Multiple sequence alignment - TraesCS4A01G057400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G057400 chr4A 100.000 6580 0 0 1 6580 48159924 48153345 0.000000e+00 12152.0
1 TraesCS4A01G057400 chr4B 88.931 3198 222 60 375 3504 512548471 512551604 0.000000e+00 3823.0
2 TraesCS4A01G057400 chr4B 88.851 1471 120 13 3552 5008 512551720 512553160 0.000000e+00 1768.0
3 TraesCS4A01G057400 chr4B 90.564 1028 77 10 5043 6055 512553378 512554400 0.000000e+00 1343.0
4 TraesCS4A01G057400 chr4B 92.077 366 27 2 6057 6421 512554432 512554796 1.270000e-141 514.0
5 TraesCS4A01G057400 chr4B 89.313 131 11 3 6452 6580 512554796 512554925 1.900000e-35 161.0
6 TraesCS4A01G057400 chr4B 89.076 119 13 0 1 119 512547908 512548026 1.480000e-31 148.0
7 TraesCS4A01G057400 chr4B 97.674 43 1 0 5003 5045 512553197 512553239 2.540000e-09 75.0
8 TraesCS4A01G057400 chr4D 89.053 2567 185 50 3493 6018 415913235 415915746 0.000000e+00 3096.0
9 TraesCS4A01G057400 chr4D 88.083 1309 88 28 651 1947 415910557 415911809 0.000000e+00 1491.0
10 TraesCS4A01G057400 chr4D 91.429 665 46 10 2844 3500 415912356 415913017 0.000000e+00 902.0
11 TraesCS4A01G057400 chr4D 87.311 528 54 6 6057 6580 415915831 415916349 5.680000e-165 592.0
12 TraesCS4A01G057400 chr4D 86.517 534 64 7 120 649 415908978 415909507 1.230000e-161 580.0
13 TraesCS4A01G057400 chr4D 90.045 442 30 11 2103 2540 415911894 415912325 1.600000e-155 560.0
14 TraesCS4A01G057400 chr4D 80.539 519 79 14 6057 6560 79709292 79709803 4.820000e-101 379.0
15 TraesCS4A01G057400 chr4D 79.355 465 85 8 6066 6525 365776407 365775949 3.830000e-82 316.0
16 TraesCS4A01G057400 chr4D 87.395 119 15 0 1 119 415908159 415908277 3.200000e-28 137.0
17 TraesCS4A01G057400 chr4D 84.173 139 22 0 348 486 416035032 416035170 1.150000e-27 135.0
18 TraesCS4A01G057400 chr5D 87.660 705 71 9 3558 4258 9919342 9918650 0.000000e+00 806.0
19 TraesCS4A01G057400 chr7A 84.463 708 81 14 3558 4258 165003402 165002717 0.000000e+00 671.0
20 TraesCS4A01G057400 chr7A 82.100 419 62 7 6152 6560 627225327 627225742 4.880000e-91 346.0
21 TraesCS4A01G057400 chr5A 86.914 405 41 6 3858 4258 3316008 3316404 1.680000e-120 444.0
22 TraesCS4A01G057400 chr5A 80.235 511 94 6 6055 6560 679483431 679483939 1.730000e-100 377.0
23 TraesCS4A01G057400 chr5A 89.362 47 5 0 446 492 485590437 485590391 7.130000e-05 60.2
24 TraesCS4A01G057400 chr2D 80.392 510 83 15 6056 6555 610013937 610013435 8.060000e-99 372.0
25 TraesCS4A01G057400 chr2D 80.159 252 45 4 6055 6303 20380481 20380232 4.050000e-42 183.0
26 TraesCS4A01G057400 chrUn 79.961 514 87 15 6057 6560 430915527 430916034 1.350000e-96 364.0
27 TraesCS4A01G057400 chr5B 79.961 514 87 16 6057 6560 266347616 266347109 1.350000e-96 364.0
28 TraesCS4A01G057400 chr5B 78.233 464 80 16 6106 6560 586211391 586210940 1.810000e-70 278.0
29 TraesCS4A01G057400 chr5B 100.000 31 0 0 6530 6560 364082298 364082268 2.560000e-04 58.4
30 TraesCS4A01G057400 chr3A 77.650 434 92 5 6127 6557 111652543 111652974 6.550000e-65 259.0
31 TraesCS4A01G057400 chr3A 86.522 230 24 5 4601 4824 64998818 64999046 5.100000e-61 246.0
32 TraesCS4A01G057400 chr3B 81.183 186 31 4 359 542 476405940 476405757 5.320000e-31 147.0
33 TraesCS4A01G057400 chr2B 82.456 114 19 1 368 480 722640842 722640729 1.510000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G057400 chr4A 48153345 48159924 6579 True 12152.000000 12152 100.000000 1 6580 1 chr4A.!!$R1 6579
1 TraesCS4A01G057400 chr4B 512547908 512554925 7017 False 1118.857143 3823 90.926571 1 6580 7 chr4B.!!$F1 6579
2 TraesCS4A01G057400 chr4D 415908159 415916349 8190 False 1051.142857 3096 88.547571 1 6580 7 chr4D.!!$F3 6579
3 TraesCS4A01G057400 chr4D 79709292 79709803 511 False 379.000000 379 80.539000 6057 6560 1 chr4D.!!$F1 503
4 TraesCS4A01G057400 chr5D 9918650 9919342 692 True 806.000000 806 87.660000 3558 4258 1 chr5D.!!$R1 700
5 TraesCS4A01G057400 chr7A 165002717 165003402 685 True 671.000000 671 84.463000 3558 4258 1 chr7A.!!$R1 700
6 TraesCS4A01G057400 chr5A 679483431 679483939 508 False 377.000000 377 80.235000 6055 6560 1 chr5A.!!$F2 505
7 TraesCS4A01G057400 chr2D 610013435 610013937 502 True 372.000000 372 80.392000 6056 6555 1 chr2D.!!$R2 499
8 TraesCS4A01G057400 chrUn 430915527 430916034 507 False 364.000000 364 79.961000 6057 6560 1 chrUn.!!$F1 503
9 TraesCS4A01G057400 chr5B 266347109 266347616 507 True 364.000000 364 79.961000 6057 6560 1 chr5B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.108186 TGCATCTCAACGCCGAAGAT 60.108 50.0 0.00 0.00 0.00 2.40 F
1465 3262 0.036105 TGTGGCAACTCATGAGCGAT 60.036 50.0 22.83 6.54 34.61 4.58 F
1707 3508 0.036732 CAAGTAAGCCTGGCAGTCCA 59.963 55.0 22.65 0.00 40.85 4.02 F
3072 4926 0.036732 TTGCCAGTGGAGCAACTAGG 59.963 55.0 15.20 0.00 44.95 3.02 F
5037 7196 0.179086 GGAGCTTAGCCTCTCAGTGC 60.179 60.0 0.00 0.00 32.43 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 3852 0.179009 ATCACACAGCAACAGCCACT 60.179 50.000 0.0 0.0 0.00 4.00 R
3256 5110 0.550914 GCATACCCAGTCCCATTCCA 59.449 55.000 0.0 0.0 0.00 3.53 R
3482 5342 1.480498 GCCTTTCTTCCTTTCACCCCA 60.480 52.381 0.0 0.0 0.00 4.96 R
5067 7367 2.559440 AGATTCTTTGATCTGGAGCGC 58.441 47.619 0.0 0.0 35.13 5.92 R
6056 8410 0.034767 ACGAGGTGTATGTCCGAGGA 60.035 55.000 0.0 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.843309 AGACCCATCACAACCACACA 59.157 50.000 0.00 0.00 0.00 3.72
43 44 2.037136 ACACTCTGCATCAAGCCGC 61.037 57.895 0.00 0.00 44.83 6.53
48 49 2.747460 TGCATCAAGCCGCTGTCC 60.747 61.111 0.00 0.00 44.83 4.02
51 52 1.725665 CATCAAGCCGCTGTCCATG 59.274 57.895 0.00 0.00 0.00 3.66
68 69 2.287188 CCATGTATTGCATCTCAACGCC 60.287 50.000 0.00 0.00 37.53 5.68
73 74 0.320334 TTGCATCTCAACGCCGAAGA 60.320 50.000 0.00 0.00 0.00 2.87
74 75 0.108186 TGCATCTCAACGCCGAAGAT 60.108 50.000 0.00 0.00 0.00 2.40
135 836 1.413077 GCCTACTTGGGCGTAAGAGAT 59.587 52.381 7.07 0.00 42.82 2.75
138 839 3.322254 CCTACTTGGGCGTAAGAGATGAT 59.678 47.826 7.07 0.00 43.02 2.45
