Multiple sequence alignment - TraesCS4A01G057300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G057300 chr4A 100.000 9216 0 0 1 9216 48143801 48153016 0.000000e+00 17019.0
1 TraesCS4A01G057300 chr4A 91.667 180 15 0 3791 3970 48147501 48147680 5.530000e-62 250.0
2 TraesCS4A01G057300 chr4A 91.667 180 15 0 3701 3880 48147591 48147770 5.530000e-62 250.0
3 TraesCS4A01G057300 chr4A 94.595 148 6 2 232 377 423202835 423202688 2.590000e-55 228.0
4 TraesCS4A01G057300 chr4D 95.872 6637 174 30 373 6981 415925431 415918867 0.000000e+00 10647.0
5 TraesCS4A01G057300 chr4D 95.074 1421 39 16 7090 8497 415918794 415917392 0.000000e+00 2207.0
6 TraesCS4A01G057300 chr4D 88.276 725 74 9 8501 9216 415917321 415916599 0.000000e+00 857.0
7 TraesCS4A01G057300 chr4D 81.921 354 37 14 8517 8845 467991089 467991440 3.280000e-69 274.0
8 TraesCS4A01G057300 chr4D 93.889 180 11 0 3701 3880 415922020 415921841 1.180000e-68 272.0
9 TraesCS4A01G057300 chr4D 91.111 180 16 0 3791 3970 415922110 415921931 2.570000e-60 244.0
10 TraesCS4A01G057300 chr4D 93.103 145 8 2 100 244 415925570 415925428 2.610000e-50 211.0
11 TraesCS4A01G057300 chr4D 91.083 157 10 2 5398 5553 74079504 74079351 9.380000e-50 209.0
12 TraesCS4A01G057300 chr4D 79.433 282 38 12 8580 8842 479420781 479421061 2.040000e-41 182.0
13 TraesCS4A01G057300 chr4D 90.000 90 9 0 3701 3790 415921930 415921841 5.850000e-22 117.0
14 TraesCS4A01G057300 chr4D 97.872 47 1 0 7046 7092 415918871 415918825 2.130000e-11 82.4
15 TraesCS4A01G057300 chr4D 88.636 44 4 1 8790 8832 336241262 336241305 1.700000e-02 52.8
16 TraesCS4A01G057300 chr4D 88.636 44 4 1 8790 8832 336322005 336322048 1.700000e-02 52.8
17 TraesCS4A01G057300 chr4B 96.289 2910 79 7 3797 6700 512560652 512557766 0.000000e+00 4748.0
18 TraesCS4A01G057300 chr4B 93.988 1630 44 11 2342 3970 512562345 512560769 0.000000e+00 2418.0
19 TraesCS4A01G057300 chr4B 90.883 1755 109 27 373 2099 512564075 512562344 0.000000e+00 2307.0
20 TraesCS4A01G057300 chr4B 94.340 1272 41 20 7090 8353 512557244 512555996 0.000000e+00 1921.0
21 TraesCS4A01G057300 chr4B 97.727 396 9 0 6697 7092 512557673 512557278 0.000000e+00 682.0
22 TraesCS4A01G057300 chr4B 89.218 371 38 2 8846 9216 512555601 512555233 6.520000e-126 462.0
23 TraesCS4A01G057300 chr4B 93.156 263 18 0 3701 3963 512560948 512560686 4.040000e-103 387.0
24 TraesCS4A01G057300 chr4B 84.302 344 37 4 8507 8850 512555846 512555520 4.150000e-83 320.0
25 TraesCS4A01G057300 chr4B 88.048 251 21 6 1 244 512564320 512564072 1.170000e-73 289.0
26 TraesCS4A01G057300 chr4B 92.529 174 13 0 3707 3880 512560652 512560479 5.530000e-62 250.0
27 TraesCS4A01G057300 chr4B 91.011 178 16 0 3793 3970 512561036 512560859 3.330000e-59 241.0
28 TraesCS4A01G057300 chr4B 91.329 173 15 0 3701 3873 512560858 512560686 4.300000e-58 237.0
29 TraesCS4A01G057300 chr4B 91.026 156 11 1 5398 5553 106227561 106227409 3.370000e-49 207.0
30 TraesCS4A01G057300 chr4B 95.238 84 4 0 3887 3970 512560652 512560569 5.810000e-27 134.0
31 TraesCS4A01G057300 chr4B 90.000 90 9 0 3701 3790 512560568 512560479 5.850000e-22 117.0
32 TraesCS4A01G057300 chr3D 84.831 356 52 2 8862 9216 172903036 172902682 3.160000e-94 357.0
33 TraesCS4A01G057300 chr3D 83.427 356 53 5 8864 9216 39540483 39540835 8.920000e-85 326.0
