 0.00 3.33
1553 1855 6.073003 CCTTGTGTGACAGTTTATTCTTCTCC 60.073 42.308 0.00 0.00 0.00 3.71
1572 1874 1.464687 CCGCTTCTCGTTGCTGAATTG 60.465 52.381 0.00 0.00 36.19 2.32
1602 1904 7.366513 GCTTCATTAAGAGAGCAGAAAAGTTT 58.633 34.615 0.00 0.00 34.37 2.66
1801 2103 9.610705 ACATATGCTGAATAATGAGGTATCATC 57.389 33.333 1.58 0.00 45.67 2.92
1827 2129 4.955450 TGGCAGTTCCAATATGCAAACTAT 59.045 37.500 0.00 0.00 43.21 2.12
1834 2136 5.593968 TCCAATATGCAAACTATACGACGT 58.406 37.500 5.52 5.52 0.00 4.34
1923 2226 2.559698 TCGCATTGTTTTCTGGAGGA 57.440 45.000 0.00 0.00 0.00 3.71
1936 2239 6.433847 TTTCTGGAGGACTCTCAAATGTAA 57.566 37.500 0.00 0.00 41.69 2.41
1941 2245 5.105877 TGGAGGACTCTCAAATGTAAGTACG 60.106 44.000 0.00 0.00 41.69 3.67
2008 2312 1.032014 CACAGGGTGTTGGAAGTTGG 58.968 55.000 0.00 0.00 0.00 3.77
2014 2318 1.681264 GGTGTTGGAAGTTGGAACTGG 59.319 52.381 0.00 0.00 39.66 4.00
2026 2330 3.417069 TGGAACTGGACATCGTTCATT 57.583 42.857 0.00 0.00 40.88 2.57
2027 2331 3.750371 TGGAACTGGACATCGTTCATTT 58.250 40.909 0.00 0.00 40.88 2.32
2111 2419 5.739752 GCCAATGCTGTTTTTCTTTTCTT 57.260 34.783 0.00 0.00 33.53 2.52
2228 2536 2.352960 GTGCTTGCTCTAACATGGCTAC 59.647 50.000 0.00 0.00 0.00 3.58
2240 2548 4.708726 ACATGGCTACTTGCATCTTTTC 57.291 40.909 0.00 0.00 45.15 2.29
2524 2884 1.277557 AGCTGGAATTTCAGAGCGACT 59.722 47.619 18.45 1.42 36.93 4.18
2572 2932 9.352191 TCAGATAGTTCTCATTTAGGGTAGTAC 57.648 37.037 0.00 0.00 0.00 2.73
2646 3111 5.531122 AATATGTTCCTAGCGCTTCTGTA 57.469 39.130 18.68 0.00 0.00 2.74
2738 3210 6.085555 ACATGGACAAGTGGATATAGTACG 57.914 41.667 0.00 0.00 0.00 3.67
2859 3364 8.598202 TGGTCAGTAACTCTTACCATGTATAA 57.402 34.615 0.00 0.00 43.15 0.98
2860 3365 8.472413 TGGTCAGTAACTCTTACCATGTATAAC 58.528 37.037 0.00 0.00 43.15 1.89
2875 3380 8.044908 ACCATGTATAACGGAACTAACATCTTT 58.955 33.333 0.00 0.00 0.00 2.52
2957 3466 9.526713 CAGTTCTTATAGTATATAGCATGGCAG 57.473 37.037 0.00 0.00 0.00 4.85
2979 3488 5.578336 CAGAGTTCTGAATGAAGCACGATTA 59.422 40.000 2.97 0.00 46.59 1.75
2987 3496 4.835199 ATGAAGCACGATTAACACGTAC 57.165 40.909 8.76 4.65 42.07 3.67
2999 3508 7.487189 ACGATTAACACGTACCTTCTGATTAAG 59.513 37.037 7.58 0.00 42.17 1.85
3049 3558 7.962995 TTATTATGATTTTACAACAGGCCCA 57.037 32.000 0.00 0.00 0.00 5.36
3097 3606 5.050091 CGATCCTGGTTTCATACATACAAGC 60.050 44.000 0.00 0.00 0.00 4.01
3133 3642 9.794719 GACCTATGGCCTAATCTTAAGTAAATT 57.205 33.333 3.32 0.00 0.00 1.82
3151 3660 8.863872 AGTAAATTAGTGTTCATAAGCTTGGT 57.136 30.769 9.86 0.00 0.00 3.67
3380 3889 1.691196 TTTGGGCAAGGTGAGTTCTG 58.309 50.000 0.00 0.00 0.00 3.02
3479 3989 8.958060 AGATTACTGATTAGCCTATGGAAGTA 57.042 34.615 0.00 0.00 0.00 2.24
3492 4003 5.471456 CCTATGGAAGTATTTCATGGCAGAC 59.529 44.000 0.03 0.00 34.90 3.51
3775 4780 9.807921 ACAAGAGAAATTTGTTAGGAGGAAATA 57.192 29.630 0.00 0.00 35.32 1.40
3806 4811 2.888834 TTTTTCTGCCTGGCTTCAAC 57.111 45.000 21.03 0.00 0.00 3.18
4011 5016 1.331214 CACAGGTTGAACCCATTGCT 58.669 50.000 11.41 0.00 39.75 3.91
4017 5022 3.153919 GGTTGAACCCATTGCTTCTACA 58.846 45.455 2.08 0.00 30.04 2.74
4049 5054 1.202891 GGTGGCAAGGTACTCCAACTT 60.203 52.381 0.00 0.00 37.11 2.66
4069 5080 7.362920 CCAACTTAGTGACAATAGAAAATGGGG 60.363 40.741 0.00 0.00 0.00 4.96
4071 5082 7.924541 ACTTAGTGACAATAGAAAATGGGGTA 58.075 34.615 0.00 0.00 0.00 3.69
4074 5085 7.462571 AGTGACAATAGAAAATGGGGTAAAC 57.537 36.000 0.00 0.00 0.00 2.01
4112 5123 3.891422 AGGCTCTGTTCTTCTCTGATG 57.109 47.619 0.00 0.00 0.00 3.07
4200 5217 4.680537 ACTCTGGACTCGGGCGGT 62.681 66.667 0.00 0.00 0.00 5.68
4283 5300 1.064389 GTAGGCTGGCATTTCCTTCCT 60.064 52.381 3.38 0.00 39.44 3.36
4284 5301 0.411058 AGGCTGGCATTTCCTTCCTT 59.589 50.000 3.38 0.00 34.95 3.36
4285 5302 1.203225 AGGCTGGCATTTCCTTCCTTT 60.203 47.619 3.38 0.00 34.95 3.11
4342 5359 6.845758 ACATGTCTCCAATCACATTTGAAT 57.154 33.333 0.00 0.00 34.61 2.57
4346 5363 6.479006 TGTCTCCAATCACATTTGAATCTCT 58.521 36.000 0.00 0.00 34.61 3.10
4347 5364 6.944290 TGTCTCCAATCACATTTGAATCTCTT 59.056 34.615 0.00 0.00 34.61 2.85
4354 5371 9.932699 CAATCACATTTGAATCTCTTCTCATAC 57.067 33.333 0.00 0.00 34.61 2.39
4359 5376 8.316946 ACATTTGAATCTCTTCTCATACAGTCA 58.683 33.333 0.00 0.00 32.29 3.41
4361 5378 5.900425 TGAATCTCTTCTCATACAGTCAGC 58.100 41.667 0.00 0.00 32.29 4.26
4383 5400 4.244066 CACTCATGATCATCGATCCTTCC 58.756 47.826 4.86 0.00 38.20 3.46
4384 5401 4.021280 CACTCATGATCATCGATCCTTCCT 60.021 45.833 4.86 0.00 38.20 3.36
4385 5402 4.592351 ACTCATGATCATCGATCCTTCCTT 59.408 41.667 4.86 0.00 38.20 3.36
4386 5403 5.144692 TCATGATCATCGATCCTTCCTTC 57.855 43.478 4.86 0.00 38.20 3.46
4389 5406 3.004839 TGATCATCGATCCTTCCTTCGAC 59.995 47.826 0.00 0.00 46.03 4.20
4397 5414 1.618837 TCCTTCCTTCGACCTTCTGTG 59.381 52.381 0.00 0.00 0.00 3.66
4704 5721 3.112709 GAGCGAACGTGCCCAGTC 61.113 66.667 0.00 0.00 34.65 3.51
4725 5742 2.417936 GAGGTACGCAGCTAGCCC 59.582 66.667 12.13 4.01 41.38 5.19
4727 5744 3.155167 GGTACGCAGCTAGCCCCT 61.155 66.667 12.13 0.00 41.38 4.79
4728 5745 2.107141 GTACGCAGCTAGCCCCTG 59.893 66.667 12.13 4.41 41.38 4.45
4733 5750 2.767496 CAGCTAGCCCCTGCCTCT 60.767 66.667 12.13 0.00 38.69 3.69
4734 5751 2.767496 AGCTAGCCCCTGCCTCTG 60.767 66.667 12.13 0.00 38.69 3.35
4735 5752 4.560743 GCTAGCCCCTGCCTCTGC 62.561 72.222 2.29 0.00 38.69 4.26
4736 5753 3.871395 CTAGCCCCTGCCTCTGCC 61.871 72.222 0.00 0.00 38.69 4.85
4737 5754 4.421554 TAGCCCCTGCCTCTGCCT 62.422 66.667 0.00 0.00 38.69 4.75
4748 5765 1.153208 CTCTGCCTCTGTCCATGGC 60.153 63.158 6.96 2.72 46.26 4.40
4782 5799 3.342370 CTCACGCTAGCTCACGGCA 62.342 63.158 13.93 0.00 44.79 5.69
4786 5803 4.537433 GCTAGCTCACGGCAGGGG 62.537 72.222 7.70 0.00 44.79 4.79