139 840 3.914426 ACTTGGGCGTAAGAGATGATT 57.086 42.857 7.07 0.00 43.02 2.57
195 898 5.745514 TGTAGATGTAGACTCGCGTTATTC 58.254 41.667 5.77 0.00 0.00 1.75
201 904 1.207377 GACTCGCGTTATTCGGCTCC 61.207 60.000 5.77 0.00 40.26 4.70
203 906 2.581409 CGCGTTATTCGGCTCCGT 60.581 61.111 8.28 0.00 40.74 4.69
222 925 6.288941 TCCGTGAATCATTTGTAAGTAGGA 57.711 37.500 0.00 0.00 0.00 2.94
228 931 4.730949 TCATTTGTAAGTAGGAGACGGG 57.269 45.455 0.00 0.00 0.00 5.28
241 944 3.010420 GGAGACGGGGAGAAAGAAATTG 58.990 50.000 0.00 0.00 0.00 2.32
243 946 2.375509 AGACGGGGAGAAAGAAATTGGT 59.624 45.455 0.00 0.00 0.00 3.67
251 954 6.187682 GGGAGAAAGAAATTGGTCATCCTTA 58.812 40.000 0.00 0.00 34.23 2.69
259 962 7.918076 AGAAATTGGTCATCCTTAGTTGAGTA 58.082 34.615 0.00 0.00 34.23 2.59
268 971 8.884726 GTCATCCTTAGTTGAGTAGGAAATTTC 58.115 37.037 9.83 9.83 41.18 2.17
269 972 8.602424 TCATCCTTAGTTGAGTAGGAAATTTCA 58.398 33.333 19.49 0.00 41.18 2.69
270 973 8.669243 CATCCTTAGTTGAGTAGGAAATTTCAC 58.331 37.037 19.49 10.12 41.18 3.18
271 974 7.974504 TCCTTAGTTGAGTAGGAAATTTCACT 58.025 34.615 19.49 14.55 35.20 3.41
302 1005 1.349067 ACCGGTTCTTGGAGCTAGTT 58.651 50.000 0.00 0.00 0.00 2.24
303 1006 2.532843 ACCGGTTCTTGGAGCTAGTTA 58.467 47.619 0.00 0.00 0.00 2.24
305 1008 3.518303 ACCGGTTCTTGGAGCTAGTTATT 59.482 43.478 0.00 0.00 0.00 1.40
306 1009 4.019591 ACCGGTTCTTGGAGCTAGTTATTT 60.020 41.667 0.00 0.00 0.00 1.40
333 1036 8.645730 TTTAACACAGTACAATCGTAGAAACA 57.354 30.769 0.00 0.00 43.58 2.83
335 1038 5.593968 ACACAGTACAATCGTAGAAACACA 58.406 37.500 0.00 0.00 43.58 3.72
336 1039 6.220930 ACACAGTACAATCGTAGAAACACAT 58.779 36.000 0.00 0.00 43.58 3.21
341 1044 9.511144 CAGTACAATCGTAGAAACACATATACA 57.489 33.333 0.00 0.00 43.58 2.29
358 1061 2.010145 ACACGCACATACACTCATCC 57.990 50.000 0.00 0.00 0.00 3.51
360 1063 0.178068 ACGCACATACACTCATCCCC 59.822 55.000 0.00 0.00 0.00 4.81
362 1065 0.464036 GCACATACACTCATCCCCGA 59.536 55.000 0.00 0.00 0.00 5.14
369 1072 0.536724 CACTCATCCCCGACATCACA 59.463 55.000 0.00 0.00 0.00 3.58
386 1089 5.934043 ACATCACATCTTGAGATTGACGAAA 59.066 36.000 0.00 0.00 37.77 3.46
388 1091 7.120285 ACATCACATCTTGAGATTGACGAAATT 59.880 33.333 0.00 0.00 37.77 1.82
395 1098 6.878923 TCTTGAGATTGACGAAATTACCACAT 59.121 34.615 0.00 0.00 0.00 3.21
396 1099 6.421377 TGAGATTGACGAAATTACCACATG 57.579 37.500 0.00 0.00 0.00 3.21
398 1101 3.463533 TTGACGAAATTACCACATGCG 57.536 42.857 0.00 0.00 0.00 4.73
399 1102 2.418692 TGACGAAATTACCACATGCGT 58.581 42.857 0.00 0.00 0.00 5.24
409 1112 0.525668 CCACATGCGTCTCGTAGTCC 60.526 60.000 0.00 0.00 0.00 3.85
438 1141 3.243771 ACGTCTCCTTCAACTGAACGAAT 60.244 43.478 7.63 0.00 0.00 3.34
441 1144 5.577164 CGTCTCCTTCAACTGAACGAATATT 59.423 40.000 0.00 0.00 0.00 1.28
491 1194 1.154150 GCGAACATCAGTGGCAAGC 60.154 57.895 0.00 0.00 0.00 4.01
492 1195 1.133253 CGAACATCAGTGGCAAGCG 59.867 57.895 0.00 0.00 0.00 4.68
495 1198 1.454572 AACATCAGTGGCAAGCGCAA 61.455 50.000 11.47 0.00 41.24 4.85
502 1205 1.001378 AGTGGCAAGCGCAAAACTTAG 60.001 47.619 11.47 0.00 41.24 2.18
543 1248 6.381498 TCACCATAAGAAACCTAACCATCA 57.619 37.500 0.00 0.00 0.00 3.07
552 1257 4.576330 AACCTAACCATCAAAGCTAGCT 57.424 40.909 12.68 12.68 0.00 3.32
692 2447 1.623973 GCTTACGAACACTGGGCGTC 61.624 60.000 0.00 0.00 39.24 5.19
701 2456 3.350219 ACACTGGGCGTCTGAAATTAT 57.650 42.857 0.00 0.00 0.00 1.28
702 2457 3.686016 ACACTGGGCGTCTGAAATTATT 58.314 40.909 0.00 0.00 0.00 1.40
703 2458 4.839121 ACACTGGGCGTCTGAAATTATTA 58.161 39.130 0.00 0.00 0.00 0.98
704 2459 4.634443 ACACTGGGCGTCTGAAATTATTAC 59.366 41.667 0.00 0.00 0.00 1.89
705 2460 3.869246 ACTGGGCGTCTGAAATTATTACG 59.131 43.478 0.00 0.00 36.67 3.18
806 2578 4.385405 GTGGAGCGGCTGCAGAGT 62.385 66.667 24.95 0.00 46.23 3.24
1332 3120 0.596083 CTCCACGCTCGCCATTAGAG 60.596 60.000 0.00 0.00 38.68 2.43
1333 3121 1.592669 CCACGCTCGCCATTAGAGG 60.593 63.158 0.00 0.00 36.31 3.69
1334 3122 1.141881 CACGCTCGCCATTAGAGGT 59.858 57.895 0.00 0.00 36.31 3.85
1335 3123 0.460284 CACGCTCGCCATTAGAGGTT 60.460 55.000 0.00 0.00 36.31 3.50
1336 3124 0.249398 ACGCTCGCCATTAGAGGTTT 59.751 50.000 0.00 0.00 36.31 3.27
1337 3125 1.479323 ACGCTCGCCATTAGAGGTTTA 59.521 47.619 0.00 0.00 36.31 2.01
1338 3126 2.128035 CGCTCGCCATTAGAGGTTTAG 58.872 52.381 0.00 0.00 36.31 1.85
1339 3127 2.223735 CGCTCGCCATTAGAGGTTTAGA 60.224 50.000 0.00 0.00 36.31 2.10
1352 3140 5.848406 AGAGGTTTAGAACACTGTTCTCTG 58.152 41.667 24.69 0.00 0.00 3.35
1380 3168 1.526887 CAGTGACAACCGTTACAGCTG 59.473 52.381 13.48 13.48 34.16 4.24
1385 3182 2.806244 GACAACCGTTACAGCTGTGAAT 59.194 45.455 29.57 7.52 0.00 2.57
1386 3183 3.211045 ACAACCGTTACAGCTGTGAATT 58.789 40.909 29.57 13.10 0.00 2.17
1387 3184 4.382291 ACAACCGTTACAGCTGTGAATTA 58.618 39.130 29.57 5.81 0.00 1.40
1388 3185 5.001232 ACAACCGTTACAGCTGTGAATTAT 58.999 37.500 29.57 8.78 0.00 1.28
1389 3186 5.106712 ACAACCGTTACAGCTGTGAATTATG 60.107 40.000 29.57 21.09 0.00 1.90
1390 3187 4.827692 ACCGTTACAGCTGTGAATTATGA 58.172 39.130 29.57 3.27 0.00 2.15
1391 3188 4.630069 ACCGTTACAGCTGTGAATTATGAC 59.370 41.667 29.57 12.46 0.00 3.06
1392 3189 4.870426 CCGTTACAGCTGTGAATTATGACT 59.130 41.667 29.57 0.00 0.00 3.41
1393 3190 6.040247 CCGTTACAGCTGTGAATTATGACTA 58.960 40.000 29.57 1.01 0.00 2.59
1415 3212 1.089920 CTGGTGCCTCTGAATTTCGG 58.910 55.000 0.00 0.00 0.00 4.30
1465 3262 0.036105 TGTGGCAACTCATGAGCGAT 60.036 50.000 22.83 6.54 34.61 4.58
1471 3268 2.417933 GCAACTCATGAGCGATGACTTT 59.582 45.455 22.83 3.90 36.06 2.66
1485 3282 1.425066 TGACTTTCTGATTGGCAGGGT 59.575 47.619 0.00 0.00 44.98 4.34
1560 3357 6.183360 CCTTACAGGTAGATCCTAAACCCTTC 60.183 46.154 0.00 0.00 46.24 3.46
1561 3358 3.705072 ACAGGTAGATCCTAAACCCTTCG 59.295 47.826 0.00 0.00 46.24 3.79
1572 3369 6.121590 TCCTAAACCCTTCGTTTTTACAGTT 58.878 36.000 0.00 0.00 42.15 3.16
1595 3392 1.547820 TGTTTGCAAGCTTGTTGGACA 59.452 42.857 26.55 21.03 0.00 4.02
1596 3393 1.926510 GTTTGCAAGCTTGTTGGACAC 59.073 47.619 26.55 9.43 0.00 3.67
1597 3394 0.459489 TTGCAAGCTTGTTGGACACC 59.541 50.000 26.55 8.72 0.00 4.16