34 TraesCS4A01G057300 chr3D 87.755 49 5 1 8781 8828 448291330 448291378 1.000000e-03 56.5
35 TraesCS4A01G057300 chr3A 83.799 358 54 3 8862 9216 211502044 211502400 4.120000e-88 337.0
36 TraesCS4A01G057300 chr3A 97.826 138 2 1 242 378 90279584 90279447 4.300000e-58 237.0
37 TraesCS4A01G057300 chr5D 83.056 360 51 9 8861 9216 371678074 371677721 1.490000e-82 318.0
38 TraesCS4A01G057300 chr5D 81.742 356 60 5 8861 9214 345521733 345521381 9.050000e-75 292.0
39 TraesCS4A01G057300 chr1D 82.961 358 55 5 8861 9216 483906116 483905763 1.490000e-82 318.0
40 TraesCS4A01G057300 chr1D 77.895 380 56 11 8501 8852 483906426 483906047 2.610000e-50 211.0
41 TraesCS4A01G057300 chr1A 83.008 359 53 8 8861 9216 580928953 580928600 1.490000e-82 318.0
42 TraesCS4A01G057300 chr1A 99.275 138 1 0 239 376 129388591 129388728 5.530000e-62 250.0
43 TraesCS4A01G057300 chr1A 98.571 140 1 1 240 378 465307097 465306958 7.150000e-61 246.0
44 TraesCS4A01G057300 chr1A 98.507 134 2 0 239 372 185844710 185844843 4.300000e-58 237.0
45 TraesCS4A01G057300 chr5A 99.275 138 1 0 238 375 122639228 122639091 5.530000e-62 250.0
46 TraesCS4A01G057300 chr5B 99.270 137 1 0 239 375 646662899 646662763 1.990000e-61 248.0
47 TraesCS4A01G057300 chr2B 99.259 135 1 0 240 374 258655375 258655509 2.570000e-60 244.0
48 TraesCS4A01G057300 chr2B 89.634 164 13 3 5395 5557 190022887 190023047 1.210000e-48 206.0
49 TraesCS4A01G057300 chr2B 96.429 112 3 1 1174 1285 671738602 671738492 5.680000e-42 183.0
50 TraesCS4A01G057300 chr2B 75.287 348 60 15 8525 8850 443241337 443240994 9.650000e-30 143.0
51 TraesCS4A01G057300 chr6B 96.454 141 4 1 232 372 672132745 672132884 2.000000e-56 231.0
52 TraesCS4A01G057300 chr2A 90.566 159 12 1 5396 5554 678363024 678362869 3.370000e-49 207.0
53 TraesCS4A01G057300 chr6D 88.000 175 15 4 5382 5556 320698245 320698077 1.570000e-47 202.0
54 TraesCS4A01G057300 chr6A 89.937 159 13 3 5397 5555 411770406 411770251 1.570000e-47 202.0
55 TraesCS4A01G057300 chr7A 88.957 163 16 2 5394 5556 113028386 113028226 5.640000e-47 200.0
56 TraesCS4A01G057300 chr2D 75.347 288 50 10 8580 8852 555952351 555952070 1.630000e-22 119.0
57 TraesCS4A01G057300 chr3B 79.444 180 18 11 8688 8852 251656197 251656022 9.780000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G057300 chr4A 48143801 48153016 9215 False 17019.000000 17019 100.000000 1 9216 1 chr4A.!!$F1 9215
1 TraesCS4A01G057300 chr4D 415916599 415925570 8971 True 1829.675000 10647 93.149625 100 9216 8 chr4D.!!$R2 9116
2 TraesCS4A01G057300 chr4B 512555233 512564320 9087 True 1036.642857 4748 92.004143 1 9216 14 chr4B.!!$R2 9215
3 TraesCS4A01G057300 chr1D 483905763 483906426 663 True 264.500000 318 80.428000 8501 9216 2 chr1D.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 296 0.031817 AGGGGGATTGGCAGGAATTG 60.032 55.0 0.00 0.00 0.00 2.32 F
289 297 0.032217 GGGGGATTGGCAGGAATTGA 60.032 55.0 0.00 0.00 0.00 2.57 F
294 302 0.031817 ATTGGCAGGAATTGAGGGGG 60.032 55.0 0.00 0.00 0.00 5.40 F
297 305 0.262876 GGCAGGAATTGAGGGGGATT 59.737 55.0 0.00 0.00 0.00 3.01 F
1338 1389 0.386476 GACGGGGGTTTTTGTCAACC 59.614 55.0 0.00 0.00 45.06 3.77 F
1433 1484 0.456312 GCCCTGTACTGAACGAGTCG 60.456 60.0 11.85 11.85 35.96 4.18 F
1791 1845 0.535102 CTTGTCACGCCTTTCCTGGT 60.535 55.0 0.00 0.00 0.00 4.00 F