4787 5804 3.077556 CTAGCTCACGGCAGGGGT 61.078 66.667 0.00 0.00 44.79 4.95
4788 5805 3.075005 TAGCTCACGGCAGGGGTC 61.075 66.667 0.00 0.00 44.79 4.46
4793 5810 2.113139 CACGGCAGGGGTCTTTGT 59.887 61.111 0.00 0.00 0.00 2.83
4983 6000 1.525077 GGCCTTCAACCACACGACA 60.525 57.895 0.00 0.00 0.00 4.35
5064 6081 2.873288 GACTACCGCGACGTCCTT 59.127 61.111 8.23 0.00 0.00 3.36
5106 6123 4.722700 AGCACCACCATGGCGTCC 62.723 66.667 13.04 0.00 42.67 4.79
5108 6125 2.986290 CACCACCATGGCGTCCTA 59.014 61.111 13.04 0.00 42.67 2.94
5109 6126 1.153369 CACCACCATGGCGTCCTAG 60.153 63.158 13.04 0.00 42.67 3.02
5113 6132 2.028190 CCATGGCGTCCTAGAGCG 59.972 66.667 0.00 0.00 0.00 5.03
5209 6228 8.090831 TGATACTTGGATAGATATGCAGTGTTC 58.909 37.037 0.00 0.00 35.44 3.18
5210 6229 6.239217 ACTTGGATAGATATGCAGTGTTCA 57.761 37.500 0.00 0.00 35.44 3.18
5217 6236 8.090831 GGATAGATATGCAGTGTTCAGTTCATA 58.909 37.037 0.00 3.40 0.00 2.15
5222 6241 5.151297 TGCAGTGTTCAGTTCATAGATGA 57.849 39.130 0.00 0.00 34.44 2.92
5224 6243 5.174395 GCAGTGTTCAGTTCATAGATGACT 58.826 41.667 0.00 0.00 36.36 3.41
5243 6262 0.322816 TGAGAAACCCATGCAGAGGC 60.323 55.000 4.72 0.00 41.68 4.70
5248 6267 1.244019 AACCCATGCAGAGGCGTTTC 61.244 55.000 4.72 0.00 45.35 2.78
5251 6270 1.699656 CCATGCAGAGGCGTTTCGAG 61.700 60.000 0.00 0.00 45.35 4.04
5370 6393 9.956720 GACATGTTTTCATATCCCTGATTAAAG 57.043 33.333 0.00 0.00 38.64 1.85
5384 6407 9.974980 TCCCTGATTAAAGAAAACATTAAACAC 57.025 29.630 0.00 0.00 0.00 3.32
5419 6442 9.751542 ATACAAAACAATGTTCGTGGATTTAAA 57.248 25.926 0.00 0.00 34.75 1.52
5489 6512 8.117813 TCCTGAACTATAAAAATGTTCCCAAC 57.882 34.615 0.00 0.00 39.24 3.77
5501 6524 2.375174 TGTTCCCAACTAGAGCATTGGT 59.625 45.455 0.00 0.00 43.36 3.67
5509 6532 6.095377 CCAACTAGAGCATTGGTGAATTTTC 58.905 40.000 0.00 0.00 40.51 2.29
5515 6538 7.486802 AGAGCATTGGTGAATTTTCAAAAAG 57.513 32.000 0.00 0.00 39.21 2.27
5519 6542 7.122501 AGCATTGGTGAATTTTCAAAAAGGTTT 59.877 29.630 0.00 0.00 39.21 3.27
5538 6561 7.940178 AGGTTTCCGAATTTAAAACATGTTC 57.060 32.000 12.39 0.00 35.17 3.18
5581 6604 7.711846 TCCCATATTTCATAAATGTTTCACGG 58.288 34.615 0.00 0.00 32.38 4.94
5588 6611 8.879342 TTTCATAAATGTTTCACGGATTTGTT 57.121 26.923 0.00 0.00 0.00 2.83
5598 6621 7.650104 TGTTTCACGGATTTGTTAATTTTCCTC 59.350 33.333 0.00 0.00 0.00 3.71
5693 6717 7.861629 AGACACAGTATAATTCTCCATGGAAA 58.138 34.615 17.00 13.11 0.00 3.13
5715 6739 1.100510 TCTAGACCATCCGAACACCG 58.899 55.000 0.00 0.00 38.18 4.94
5729 6753 0.476771 ACACCGGTGGGAAAAGACAT 59.523 50.000 36.47 10.42 36.97 3.06
5740 6764 4.217550 TGGGAAAAGACATAAGAAAAGCCG 59.782 41.667 0.00 0.00 0.00 5.52
5742 6766 4.457949 GGAAAAGACATAAGAAAAGCCGGA 59.542 41.667 5.05 0.00 0.00 5.14
5766 6790 1.001641 GCCAGCCCATTGAGAGTGT 60.002 57.895 0.00 0.00 0.00 3.55
5795 6819 3.738982 CTCGGGGTGCATTTATGTATCA 58.261 45.455 0.00 0.00 0.00 2.15
5805 6829 7.255312 GGTGCATTTATGTATCAACCCGAAATA 60.255 37.037 0.00 0.00 0.00 1.40
5808 6832 8.349983 GCATTTATGTATCAACCCGAAATAACT 58.650 33.333 0.00 0.00 0.00 2.24
5836 6860 9.691362 ACTAATTATGGTGTACTTTTTGCAAAG 57.309 29.630 12.41 4.16 44.57 2.77
5839 6863 4.810191 TGGTGTACTTTTTGCAAAGGTT 57.190 36.364 19.69 8.79 43.47 3.50
5844 6868 5.975344 GTGTACTTTTTGCAAAGGTTACTCC 59.025 40.000 19.69 10.56 43.47 3.85
5846 6870 4.027437 ACTTTTTGCAAAGGTTACTCCCA 58.973 39.130 12.41 0.00 43.47 4.37
5851 6875 1.351350 GCAAAGGTTACTCCCACCTCT 59.649 52.381 0.00 0.00 44.48 3.69
5857 6881 3.108376 GGTTACTCCCACCTCTTCAGAT 58.892 50.000 0.00 0.00 0.00 2.90
5860 6884 1.912043 ACTCCCACCTCTTCAGATTGG 59.088 52.381 0.00 0.00 0.00 3.16
5881 6905 5.693961 TGGGACAAATGATGCACATATAGT 58.306 37.500 0.00 0.00 38.38 2.12
5882 6906 5.532032 TGGGACAAATGATGCACATATAGTG 59.468 40.000 0.00 0.00 44.16 2.74
5892 6916 1.522676 CACATATAGTGCGCCTTCACG 59.477 52.381 4.18 0.00 42.15 4.35
5893 6917 1.407618 ACATATAGTGCGCCTTCACGA 59.592 47.619 4.18 0.00 41.61 4.35
5894 6918 2.054363 CATATAGTGCGCCTTCACGAG 58.946 52.381 4.18 0.00 41.61 4.18
5895 6919 1.385528 TATAGTGCGCCTTCACGAGA 58.614 50.000 4.18 0.00 41.61 4.04
5896 6920 0.530744 ATAGTGCGCCTTCACGAGAA 59.469 50.000 4.18 0.00 41.61 2.87
5907 6931 3.728845 CTTCACGAGAAGGGAAAAGACA 58.271 45.455 14.07 0.00 46.01 3.41
5908 6932 4.319177 CTTCACGAGAAGGGAAAAGACAT 58.681 43.478 14.07 0.00 46.01 3.06
5909 6933 5.477607 TTCACGAGAAGGGAAAAGACATA 57.522 39.130 0.00 0.00 39.74 2.29
5910 6934 5.477607 TCACGAGAAGGGAAAAGACATAA 57.522 39.130 0.00 0.00 0.00 1.90
5911 6935 5.479306 TCACGAGAAGGGAAAAGACATAAG 58.521 41.667 0.00 0.00 0.00 1.73
5912 6936 5.245301 TCACGAGAAGGGAAAAGACATAAGA 59.755 40.000 0.00 0.00 0.00 2.10
5913 6937 5.932303 CACGAGAAGGGAAAAGACATAAGAA 59.068 40.000 0.00 0.00 0.00 2.52
5914 6938 6.426937 CACGAGAAGGGAAAAGACATAAGAAA 59.573 38.462 0.00 0.00 0.00 2.52
5915 6939 6.996282 ACGAGAAGGGAAAAGACATAAGAAAA 59.004 34.615 0.00 0.00 0.00 2.29
5916 6940 7.173390 ACGAGAAGGGAAAAGACATAAGAAAAG 59.827 37.037 0.00 0.00 0.00 2.27
5917 6941 7.220741 AGAAGGGAAAAGACATAAGAAAAGC 57.779 36.000 0.00 0.00 0.00 3.51
5918 6942 5.984695 AGGGAAAAGACATAAGAAAAGCC 57.015 39.130 0.00 0.00 0.00 4.35
5919 6943 5.393866 AGGGAAAAGACATAAGAAAAGCCA 58.606 37.500 0.00 0.00 0.00 4.75
5920 6944 5.478332 AGGGAAAAGACATAAGAAAAGCCAG 59.522 40.000 0.00 0.00 0.00 4.85
5921 6945 5.476945 GGGAAAAGACATAAGAAAAGCCAGA 59.523 40.000 0.00 0.00 0.00 3.86
5922 6946 6.015434 GGGAAAAGACATAAGAAAAGCCAGAA 60.015 38.462 0.00 0.00 0.00 3.02
5923 6947 7.433680 GGAAAAGACATAAGAAAAGCCAGAAA 58.566 34.615 0.00 0.00 0.00 2.52
5924 6948 8.090831 GGAAAAGACATAAGAAAAGCCAGAAAT 58.909 33.333 0.00 0.00 0.00 2.17
5925 6949 8.822652 AAAAGACATAAGAAAAGCCAGAAATG 57.177 30.769 0.00 0.00 0.00 2.32