1601 3398 2.813061 CAAGCTTGTTGGACACCAAAG 58.187 47.619 18.65 1.90 45.73 2.77
1605 3402 2.287608 GCTTGTTGGACACCAAAGCTAC 60.288 50.000 15.58 2.48 45.73 3.58
1615 3412 3.222603 CACCAAAGCTACCTTGGTCTTT 58.777 45.455 16.76 0.00 33.25 2.52
1622 3419 5.153950 AGCTACCTTGGTCTTTAGTTCTG 57.846 43.478 0.00 0.00 0.00 3.02
1624 3421 4.930405 GCTACCTTGGTCTTTAGTTCTGAC 59.070 45.833 0.00 0.00 0.00 3.51
1697 3498 5.390991 GCAATGTTGTCTACTCAAGTAAGCC 60.391 44.000 0.00 0.00 0.00 4.35
1705 3506 1.002544 ACTCAAGTAAGCCTGGCAGTC 59.997 52.381 22.65 9.99 0.00 3.51
1707 3508 0.036732 CAAGTAAGCCTGGCAGTCCA 59.963 55.000 22.65 0.00 40.85 4.02
1825 3626 1.405526 GGCGTAGGTGAGAAATCTGCA 60.406 52.381 0.00 0.00 0.00 4.41
1853 3654 4.227300 TCATAGGTGCCACTTTTCAGGTAT 59.773 41.667 0.00 0.00 0.00 2.73
1854 3655 3.525800 AGGTGCCACTTTTCAGGTATT 57.474 42.857 0.00 0.00 0.00 1.89
1878 3679 6.439636 TTTCCTCCACCAATCTCCATATAG 57.560 41.667 0.00 0.00 0.00 1.31
1880 3681 3.054802 CCTCCACCAATCTCCATATAGGC 60.055 52.174 0.00 0.00 37.29 3.93
1881 3682 3.843027 CTCCACCAATCTCCATATAGGCT 59.157 47.826 0.00 0.00 37.29 4.58
1882 3683 4.242811 TCCACCAATCTCCATATAGGCTT 58.757 43.478 0.00 0.00 37.29 4.35
1883 3684 4.042062 TCCACCAATCTCCATATAGGCTTG 59.958 45.833 0.00 0.00 37.29 4.01
1884 3685 3.755378 CACCAATCTCCATATAGGCTTGC 59.245 47.826 0.00 0.00 37.29 4.01
1885 3686 3.005554 CCAATCTCCATATAGGCTTGCG 58.994 50.000 0.00 0.00 37.29 4.85
1886 3687 2.393271 ATCTCCATATAGGCTTGCGC 57.607 50.000 0.00 0.00 37.29 6.09
1887 3688 1.047801 TCTCCATATAGGCTTGCGCA 58.952 50.000 5.66 5.66 38.10 6.09
1906 3713 0.886563 AAATGCCTGAGCTTGCACTC 59.113 50.000 8.44 0.00 40.88 3.51
1916 3723 1.981495 AGCTTGCACTCTTTCCTAGGT 59.019 47.619 9.08 0.00 0.00 3.08
1917 3724 2.079925 GCTTGCACTCTTTCCTAGGTG 58.920 52.381 9.08 0.00 0.00 4.00
1918 3725 2.079925 CTTGCACTCTTTCCTAGGTGC 58.920 52.381 9.08 10.69 44.50 5.01
1919 3726 1.352083 TGCACTCTTTCCTAGGTGCT 58.648 50.000 17.73 0.00 44.53 4.40
1920 3727 2.536066 TGCACTCTTTCCTAGGTGCTA 58.464 47.619 17.73 5.09 44.53 3.49
1921 3728 2.497675 TGCACTCTTTCCTAGGTGCTAG 59.502 50.000 17.73 10.58 44.53 3.42
1924 3731 2.498078 ACTCTTTCCTAGGTGCTAGCAC 59.502 50.000 34.99 34.99 45.49 4.40
1957 3764 6.420903 ACGAATTATCTCATGAACGTGTATGG 59.579 38.462 11.11 4.33 0.00 2.74
1969 3808 5.694458 TGAACGTGTATGGATGTGCATATAC 59.306 40.000 10.07 10.07 0.00 1.47
1973 3812 5.164090 CGTGTATGGATGTGCATATACGAAC 60.164 44.000 27.03 5.95 45.29 3.95
1985 3824 9.758651 TGTGCATATACGAACAATATTACTTCT 57.241 29.630 0.00 0.00 0.00 2.85
2013 3852 4.927267 ATTTTGGATCGATATGCCCCTA 57.073 40.909 0.00 0.00 0.00 3.53
2049 3888 2.126882 TGATCCATCATTCGAAGGGGT 58.873 47.619 10.29 1.66 30.58 4.95
2050 3889 2.158769 TGATCCATCATTCGAAGGGGTG 60.159 50.000 10.29 7.85 30.58 4.61
2081 3931 2.032178 GCCAACAACCTAGCGATGATTC 59.968 50.000 0.00 0.00 0.00 2.52
2113 3963 3.068448 TCAATTGCATGAGCTGTGTGTTT 59.932 39.130 0.00 0.00 42.74 2.83
2117 3967 2.227149 TGCATGAGCTGTGTGTTTGATC 59.773 45.455 0.00 0.00 42.74 2.92
2130 3981 4.458989 TGTGTTTGATCTGGCCATAAACTC 59.541 41.667 23.61 21.43 33.61 3.01
2131 3982 4.458989 GTGTTTGATCTGGCCATAAACTCA 59.541 41.667 23.61 13.95 33.61 3.41
2291 4143 3.512329 TGTTCGCTTTCTATCAGGTACCA 59.488 43.478 15.94 0.00 0.00 3.25
2343 4195 8.455903 ACATTATCATCTTACCACTGGAAATG 57.544 34.615 0.71 0.42 0.00 2.32
2398 4250 6.024552 TGAGATAATTTGTTTGGCCAGTTC 57.975 37.500 5.11 0.84 0.00 3.01
2417 4269 5.117745 CAGTTCGTCATTTGTCTGTACTCTG 59.882 44.000 0.00 0.00 0.00 3.35
2418 4270 4.848562 TCGTCATTTGTCTGTACTCTGT 57.151 40.909 0.00 0.00 0.00 3.41
2474 4327 3.084536 TCCAACCTTGATAGCAATGCA 57.915 42.857 8.35 0.00 32.68 3.96
2572 4425 0.693049 TGTTTCTTCCCTCCCTCTGC 59.307 55.000 0.00 0.00 0.00 4.26
2577 4430 1.561542 TCTTCCCTCCCTCTGCATTTC 59.438 52.381 0.00 0.00 0.00 2.17
2580 4433 1.211456 CCCTCCCTCTGCATTTCTCT 58.789 55.000 0.00 0.00 0.00 3.10
2586 4439 2.422832 CCCTCTGCATTTCTCTTCTTGC 59.577 50.000 0.00 0.00 35.67 4.01
2608 4461 4.211374 GCGTCATATAGCCAAGTTAGGTTG 59.789 45.833 0.00 0.00 0.00 3.77
2629 4482 2.977405 GTGCTAGCACCTTTTGAGTG 57.023 50.000 33.32 0.00 40.79 3.51
2667 4520 2.091885 TCCCTCATTGCTTACCCAATCC 60.092 50.000 0.00 0.00 33.35 3.01
2668 4521 2.358090 CCCTCATTGCTTACCCAATCCA 60.358 50.000 0.00 0.00 33.35 3.41
2684 4537 6.160459 ACCCAATCCAAGGTTTCTACTATCAT 59.840 38.462 0.00 0.00 29.94 2.45
2695 4548 9.003658 AGGTTTCTACTATCATTTTGAACTGTG 57.996 33.333 0.00 0.00 0.00 3.66
2708 4561 4.174411 TGAACTGTGAATGAGTAGGACG 57.826 45.455 0.00 0.00 0.00 4.79
2757 4610 8.206867 TGCTATATTAGGCAGATGGTATGATTC 58.793 37.037 0.00 0.00 34.22 2.52
2758 4611 8.206867 GCTATATTAGGCAGATGGTATGATTCA 58.793 37.037 0.00 0.00 0.00 2.57
2762 4615 5.057843 AGGCAGATGGTATGATTCAATGT 57.942 39.130 0.00 0.00 0.00 2.71
2765 4618 4.277672 GCAGATGGTATGATTCAATGTGCT 59.722 41.667 9.68 0.00 0.00 4.40
2768 4621 6.484308 CAGATGGTATGATTCAATGTGCTACA 59.516 38.462 0.00 0.00 0.00 2.74
2780 4633 5.048782 TCAATGTGCTACATGTTCCTGAAAC 60.049 40.000 2.30 0.00 37.97 2.78
2797 4650 8.777865 TCCTGAAACTACATCTTACATGAAAG 57.222 34.615 0.00 0.00 0.00 2.62
2809 4662 2.632377 ACATGAAAGCTGGGTCATACG 58.368 47.619 0.00 1.09 33.15 3.06
2837 4690 8.784043 AGAACACTTTTCCTATACACATGAAAC 58.216 33.333 0.00 0.00 0.00 2.78
2958 4811 5.009210 AGTCTATCTCGGTCATTCAGTAAGC 59.991 44.000 0.00 0.00 0.00 3.09
2966 4819 4.876107 CGGTCATTCAGTAAGCCAGTTTAT 59.124 41.667 0.00 0.00 0.00 1.40
3072 4926 0.036732 TTGCCAGTGGAGCAACTAGG 59.963 55.000 15.20 0.00 44.95 3.02
3075 4929 1.448540 CAGTGGAGCAACTAGGGCG 60.449 63.158 0.00 0.00 36.08 6.13
3155 5009 7.595130 GGTACCTTTGAACAATCTCAACATTTC 59.405 37.037 4.06 0.00 35.07 2.17
3156 5010 7.352079 ACCTTTGAACAATCTCAACATTTCT 57.648 32.000 0.00 0.00 35.07 2.52
3163 5017 8.559536 TGAACAATCTCAACATTTCTTGTAGAC 58.440 33.333 0.00 0.00 37.68 2.59
3166 5020 9.725019 ACAATCTCAACATTTCTTGTAGACATA 57.275 29.630 0.00 0.00 37.68 2.29
3209 5063 8.547967 TCACTGAAATGTATCTAAAGGAACAC 57.452 34.615 0.00 0.00 0.00 3.32