3017 3073 0.673437 CCAACCAAACATGCGTCCTT 59.327 50.0 0.00 0.00 0.00 3.36 F
3917 4267 0.984230 CTCTTAGTCCCAAGCCCACA 59.016 55.0 0.00 0.00 0.00 4.17 F
5383 5738 0.523072 AGGCAGCAATTACTTGTGCG 59.477 50.0 0.00 0.00 45.62 5.34 F
6054 6413 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.00 0.00 3.82 F
7049 7507 0.670854 GCTTTCGACACTCCAGGACC 60.671 60.0 0.00 0.00 0.00 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1205 0.602060 TGCGCCAATCAATCAAGCAA 59.398 45.000 4.18 0.00 0.00 3.91 R
1169 1206 0.818938 ATGCGCCAATCAATCAAGCA 59.181 45.000 4.18 0.00 37.54 3.91 R
1907 1961 1.203994 CATGCTCTGGAGGCTTTTTGG 59.796 52.381 0.00 0.00 0.00 3.28 R
1928 1982 3.793559 ACATAAGCATGAGGAACGTACC 58.206 45.455 0.00 0.00 35.96 3.34 R
2308 2363 0.321210 TCACGAATGCACGGGTCATT 60.321 50.000 6.98 6.98 37.94 2.57 R
2628 2683 2.429930 CTGAGTTCCCCCGTGCAA 59.570 61.111 0.00 0.00 0.00 4.08 R
3616 3676 1.071071 CCTTGGGAGTAAACGGTGTCA 59.929 52.381 0.00 0.00 0.00 3.58 R
4089 4439 1.168714 GGAGGAACATGCACAGAACC 58.831 55.000 0.00 0.00 0.00 3.62 R
5878 6237 3.691118 GCACAGTCCAATATCTTGAGCAA 59.309 43.478 0.00 0.00 34.04 3.91 R
7012 7470 0.037447 GCAAGGCTGGGAGAAGAGTT 59.963 55.000 0.00 0.00 0.00 3.01 R
7867 8370 0.796312 CCGATTCCACTTCCACGTTG 59.204 55.000 0.00 0.00 0.00 4.10 R
8359 8914 0.519077 CCTGTTTTCAGCTTCGAGCC 59.481 55.000 3.66 0.00 43.77 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 60 7.760131 AATCAATTCACATATTTTTCGCCTG 57.240 32.000 0.00 0.00 0.00 4.85
70 77 3.123620 GCCTGCACGCTGAGGAAG 61.124 66.667 0.00 0.00 0.00 3.46
75 82 2.125350 CACGCTGAGGAAGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
112 119 3.370061 CACTAAAAGCAGGGTAACTACGC 59.630 47.826 0.00 0.00 39.19 4.42
136 143 6.367374 TTCCATTAGTGTGGTCAGTCAATA 57.633 37.500 0.00 0.00 40.27 1.90
179 186 0.616111 TGTGCACCCAACCAACCTTT 60.616 50.000 15.69 0.00 0.00 3.11
219 227 4.969196 AGCGGTGCGTCCACACAG 62.969 66.667 0.00 0.00 43.88 3.66
227 235 3.938112 GTCCACACAGACGACTGC 58.062 61.111 14.85 0.00 46.95 4.40
231 239 3.991051 ACACAGACGACTGCGGGG 61.991 66.667 14.85 5.06 46.95 5.73
233 241 2.915659 ACAGACGACTGCGGGGAA 60.916 61.111 14.85 0.00 46.95 3.97
234 242 2.283529 ACAGACGACTGCGGGGAAT 61.284 57.895 14.85 0.00 46.95 3.01
235 243 1.519455 CAGACGACTGCGGGGAATC 60.519 63.158 1.13 0.00 43.17 2.52
237 245 1.079405 GACGACTGCGGGGAATCAA 60.079 57.895 0.00 0.00 43.17 2.57
238 246 1.359459 GACGACTGCGGGGAATCAAC 61.359 60.000 0.00 0.00 43.17 3.18
239 247 1.079127 CGACTGCGGGGAATCAACT 60.079 57.895 0.00 0.00 0.00 3.16
240 248 0.174845 CGACTGCGGGGAATCAACTA 59.825 55.000 0.00 0.00 0.00 2.24
241 249 1.404986 CGACTGCGGGGAATCAACTAA 60.405 52.381 0.00 0.00 0.00 2.24
242 250 2.280628 GACTGCGGGGAATCAACTAAG 58.719 52.381 0.00 0.00 0.00 2.18
243 251 1.065418 ACTGCGGGGAATCAACTAAGG 60.065 52.381 0.00 0.00 0.00 2.69
244 252 0.393808 TGCGGGGAATCAACTAAGGC 60.394 55.000 0.00 0.00 0.00 4.35
245 253 1.101635 GCGGGGAATCAACTAAGGCC 61.102 60.000 0.00 0.00 0.00 5.19
246 254 0.546598 CGGGGAATCAACTAAGGCCT 59.453 55.000 0.00 0.00 0.00 5.19
247 255 1.064685 CGGGGAATCAACTAAGGCCTT 60.065 52.381 24.18 24.18 0.00 4.35
248 256 2.379005 GGGGAATCAACTAAGGCCTTG 58.621 52.381 28.77 19.17 0.00 3.61
249 257 2.291605 GGGGAATCAACTAAGGCCTTGT 60.292 50.000 28.77 19.82 0.00 3.16