5926 6950 6.521151 AGACATAAGAAAAGCCAGAAATGG 57.479 37.500 0.00 0.00 0.00 3.16
5927 6951 5.420104 AGACATAAGAAAAGCCAGAAATGGG 59.580 40.000 0.00 0.00 0.00 4.00
5933 6957 3.464494 GCCAGAAATGGGCCAGCC 61.464 66.667 13.78 0.00 45.87 4.85
5943 6967 2.679716 GGCCAGCCCATTGAGAGT 59.320 61.111 0.00 0.00 0.00 3.24
5944 6968 1.751927 GGCCAGCCCATTGAGAGTG 60.752 63.158 0.00 0.00 0.00 3.51
5945 6969 1.001641 GCCAGCCCATTGAGAGTGT 60.002 57.895 0.00 0.00 0.00 3.55
5946 6970 1.310933 GCCAGCCCATTGAGAGTGTG 61.311 60.000 0.00 0.00 0.00 3.82
5947 6971 1.310933 CCAGCCCATTGAGAGTGTGC 61.311 60.000 0.00 0.00 0.00 4.57
5948 6972 1.001641 AGCCCATTGAGAGTGTGCC 60.002 57.895 0.00 0.00 0.00 5.01
5949 6973 1.303561 GCCCATTGAGAGTGTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
5950 6974 1.310933 GCCCATTGAGAGTGTGCCAG 61.311 60.000 0.00 0.00 0.00 4.85
5951 6975 1.310933 CCCATTGAGAGTGTGCCAGC 61.311 60.000 0.00 0.00 0.00 4.85
5952 6976 1.642037 CCATTGAGAGTGTGCCAGCG 61.642 60.000 0.00 0.00 0.00 5.18
5953 6977 2.037136 ATTGAGAGTGTGCCAGCGC 61.037 57.895 0.00 0.00 0.00 5.92
5954 6978 2.460662 ATTGAGAGTGTGCCAGCGCT 62.461 55.000 2.64 2.64 35.36 5.92
5955 6979 2.813042 GAGAGTGTGCCAGCGCTC 60.813 66.667 7.13 0.00 44.00 5.03
5968 6992 4.141144 CGCTCGGGGTGCATTTAT 57.859 55.556 0.00 0.00 0.00 1.40
5969 6993 1.648720 CGCTCGGGGTGCATTTATG 59.351 57.895 0.00 0.00 0.00 1.90
5970 6994 1.095228 CGCTCGGGGTGCATTTATGT 61.095 55.000 0.00 0.00 0.00 2.29
5971 6995 1.808512 CGCTCGGGGTGCATTTATGTA 60.809 52.381 0.00 0.00 0.00 2.29
5972 6996 2.504367 GCTCGGGGTGCATTTATGTAT 58.496 47.619 0.00 0.00 0.00 2.29
5973 6997 2.484264 GCTCGGGGTGCATTTATGTATC 59.516 50.000 0.00 0.00 0.00 2.24
5974 6998 3.738982 CTCGGGGTGCATTTATGTATCA 58.261 45.455 0.00 0.00 0.00 2.15
5975 6999 4.133820 CTCGGGGTGCATTTATGTATCAA 58.866 43.478 0.00 0.00 0.00 2.57
5976 7000 3.880490 TCGGGGTGCATTTATGTATCAAC 59.120 43.478 0.00 0.00 0.00 3.18
5977 7001 3.004315 CGGGGTGCATTTATGTATCAACC 59.996 47.826 0.00 0.00 33.91 3.77
5978 7002 3.320826 GGGGTGCATTTATGTATCAACCC 59.679 47.826 6.28 6.28 46.16 4.11
5979 7003 3.004315 GGGTGCATTTATGTATCAACCCG 59.996 47.826 0.00 0.00 0.00 5.28
5980 7004 3.880490 GGTGCATTTATGTATCAACCCGA 59.120 43.478 0.00 0.00 0.00 5.14
5981 7005 4.336993 GGTGCATTTATGTATCAACCCGAA 59.663 41.667 0.00 0.00 0.00 4.30
5982 7006 5.163602 GGTGCATTTATGTATCAACCCGAAA 60.164 40.000 0.00 0.00 0.00 3.46
5983 7007 6.460953 GGTGCATTTATGTATCAACCCGAAAT 60.461 38.462 0.00 0.00 0.00 2.17
5984 7008 7.255312 GGTGCATTTATGTATCAACCCGAAATA 60.255 37.037 0.00 0.00 0.00 1.40
5985 7009 8.132362 GTGCATTTATGTATCAACCCGAAATAA 58.868 33.333 0.00 0.00 0.00 1.40
5986 7010 8.132362 TGCATTTATGTATCAACCCGAAATAAC 58.868 33.333 0.00 0.00 0.00 1.89
5987 7011 8.349983 GCATTTATGTATCAACCCGAAATAACT 58.650 33.333 0.00 0.00 0.00 2.24
6000 7024 9.910267 AACCCGAAATAACTAACTAATTATGGT 57.090 29.630 0.00 0.00 0.00 3.55
6001 7025 9.333724 ACCCGAAATAACTAACTAATTATGGTG 57.666 33.333 0.00 0.00 0.00 4.17
6002 7026 9.333724 CCCGAAATAACTAACTAATTATGGTGT 57.666 33.333 0.00 0.00 0.00 4.16
6015 7039 9.691362 ACTAATTATGGTGTACTTTTTGCAAAG 57.309 29.630 12.41 4.16 44.57 2.77
6016 7040 7.961325 AATTATGGTGTACTTTTTGCAAAGG 57.039 32.000 12.41 11.64 43.47 3.11
6017 7041 6.472686 TTATGGTGTACTTTTTGCAAAGGT 57.527 33.333 12.41 16.41 43.47 3.50
6018 7042 4.810191 TGGTGTACTTTTTGCAAAGGTT 57.190 36.364 19.69 8.79 43.47 3.50
6019 7043 5.916661 TGGTGTACTTTTTGCAAAGGTTA 57.083 34.783 19.69 7.97 43.47 2.85
6020 7044 5.652518 TGGTGTACTTTTTGCAAAGGTTAC 58.347 37.500 19.69 16.99 43.47 2.50
6021 7045 5.419471 TGGTGTACTTTTTGCAAAGGTTACT 59.581 36.000 19.69 3.23 43.47 2.24
6022 7046 5.975344 GGTGTACTTTTTGCAAAGGTTACTC 59.025 40.000 19.69 16.53 43.47 2.59
6023 7047 5.975344 GTGTACTTTTTGCAAAGGTTACTCC 59.025 40.000 19.69 10.56 43.47 3.85
6024 7048 4.665833 ACTTTTTGCAAAGGTTACTCCC 57.334 40.909 12.41 0.00 43.47 4.30
6025 7049 4.027437 ACTTTTTGCAAAGGTTACTCCCA 58.973 39.130 12.41 0.00 43.47 4.37
6026 7050 4.142026 ACTTTTTGCAAAGGTTACTCCCAC 60.142 41.667 12.41 0.00 43.47 4.61
6027 7051 1.989706 TTGCAAAGGTTACTCCCACC 58.010 50.000 0.00 0.00 36.75 4.61
6029 7053 1.073284 TGCAAAGGTTACTCCCACCTC 59.927 52.381 0.00 0.00 44.48 3.85
6030 7054 1.351350 GCAAAGGTTACTCCCACCTCT 59.649 52.381 0.00 0.00 44.48 3.69
6031 7055 2.224793 GCAAAGGTTACTCCCACCTCTT 60.225 50.000 0.00 0.00 44.48 2.85
6032 7056 3.676093 CAAAGGTTACTCCCACCTCTTC 58.324 50.000 0.00 0.00 44.48 2.87
6033 7057 2.715763 AGGTTACTCCCACCTCTTCA 57.284 50.000 0.00 0.00 41.08 3.02
6034 7058 2.541466 AGGTTACTCCCACCTCTTCAG 58.459 52.381 0.00 0.00 41.08 3.02
6035 7059 2.111972 AGGTTACTCCCACCTCTTCAGA 59.888 50.000 0.00 0.00 41.08 3.27
6036 7060 3.108376 GGTTACTCCCACCTCTTCAGAT 58.892 50.000 0.00 0.00 0.00 2.90
6037 7061 3.519913 GGTTACTCCCACCTCTTCAGATT 59.480 47.826 0.00 0.00 0.00 2.40
6038 7062 4.508662 GTTACTCCCACCTCTTCAGATTG 58.491 47.826 0.00 0.00 0.00 2.67
6039 7063 1.912043 ACTCCCACCTCTTCAGATTGG 59.088 52.381 0.00 0.00 0.00 3.16
6040 7064 1.211457 CTCCCACCTCTTCAGATTGGG 59.789 57.143 14.12 14.12 43.58 4.12
6041 7065 1.203428 TCCCACCTCTTCAGATTGGGA 60.203 52.381 17.26 17.26 46.21 4.37
6042 7066 1.065126 CCCACCTCTTCAGATTGGGAC 60.065 57.143 14.81 0.00 44.34 4.46
6043 7067 1.630369 CCACCTCTTCAGATTGGGACA 59.370 52.381 0.00 0.00 0.00 4.02
6061 7085 5.532032 TGGGACAAATGATGCACATATAGTG 59.468 40.000 0.00 0.00 44.16 2.74
6085 7109 2.960819 CTTCACGAGAAGGAAATCCGT 58.039 47.619 14.07 0.00 46.01 4.69
6086 7110 2.668457 CTTCACGAGAAGGAAATCCGTG 59.332 50.000 14.07 0.00 46.01 4.94
6087 7111 2.080286 CACGAGAAGGAAATCCGTGT 57.920 50.000 0.00 0.00 43.62 4.49
6088 7112 1.993370 CACGAGAAGGAAATCCGTGTC 59.007 52.381 0.00 3.01 43.62 3.67