3226 5080 3.094484 ACACACCCAACTTTTCAGGAA 57.906 42.857 0.00 0.00 0.00 3.36
3235 5089 0.886563 CTTTTCAGGAAGGCAGCCAG 59.113 55.000 15.80 0.00 0.00 4.85
3271 5125 0.475632 TGTCTGGAATGGGACTGGGT 60.476 55.000 0.00 0.00 34.01 4.51
3392 5248 7.272978 ACTAGTTAGACATTGCCGATTACATT 58.727 34.615 0.00 0.00 0.00 2.71
3393 5249 6.363577 AGTTAGACATTGCCGATTACATTG 57.636 37.500 0.00 0.00 0.00 2.82
3398 5254 6.092748 AGACATTGCCGATTACATTGTTTTC 58.907 36.000 0.00 0.00 33.17 2.29
3399 5255 5.777802 ACATTGCCGATTACATTGTTTTCA 58.222 33.333 0.00 0.00 29.78 2.69
3400 5256 6.219473 ACATTGCCGATTACATTGTTTTCAA 58.781 32.000 0.00 0.00 44.33 2.69
3404 5260 6.507900 TGCCGATTACATTGTTTTCAAAAGA 58.492 32.000 0.00 0.00 43.39 2.52
3443 5302 7.254898 CGAAACATCTGTATAATCATGGCTGTT 60.255 37.037 0.00 0.00 0.00 3.16
3482 5342 8.877864 TCCTGTCAAAAACAATTATGGTCTAT 57.122 30.769 0.00 0.00 37.45 1.98
3490 5350 5.725551 ACAATTATGGTCTATGGGGTGAA 57.274 39.130 0.00 0.00 0.00 3.18
3500 5360 4.944317 GTCTATGGGGTGAAAGGAAGAAAG 59.056 45.833 0.00 0.00 0.00 2.62
3514 5599 3.243873 GGAAGAAAGGCACCCAAAAGAAG 60.244 47.826 0.00 0.00 0.00 2.85
3515 5600 3.312736 AGAAAGGCACCCAAAAGAAGA 57.687 42.857 0.00 0.00 0.00 2.87
3517 5602 2.001076 AAGGCACCCAAAAGAAGAGG 57.999 50.000 0.00 0.00 0.00 3.69
3518 5603 1.149101 AGGCACCCAAAAGAAGAGGA 58.851 50.000 0.00 0.00 0.00 3.71
3520 5605 2.110721 AGGCACCCAAAAGAAGAGGAAT 59.889 45.455 0.00 0.00 0.00 3.01
3521 5606 2.899900 GGCACCCAAAAGAAGAGGAATT 59.100 45.455 0.00 0.00 0.00 2.17
3522 5607 4.086457 GGCACCCAAAAGAAGAGGAATTA 58.914 43.478 0.00 0.00 0.00 1.40
3523 5608 4.158579 GGCACCCAAAAGAAGAGGAATTAG 59.841 45.833 0.00 0.00 0.00 1.73
3526 5611 5.012893 ACCCAAAAGAAGAGGAATTAGCAG 58.987 41.667 0.00 0.00 0.00 4.24
3530 5615 6.183360 CCAAAAGAAGAGGAATTAGCAGATGG 60.183 42.308 0.00 0.00 0.00 3.51
3539 5624 7.772757 AGAGGAATTAGCAGATGGAAACTAAAG 59.227 37.037 0.00 0.00 0.00 1.85
3595 5687 3.129813 TGTGCTGCATGAATTCCAGATTC 59.870 43.478 5.27 4.53 0.00 2.52
3617 5709 3.770933 CCATTGGGTCCTGTCAATTTGAT 59.229 43.478 1.78 0.00 31.95 2.57
3649 5741 6.948309 AGATATCCAAACAAGGCAGTAACTTT 59.052 34.615 0.00 0.00 0.00 2.66
3651 5743 6.575162 ATCCAAACAAGGCAGTAACTTTAG 57.425 37.500 0.00 0.00 0.00 1.85
3661 5753 8.780249 CAAGGCAGTAACTTTAGTTTAGCTAAA 58.220 33.333 14.96 14.96 44.71 1.85
3692 5784 6.764379 TGAATTTGAAATTAAGACCCCCAAC 58.236 36.000 2.71 0.00 0.00 3.77
3714 5806 2.107552 CCCAGTCTCCTGTTGGGTTTTA 59.892 50.000 0.56 0.00 45.31 1.52
3768 5863 3.628032 TCCAGTAACAAAATGTTGACGCA 59.372 39.130 1.62 0.00 41.30 5.24
3888 5995 9.646427 TTGTTTACAAACTTTTGCTTGTTCTAT 57.354 25.926 6.41 0.00 41.79 1.98
3889 5996 9.296400 TGTTTACAAACTTTTGCTTGTTCTATC 57.704 29.630 6.41 0.00 41.79 2.08
3890 5997 9.516314 GTTTACAAACTTTTGCTTGTTCTATCT 57.484 29.630 1.49 0.00 41.79 1.98
4057 6164 5.927689 TGAAATCCATTCTGTTGTGAATTGC 59.072 36.000 0.00 0.00 38.92 3.56
4058 6165 5.733620 AATCCATTCTGTTGTGAATTGCT 57.266 34.783 0.00 0.00 34.77 3.91
4103 6210 9.810545 GATCAGTTAGCATCTAAGAAACTTAGT 57.189 33.333 15.16 4.12 0.00 2.24
4143 6250 1.160329 CGGGCCATTACTAGCTGCAC 61.160 60.000 4.39 0.00 0.00 4.57
4155 6262 3.846180 CTGCACAGCCACACCTTT 58.154 55.556 0.00 0.00 0.00 3.11
4156 6263 2.118132 CTGCACAGCCACACCTTTT 58.882 52.632 0.00 0.00 0.00 2.27
4194 6305 8.196771 TGTGAATCTTCATTAATTGTATTGCCC 58.803 33.333 0.00 0.00 39.73 5.36
4232 6343 3.242870 CCAAGTTCGAGGCTATGCATTTC 60.243 47.826 3.54 0.00 0.00 2.17
4239 6352 3.416156 GAGGCTATGCATTTCTAAGGGG 58.584 50.000 3.54 0.00 0.00 4.79
4271 6384 4.880886 TTTTGTCATATCTCACATGCGG 57.119 40.909 0.00 0.00 0.00 5.69
4290 6403 4.649674 TGCGGAATTTAGGTAGATCTGTCT 59.350 41.667 5.18 5.22 38.52 3.41
4291 6404 4.985409 GCGGAATTTAGGTAGATCTGTCTG 59.015 45.833 5.18 0.00 35.87 3.51
4334 6447 6.486657 CCTCAAGAATAAGTTTGACTGGTTCA 59.513 38.462 7.82 0.00 29.84 3.18
4464 6579 3.452627 AGCATATTCTTCCGTTCTGGTCT 59.547 43.478 0.00 0.00 39.52 3.85
4497 6612 8.663025 CGGAAATTACTTAGAGTTAAACTTCCC 58.337 37.037 0.00 0.00 0.00 3.97
4530 6645 2.637872 ACACTTAGGTGCTAAAGCCTCA 59.362 45.455 4.65 0.00 46.57 3.86
4863 6981 1.984297 GGACTCGTCTTAGCACGTTTC 59.016 52.381 0.00 3.34 40.79 2.78
4974 7092 7.147672 TGTCACATTTGCTAAGATCTCCATCTA 60.148 37.037 0.00 0.00 38.55 1.98
4989 7107 7.482169 TCTCCATCTAGTGAACTTGTTGTAT 57.518 36.000 0.00 0.00 0.00 2.29
5037 7196 0.179086 GGAGCTTAGCCTCTCAGTGC 60.179 60.000 0.00 0.00 32.43 4.40
5088 7388 3.493350 GGCGCTCCAGATCAAAGAATCTA 60.493 47.826 7.64 0.00 34.21 1.98
5180 7480 2.364002 ACTAAGCACCAAATGGCGTTTT 59.636 40.909 0.99 0.00 39.32 2.43
5218 7518 4.283212 GGAAACAAATTGGTCTCCATGGAA 59.717 41.667 17.00 0.00 31.53 3.53
5278 7578 4.782019 TCCATAATGCTGTTTTCACCAC 57.218 40.909 0.00 0.00 0.00 4.16
5290 7591 6.680874 TGTTTTCACCACAAACGTACTAAT 57.319 33.333 0.00 0.00 37.00 1.73
5318 7619 1.106351 ATTCAAACACCCACAGCGCA 61.106 50.000 11.47 0.00 0.00 6.09
5384 7688 2.687935 AGTGCCATGAAAGTTGTTCGTT 59.312 40.909 0.00 0.00 0.00 3.85
5388 7692 4.096532 TGCCATGAAAGTTGTTCGTTGTAA 59.903 37.500 0.00 0.00 0.00 2.41
5563 7867 0.707616 TGGGTTTATGGTCCCTTGGG 59.292 55.000 0.00 0.00 43.74 4.12
5570 7874 1.455822 ATGGTCCCTTGGGTGAGAAA 58.544 50.000 5.51 0.00 0.00 2.52
5660 7970 6.183360 TGGTAAATTTTGTGAGAAGGTGCATT 60.183 34.615 0.00 0.00 0.00 3.56
5727 8037 3.454371 ACGGACATACAGATAACCTGC 57.546 47.619 0.00 0.00 46.81 4.85
5802 8112 2.268076 CCAAACCGGACCTGGCAAG 61.268 63.158 9.46 0.00 36.56 4.01
5822 8132 2.420466 CTTGGCCCAAACGTCCAAGC 62.420 60.000 17.11 6.12 46.85 4.01
5823 8133 3.680786 GGCCCAAACGTCCAAGCC 61.681 66.667 0.00 4.17 0.00 4.35
5939 8263 1.831652 CTTGAAGACGTCCCTGGCCT 61.832 60.000 13.01 0.00 0.00 5.19
5974 8300 0.608640 TCCTCTTTTCTGCCTCGTCC 59.391 55.000 0.00 0.00 0.00 4.79
5980 8306 2.652382 TTTCTGCCTCGTCCGCACAA 62.652 55.000 0.00 0.00 31.61 3.33
5982 8308 4.980805 TGCCTCGTCCGCACAACC 62.981 66.667 0.00 0.00 0.00 3.77
5983 8309 4.980805 GCCTCGTCCGCACAACCA 62.981 66.667 0.00 0.00 0.00 3.67