250 258 3.431415 GGGAATCAACTAAGGCCTTGTT 58.569 45.455 28.77 23.97 0.00 2.83
251 259 3.444034 GGGAATCAACTAAGGCCTTGTTC 59.556 47.826 28.77 18.79 0.00 3.18
252 260 3.127030 GGAATCAACTAAGGCCTTGTTCG 59.873 47.826 28.77 20.00 0.00 3.95
253 261 2.178912 TCAACTAAGGCCTTGTTCGG 57.821 50.000 28.77 16.83 0.00 4.30
254 262 1.418637 TCAACTAAGGCCTTGTTCGGT 59.581 47.619 28.77 14.72 0.00 4.69
255 263 2.158726 TCAACTAAGGCCTTGTTCGGTT 60.159 45.455 28.77 19.10 0.00 4.44
256 264 1.892209 ACTAAGGCCTTGTTCGGTTG 58.108 50.000 28.77 3.09 0.00 3.77
257 265 1.418637 ACTAAGGCCTTGTTCGGTTGA 59.581 47.619 28.77 3.22 0.00 3.18
258 266 2.076863 CTAAGGCCTTGTTCGGTTGAG 58.923 52.381 28.77 10.00 0.00 3.02
259 267 0.537371 AAGGCCTTGTTCGGTTGAGG 60.537 55.000 19.73 0.00 0.00 3.86
260 268 1.228154 GGCCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
261 269 1.515521 GGCCTTGTTCGGTTGAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
262 270 1.515521 GCCTTGTTCGGTTGAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
263 271 0.179029 CCTTGTTCGGTTGAGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
264 272 1.675552 CTTGTTCGGTTGAGGTGGTT 58.324 50.000 0.00 0.00 0.00 3.67
265 273 2.021457 CTTGTTCGGTTGAGGTGGTTT 58.979 47.619 0.00 0.00 0.00 3.27
266 274 1.384525 TGTTCGGTTGAGGTGGTTTG 58.615 50.000 0.00 0.00 0.00 2.93
267 275 1.340211 TGTTCGGTTGAGGTGGTTTGT 60.340 47.619 0.00 0.00 0.00 2.83
268 276 1.064952 GTTCGGTTGAGGTGGTTTGTG 59.935 52.381 0.00 0.00 0.00 3.33
269 277 0.542333 TCGGTTGAGGTGGTTTGTGA 59.458 50.000 0.00 0.00 0.00 3.58
270 278 0.944386 CGGTTGAGGTGGTTTGTGAG 59.056 55.000 0.00 0.00 0.00 3.51
271 279 1.318576 GGTTGAGGTGGTTTGTGAGG 58.681 55.000 0.00 0.00 0.00 3.86
272 280 1.318576 GTTGAGGTGGTTTGTGAGGG 58.681 55.000 0.00 0.00 0.00 4.30
273 281 0.184933 TTGAGGTGGTTTGTGAGGGG 59.815 55.000 0.00 0.00 0.00 4.79
274 282 1.074951 GAGGTGGTTTGTGAGGGGG 59.925 63.158 0.00 0.00 0.00 5.40
275 283 1.386772 AGGTGGTTTGTGAGGGGGA 60.387 57.895 0.00 0.00 0.00 4.81
276 284 0.776080 AGGTGGTTTGTGAGGGGGAT 60.776 55.000 0.00 0.00 0.00 3.85
277 285 0.114364 GGTGGTTTGTGAGGGGGATT 59.886 55.000 0.00 0.00 0.00 3.01
278 286 1.256812 GTGGTTTGTGAGGGGGATTG 58.743 55.000 0.00 0.00 0.00 2.67
279 287 0.114168 TGGTTTGTGAGGGGGATTGG 59.886 55.000 0.00 0.00 0.00 3.16
280 288 1.257750 GGTTTGTGAGGGGGATTGGC 61.258 60.000 0.00 0.00 0.00 4.52
281 289 0.541764 GTTTGTGAGGGGGATTGGCA 60.542 55.000 0.00 0.00 0.00 4.92
282 290 0.251742 TTTGTGAGGGGGATTGGCAG 60.252 55.000 0.00 0.00 0.00 4.85
283 291 2.153898 TTGTGAGGGGGATTGGCAGG 62.154 60.000 0.00 0.00 0.00 4.85
284 292 2.127065 TGAGGGGGATTGGCAGGA 59.873 61.111 0.00 0.00 0.00 3.86
285 293 1.543642 TGAGGGGGATTGGCAGGAA 60.544 57.895 0.00 0.00 0.00 3.36
286 294 0.925720 TGAGGGGGATTGGCAGGAAT 60.926 55.000 0.00 0.00 0.00 3.01
287 295 0.262876 GAGGGGGATTGGCAGGAATT 59.737 55.000 0.00 0.00 0.00 2.17
288 296 0.031817 AGGGGGATTGGCAGGAATTG 60.032 55.000 0.00 0.00 0.00 2.32
289 297 0.032217 GGGGGATTGGCAGGAATTGA 60.032 55.000 0.00 0.00 0.00 2.57
290 298 1.406903 GGGGATTGGCAGGAATTGAG 58.593 55.000 0.00 0.00 0.00 3.02
291 299 1.406903 GGGATTGGCAGGAATTGAGG 58.593 55.000 0.00 0.00 0.00 3.86
292 300 1.406903 GGATTGGCAGGAATTGAGGG 58.593 55.000 0.00 0.00 0.00 4.30