6089 7113 1.893801 ACGAGAAGGAAATCCGTGTCT 59.106 47.619 10.02 6.93 42.08 3.41
6090 7114 2.094649 ACGAGAAGGAAATCCGTGTCTC 60.095 50.000 15.33 15.33 42.08 3.36
6091 7115 2.531206 GAGAAGGAAATCCGTGTCTCG 58.469 52.381 12.18 0.00 42.08 4.04
6092 7116 1.000145 GAAGGAAATCCGTGTCTCGC 59.000 55.000 0.00 0.00 42.08 5.03
6093 7117 0.736325 AAGGAAATCCGTGTCTCGCG 60.736 55.000 0.00 0.00 42.08 5.87
6094 7118 2.695646 GAAATCCGTGTCTCGCGC 59.304 61.111 0.00 0.00 35.94 6.86
6101 7125 3.534160 GTGTCTCGCGCGAAAGAA 58.466 55.556 33.99 16.50 0.00 2.52
6102 7126 1.850640 GTGTCTCGCGCGAAAGAAA 59.149 52.632 33.99 20.47 0.00 2.52
6103 7127 0.231279 GTGTCTCGCGCGAAAGAAAA 59.769 50.000 33.99 16.38 0.00 2.29
6104 7128 0.931702 TGTCTCGCGCGAAAGAAAAA 59.068 45.000 33.99 13.98 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 96 1.973515 TCCTCTTCATCATCATCCCCG 59.026 52.381 0.00 0.00 0.00 5.73
105 111 3.797008 CGCTAGTCGTCGTCCTCT 58.203 61.111 0.00 0.00 0.00 3.69
160 166 2.051345 CGCACAGACCAAAACGGC 60.051 61.111 0.00 0.00 39.03 5.68
172 178 0.242555 TACACGCTCATTCTCGCACA 59.757 50.000 0.00 0.00 0.00 4.57
222 228 4.016444 TCTACCTGCATTTCCAATTCACC 58.984 43.478 0.00 0.00 0.00 4.02
249 255 7.615365 AGAAAATGCATCAGGACAGGTAATTAA 59.385 33.333 0.00 0.00 0.00 1.40
251 257 5.954150 AGAAAATGCATCAGGACAGGTAATT 59.046 36.000 0.00 0.00 0.00 1.40
313 321 5.116882 GGGTATCTGTTGACCTGATAACAC 58.883 45.833 0.00 0.00 41.21 3.32
372 380 2.636830 ACCATGCTCATTACTGACTGC 58.363 47.619 0.00 0.00 0.00 4.40
377 385 4.264253 TCAAGGAACCATGCTCATTACTG 58.736 43.478 0.00 0.00 0.00 2.74
451 558 7.048512 AGACAAATAATTTAGAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
457 564 9.855021 AAATCCAAGACAAATAATTTAGAACGG 57.145 29.630 0.00 0.00 0.00 4.44
468 575 9.529325 CGTATCTAGACAAATCCAAGACAAATA 57.471 33.333 0.00 0.00 0.00 1.40
470 577 6.816640 CCGTATCTAGACAAATCCAAGACAAA 59.183 38.462 0.00 0.00 0.00 2.83
471 578 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
475 582 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
476 583 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
477 584 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
497 604 8.326680 TGTCTAAATACGGATGTATCGATACA 57.673 34.615 33.83 33.83 46.21 2.29
498 605 9.616634 TTTGTCTAAATACGGATGTATCGATAC 57.383 33.333 25.48 25.48 40.42 2.24
500 607 9.355215 GATTTGTCTAAATACGGATGTATCGAT 57.645 33.333 2.16 2.16 40.42 3.59
501 608 8.573885 AGATTTGTCTAAATACGGATGTATCGA 58.426 33.333 0.00 0.00 40.42 3.59
502 609 8.744008 AGATTTGTCTAAATACGGATGTATCG 57.256 34.615 0.00 0.00 40.42 2.92
506 613 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
507 614 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
509 616 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
510 617 9.367444 ACTTGTCTTAGATTTGTCTAAATACGG 57.633 33.333 0.26 2.64 36.66 4.02
516 623 9.622004 CGAGTTACTTGTCTTAGATTTGTCTAA 57.378 33.333 0.00 0.00 0.00 2.10
517 624 8.242053 CCGAGTTACTTGTCTTAGATTTGTCTA 58.758 37.037 0.00 0.00 0.00 2.59
518 625 7.039923 TCCGAGTTACTTGTCTTAGATTTGTCT 60.040 37.037 0.00 0.00 0.00 3.41
519 626 7.088905 TCCGAGTTACTTGTCTTAGATTTGTC 58.911 38.462 0.00 0.00 0.00 3.18
520 627 6.989659 TCCGAGTTACTTGTCTTAGATTTGT 58.010 36.000 0.00 0.00 0.00 2.83
521 628 7.410513 CGTTCCGAGTTACTTGTCTTAGATTTG 60.411 40.741 0.00 0.00 0.00 2.32
522 629 6.585322 CGTTCCGAGTTACTTGTCTTAGATTT 59.415 38.462 0.00 0.00 0.00 2.17
523 630 6.072286 TCGTTCCGAGTTACTTGTCTTAGATT 60.072 38.462 0.00 0.00 0.00 2.40
524 631 5.413833 TCGTTCCGAGTTACTTGTCTTAGAT 59.586 40.000 0.00 0.00 0.00 1.98
525 632 4.756642 TCGTTCCGAGTTACTTGTCTTAGA 59.243 41.667 0.00 0.00 0.00 2.10
526 633 5.039480 TCGTTCCGAGTTACTTGTCTTAG 57.961 43.478 0.00 0.00 0.00 2.18
527 634 5.437289 TTCGTTCCGAGTTACTTGTCTTA 57.563 39.130 0.00 0.00 37.14 2.10
528 635 3.996150 TCGTTCCGAGTTACTTGTCTT 57.004 42.857 0.00 0.00 0.00 3.01
529 636 3.305199 CCTTCGTTCCGAGTTACTTGTCT 60.305 47.826 0.00 0.00 37.14 3.41
530 637 2.985139 CCTTCGTTCCGAGTTACTTGTC 59.015 50.000 0.00 0.00 37.14 3.18
531 638 2.288640 CCCTTCGTTCCGAGTTACTTGT 60.289 50.000 0.00 0.00 37.14 3.16
532 639 2.029649 TCCCTTCGTTCCGAGTTACTTG 60.030 50.000 0.00 0.00 37.14 3.16
533 640 2.230750 CTCCCTTCGTTCCGAGTTACTT 59.769 50.000 0.00 0.00 37.14 2.24
534 641 1.817447 CTCCCTTCGTTCCGAGTTACT 59.183 52.381 0.00 0.00 37.14 2.24
535 642 1.543358 ACTCCCTTCGTTCCGAGTTAC 59.457 52.381 0.00 0.00 37.14 2.50
536 643 1.915141 ACTCCCTTCGTTCCGAGTTA 58.085 50.000 0.00 0.00 37.14 2.24
537 644 1.543358 GTACTCCCTTCGTTCCGAGTT 59.457 52.381 0.00 0.00 37.14 3.01
538 645 1.172175 GTACTCCCTTCGTTCCGAGT 58.828 55.000 0.00 0.00 37.14 4.18
539 646 0.455005 GGTACTCCCTTCGTTCCGAG 59.545 60.000 0.00 0.00 37.14 4.63
540 647 0.038744 AGGTACTCCCTTCGTTCCGA 59.961 55.000 0.00 0.00 42.73 4.55
541 648 2.576298 AGGTACTCCCTTCGTTCCG 58.424 57.895 0.00 0.00 42.73 4.30
549 656 5.072600 TGATTGTACACAAAAGGTACTCCCT 59.927 40.000 0.00 0.00 40.88 4.20
550 657 5.310451 TGATTGTACACAAAAGGTACTCCC 58.690 41.667 0.00 0.00 41.27 4.30
551 658 6.870971 TTGATTGTACACAAAAGGTACTCC 57.129 37.500 0.00 0.00 41.27 3.85
552 659 9.821662 GTATTTGATTGTACACAAAAGGTACTC 57.178 33.333 13.67 0.00 41.27 2.59
553 660 9.569122 AGTATTTGATTGTACACAAAAGGTACT 57.431 29.630 13.67 13.30 41.27 2.73
554 661 9.821662 GAGTATTTGATTGTACACAAAAGGTAC 57.178 33.333 13.67 11.80 39.55 3.34
555 662 9.005777 GGAGTATTTGATTGTACACAAAAGGTA 57.994 33.333 13.67 2.55 39.55 3.08
556 663 7.039993 GGGAGTATTTGATTGTACACAAAAGGT 60.040 37.037 13.67 3.32 39.55 3.50
557 664 7.176690 AGGGAGTATTTGATTGTACACAAAAGG 59.823 37.037 13.67 0.00 39.55 3.11