5984 8310 2.047274 CCTCGTCCGCACAACCAT 60.047 61.111 0.00 0.00 0.00 3.55
5991 8317 0.251121 TCCGCACAACCATCACCATT 60.251 50.000 0.00 0.00 0.00 3.16
6001 8327 1.167851 CATCACCATTGTTGCTCCGT 58.832 50.000 0.00 0.00 0.00 4.69
6002 8328 1.135603 CATCACCATTGTTGCTCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
6029 8383 1.172180 CCAACCCACAACATCGCTGT 61.172 55.000 0.00 0.00 37.12 4.40
6030 8384 0.667993 CAACCCACAACATCGCTGTT 59.332 50.000 0.00 0.00 46.54 3.16
6032 8386 0.179032 ACCCACAACATCGCTGTTCA 60.179 50.000 0.78 0.00 43.76 3.18
6035 8389 1.536766 CCACAACATCGCTGTTCATGT 59.463 47.619 0.78 0.00 43.76 3.21
6042 8396 2.029288 CGCTGTTCATGTCGCCAGT 61.029 57.895 0.00 0.00 0.00 4.00
6056 8410 1.166531 GCCAGTGGACAAGTTCGCTT 61.167 55.000 15.20 0.00 38.09 4.68
6095 8480 6.183360 CCTCGTGCTCTGTATTTGATGAAATT 60.183 38.462 0.00 0.00 33.63 1.82
6162 8552 4.957266 TCGTCGTCGAATGCTGTT 57.043 50.000 1.37 0.00 43.34 3.16
6424 8852 2.524300 TTTTTCCGAGTCGCTTCCG 58.476 52.632 7.12 0.00 0.00 4.30
6425 8853 0.947180 TTTTTCCGAGTCGCTTCCGG 60.947 55.000 7.12 0.00 44.22 5.14
6427 8855 2.439701 TCCGAGTCGCTTCCGGAT 60.440 61.111 4.15 0.00 46.17 4.18
6428 8856 2.278857 CCGAGTCGCTTCCGGATG 60.279 66.667 4.15 9.44 45.58 3.51
6429 8857 2.771639 CCGAGTCGCTTCCGGATGA 61.772 63.158 20.87 9.36 45.58 2.92
6430 8858 1.298713 CGAGTCGCTTCCGGATGAG 60.299 63.158 20.87 17.29 34.56 2.90
6431 8859 1.590259 GAGTCGCTTCCGGATGAGC 60.590 63.158 20.87 18.74 34.56 4.26
6432 8860 2.184322 GTCGCTTCCGGATGAGCA 59.816 61.111 24.23 11.29 34.56 4.26
6433 8861 1.880340 GTCGCTTCCGGATGAGCAG 60.880 63.158 24.23 17.36 34.56 4.24
6434 8862 2.052104 TCGCTTCCGGATGAGCAGA 61.052 57.895 24.23 18.97 34.56 4.26
6435 8863 1.591059 CGCTTCCGGATGAGCAGAG 60.591 63.158 24.23 10.40 0.00 3.35
6436 8864 1.819229 GCTTCCGGATGAGCAGAGA 59.181 57.895 20.88 0.00 0.00 3.10
6437 8865 0.392336 GCTTCCGGATGAGCAGAGAT 59.608 55.000 20.88 0.00 0.00 2.75
6438 8866 1.202627 GCTTCCGGATGAGCAGAGATT 60.203 52.381 20.88 0.00 0.00 2.40
6439 8867 2.744494 GCTTCCGGATGAGCAGAGATTT 60.744 50.000 20.88 0.00 0.00 2.17
6440 8868 2.609427 TCCGGATGAGCAGAGATTTG 57.391 50.000 0.00 0.00 0.00 2.32
6441 8869 1.833630 TCCGGATGAGCAGAGATTTGT 59.166 47.619 0.00 0.00 0.00 2.83
6442 8870 2.237143 TCCGGATGAGCAGAGATTTGTT 59.763 45.455 0.00 0.00 0.00 2.83
6443 8871 2.611292 CCGGATGAGCAGAGATTTGTTC 59.389 50.000 0.00 0.00 0.00 3.18
6444 8872 3.529533 CGGATGAGCAGAGATTTGTTCT 58.470 45.455 0.00 0.00 37.41 3.01
6445 8873 3.937706 CGGATGAGCAGAGATTTGTTCTT 59.062 43.478 0.00 0.00 33.74 2.52
6446 8874 4.201792 CGGATGAGCAGAGATTTGTTCTTG 60.202 45.833 0.00 0.00 33.74 3.02
6447 8875 4.438472 GGATGAGCAGAGATTTGTTCTTGC 60.438 45.833 0.00 0.00 38.08 4.01
6448 8876 3.479489 TGAGCAGAGATTTGTTCTTGCA 58.521 40.909 10.28 0.00 39.19 4.08
6449 8877 4.077108 TGAGCAGAGATTTGTTCTTGCAT 58.923 39.130 0.00 0.00 39.19 3.96
6450 8878 4.082949 TGAGCAGAGATTTGTTCTTGCATG 60.083 41.667 0.00 0.00 39.19 4.06
6481 8909 0.177604 GTGGAGGAGGCTGATGACAG 59.822 60.000 0.00 0.00 45.91 3.51
6563 8995 3.036819 ACTGCTCTCAGGATGCTTATCA 58.963 45.455 0.00 0.00 44.54 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.224523 TGGTTGTGATGGGTCTCACTTC 60.225 50.000 5.87 0.02 44.73 3.01
11 12 1.202806 AGAGTGTGTGGTTGTGATGGG 60.203 52.381 0.00 0.00 0.00 4.00
24 25 1.792301 CGGCTTGATGCAGAGTGTG 59.208 57.895 0.00 0.00 45.15 3.82
27 28 1.744368 CAGCGGCTTGATGCAGAGT 60.744 57.895 0.00 0.00 45.15 3.24
43 44 4.260497 CGTTGAGATGCAATACATGGACAG 60.260 45.833 0.00 0.00 39.84 3.51
48 49 2.600556 CGGCGTTGAGATGCAATACATG 60.601 50.000 0.00 0.00 39.84 3.21
51 52 1.286501 TCGGCGTTGAGATGCAATAC 58.713 50.000 6.85 0.00 39.63 1.89
68 69 4.215399 TCACTTTGGCCAGTTTTATCTTCG 59.785 41.667 5.11 0.00 0.00 3.79
73 74 4.729868 ACTCTCACTTTGGCCAGTTTTAT 58.270 39.130 5.11 0.00 0.00 1.40
74 75 4.164843 ACTCTCACTTTGGCCAGTTTTA 57.835 40.909 5.11 0.00 0.00 1.52
149 850 5.835113 ATGGTGAATAAAATTCCCTGTCG 57.165 39.130 0.00 0.00 0.00 4.35
150 851 6.935167 ACAATGGTGAATAAAATTCCCTGTC 58.065 36.000 0.00 0.00 0.00 3.51
163 864 6.507900 CGAGTCTACATCTACAATGGTGAAT 58.492 40.000 0.00 0.00 0.00 2.57
185 888 2.278336 CGGAGCCGAATAACGCGA 60.278 61.111 15.93 0.00 42.83 5.87
195 898 1.086696 ACAAATGATTCACGGAGCCG 58.913 50.000 7.48 7.48 46.03 5.52
201 904 6.020599 CGTCTCCTACTTACAAATGATTCACG 60.021 42.308 0.00 0.00 0.00 4.35
203 906 6.338146 CCGTCTCCTACTTACAAATGATTCA 58.662 40.000 0.00 0.00 0.00 2.57
222 925 2.375509 ACCAATTTCTTTCTCCCCGTCT 59.624 45.455 0.00 0.00 0.00 4.18
228 931 6.887002 ACTAAGGATGACCAATTTCTTTCTCC 59.113 38.462 0.00 0.00 38.94 3.71
241 944 5.934402 TTCCTACTCAACTAAGGATGACC 57.066 43.478 0.00 0.00 39.14 4.02
243 946 8.602424 TGAAATTTCCTACTCAACTAAGGATGA 58.398 33.333 15.48 0.00 39.14 2.92
268 971 7.064253 CCAAGAACCGGTTTCTAATAACTAGTG 59.936 40.741 23.22 10.72 44.41 2.74
269 972 7.038799 TCCAAGAACCGGTTTCTAATAACTAGT 60.039 37.037 23.22 0.00 44.41 2.57
270 973 7.325694 TCCAAGAACCGGTTTCTAATAACTAG 58.674 38.462 23.22 6.65 44.41 2.57
271 974 7.243604 TCCAAGAACCGGTTTCTAATAACTA 57.756 36.000 23.22 0.00 44.41 2.24
306 1009 9.919348 GTTTCTACGATTGTACTGTGTTAAAAA 57.081 29.630 0.00 0.00 0.00 1.94
309 1012 7.705752 TGTGTTTCTACGATTGTACTGTGTTAA 59.294 33.333 0.00 0.00 0.00 2.01
326 1029 7.221259 GTGTATGTGCGTGTATATGTGTTTCTA 59.779 37.037 0.00 0.00 0.00 2.10
330 1033 5.416083 AGTGTATGTGCGTGTATATGTGTT 58.584 37.500 0.00 0.00 0.00 3.32
331 1034 5.006153 AGTGTATGTGCGTGTATATGTGT 57.994 39.130 0.00 0.00 0.00 3.72
333 1036 5.257082 TGAGTGTATGTGCGTGTATATGT 57.743 39.130 0.00 0.00 0.00 2.29
335 1038 5.470368 GGATGAGTGTATGTGCGTGTATAT 58.530 41.667 0.00 0.00 0.00 0.86
336 1039 4.261867 GGGATGAGTGTATGTGCGTGTATA 60.262 45.833 0.00 0.00 0.00 1.47
341 1044 0.178068 GGGGATGAGTGTATGTGCGT 59.822 55.000 0.00 0.00 0.00 5.24
358 1061 2.967599 TCTCAAGATGTGATGTCGGG 57.032 50.000 0.00 0.00 35.07 5.14
360 1063 4.027050 CGTCAATCTCAAGATGTGATGTCG 60.027 45.833 0.00 0.00 35.07 4.35
362 1065 5.077134 TCGTCAATCTCAAGATGTGATGT 57.923 39.130 15.83 0.00 35.07 3.06