293 301 1.406903 GATTGGCAGGAATTGAGGGG 58.593 55.000 0.00 0.00 0.00 4.79
294 302 0.031817 ATTGGCAGGAATTGAGGGGG 60.032 55.000 0.00 0.00 0.00 5.40
295 303 1.145900 TTGGCAGGAATTGAGGGGGA 61.146 55.000 0.00 0.00 0.00 4.81
296 304 0.925720 TGGCAGGAATTGAGGGGGAT 60.926 55.000 0.00 0.00 0.00 3.85
297 305 0.262876 GGCAGGAATTGAGGGGGATT 59.737 55.000 0.00 0.00 0.00 3.01
298 306 1.499007 GGCAGGAATTGAGGGGGATTA 59.501 52.381 0.00 0.00 0.00 1.75
299 307 2.489802 GGCAGGAATTGAGGGGGATTAG 60.490 54.545 0.00 0.00 0.00 1.73
300 308 2.443255 GCAGGAATTGAGGGGGATTAGA 59.557 50.000 0.00 0.00 0.00 2.10
301 309 3.075134 GCAGGAATTGAGGGGGATTAGAT 59.925 47.826 0.00 0.00 0.00 1.98
302 310 4.809007 GCAGGAATTGAGGGGGATTAGATC 60.809 50.000 0.00 0.00 0.00 2.75
313 321 3.704800 GGATTAGATCCCCTACAAGCC 57.295 52.381 0.00 0.00 43.88 4.35
314 322 2.979678 GGATTAGATCCCCTACAAGCCA 59.020 50.000 0.00 0.00 43.88 4.75
315 323 3.394606 GGATTAGATCCCCTACAAGCCAA 59.605 47.826 0.00 0.00 43.88 4.52
316 324 4.141251 GGATTAGATCCCCTACAAGCCAAA 60.141 45.833 0.00 0.00 43.88 3.28
317 325 5.458215 GGATTAGATCCCCTACAAGCCAAAT 60.458 44.000 0.00 0.00 43.88 2.32
318 326 5.466127 TTAGATCCCCTACAAGCCAAATT 57.534 39.130 0.00 0.00 0.00 1.82
319 327 3.903467 AGATCCCCTACAAGCCAAATTC 58.097 45.455 0.00 0.00 0.00 2.17
320 328 2.525105 TCCCCTACAAGCCAAATTCC 57.475 50.000 0.00 0.00 0.00 3.01
321 329 2.000048 TCCCCTACAAGCCAAATTCCT 59.000 47.619 0.00 0.00 0.00 3.36
322 330 2.025321 TCCCCTACAAGCCAAATTCCTC 60.025 50.000 0.00 0.00 0.00 3.71
323 331 2.024941 CCCCTACAAGCCAAATTCCTCT 60.025 50.000 0.00 0.00 0.00 3.69
324 332 3.282885 CCCTACAAGCCAAATTCCTCTC 58.717 50.000 0.00 0.00 0.00 3.20
325 333 3.282885 CCTACAAGCCAAATTCCTCTCC 58.717 50.000 0.00 0.00 0.00 3.71
326 334 2.978156 ACAAGCCAAATTCCTCTCCA 57.022 45.000 0.00 0.00 0.00 3.86
327 335 3.243359 ACAAGCCAAATTCCTCTCCAA 57.757 42.857 0.00 0.00 0.00 3.53
328 336 3.782992 ACAAGCCAAATTCCTCTCCAAT 58.217 40.909 0.00 0.00 0.00 3.16
329 337 3.766051 ACAAGCCAAATTCCTCTCCAATC 59.234 43.478 0.00 0.00 0.00 2.67
330 338 3.023939 AGCCAAATTCCTCTCCAATCC 57.976 47.619 0.00 0.00 0.00 3.01
331 339 2.312741 AGCCAAATTCCTCTCCAATCCA 59.687 45.455 0.00 0.00 0.00 3.41
332 340 2.428530 GCCAAATTCCTCTCCAATCCAC 59.571 50.000 0.00 0.00 0.00 4.02
333 341 3.879321 GCCAAATTCCTCTCCAATCCACT 60.879 47.826 0.00 0.00 0.00 4.00
334 342 3.950395 CCAAATTCCTCTCCAATCCACTC 59.050 47.826 0.00 0.00 0.00 3.51
335 343 3.941704 AATTCCTCTCCAATCCACTCC 57.058 47.619 0.00 0.00 0.00 3.85
336 344 2.342406 TTCCTCTCCAATCCACTCCA 57.658 50.000 0.00 0.00 0.00 3.86
337 345 2.342406 TCCTCTCCAATCCACTCCAA 57.658 50.000 0.00 0.00 0.00 3.53
338 346 2.850833 TCCTCTCCAATCCACTCCAAT 58.149 47.619 0.00 0.00 0.00 3.16
339 347 2.774234 TCCTCTCCAATCCACTCCAATC 59.226 50.000 0.00 0.00 0.00 2.67
340 348 2.158696 CCTCTCCAATCCACTCCAATCC 60.159 54.545 0.00 0.00 0.00 3.01
341 349 1.846439 TCTCCAATCCACTCCAATCCC 59.154 52.381 0.00 0.00 0.00 3.85
342 350 0.926293 TCCAATCCACTCCAATCCCC 59.074 55.000 0.00 0.00 0.00 4.81
343 351 0.929244 CCAATCCACTCCAATCCCCT 59.071 55.000 0.00 0.00 0.00 4.79
344 352 1.288932 CCAATCCACTCCAATCCCCTT 59.711 52.381 0.00 0.00 0.00 3.95
345 353 2.381911 CAATCCACTCCAATCCCCTTG 58.618 52.381 0.00 0.00 34.42 3.61
360 368 3.298686 CCCTTGGGAGGAGGATTAAAC 57.701 52.381 0.00 0.00 46.74 2.01