558 665 8.110860 AGGGAGTATTTGATTGTACACAAAAG 57.889 34.615 13.67 0.00 39.55 2.27
559 666 7.175990 GGAGGGAGTATTTGATTGTACACAAAA 59.824 37.037 13.67 7.30 39.55 2.44
560 667 6.657541 GGAGGGAGTATTTGATTGTACACAAA 59.342 38.462 12.46 12.46 39.55 2.83
561 668 6.177610 GGAGGGAGTATTTGATTGTACACAA 58.822 40.000 0.00 0.00 40.51 3.33
562 669 5.625886 CGGAGGGAGTATTTGATTGTACACA 60.626 44.000 0.00 0.00 0.00 3.72
563 670 4.809426 CGGAGGGAGTATTTGATTGTACAC 59.191 45.833 0.00 0.00 0.00 2.90
564 671 4.468510 ACGGAGGGAGTATTTGATTGTACA 59.531 41.667 0.00 0.00 0.00 2.90
565 672 5.019785 ACGGAGGGAGTATTTGATTGTAC 57.980 43.478 0.00 0.00 0.00 2.90
566 673 5.395990 GGAACGGAGGGAGTATTTGATTGTA 60.396 44.000 0.00 0.00 0.00 2.41
567 674 4.514401 GAACGGAGGGAGTATTTGATTGT 58.486 43.478 0.00 0.00 0.00 2.71
568 675 3.877508 GGAACGGAGGGAGTATTTGATTG 59.122 47.826 0.00 0.00 0.00 2.67
569 676 3.521937 TGGAACGGAGGGAGTATTTGATT 59.478 43.478 0.00 0.00 0.00 2.57
570 677 3.112263 TGGAACGGAGGGAGTATTTGAT 58.888 45.455 0.00 0.00 0.00 2.57
571 678 2.542550 TGGAACGGAGGGAGTATTTGA 58.457 47.619 0.00 0.00 0.00 2.69
572 679 3.343941 TTGGAACGGAGGGAGTATTTG 57.656 47.619 0.00 0.00 0.00 2.32
573 680 4.376225 TTTTGGAACGGAGGGAGTATTT 57.624 40.909 0.00 0.00 0.00 1.40
574 681 4.586306 ATTTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
575 682 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
576 683 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
581 688 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
585 692 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
611 718 9.931210 CCGTTCCAAAATAGATGACTTTAATAC 57.069 33.333 0.00 0.00 0.00 1.89
612 719 9.893634 TCCGTTCCAAAATAGATGACTTTAATA 57.106 29.630 0.00 0.00 0.00 0.98
613 720 8.801882 TCCGTTCCAAAATAGATGACTTTAAT 57.198 30.769 0.00 0.00 0.00 1.40
619 726 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
621 728 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
623 730 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
624 731 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
626 733 5.703730 TTATACTCCCTCCGTTCCAAAAT 57.296 39.130 0.00 0.00 0.00 1.82
627 734 5.703730 ATTATACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
630 752 8.120538 AGATTATATTATACTCCCTCCGTTCCA 58.879 37.037 0.00 0.00 0.00 3.53
653 810 1.797713 CGCCGTCGTGTGTGAATAGAT 60.798 52.381 0.00 0.00 0.00 1.98
668 825 4.760047 CAGCTGTAAGGCCGCCGT 62.760 66.667 5.25 2.81 0.00 5.68
673 830 1.066152 GCTTTATGCAGCTGTAAGGCC 59.934 52.381 16.64 0.00 42.31 5.19
679 836 1.004044 ACAGAGGCTTTATGCAGCTGT 59.996 47.619 16.64 9.85 45.80 4.40
682 839 2.872370 CAAACAGAGGCTTTATGCAGC 58.128 47.619 0.00 0.00 45.15 5.25
683 840 2.416431 GGCAAACAGAGGCTTTATGCAG 60.416 50.000 10.39 0.00 45.15 4.41
684 841 1.545582 GGCAAACAGAGGCTTTATGCA 59.454 47.619 10.39 0.00 45.15 3.96
685 842 1.468054 CGGCAAACAGAGGCTTTATGC 60.468 52.381 0.00 0.00 41.94 3.14
686 843 1.812571 ACGGCAAACAGAGGCTTTATG 59.187 47.619 0.00 0.00 0.00 1.90
687 844 2.200373 ACGGCAAACAGAGGCTTTAT 57.800 45.000 0.00 0.00 0.00 1.40
689 846 1.111277 AAACGGCAAACAGAGGCTTT 58.889 45.000 0.00 0.00 0.00 3.51
721 932 2.159268 TGAACTGTTTCGTGTCGTACCA 60.159 45.455 0.00 0.00 34.04 3.25
723 934 3.111098 ACTGAACTGTTTCGTGTCGTAC 58.889 45.455 0.00 0.00 34.04 3.67
724 935 3.425577 ACTGAACTGTTTCGTGTCGTA 57.574 42.857 0.00 0.00 34.04 3.43
799 1010 4.246458 AGGTAAAGATGAGAACAACGCTC 58.754 43.478 0.00 0.00 0.00 5.03
801 1012 4.246458 AGAGGTAAAGATGAGAACAACGC 58.754 43.478 0.00 0.00 0.00 4.84
804 1015 7.546250 AGAAGAGAGGTAAAGATGAGAACAA 57.454 36.000 0.00 0.00 0.00 2.83
805 1016 7.310113 GGAAGAAGAGAGGTAAAGATGAGAACA 60.310 40.741 0.00 0.00 0.00 3.18
806 1017 7.039270 GGAAGAAGAGAGGTAAAGATGAGAAC 58.961 42.308 0.00 0.00 0.00 3.01
807 1018 6.957020 AGGAAGAAGAGAGGTAAAGATGAGAA 59.043 38.462 0.00 0.00 0.00 2.87
817 1028 6.289064 GTTCACAAAAGGAAGAAGAGAGGTA 58.711 40.000 0.00 0.00 0.00 3.08
823 1034 4.570772 CAGACGTTCACAAAAGGAAGAAGA 59.429 41.667 0.00 0.00 0.00 2.87
824 1035 4.570772 TCAGACGTTCACAAAAGGAAGAAG 59.429 41.667 0.00 0.00 0.00 2.85
825 1036 4.509616 TCAGACGTTCACAAAAGGAAGAA 58.490 39.130 0.00 0.00 0.00 2.52
964 1210 3.007940 AGACCACAGCAGCACACTATAAA 59.992 43.478 0.00 0.00 0.00 1.40
965 1211 2.567169 AGACCACAGCAGCACACTATAA 59.433 45.455 0.00 0.00 0.00 0.98
966 1212 2.094026 CAGACCACAGCAGCACACTATA 60.094 50.000 0.00 0.00 0.00 1.31
970 1216 1.524621 ACAGACCACAGCAGCACAC 60.525 57.895 0.00 0.00 0.00 3.82
985 1231 3.030291 ACTTCATCCCTAGAGCTCACAG 58.970 50.000 17.77 12.22 0.00 3.66
1035 1281 3.823330 GCCAGCAGATGCACCAGC 61.823 66.667 7.68 0.00 45.16 4.85
1239 1485 0.833409 TGCTCAAGCTCTGGACCTCA 60.833 55.000 3.32 0.00 42.66 3.86
1310 1556 5.937540 TCTCTATCTATCAGCAGCTACAGTC 59.062 44.000 0.00 0.00 0.00 3.51
1368 1662 3.525537 CAGCCGATTAATCTGACAGTGT 58.474 45.455 13.45 0.00 0.00 3.55
1511 1810 1.856629 AGGGCAAATCATGGTCAAGG 58.143 50.000 0.00 0.00 0.00 3.61
1518 1817 2.296752 TGTCACACAAGGGCAAATCATG 59.703 45.455 0.00 0.00 0.00 3.07
1531 1833 4.988540 CGGAGAAGAATAAACTGTCACACA 59.011 41.667 0.00 0.00 0.00 3.72
1534 1836 4.246458 AGCGGAGAAGAATAAACTGTCAC 58.754 43.478 0.00 0.00 0.00 3.67
1572 1874 3.876320 CTGCTCTCTTAATGAAGCCCTTC 59.124 47.826 1.12 1.12 39.91 3.46
1602 1904 0.994247 AGCCAGTGTCCAATCCATCA 59.006 50.000 0.00 0.00 0.00 3.07
1827 2129 0.805711 TCGCATAGTCGGACGTCGTA 60.806 55.000 9.92 0.00 40.32 3.43
1834 2136 1.721664 CCGGTCTTCGCATAGTCGGA 61.722 60.000 0.00 0.00 36.18 4.55
1923 2226 6.398918 AGCATTCGTACTTACATTTGAGAGT 58.601 36.000 0.00 0.00 0.00 3.24
1936 2239 3.740115 ACAAACAAGGAGCATTCGTACT 58.260 40.909 0.00 0.00 0.00 2.73
1941 2245 5.967674 CGATATGAACAAACAAGGAGCATTC 59.032 40.000 0.00 0.00 0.00 2.67