369 1072 6.878923 TGTGGTAATTTCGTCAATCTCAAGAT 59.121 34.615 0.00 0.00 36.07 2.40
386 1089 2.426024 ACTACGAGACGCATGTGGTAAT 59.574 45.455 11.65 0.00 0.00 1.89
388 1091 1.399440 GACTACGAGACGCATGTGGTA 59.601 52.381 11.65 2.31 0.00 3.25
409 1112 8.817768 GTTCAGTTGAAGGAGACGTTTTCGTG 62.818 46.154 0.00 0.00 45.03 4.35
438 1141 9.466497 AGATTTATTTCAGTCTTTCCAGCAATA 57.534 29.630 0.00 0.00 0.00 1.90
441 1144 8.321353 TCTAGATTTATTTCAGTCTTTCCAGCA 58.679 33.333 0.00 0.00 0.00 4.41
481 1184 0.528249 AAGTTTTGCGCTTGCCACTG 60.528 50.000 9.73 0.00 38.03 3.66
491 1194 1.396996 CACCGGGATCTAAGTTTTGCG 59.603 52.381 6.32 0.00 0.00 4.85
492 1195 1.743394 CCACCGGGATCTAAGTTTTGC 59.257 52.381 6.32 0.00 35.59 3.68
543 1248 6.283694 TCGAATTGATACATCAGCTAGCTTT 58.716 36.000 16.46 2.29 38.19 3.51
594 1299 0.455633 GAAGCTGGAGTGCAAATGCG 60.456 55.000 0.35 0.00 45.83 4.73
595 1300 0.886563 AGAAGCTGGAGTGCAAATGC 59.113 50.000 0.00 0.00 42.50 3.56
659 2414 4.560136 TCGTAAGCATTTGCAGAACAAA 57.440 36.364 5.20 0.00 45.27 2.83
706 2461 4.696455 AGAAAAGTCCCAGCAAATGTTTG 58.304 39.130 1.19 1.19 41.03 2.93
707 2462 6.478512 TTAGAAAAGTCCCAGCAAATGTTT 57.521 33.333 0.00 0.00 0.00 2.83
747 2513 1.145803 GTTCAGGTTCGTGCAGGTAC 58.854 55.000 6.26 6.96 0.00 3.34
806 2578 0.179094 ACTCCGCACGTTTGAGTTGA 60.179 50.000 5.74 0.00 35.93 3.18
931 2703 1.727511 CTGAGAGGAGGAGCAGAGCG 61.728 65.000 0.00 0.00 0.00 5.03
936 2708 2.364842 GCCCTGAGAGGAGGAGCA 60.365 66.667 0.00 0.00 37.67 4.26
1218 3006 4.265056 AACCTGGGACGGTGGTGC 62.265 66.667 0.00 0.00 35.63 5.01
1319 3107 3.454371 TCTAAACCTCTAATGGCGAGC 57.546 47.619 0.00 0.00 0.00 5.03
1332 3120 6.288426 GAACAGAGAACAGTGTTCTAAACC 57.712 41.667 33.05 22.14 46.04 3.27
1339 3127 4.769688 TGACATGAACAGAGAACAGTGTT 58.230 39.130 8.61 8.61 39.62 3.32
1352 3140 2.210116 ACGGTTGTCACTGACATGAAC 58.790 47.619 12.71 8.12 42.40 3.18
1380 3168 4.035675 GGCACCAGCTTAGTCATAATTCAC 59.964 45.833 0.00 0.00 41.70 3.18
1385 3182 3.107601 AGAGGCACCAGCTTAGTCATAA 58.892 45.455 0.00 0.00 41.70 1.90
1386 3183 2.432146 CAGAGGCACCAGCTTAGTCATA 59.568 50.000 0.00 0.00 41.70 2.15
1387 3184 1.209019 CAGAGGCACCAGCTTAGTCAT 59.791 52.381 0.00 0.00 41.70 3.06
1388 3185 0.610174 CAGAGGCACCAGCTTAGTCA 59.390 55.000 0.00 0.00 41.70 3.41
1389 3186 0.898320 TCAGAGGCACCAGCTTAGTC 59.102 55.000 0.00 0.00 41.70 2.59
1390 3187 1.352083 TTCAGAGGCACCAGCTTAGT 58.648 50.000 0.00 0.00 41.70 2.24
1391 3188 2.706339 ATTCAGAGGCACCAGCTTAG 57.294 50.000 0.00 0.00 41.70 2.18
1392 3189 3.347216 GAAATTCAGAGGCACCAGCTTA 58.653 45.455 0.00 0.00 41.70 3.09
1393 3190 2.165998 GAAATTCAGAGGCACCAGCTT 58.834 47.619 0.00 0.00 41.70 3.74
1415 3212 1.280421 AGAAGAATGCTCCACCAGGAC 59.720 52.381 0.00 0.00 39.61 3.85
1427 3224 3.187227 CACAGGTGAAACGGAGAAGAATG 59.813 47.826 0.00 0.00 38.12 2.67
1465 3262 1.425066 ACCCTGCCAATCAGAAAGTCA 59.575 47.619 0.00 0.00 45.72 3.41
1471 3268 1.428912 AGGAAAACCCTGCCAATCAGA 59.571 47.619 0.00 0.00 45.61 3.27
1485 3282 1.001633 GGAGTGACGCTACCAGGAAAA 59.998 52.381 0.00 0.00 0.00 2.29
1555 3352 5.996669 ACAGTAACTGTAAAAACGAAGGG 57.003 39.130 0.00 0.00 43.46 3.95
1560 3357 6.505732 GCTTGCAAACAGTAACTGTAAAAACG 60.506 38.462 0.00 0.00 44.62 3.60
1561 3358 6.530181 AGCTTGCAAACAGTAACTGTAAAAAC 59.470 34.615 0.00 0.00 44.62 2.43
1572 3369 3.020274 TCCAACAAGCTTGCAAACAGTA 58.980 40.909 26.27 1.36 0.00 2.74
1597 3394 5.998363 AGAACTAAAGACCAAGGTAGCTTTG 59.002 40.000 3.96 4.17 33.16 2.77
1601 3398 4.930405 GTCAGAACTAAAGACCAAGGTAGC 59.070 45.833 0.00 0.00 0.00 3.58
1605 3402 2.737252 GCGTCAGAACTAAAGACCAAGG 59.263 50.000 0.00 0.00 0.00 3.61
1615 3412 3.069586 CCATGGATAAGGCGTCAGAACTA 59.930 47.826 5.56 0.00 0.00 2.24
1705 3506 2.624838 AGCAAAGATGAACAACCACTGG 59.375 45.455 0.00 0.00 0.00 4.00
1707 3508 4.160252 ACAAAGCAAAGATGAACAACCACT 59.840 37.500 0.00 0.00 0.00 4.00
1825 3626 3.508845 AAAGTGGCACCTATGACTGTT 57.491 42.857 15.27 0.00 33.48 3.16
1853 3654 3.893753 TGGAGATTGGTGGAGGAAAAA 57.106 42.857 0.00 0.00 0.00 1.94
1854 3655 5.732331 ATATGGAGATTGGTGGAGGAAAA 57.268 39.130 0.00 0.00 0.00 2.29
1880 3681 1.804326 GCTCAGGCATTTGCGCAAG 60.804 57.895 23.68 13.97 43.26 4.01
1881 3682 1.808531 AAGCTCAGGCATTTGCGCAA 61.809 50.000 21.02 21.02 43.26 4.85
1882 3683 2.270257 AAGCTCAGGCATTTGCGCA 61.270 52.632 5.66 5.66 43.26 6.09
1883 3684 1.804326 CAAGCTCAGGCATTTGCGC 60.804 57.895 0.00 0.00 43.26 6.09
1884 3685 1.804326 GCAAGCTCAGGCATTTGCG 60.804 57.895 0.00 0.00 38.92 4.85
1885 3686 1.012486 GTGCAAGCTCAGGCATTTGC 61.012 55.000 10.35 3.60 44.54 3.68
1886 3687 0.601558 AGTGCAAGCTCAGGCATTTG 59.398 50.000 10.35 0.00 42.75 2.32
1887 3688 0.886563 GAGTGCAAGCTCAGGCATTT 59.113 50.000 10.35 3.57 42.75 2.32
1906 3713 3.550437 ATGTGCTAGCACCTAGGAAAG 57.450 47.619 37.90 7.85 45.63 2.62
1916 3723 8.141909 AGATAATTCGTAAGTTATGTGCTAGCA 58.858 33.333 14.93 14.93 39.48 3.49
1917 3724 8.522178 AGATAATTCGTAAGTTATGTGCTAGC 57.478 34.615 8.10 8.10 39.48 3.42
1918 3725 9.678941 TGAGATAATTCGTAAGTTATGTGCTAG 57.321 33.333 2.08 0.00 39.48 3.42
1920 3727 8.982685 CATGAGATAATTCGTAAGTTATGTGCT 58.017 33.333 2.08 0.00 39.48 4.40
1921 3728 8.978539 TCATGAGATAATTCGTAAGTTATGTGC 58.021 33.333 0.00 0.00 39.48 4.57
1924 3731 9.995379 CGTTCATGAGATAATTCGTAAGTTATG 57.005 33.333 0.00 0.00 39.48 1.90
1984 3823 9.046296 GGGCATATCGATCCAAAATAATAGTAG 57.954 37.037 0.00 0.00 0.00 2.57
1985 3824 7.990886 GGGGCATATCGATCCAAAATAATAGTA 59.009 37.037 0.00 0.00 0.00 1.82
1986 3825 6.828785 GGGGCATATCGATCCAAAATAATAGT 59.171 38.462 0.00 0.00 0.00 2.12
1987 3826 7.056635 AGGGGCATATCGATCCAAAATAATAG 58.943 38.462 0.00 0.00 0.00 1.73
1988 3827 6.969043 AGGGGCATATCGATCCAAAATAATA 58.031 36.000 0.00 0.00 0.00 0.98
2013 3852 0.179009 ATCACACAGCAACAGCCACT 60.179 50.000 0.00 0.00 0.00 4.00
2049 3888 2.503356 AGGTTGTTGGCCAATCAAAACA 59.497 40.909 23.66 11.93 36.57 2.83
2050 3889 3.192541 AGGTTGTTGGCCAATCAAAAC 57.807 42.857 23.66 21.18 36.57 2.43