361 369 2.421529 CCCTTGGGAGGAGGATTAAACG 60.422 54.545 0.00 0.00 46.74 3.60
362 370 2.504175 CCTTGGGAGGAGGATTAAACGA 59.496 50.000 0.00 0.00 46.74 3.85
363 371 3.054655 CCTTGGGAGGAGGATTAAACGAA 60.055 47.826 0.00 0.00 46.74 3.85
364 372 3.622166 TGGGAGGAGGATTAAACGAAC 57.378 47.619 0.00 0.00 0.00 3.95
365 373 2.907696 TGGGAGGAGGATTAAACGAACA 59.092 45.455 0.00 0.00 0.00 3.18
366 374 3.328343 TGGGAGGAGGATTAAACGAACAA 59.672 43.478 0.00 0.00 0.00 2.83
367 375 3.939592 GGGAGGAGGATTAAACGAACAAG 59.060 47.826 0.00 0.00 0.00 3.16
368 376 3.939592 GGAGGAGGATTAAACGAACAAGG 59.060 47.826 0.00 0.00 0.00 3.61
369 377 3.344515 AGGAGGATTAAACGAACAAGGC 58.655 45.455 0.00 0.00 0.00 4.35
370 378 2.422479 GGAGGATTAAACGAACAAGGCC 59.578 50.000 0.00 0.00 0.00 5.19
371 379 3.344515 GAGGATTAAACGAACAAGGCCT 58.655 45.455 0.00 0.00 0.00 5.19
423 431 2.122636 TTGGCCCCCAAACCCAAG 60.123 61.111 0.00 0.00 40.92 3.61
442 450 3.812019 CGCAGCGTACCGTCTCCT 61.812 66.667 6.65 0.00 0.00 3.69
452 460 2.125912 CGTCTCCTGGCTTCGGTG 60.126 66.667 0.00 0.00 0.00 4.94
504 512 2.203139 CCGCACTCCACACCAACA 60.203 61.111 0.00 0.00 0.00 3.33
568 576 4.760047 GCCCCACACGTCAGCGAT 62.760 66.667 0.00 0.00 42.00 4.58
790 798 1.620739 ATCCTCGCTGCATGACACCT 61.621 55.000 0.00 0.00 0.00 4.00
791 799 2.104859 CCTCGCTGCATGACACCTG 61.105 63.158 0.00 0.00 0.00 4.00
794 802 2.352422 GCTGCATGACACCTGGGA 59.648 61.111 0.00 0.00 0.00 4.37
797 805 2.436646 GCATGACACCTGGGACCG 60.437 66.667 0.00 0.00 0.00 4.79
798 806 2.268920 CATGACACCTGGGACCGG 59.731 66.667 0.00 0.00 0.00 5.28
800 808 4.954118 TGACACCTGGGACCGGCT 62.954 66.667 0.00 0.00 0.00 5.52
801 809 2.682494 GACACCTGGGACCGGCTA 60.682 66.667 0.00 0.00 0.00 3.93
1171 1208 3.057969 CCCCCTTTTCCATTTCTTTGC 57.942 47.619 0.00 0.00 0.00 3.68
1205 1246 3.662117 ATGCCGCCTCTTTTCCCCC 62.662 63.158 0.00 0.00 0.00 5.40
1221 1262 4.457181 CCACCCCCAAATCCCCCG 62.457 72.222 0.00 0.00 0.00 5.73
1335 1386 1.152715 GGGACGGGGGTTTTTGTCA 60.153 57.895 0.00 0.00 33.04 3.58
1338 1389 0.386476 GACGGGGGTTTTTGTCAACC 59.614 55.000 0.00 0.00 45.06 3.77
1433 1484 0.456312 GCCCTGTACTGAACGAGTCG 60.456 60.000 11.85 11.85 35.96 4.18
1516 1567 1.103803 TCGCTCGCTCTACTTCCATT 58.896 50.000 0.00 0.00 0.00 3.16
1641 1692 7.723172 AGTTGAGGTTGATTTTGATTCTCTTCT 59.277 33.333 0.00 0.00 0.00 2.85
1642 1693 8.355913 GTTGAGGTTGATTTTGATTCTCTTCTT 58.644 33.333 0.00 0.00 0.00 2.52
1643 1694 9.573166 TTGAGGTTGATTTTGATTCTCTTCTTA 57.427 29.630 0.00 0.00 0.00 2.10
1705 1756 1.054406 GTCTGGGCTGGGCTGGTATA 61.054 60.000 0.00 0.00 0.00 1.47
1724 1778 8.742125 TGGTATATAGATCCAAGATCCAACTT 57.258 34.615 0.99 0.00 0.00 2.66
1736 1790 4.820775 AGATCCAACTTCCTATGCCTAGA 58.179 43.478 0.00 0.00 0.00 2.43
1767 1821 4.336889 TCCGCACTTGGATTAGGATAAG 57.663 45.455 0.00 0.00 31.53 1.73
1791 1845 0.535102 CTTGTCACGCCTTTCCTGGT 60.535 55.000 0.00 0.00 0.00 4.00
1907 1961 0.980423 AGAGGTCTTTCTGGGCAGTC 59.020 55.000 0.00 0.00 0.00 3.51
1951 2006 2.906354 ACGTTCCTCATGCTTATGTCC 58.094 47.619 0.00 0.00 0.00 4.02
2029 2084 2.689983 CCTGCTTTGGTTTCACTGTTCT 59.310 45.455 0.00 0.00 0.00 3.01
2031 2086 4.023707 CCTGCTTTGGTTTCACTGTTCTAG 60.024 45.833 0.00 0.00 0.00 2.43
2102 2157 7.693951 GTGACAATTGTTATCTGTAGTGAATGC 59.306 37.037 13.36 0.00 0.00 3.56