2111 2419 3.196901 ACGGCATTAACTGTCATGGTCTA 59.803 43.478 0.00 0.00 0.00 2.59
2186 2494 5.121142 GCACTATTTAAAAGTCACGGCACTA 59.879 40.000 0.00 0.00 0.00 2.74
2192 2500 5.689819 AGCAAGCACTATTTAAAAGTCACG 58.310 37.500 0.00 0.00 0.00 4.35
2193 2501 6.903419 AGAGCAAGCACTATTTAAAAGTCAC 58.097 36.000 0.00 0.00 0.00 3.67
2194 2502 8.504005 GTTAGAGCAAGCACTATTTAAAAGTCA 58.496 33.333 0.20 0.00 0.00 3.41
2195 2503 8.504005 TGTTAGAGCAAGCACTATTTAAAAGTC 58.496 33.333 0.20 0.00 0.00 3.01
2196 2504 8.391075 TGTTAGAGCAAGCACTATTTAAAAGT 57.609 30.769 0.20 0.00 0.00 2.66
2197 2505 9.282247 CATGTTAGAGCAAGCACTATTTAAAAG 57.718 33.333 0.20 0.00 0.00 2.27
2198 2506 8.243426 CCATGTTAGAGCAAGCACTATTTAAAA 58.757 33.333 0.20 0.00 0.00 1.52
2199 2507 7.628366 GCCATGTTAGAGCAAGCACTATTTAAA 60.628 37.037 0.20 0.00 0.00 1.52
2466 2816 5.883503 TTTGTTACAGAAACGGTGAAAGT 57.116 34.783 0.00 0.00 41.30 2.66
2471 2821 4.287238 AGCTTTTGTTACAGAAACGGTG 57.713 40.909 0.00 0.00 41.30 4.94
2472 2822 6.707161 TGTATAGCTTTTGTTACAGAAACGGT 59.293 34.615 0.00 0.00 41.30 4.83
2524 2884 9.130661 TCTGAAAGACATTAAATTCCTGTTTCA 57.869 29.630 0.00 0.00 38.67 2.69
2572 2932 9.965824 AACAATTCTGAACATAAAACCTACAAG 57.034 29.630 0.00 0.00 0.00 3.16
2631 3096 7.145985 CAGTATAATTTACAGAAGCGCTAGGA 58.854 38.462 12.05 0.00 0.00 2.94
2738 3210 1.270678 ACAAACGGTGTAGCCTCCTTC 60.271 52.381 0.00 0.00 39.29 3.46
2844 3317 8.192774 TGTTAGTTCCGTTATACATGGTAAGAG 58.807 37.037 0.00 0.00 32.49 2.85
2859 3364 7.980099 CAGACCTTATAAAGATGTTAGTTCCGT 59.020 37.037 0.00 0.00 0.00 4.69
2860 3365 8.195436 TCAGACCTTATAAAGATGTTAGTTCCG 58.805 37.037 0.00 0.00 0.00 4.30
2941 3446 5.777223 TCAGAACTCTGCCATGCTATATACT 59.223 40.000 1.61 0.00 43.46 2.12
2957 3466 4.935885 AATCGTGCTTCATTCAGAACTC 57.064 40.909 0.00 0.00 31.61 3.01
2979 3488 4.251268 GGCTTAATCAGAAGGTACGTGTT 58.749 43.478 0.00 0.00 0.00 3.32
3049 3558 1.556911 CATCCAACTGTCCTAGCAGGT 59.443 52.381 2.91 0.00 40.59 4.00
3133 3642 7.065803 GCAAATAGACCAAGCTTATGAACACTA 59.934 37.037 0.00 0.00 0.00 2.74
3196 3705 0.674895 AATCTCCGAGGTGCTTGCAC 60.675 55.000 16.50 16.50 0.00 4.57
3380 3889 2.472695 TCATACTGGTGAAGTGGCAC 57.527 50.000 10.29 10.29 40.26 5.01
3492 4003 6.919662 AGAAATCAACATATGCTAAAATGGCG 59.080 34.615 1.58 0.00 0.00 5.69
3567 4078 5.516090 ACAATAAAACGCACATTCTTTCGT 58.484 33.333 0.00 0.00 36.67 3.85
3569 4080 7.160633 ACAACAATAAAACGCACATTCTTTC 57.839 32.000 0.00 0.00 0.00 2.62
3747 4650 9.807921 TTTCCTCCTAACAAATTTCTCTTGTAT 57.192 29.630 0.00 0.00 35.98 2.29
3759 4764 7.200434 AGCTCATCTATTTCCTCCTAACAAA 57.800 36.000 0.00 0.00 0.00 2.83
3806 4811 3.054878 GCAAAGAGTTCAATTGCCAGTG 58.945 45.455 0.00 0.00 42.70 3.66
4011 5016 4.081309 GCCACCATGTAAGGTACTGTAGAA 60.081 45.833 0.00 0.00 40.77 2.10
4017 5022 2.026262 CCTTGCCACCATGTAAGGTACT 60.026 50.000 0.00 0.00 40.77 2.73
4049 5054 8.164733 TGTTTACCCCATTTTCTATTGTCACTA 58.835 33.333 0.00 0.00 0.00 2.74
4069 5080 5.438761 ACTTTGCTCCATCTTGTGTTTAC 57.561 39.130 0.00 0.00 0.00 2.01
4071 5082 4.520492 CCTACTTTGCTCCATCTTGTGTTT 59.480 41.667 0.00 0.00 0.00 2.83
4074 5085 2.421424 GCCTACTTTGCTCCATCTTGTG 59.579 50.000 0.00 0.00 0.00 3.33
4112 5123 7.358105 CGCTGCAAATGACAAATCATCAATATC 60.358 37.037 0.00 0.00 45.26 1.63
4342 5359 4.339748 AGTGCTGACTGTATGAGAAGAGA 58.660 43.478 0.00 0.00 0.00 3.10
4346 5363 4.463891 TCATGAGTGCTGACTGTATGAGAA 59.536 41.667 0.00 0.00 31.87 2.87
4347 5364 4.019174 TCATGAGTGCTGACTGTATGAGA 58.981 43.478 0.00 0.00 31.87 3.27
4354 5371 2.795470 CGATGATCATGAGTGCTGACTG 59.205 50.000 14.30 0.00 30.16 3.51
4359 5376 2.898612 AGGATCGATGATCATGAGTGCT 59.101 45.455 14.30 6.00 40.50 4.40
4361 5378 4.021280 AGGAAGGATCGATGATCATGAGTG 60.021 45.833 14.30 0.18 40.50 3.51
4383 5400 3.757493 AGTACCTACACAGAAGGTCGAAG 59.243 47.826 0.00 0.00 44.20 3.79
4384 5401 3.755378 GAGTACCTACACAGAAGGTCGAA 59.245 47.826 0.00 0.00 44.20 3.71
4385 5402 3.341823 GAGTACCTACACAGAAGGTCGA 58.658 50.000 0.00 0.00 44.20 4.20
4386 5403 2.095532 CGAGTACCTACACAGAAGGTCG 59.904 54.545 0.00 0.00 44.20 4.79
4389 5406 2.095532 CGTCGAGTACCTACACAGAAGG 59.904 54.545 0.00 0.00 40.20 3.46
4397 5414 1.855360 CGTAGTCCGTCGAGTACCTAC 59.145 57.143 0.00 0.00 40.49 3.18
4725 5742 2.583520 GACAGAGGCAGAGGCAGG 59.416 66.667 0.00 0.00 43.71 4.85
4727 5744 1.614525 ATGGACAGAGGCAGAGGCA 60.615 57.895 0.00 0.00 43.71 4.75
4728 5745 1.153208 CATGGACAGAGGCAGAGGC 60.153 63.158 0.00 0.00 40.13 4.70
4735 5752 1.077930 CCACAGCCATGGACAGAGG 60.078 63.158 18.40 8.23 43.02 3.69
4736 5753 1.748122 GCCACAGCCATGGACAGAG 60.748 63.158 18.40 1.07 43.02 3.35
4737 5754 2.352422 GCCACAGCCATGGACAGA 59.648 61.111 18.40 0.00 43.02 3.41
4748 5765 3.883744 GAGGACACCACGGCCACAG 62.884 68.421 2.24 0.00 0.00 3.66
4782 5799 1.425066 TGCATTCTCACAAAGACCCCT 59.575 47.619 0.00 0.00 32.27 4.79
4786 5803 3.248602 ACGTTCTGCATTCTCACAAAGAC 59.751 43.478 0.00 0.00 32.27 3.01
4787 5804 3.248363 CACGTTCTGCATTCTCACAAAGA 59.752 43.478 0.00 0.00 0.00 2.52
4788 5805 3.002656 ACACGTTCTGCATTCTCACAAAG 59.997 43.478 0.00 0.00 0.00 2.77
4793 5810 0.867746 GCACACGTTCTGCATTCTCA 59.132 50.000 9.63 0.00 34.56 3.27
4818 5835 2.681064 TACCGGTCCGACCCCTTG 60.681 66.667 12.40 0.00 33.75 3.61
4983 6000 1.404717 CGCTTGTACTCCATGAGCAGT 60.405 52.381 0.00 0.00 32.04 4.40
5137 6156 3.559655 TCGATCCAACAACAACAACAGAG 59.440 43.478 0.00 0.00 0.00 3.35
5145 6164 2.423185 GCATCCATCGATCCAACAACAA 59.577 45.455 0.00 0.00 0.00 2.83
5209 6228 5.814705 GGGTTTCTCAGTCATCTATGAACTG 59.185 44.000 12.49 12.49 38.75 3.16
5210 6229 5.485353 TGGGTTTCTCAGTCATCTATGAACT 59.515 40.000 0.00 0.00 38.75 3.01
5217 6236 2.306805 TGCATGGGTTTCTCAGTCATCT 59.693 45.455 0.00 0.00 0.00 2.90