2081 3931 2.494471 TCATGCAATTGAGAAAGGCCTG 59.506 45.455 5.69 0.00 0.00 4.85
2113 3963 2.239402 TGCTGAGTTTATGGCCAGATCA 59.761 45.455 13.05 6.80 0.00 2.92
2117 3967 0.737219 GCTGCTGAGTTTATGGCCAG 59.263 55.000 13.05 0.00 0.00 4.85
2153 4004 7.470192 ACCCAATAAAAGGAGAGAATTGAGAA 58.530 34.615 0.00 0.00 30.77 2.87
2365 4217 5.046910 ACAAATTATCTCAGCAAACCACG 57.953 39.130 0.00 0.00 0.00 4.94
2366 4218 6.146021 CCAAACAAATTATCTCAGCAAACCAC 59.854 38.462 0.00 0.00 0.00 4.16
2398 4250 6.806739 TGAATACAGAGTACAGACAAATGACG 59.193 38.462 0.00 0.00 0.00 4.35
2430 4282 4.649218 TCCCTGGTGGAAAAGAAAGAAAAG 59.351 41.667 0.00 0.00 41.40 2.27
2474 4327 2.621055 TGCAACTAGACGCCACATTTTT 59.379 40.909 0.00 0.00 0.00 1.94
2549 4402 2.909662 AGAGGGAGGGAAGAAACAGAAG 59.090 50.000 0.00 0.00 0.00 2.85
2572 4425 6.347240 GGCTATATGACGCAAGAAGAGAAATG 60.347 42.308 0.00 0.00 43.62 2.32
2577 4430 3.982475 TGGCTATATGACGCAAGAAGAG 58.018 45.455 0.00 0.00 43.62 2.85
2580 4433 4.137116 ACTTGGCTATATGACGCAAGAA 57.863 40.909 0.00 0.00 43.62 2.52
2586 4439 4.750098 CCAACCTAACTTGGCTATATGACG 59.250 45.833 0.00 0.00 34.50 4.35
2628 4481 5.778241 TGAGGGATAAGAACAGTAAGTCACA 59.222 40.000 0.00 0.00 0.00 3.58
2629 4482 6.282199 TGAGGGATAAGAACAGTAAGTCAC 57.718 41.667 0.00 0.00 0.00 3.67
2667 4520 9.831737 CAGTTCAAAATGATAGTAGAAACCTTG 57.168 33.333 0.00 0.00 0.00 3.61
2668 4521 9.574516 ACAGTTCAAAATGATAGTAGAAACCTT 57.425 29.630 0.00 0.00 0.00 3.50
2684 4537 5.465390 CGTCCTACTCATTCACAGTTCAAAA 59.535 40.000 0.00 0.00 0.00 2.44
2695 4548 9.583765 AAAGAGTTAAATACGTCCTACTCATTC 57.416 33.333 14.50 0.00 35.61 2.67
2752 4605 5.124297 CAGGAACATGTAGCACATTGAATCA 59.876 40.000 0.00 0.00 36.53 2.57
2757 4610 5.048504 AGTTTCAGGAACATGTAGCACATTG 60.049 40.000 0.00 0.00 36.53 2.82
2758 4611 5.072741 AGTTTCAGGAACATGTAGCACATT 58.927 37.500 0.00 0.00 36.53 2.71
2762 4615 5.222079 TGTAGTTTCAGGAACATGTAGCA 57.778 39.130 0.00 0.00 40.84 3.49
2765 4618 8.590204 TGTAAGATGTAGTTTCAGGAACATGTA 58.410 33.333 0.00 0.00 40.84 2.29
2768 4621 8.321353 TCATGTAAGATGTAGTTTCAGGAACAT 58.679 33.333 0.00 0.00 40.84 2.71
2780 4633 5.431765 ACCCAGCTTTCATGTAAGATGTAG 58.568 41.667 23.25 17.76 39.31 2.74
2797 4650 2.000447 GTGTTCTTCGTATGACCCAGC 59.000 52.381 0.00 0.00 0.00 4.85
2809 4662 8.547967 TCATGTGTATAGGAAAAGTGTTCTTC 57.452 34.615 0.00 0.00 32.90 2.87
2837 4690 7.632721 ACAACAACAAAACGGTGTTACTATAG 58.367 34.615 0.00 0.00 39.73 1.31
2930 4783 2.373335 ATGACCGAGATAGACTGCCT 57.627 50.000 0.00 0.00 0.00 4.75
3033 4887 3.667497 ACACCGGCTATACATCATGAG 57.333 47.619 0.00 0.00 0.00 2.90
3038 4892 1.226746 GGCAACACCGGCTATACATC 58.773 55.000 0.00 0.00 0.00 3.06
3048 4902 3.357079 GCTCCACTGGCAACACCG 61.357 66.667 0.00 0.00 46.17 4.94
3072 4926 2.362169 AATGTTGTGTTAATGCCGCC 57.638 45.000 0.00 0.00 0.00 6.13
3075 4929 4.511082 AGTGCAAAATGTTGTGTTAATGCC 59.489 37.500 0.00 0.00 37.06 4.40
3197 5051 4.513406 AAGTTGGGTGTGTTCCTTTAGA 57.487 40.909 0.00 0.00 0.00 2.10
3209 5063 1.341209 GCCTTCCTGAAAAGTTGGGTG 59.659 52.381 0.00 0.00 0.00 4.61
3226 5080 1.845205 AAGTGTCTCCTGGCTGCCT 60.845 57.895 21.03 0.00 0.00 4.75
3235 5089 2.880890 AGACATTGTTGCAAGTGTCTCC 59.119 45.455 25.07 10.48 45.93 3.71
3256 5110 0.550914 GCATACCCAGTCCCATTCCA 59.449 55.000 0.00 0.00 0.00 3.53
3382 5238 7.326063 GTCCTCTTTTGAAAACAATGTAATCGG 59.674 37.037 0.00 0.00 0.00 4.18
3400 5256 9.838339 AGATGTTTCGATTATAATGTCCTCTTT 57.162 29.630 1.78 0.00 0.00 2.52
3443 5302 2.171659 TGACAGGAACAGTAAGGCAACA 59.828 45.455 0.00 0.00 41.41 3.33
3482 5342 1.480498 GCCTTTCTTCCTTTCACCCCA 60.480 52.381 0.00 0.00 0.00 4.96
3490 5350 2.470057 TTTGGGTGCCTTTCTTCCTT 57.530 45.000 0.00 0.00 0.00 3.36
3500 5360 1.995376 TTCCTCTTCTTTTGGGTGCC 58.005 50.000 0.00 0.00 0.00 5.01
3514 5599 7.554476 ACTTTAGTTTCCATCTGCTAATTCCTC 59.446 37.037 0.00 0.00 0.00 3.71
3515 5600 7.406104 ACTTTAGTTTCCATCTGCTAATTCCT 58.594 34.615 0.00 0.00 0.00 3.36
3522 5607 9.959721 TTTCTATTACTTTAGTTTCCATCTGCT 57.040 29.630 0.00 0.00 0.00 4.24
3595 5687 3.164268 TCAAATTGACAGGACCCAATGG 58.836 45.455 0.00 0.00 33.70 3.16
3617 5709 6.600388 TGCCTTGTTTGGATATCTTGCTATA 58.400 36.000 2.05 0.00 0.00 1.31
3685 5777 3.339093 GGAGACTGGGGTTGGGGG 61.339 72.222 0.00 0.00 0.00 5.40
3714 5806 5.255397 TGACAATAAATTCTGGTGGGACT 57.745 39.130 0.00 0.00 0.00 3.85
3765 5860 8.997621 AGTGGGTAATGTATTATACTATTGCG 57.002 34.615 3.92 0.00 0.00 4.85
3781 5880 6.662663 ACGAGTCTAAGTAGAAAGTGGGTAAT 59.337 38.462 0.00 0.00 33.47 1.89
3834 5941 3.247648 GCGTTCAAAACTCAGTTCTGCTA 59.752 43.478 0.00 0.00 0.00 3.49
3835 5942 2.032178 GCGTTCAAAACTCAGTTCTGCT 59.968 45.455 0.00 0.00 0.00 4.24
3836 5943 2.223249 TGCGTTCAAAACTCAGTTCTGC 60.223 45.455 0.00 0.00 0.00 4.26
3847 5954 5.700846 TGTAAACAAGAAGTGCGTTCAAAA 58.299 33.333 1.83 0.00 37.67 2.44
3888 5995 6.822667 ATTTGCTGAATTGACACACATAGA 57.177 33.333 0.00 0.00 0.00 1.98
3889 5996 8.022550 TGTAATTTGCTGAATTGACACACATAG 58.977 33.333 8.33 0.00 38.40 2.23
3890 5997 7.880105 TGTAATTTGCTGAATTGACACACATA 58.120 30.769 8.33 0.00 38.40 2.29
3891 5998 6.747125 TGTAATTTGCTGAATTGACACACAT 58.253 32.000 8.33 0.00 38.40 3.21
4057 6164 3.937814 TCCTGCATGGTTACAGTAACAG 58.062 45.455 22.34 13.49 40.39 3.16
4058 6165 4.019771 TGATCCTGCATGGTTACAGTAACA 60.020 41.667 22.34 10.83 40.39 2.41
4103 6210 3.224269 GCTAACCACAAACTTAACCCCA 58.776 45.455 0.00 0.00 0.00 4.96
4159 6270 9.491675 AATTAATGAAGATTCACAACATGCAAA 57.508 25.926 0.00 0.00 40.49 3.68
4178 6289 8.149647 ACACCATATTGGGCAATACAATTAATG 58.850 33.333 0.00 0.00 43.37 1.90
4179 6290 8.149647 CACACCATATTGGGCAATACAATTAAT 58.850 33.333 0.00 0.00 43.37 1.40
4194 6305 5.452078 AACTTGGAACACACACCATATTG 57.548 39.130 0.00 0.00 39.29 1.90
4232 6343 7.610865 TGACAAAATAAAGAAATGCCCCTTAG 58.389 34.615 0.00 0.00 0.00 2.18
4265 6378 5.300752 ACAGATCTACCTAAATTCCGCATG 58.699 41.667 0.00 0.00 0.00 4.06
4271 6384 5.755861 GCCACAGACAGATCTACCTAAATTC 59.244 44.000 0.00 0.00 32.25 2.17
4325 6438 5.098211 GCAGCTTCATAAAATGAACCAGTC 58.902 41.667 0.00 0.00 43.84 3.51