2108 2163 8.437360 TTGTTATCTGTAGTGAATGCCTTATG 57.563 34.615 0.00 0.00 0.00 1.90
2268 2323 5.567138 ATTACTTGGTAAACTCATGCTGC 57.433 39.130 0.00 0.00 31.56 5.25
2290 2345 5.774690 TGCATCAGGTTTTATCCTCACTTTT 59.225 36.000 0.00 0.00 35.37 2.27
2527 2582 4.820173 GGCTCACACCTTATTAATACCCAC 59.180 45.833 0.00 0.00 0.00 4.61
2628 2683 7.953493 TGGTTTCCCTAGACCATTTAAAGAAAT 59.047 33.333 0.00 0.00 40.85 2.17
2634 2689 6.747280 CCTAGACCATTTAAAGAAATTGCACG 59.253 38.462 0.00 0.00 32.73 5.34
3017 3073 0.673437 CCAACCAAACATGCGTCCTT 59.327 50.000 0.00 0.00 0.00 3.36
3616 3676 3.510360 ACACCGCTTACTCACAAGTCTAT 59.490 43.478 0.00 0.00 36.92 1.98
3666 3726 1.999735 CGCTTAATCACAAGGCTTCGA 59.000 47.619 0.00 0.00 0.00 3.71
3708 3768 2.037772 ACAGCACCTCTTACTCACAAGG 59.962 50.000 0.00 0.00 34.94 3.61
3758 3818 2.751436 CCACCCCATCCTGTTGCG 60.751 66.667 0.00 0.00 0.00 4.85
3917 4267 0.984230 CTCTTAGTCCCAAGCCCACA 59.016 55.000 0.00 0.00 0.00 4.17
3954 4304 2.084610 TGCATCGTGTCTTTCTCCTG 57.915 50.000 0.00 0.00 0.00 3.86
4029 4379 1.066573 CACTCTACAAGGCTGTCCAGG 60.067 57.143 0.00 0.00 36.96 4.45
4487 4840 7.587037 TTCCAATGATTTGAGAGTTGTTTCT 57.413 32.000 0.00 0.00 34.60 2.52
4510 4863 2.166459 CCACTAAGAGCCATGTCGAGAA 59.834 50.000 0.00 0.00 0.00 2.87
4591 4944 6.785076 TCCTGAAAGTAACATATTCAACCCA 58.215 36.000 0.00 0.00 33.08 4.51
4760 5113 3.071580 GTCCTCATGAAAGGGCTCG 57.928 57.895 0.00 0.00 38.07 5.03
4931 5284 6.988580 TGCAAGGACAGAATGATATAACAGAG 59.011 38.462 0.00 0.00 39.69 3.35
5383 5738 0.523072 AGGCAGCAATTACTTGTGCG 59.477 50.000 0.00 0.00 45.62 5.34
5502 5857 8.581263 CACACACTAAAACGTGTCTATATACAC 58.419 37.037 10.55 10.55 45.74 2.90
5878 6237 4.664688 AATTCAAGATGGAACCACCTCT 57.335 40.909 0.00 0.00 39.86 3.69
6020 6379 6.865205 GGTGCCATATAAAAAGATCTTGCATC 59.135 38.462 9.17 8.10 0.00 3.91
6032 6391 5.767269 AGATCTTGCATCGTATACAGTCTG 58.233 41.667 3.32 0.00 0.00 3.51
6049 6408 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
6051 6410 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6053 6412 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6054 6413 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6055 6414 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6057 6416 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6058 6417 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6059 6418 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6060 6419 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6061 6420 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6062 6421 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6063 6422 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6064 6423 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6065 6424 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6066 6425 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6067 6426 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6068 6427 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6069 6428 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6070 6429 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6071 6430 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6072 6431 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6073 6432 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6074 6433 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6075 6434 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6076 6435 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