5222 6241 1.004044 CCTCTGCATGGGTTTCTCAGT 59.996 52.381 0.00 0.00 0.00 3.41
5224 6243 0.322816 GCCTCTGCATGGGTTTCTCA 60.323 55.000 7.82 0.00 37.47 3.27
5248 6267 7.510630 ACACTTCAAGAAAATATCGAAACTCG 58.489 34.615 0.00 0.00 42.10 4.18
5251 6270 8.902735 GGAAACACTTCAAGAAAATATCGAAAC 58.097 33.333 0.00 0.00 32.75 2.78
5384 6407 7.541783 ACGAACATTGTTTTGTATGATGGAATG 59.458 33.333 3.08 0.00 0.00 2.67
5386 6409 6.860539 CACGAACATTGTTTTGTATGATGGAA 59.139 34.615 3.08 0.00 0.00 3.53
5419 6442 6.480651 ACGTGTTTTGAAACTTGGAACTTTTT 59.519 30.769 7.97 0.00 39.59 1.94
5426 6449 4.768130 TGAACGTGTTTTGAAACTTGGA 57.232 36.364 7.97 0.00 39.59 3.53
5461 6484 7.094549 TGGGAACATTTTTATAGTTCAGGAACG 60.095 37.037 6.52 0.00 42.50 3.95
5462 6485 8.117813 TGGGAACATTTTTATAGTTCAGGAAC 57.882 34.615 4.00 4.00 42.50 3.62
5489 6512 8.592105 TTTTTGAAAATTCACCAATGCTCTAG 57.408 30.769 0.00 0.00 36.83 2.43
5501 6524 8.499403 AATTCGGAAACCTTTTTGAAAATTCA 57.501 26.923 0.00 0.00 34.92 2.57
5509 6532 9.432077 CATGTTTTAAATTCGGAAACCTTTTTG 57.568 29.630 0.00 0.00 33.49 2.44
5515 6538 7.222999 TGTGAACATGTTTTAAATTCGGAAACC 59.777 33.333 13.36 0.00 33.49 3.27
5519 6542 8.879342 ATTTGTGAACATGTTTTAAATTCGGA 57.121 26.923 13.36 0.00 0.00 4.55
5555 6578 7.862372 CCGTGAAACATTTATGAAATATGGGAG 59.138 37.037 0.00 0.00 35.74 4.30
5557 6580 7.711846 TCCGTGAAACATTTATGAAATATGGG 58.288 34.615 0.00 0.00 35.74 4.00
5581 6604 7.543756 TGGAATCCGAGGAAAATTAACAAATC 58.456 34.615 0.00 0.00 0.00 2.17
5669 6692 7.770897 ACTTTCCATGGAGAATTATACTGTGTC 59.229 37.037 15.53 0.00 0.00 3.67
5683 6707 4.826274 TGGTCTAGAACTTTCCATGGAG 57.174 45.455 15.53 7.02 0.00 3.86
5693 6717 2.496470 GGTGTTCGGATGGTCTAGAACT 59.504 50.000 9.68 0.00 42.29 3.01
5715 6739 5.470368 GCTTTTCTTATGTCTTTTCCCACC 58.530 41.667 0.00 0.00 0.00 4.61
5729 6753 1.822371 GCCCATTTCCGGCTTTTCTTA 59.178 47.619 0.00 0.00 43.48 2.10
5795 6819 9.910267 ACCATAATTAGTTAGTTATTTCGGGTT 57.090 29.630 0.00 0.00 0.00 4.11
5829 6853 1.497286 AGGTGGGAGTAACCTTTGCAA 59.503 47.619 0.00 0.00 46.14 4.08
5836 6860 2.537143 TCTGAAGAGGTGGGAGTAACC 58.463 52.381 0.00 0.00 38.03 2.85
5839 6863 3.107601 CCAATCTGAAGAGGTGGGAGTA 58.892 50.000 5.33 0.00 32.44 2.59
5844 6868 1.630369 TGTCCCAATCTGAAGAGGTGG 59.370 52.381 6.03 6.03 34.59 4.61
5846 6870 4.043310 TCATTTGTCCCAATCTGAAGAGGT 59.957 41.667 0.00 0.00 0.00 3.85
5851 6875 4.082081 GTGCATCATTTGTCCCAATCTGAA 60.082 41.667 0.00 0.00 0.00 3.02
5857 6881 6.039605 CACTATATGTGCATCATTTGTCCCAA 59.960 38.462 7.02 0.00 40.06 4.12
5873 6897 1.407618 TCGTGAAGGCGCACTATATGT 59.592 47.619 10.83 0.00 36.65 2.29
5874 6898 2.054363 CTCGTGAAGGCGCACTATATG 58.946 52.381 10.83 2.88 36.65 1.78
5875 6899 1.954382 TCTCGTGAAGGCGCACTATAT 59.046 47.619 10.83 0.00 36.65 0.86
5876 6900 1.385528 TCTCGTGAAGGCGCACTATA 58.614 50.000 10.83 0.00 36.65 1.31
5877 6901 0.530744 TTCTCGTGAAGGCGCACTAT 59.469 50.000 10.83 0.00 36.65 2.12
5878 6902 0.109272 CTTCTCGTGAAGGCGCACTA 60.109 55.000 17.47 0.00 44.33 2.74
5879 6903 1.373497 CTTCTCGTGAAGGCGCACT 60.373 57.895 17.47 0.02 44.33 4.40
5880 6904 3.159984 CTTCTCGTGAAGGCGCAC 58.840 61.111 17.47 0.00 44.33 5.34
5886 6910 3.728845 TGTCTTTTCCCTTCTCGTGAAG 58.271 45.455 18.13 18.13 46.82 3.02
5887 6911 3.830744 TGTCTTTTCCCTTCTCGTGAA 57.169 42.857 0.00 0.00 0.00 3.18
5888 6912 5.245301 TCTTATGTCTTTTCCCTTCTCGTGA 59.755 40.000 0.00 0.00 0.00 4.35
5889 6913 5.479306 TCTTATGTCTTTTCCCTTCTCGTG 58.521 41.667 0.00 0.00 0.00 4.35
5890 6914 5.740290 TCTTATGTCTTTTCCCTTCTCGT 57.260 39.130 0.00 0.00 0.00 4.18
5891 6915 7.435068 TTTTCTTATGTCTTTTCCCTTCTCG 57.565 36.000 0.00 0.00 0.00 4.04
5892 6916 7.309177 GCTTTTCTTATGTCTTTTCCCTTCTC 58.691 38.462 0.00 0.00 0.00 2.87
5893 6917 6.209589 GGCTTTTCTTATGTCTTTTCCCTTCT 59.790 38.462 0.00 0.00 0.00 2.85
5894 6918 6.015434 TGGCTTTTCTTATGTCTTTTCCCTTC 60.015 38.462 0.00 0.00 0.00 3.46
5895 6919 5.838521 TGGCTTTTCTTATGTCTTTTCCCTT 59.161 36.000 0.00 0.00 0.00 3.95
5896 6920 5.393866 TGGCTTTTCTTATGTCTTTTCCCT 58.606 37.500 0.00 0.00 0.00 4.20
5897 6921 5.476945 TCTGGCTTTTCTTATGTCTTTTCCC 59.523 40.000 0.00 0.00 0.00 3.97
5898 6922 6.575162 TCTGGCTTTTCTTATGTCTTTTCC 57.425 37.500 0.00 0.00 0.00 3.13
5899 6923 8.919661 CATTTCTGGCTTTTCTTATGTCTTTTC 58.080 33.333 0.00 0.00 0.00 2.29
5900 6924 7.874528 CCATTTCTGGCTTTTCTTATGTCTTTT 59.125 33.333 0.00 0.00 35.23 2.27
5901 6925 7.381323 CCATTTCTGGCTTTTCTTATGTCTTT 58.619 34.615 0.00 0.00 35.23 2.52
5902 6926 6.071165 CCCATTTCTGGCTTTTCTTATGTCTT 60.071 38.462 0.00 0.00 41.64 3.01
5903 6927 5.420104 CCCATTTCTGGCTTTTCTTATGTCT 59.580 40.000 0.00 0.00 41.64 3.41
5904 6928 5.654497 CCCATTTCTGGCTTTTCTTATGTC 58.346 41.667 0.00 0.00 41.64 3.06
5905 6929 4.081476 GCCCATTTCTGGCTTTTCTTATGT 60.081 41.667 0.00 0.00 45.70 2.29
5906 6930 4.436332 GCCCATTTCTGGCTTTTCTTATG 58.564 43.478 0.00 0.00 45.70 1.90
5907 6931 4.743057 GCCCATTTCTGGCTTTTCTTAT 57.257 40.909 0.00 0.00 45.70 1.73
5926 6950 1.751927 CACTCTCAATGGGCTGGCC 60.752 63.158 14.23 14.23 0.00 5.36
5927 6951 1.001641 ACACTCTCAATGGGCTGGC 60.002 57.895 0.00 0.00 0.00 4.85
5928 6952 1.310933 GCACACTCTCAATGGGCTGG 61.311 60.000 0.00 0.00 43.47 4.85
5929 6953 1.310933 GGCACACTCTCAATGGGCTG 61.311 60.000 0.00 0.00 46.19 4.85
5930 6954 1.001641 GGCACACTCTCAATGGGCT 60.002 57.895 0.00 0.00 46.19 5.19
5931 6955 1.303561 TGGCACACTCTCAATGGGC 60.304 57.895 0.00 0.00 46.23 5.36
5932 6956 1.310933 GCTGGCACACTCTCAATGGG 61.311 60.000 0.00 0.00 0.00 4.00
5933 6957 1.642037 CGCTGGCACACTCTCAATGG 61.642 60.000 0.00 0.00 0.00 3.16
5934 6958 1.792301 CGCTGGCACACTCTCAATG 59.208 57.895 0.00 0.00 0.00 2.82