4354 6468 8.533657 TCAAATAATGGAACTTCTTGCATCAAT 58.466 29.630 0.00 0.00 37.45 2.57
4464 6579 4.404715 ACTCTAAGTAATTTCCGCCAGCTA 59.595 41.667 0.00 0.00 0.00 3.32
4497 6612 3.935203 CACCTAAGTGTACAAGCTCATGG 59.065 47.826 0.00 0.00 39.30 3.66
4863 6981 4.082949 TGACAAGATTTGCTCTTCTGCATG 60.083 41.667 0.00 0.00 42.48 4.06
4974 7092 4.532834 ACCAACCATACAACAAGTTCACT 58.467 39.130 0.00 0.00 0.00 3.41
4989 7107 6.379133 CCAGTGAAGTACTACTATACCAACCA 59.621 42.308 0.00 0.00 37.60 3.67
5067 7367 2.559440 AGATTCTTTGATCTGGAGCGC 58.441 47.619 0.00 0.00 35.13 5.92
5088 7388 9.929180 AATACTGTATGCACGATTATCAGTAAT 57.071 29.630 0.22 0.00 39.30 1.89
5135 7435 7.785506 AGTTAAAGCACAGAGAGGGTATAGTAT 59.214 37.037 0.00 0.00 0.00 2.12
5180 7480 6.973460 TTTGTTTCCCCGTATAAAAAGGAA 57.027 33.333 0.00 0.00 34.84 3.36
5290 7591 5.080337 TGTGGGTGTTTGAATAGCCAAATA 58.920 37.500 12.06 1.59 46.76 1.40
5318 7619 1.340405 CCTACAAACCTGCTCATGGCT 60.340 52.381 7.54 0.00 42.39 4.75
5334 7635 2.553247 GCCATTTAGAGCCCCATCCTAC 60.553 54.545 0.00 0.00 0.00 3.18
5369 7671 8.495949 CACTAGATTACAACGAACAACTTTCAT 58.504 33.333 0.00 0.00 0.00 2.57
5439 7743 2.921821 TGAACCATCATCACGCATCAT 58.078 42.857 0.00 0.00 0.00 2.45
5519 7823 2.890311 TGCCTTCCAAACAATCGAATGT 59.110 40.909 0.00 0.00 34.24 2.71
5563 7867 4.618920 TCCTCCTACTTGGTTTTCTCAC 57.381 45.455 0.00 0.00 37.07 3.51
5570 7874 3.008485 CAGCTCTTTCCTCCTACTTGGTT 59.992 47.826 0.00 0.00 37.07 3.67
5660 7970 1.067364 TCCGTTTACACAGCAGTTCGA 59.933 47.619 0.00 0.00 0.00 3.71
5727 8037 5.339177 GGATATGTAGATGCTCTGATGACG 58.661 45.833 0.00 0.00 0.00 4.35
5802 8112 2.494530 TTGGACGTTTGGGCCAAGC 61.495 57.895 21.78 21.78 36.80 4.01
5822 8132 1.046472 TGGGTATAGGTGCCAGTCGG 61.046 60.000 0.00 0.00 0.00 4.79
5823 8133 0.389391 CTGGGTATAGGTGCCAGTCG 59.611 60.000 0.00 0.00 0.00 4.18
5843 8156 4.782691 CCCCATATCCACCTCACATATGTA 59.217 45.833 8.32 0.00 31.18 2.29
5912 8225 3.578716 AGGGACGTCTTCAAGAGATTTGA 59.421 43.478 16.46 0.00 36.61 2.69
5939 8263 0.341258 AGGAGGAAGAGGGCAGATCA 59.659 55.000 0.00 0.00 0.00 2.92
5974 8300 0.597568 ACAATGGTGATGGTTGTGCG 59.402 50.000 0.00 0.00 34.98 5.34
5980 8306 1.549203 GGAGCAACAATGGTGATGGT 58.451 50.000 0.79 0.00 40.53 3.55
5982 8308 1.135603 CACGGAGCAACAATGGTGATG 60.136 52.381 0.79 0.00 37.41 3.07
5983 8309 1.167851 CACGGAGCAACAATGGTGAT 58.832 50.000 0.79 0.00 37.41 3.06
5984 8310 0.888736 CCACGGAGCAACAATGGTGA 60.889 55.000 0.79 0.00 37.41 4.02
5991 8317 1.525077 GGACAACCACGGAGCAACA 60.525 57.895 0.00 0.00 35.97 3.33
6029 8383 0.107643 TTGTCCACTGGCGACATGAA 59.892 50.000 0.00 0.00 39.86 2.57
6030 8384 0.320683 CTTGTCCACTGGCGACATGA 60.321 55.000 0.00 0.00 39.86 3.07
6032 8386 0.108585 AACTTGTCCACTGGCGACAT 59.891 50.000 0.00 0.00 39.86 3.06
6035 8389 1.300620 CGAACTTGTCCACTGGCGA 60.301 57.895 0.00 0.00 0.00 5.54
6042 8396 0.319555 CGAGGAAGCGAACTTGTCCA 60.320 55.000 0.00 0.00 35.82 4.02
6056 8410 0.034767 ACGAGGTGTATGTCCGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
6162 8552 5.835819 TCCATCAAGGTTTGTGTTTCCATAA 59.164 36.000 0.00 0.00 39.02 1.90
6183 8573 8.421002 TCGATGAACTCTTTGTATATGAATCCA 58.579 33.333 0.00 0.00 0.00 3.41
6225 8615 4.506758 TCATCATTTCAGCATCTTCGTCA 58.493 39.130 0.00 0.00 0.00 4.35
6351 8747 3.008375 AGTCATTGTAGAGAAGCCTTGCA 59.992 43.478 0.00 0.00 0.00 4.08
6421 8849 1.833630 ACAAATCTCTGCTCATCCGGA 59.166 47.619 6.61 6.61 0.00 5.14
6422 8850 2.322355 ACAAATCTCTGCTCATCCGG 57.678 50.000 0.00 0.00 0.00 5.14
6423 8851 3.529533 AGAACAAATCTCTGCTCATCCG 58.470 45.455 0.00 0.00 30.46 4.18
6424 8852 4.438472 GCAAGAACAAATCTCTGCTCATCC 60.438 45.833 0.00 0.00 37.42 3.51
6425 8853 4.155462 TGCAAGAACAAATCTCTGCTCATC 59.845 41.667 11.20 0.00 40.15 2.92
6426 8854 4.077108 TGCAAGAACAAATCTCTGCTCAT 58.923 39.130 11.20 0.00 40.15 2.90
6427 8855 3.479489 TGCAAGAACAAATCTCTGCTCA 58.521 40.909 11.20 0.00 40.15 4.26
6428 8856 4.082895 ACATGCAAGAACAAATCTCTGCTC 60.083 41.667 0.00 0.00 40.15 4.26
6429 8857 3.825014 ACATGCAAGAACAAATCTCTGCT 59.175 39.130 0.00 0.00 40.15 4.24
6430 8858 4.170292 ACATGCAAGAACAAATCTCTGC 57.830 40.909 0.00 0.00 40.03 4.26
6431 8859 6.148315 TCACTACATGCAAGAACAAATCTCTG 59.852 38.462 0.00 0.00 37.42 3.35
6432 8860 6.233434 TCACTACATGCAAGAACAAATCTCT 58.767 36.000 0.00 0.00 37.42 3.10
6433 8861 6.486253 TCACTACATGCAAGAACAAATCTC 57.514 37.500 0.00 0.00 37.42 2.75
6434 8862 6.882610 TTCACTACATGCAAGAACAAATCT 57.117 33.333 0.00 0.00 41.32 2.40
6435 8863 7.086376 ACATTCACTACATGCAAGAACAAATC 58.914 34.615 0.00 0.00 0.00 2.17
6436 8864 6.985117 ACATTCACTACATGCAAGAACAAAT 58.015 32.000 0.00 0.00 0.00 2.32
6437 8865 6.389830 ACATTCACTACATGCAAGAACAAA 57.610 33.333 0.00 0.00 0.00 2.83
6438 8866 5.334028 CGACATTCACTACATGCAAGAACAA 60.334 40.000 0.00 0.00 0.00 2.83
6439 8867 4.152223 CGACATTCACTACATGCAAGAACA 59.848 41.667 0.00 0.00 0.00 3.18
6440 8868 4.152402 ACGACATTCACTACATGCAAGAAC 59.848 41.667 0.00 0.00 0.00 3.01
6441 8869 4.152223 CACGACATTCACTACATGCAAGAA 59.848 41.667 0.00 0.00 0.00 2.52
6442 8870 3.679502 CACGACATTCACTACATGCAAGA 59.320 43.478 0.00 0.00 0.00 3.02
6443 8871 3.181517 CCACGACATTCACTACATGCAAG 60.182 47.826 0.00 0.00 0.00 4.01
6444 8872 2.741517 CCACGACATTCACTACATGCAA 59.258 45.455 0.00 0.00 0.00 4.08
6445 8873 2.028567 TCCACGACATTCACTACATGCA 60.029 45.455 0.00 0.00 0.00 3.96
6446 8874 2.604914 CTCCACGACATTCACTACATGC 59.395 50.000 0.00 0.00 0.00 4.06
6447 8875 3.119137 TCCTCCACGACATTCACTACATG 60.119 47.826 0.00 0.00 0.00 3.21
6448 8876 3.096852 TCCTCCACGACATTCACTACAT 58.903 45.455 0.00 0.00 0.00 2.29
6449 8877 2.492088 CTCCTCCACGACATTCACTACA 59.508 50.000 0.00 0.00 0.00 2.74
6450 8878 2.159226 CCTCCTCCACGACATTCACTAC 60.159 54.545 0.00 0.00 0.00 2.73
6481 8909 4.279420 ACAATCCTTCCTCAAACTTGAAGC 59.721 41.667 0.00 0.00 36.64 3.86
6489 8917 2.813754 CTCGCAACAATCCTTCCTCAAA 59.186 45.455 0.00 0.00 0.00 2.69
6490 8918 2.038426 TCTCGCAACAATCCTTCCTCAA 59.962 45.455 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.