5935 6959 2.037136 GCGCTGGCACACTCTCAAT 61.037 57.895 0.00 0.00 39.62 2.57
5936 6960 2.666190 GCGCTGGCACACTCTCAA 60.666 61.111 0.00 0.00 39.62 3.02
5937 6961 3.580100 GAGCGCTGGCACACTCTCA 62.580 63.158 18.48 0.00 43.41 3.27
5938 6962 2.813042 GAGCGCTGGCACACTCTC 60.813 66.667 18.48 0.00 43.41 3.20
5939 6963 4.731612 CGAGCGCTGGCACACTCT 62.732 66.667 18.48 0.00 43.41 3.24
5949 6973 2.608970 ATAAATGCACCCCGAGCGCT 62.609 55.000 11.27 11.27 33.85 5.92
5950 6974 2.186826 ATAAATGCACCCCGAGCGC 61.187 57.895 0.00 0.00 33.85 5.92
5951 6975 1.095228 ACATAAATGCACCCCGAGCG 61.095 55.000 0.00 0.00 33.85 5.03
5952 6976 1.961793 TACATAAATGCACCCCGAGC 58.038 50.000 0.00 0.00 0.00 5.03
5953 6977 3.738982 TGATACATAAATGCACCCCGAG 58.261 45.455 0.00 0.00 0.00 4.63
5954 6978 3.847671 TGATACATAAATGCACCCCGA 57.152 42.857 0.00 0.00 0.00 5.14
5955 6979 3.004315 GGTTGATACATAAATGCACCCCG 59.996 47.826 0.00 0.00 0.00 5.73
5956 6980 3.320826 GGGTTGATACATAAATGCACCCC 59.679 47.826 0.00 0.00 0.00 4.95
5957 6981 3.004315 CGGGTTGATACATAAATGCACCC 59.996 47.826 0.00 0.00 0.00 4.61
5958 6982 3.880490 TCGGGTTGATACATAAATGCACC 59.120 43.478 0.00 0.00 0.00 5.01
5959 6983 5.493133 TTCGGGTTGATACATAAATGCAC 57.507 39.130 0.00 0.00 0.00 4.57
5960 6984 6.707440 ATTTCGGGTTGATACATAAATGCA 57.293 33.333 0.00 0.00 0.00 3.96
5961 6985 8.349983 AGTTATTTCGGGTTGATACATAAATGC 58.650 33.333 0.00 0.00 0.00 3.56
5974 6998 9.910267 ACCATAATTAGTTAGTTATTTCGGGTT 57.090 29.630 0.00 0.00 0.00 4.11
5975 6999 9.333724 CACCATAATTAGTTAGTTATTTCGGGT 57.666 33.333 0.00 0.00 0.00 5.28
5976 7000 9.333724 ACACCATAATTAGTTAGTTATTTCGGG 57.666 33.333 0.00 0.00 0.00 5.14
5989 7013 9.691362 CTTTGCAAAAAGTACACCATAATTAGT 57.309 29.630 13.84 0.00 0.00 2.24
5990 7014 9.139174 CCTTTGCAAAAAGTACACCATAATTAG 57.861 33.333 13.84 0.00 0.00 1.73
5991 7015 8.643324 ACCTTTGCAAAAAGTACACCATAATTA 58.357 29.630 13.84 0.00 0.00 1.40
5992 7016 7.505258 ACCTTTGCAAAAAGTACACCATAATT 58.495 30.769 13.84 0.00 0.00 1.40
5993 7017 7.061566 ACCTTTGCAAAAAGTACACCATAAT 57.938 32.000 13.84 0.00 0.00 1.28
5994 7018 6.472686 ACCTTTGCAAAAAGTACACCATAA 57.527 33.333 13.84 0.00 0.00 1.90
5995 7019 6.472686 AACCTTTGCAAAAAGTACACCATA 57.527 33.333 13.84 0.00 0.00 2.74
5996 7020 5.351948 AACCTTTGCAAAAAGTACACCAT 57.648 34.783 13.84 0.00 0.00 3.55
5997 7021 4.810191 AACCTTTGCAAAAAGTACACCA 57.190 36.364 13.84 0.00 0.00 4.17
5998 7022 5.898174 AGTAACCTTTGCAAAAAGTACACC 58.102 37.500 13.84 3.50 0.00 4.16
5999 7023 5.975344 GGAGTAACCTTTGCAAAAAGTACAC 59.025 40.000 13.84 13.62 35.41 2.90
6000 7024 5.068067 GGGAGTAACCTTTGCAAAAAGTACA 59.932 40.000 13.84 3.28 38.98 2.90
6001 7025 5.068067 TGGGAGTAACCTTTGCAAAAAGTAC 59.932 40.000 13.84 13.84 38.98 2.73
6002 7026 5.068067 GTGGGAGTAACCTTTGCAAAAAGTA 59.932 40.000 13.84 2.55 38.98 2.24
6003 7027 4.027437 TGGGAGTAACCTTTGCAAAAAGT 58.973 39.130 13.84 10.76 38.98 2.66
6004 7028 4.368315 GTGGGAGTAACCTTTGCAAAAAG 58.632 43.478 13.84 10.10 38.98 2.27
6005 7029 3.133183 GGTGGGAGTAACCTTTGCAAAAA 59.867 43.478 13.84 0.00 38.98 1.94
6006 7030 2.696187 GGTGGGAGTAACCTTTGCAAAA 59.304 45.455 13.84 0.00 38.98 2.44
6007 7031 2.091555 AGGTGGGAGTAACCTTTGCAAA 60.092 45.455 12.14 12.14 46.14 3.68
6008 7032 1.497286 AGGTGGGAGTAACCTTTGCAA 59.503 47.619 0.00 0.00 46.14 4.08
6009 7033 1.145571 AGGTGGGAGTAACCTTTGCA 58.854 50.000 0.00 0.00 46.14 4.08
6015 7039 2.537143 TCTGAAGAGGTGGGAGTAACC 58.463 52.381 0.00 0.00 38.03 2.85
6016 7040 4.508662 CAATCTGAAGAGGTGGGAGTAAC 58.491 47.826 0.00 0.00 0.00 2.50
6017 7041 3.519510 CCAATCTGAAGAGGTGGGAGTAA 59.480 47.826 5.33 0.00 32.44 2.24
6018 7042 3.107601 CCAATCTGAAGAGGTGGGAGTA 58.892 50.000 5.33 0.00 32.44 2.59
6019 7043 1.912043 CCAATCTGAAGAGGTGGGAGT 59.088 52.381 5.33 0.00 32.44 3.85
6020 7044 2.706339 CCAATCTGAAGAGGTGGGAG 57.294 55.000 5.33 0.00 32.44 4.30
6022 7046 1.065126 GTCCCAATCTGAAGAGGTGGG 60.065 57.143 19.36 19.36 46.78 4.61
6023 7047 1.630369 TGTCCCAATCTGAAGAGGTGG 59.370 52.381 6.03 6.03 34.59 4.61
6024 7048 3.423539 TTGTCCCAATCTGAAGAGGTG 57.576 47.619 0.00 0.00 0.00 4.00
6025 7049 4.043310 TCATTTGTCCCAATCTGAAGAGGT 59.957 41.667 0.00 0.00 0.00 3.85
6026 7050 4.592942 TCATTTGTCCCAATCTGAAGAGG 58.407 43.478 0.00 0.00 0.00 3.69
6027 7051 5.450137 GCATCATTTGTCCCAATCTGAAGAG 60.450 44.000 0.00 0.00 0.00 2.85
6028 7052 4.400251 GCATCATTTGTCCCAATCTGAAGA 59.600 41.667 0.00 0.00 0.00 2.87
6029 7053 4.158949 TGCATCATTTGTCCCAATCTGAAG 59.841 41.667 0.00 0.00 0.00 3.02
6030 7054 4.082081 GTGCATCATTTGTCCCAATCTGAA 60.082 41.667 0.00 0.00 0.00 3.02
6031 7055 3.444742 GTGCATCATTTGTCCCAATCTGA 59.555 43.478 0.00 0.00 0.00 3.27
6032 7056 3.193903 TGTGCATCATTTGTCCCAATCTG 59.806 43.478 0.00 0.00 0.00 2.90
6033 7057 3.433343 TGTGCATCATTTGTCCCAATCT 58.567 40.909 0.00 0.00 0.00 2.40
6034 7058 3.872511 TGTGCATCATTTGTCCCAATC 57.127 42.857 0.00 0.00 0.00 2.67
6035 7059 6.779049 ACTATATGTGCATCATTTGTCCCAAT 59.221 34.615 7.02 0.00 37.91 3.16
6036 7060 6.039605 CACTATATGTGCATCATTTGTCCCAA 59.960 38.462 7.02 0.00 40.06 4.12
6037 7061 5.532032 CACTATATGTGCATCATTTGTCCCA 59.468 40.000 7.02 0.00 40.06 4.37
6038 7062 6.005583 CACTATATGTGCATCATTTGTCCC 57.994 41.667 7.02 0.00 40.06 4.46
6081 7105 4.331166 TTTCGCGCGAGACACGGA 62.331 61.111 32.74 13.79 42.83 4.69
6082 7106 3.827784 CTTTCGCGCGAGACACGG 61.828 66.667 32.74 12.73 42.83 4.94
6083 7107 1.872325 TTTCTTTCGCGCGAGACACG 61.872 55.000 32.74 16.67 45.66 4.49
6084 7108 0.231279 TTTTCTTTCGCGCGAGACAC 59.769 50.000 32.74 0.00 0.00 3.67
6085 7109 0.931702 TTTTTCTTTCGCGCGAGACA 59.068 45.000 32.74 17.69 0.00 3.41
6086 7110 3.721466 TTTTTCTTTCGCGCGAGAC 57.279 47.368 32.74 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.