6077 6436 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
6472 6831 6.952773 TGTTTGAAAAACTAGTATGCAGGT 57.047 33.333 0.00 0.00 0.00 4.00
6503 6862 5.466728 TCATTTAGCATCATCTAACTTCCGC 59.533 40.000 0.00 0.00 0.00 5.54
6504 6863 2.246719 AGCATCATCTAACTTCCGCC 57.753 50.000 0.00 0.00 0.00 6.13
6659 7018 9.499369 ACTGTAATATATCTGAGGATATTGGCT 57.501 33.333 13.74 0.00 40.97 4.75
6795 7250 4.689612 TTGGGTGGTAGATCTTGCTATC 57.310 45.455 0.00 0.00 0.00 2.08
6971 7429 1.018226 CCTGGCTTCACAAGAGCTCG 61.018 60.000 8.37 0.00 0.00 5.03
7012 7470 6.660521 AGGAAAAACTGCAGAATCACATATCA 59.339 34.615 23.35 0.00 0.00 2.15
7049 7507 0.670854 GCTTTCGACACTCCAGGACC 60.671 60.000 0.00 0.00 0.00 4.46
7265 7759 4.752661 CACCAATTGGAAAAGCAAATGG 57.247 40.909 31.22 0.00 37.38 3.16
7307 7801 2.024414 GGTGCAACATTATCCCTGTCC 58.976 52.381 0.00 0.00 39.98 4.02
7386 7880 8.088463 TGGTTAGGAGTCCGGTTATTTATTTA 57.912 34.615 2.76 0.00 0.00 1.40
7444 7938 7.253750 GCTTGTGCATTAATTATTTCAACTCCG 60.254 37.037 0.00 0.00 39.41 4.63
7486 7980 4.368565 AAGAAGAAACTCTTGTACCCCC 57.631 45.455 0.00 0.00 36.73 5.40
7487 7981 3.599348 AGAAGAAACTCTTGTACCCCCT 58.401 45.455 0.00 0.00 36.73 4.79
7545 8040 1.671379 GTTGGTCTGCTCCCCGAAC 60.671 63.158 0.00 0.00 0.00 3.95
7607 8103 3.967332 TCGGACCCTCGTTTAAGAAAT 57.033 42.857 0.00 0.00 0.00 2.17
7608 8104 5.404466 TTCGGACCCTCGTTTAAGAAATA 57.596 39.130 0.00 0.00 0.00 1.40
7609 8105 5.002464 TCGGACCCTCGTTTAAGAAATAG 57.998 43.478 0.00 0.00 0.00 1.73
7638 8134 3.872696 CAAGGGACTGTTTTTGCCTTTT 58.127 40.909 0.00 0.00 41.73 2.27
7644 8140 6.208797 AGGGACTGTTTTTGCCTTTTACTATC 59.791 38.462 0.00 0.00 37.18 2.08
7707 8206 6.489361 ACATCAATGCCTCTGATTTTCCTATC 59.511 38.462 0.00 0.00 30.99 2.08
7810 8312 2.977914 AGCTATCTGCACGACATGTTT 58.022 42.857 0.00 0.00 45.94 2.83
7867 8370 0.389817 TGATACGTGTGCAGCAGGTC 60.390 55.000 14.79 6.11 44.08 3.85
8075 8578 2.831742 AGCATCGGCATTGCAGGG 60.832 61.111 11.39 4.19 44.61 4.45
8116 8619 1.493950 CCGAATCCGATGCTGCTGTC 61.494 60.000 0.00 0.00 38.22 3.51
8222 8725 1.819632 CCACCAACATAGCCGAGGC 60.820 63.158 5.89 5.89 42.33 4.70
8363 8918 7.969536 ATGTATGTATTCAGTGTATTGGCTC 57.030 36.000 0.00 0.00 0.00 4.70
8364 8919 5.983118 TGTATGTATTCAGTGTATTGGCTCG 59.017 40.000 0.00 0.00 0.00 5.03
8365 8920 4.729227 TGTATTCAGTGTATTGGCTCGA 57.271 40.909 0.00 0.00 0.00 4.04
8366 8921 5.079689 TGTATTCAGTGTATTGGCTCGAA 57.920 39.130 0.00 0.00 0.00 3.71
8367 8922 5.109210 TGTATTCAGTGTATTGGCTCGAAG 58.891 41.667 0.00 0.00 0.00 3.79
8368 8923 2.010145 TCAGTGTATTGGCTCGAAGC 57.990 50.000 0.00 0.00 41.46 3.86
8369 8924 1.550524 TCAGTGTATTGGCTCGAAGCT 59.449 47.619 6.78 0.00 41.99 3.74
8370 8925 1.662629 CAGTGTATTGGCTCGAAGCTG 59.337 52.381 6.78 0.00 41.99 4.24
8371 8926 1.550524 AGTGTATTGGCTCGAAGCTGA 59.449 47.619 6.78 0.00 41.99 4.26
8372 8927 2.028112 AGTGTATTGGCTCGAAGCTGAA 60.028 45.455 6.78 2.12 41.99 3.02
8373 8928 2.742053 GTGTATTGGCTCGAAGCTGAAA 59.258 45.455 6.78 1.58 41.99 2.69
8374 8929 3.188460 GTGTATTGGCTCGAAGCTGAAAA 59.812 43.478 6.78 0.00 41.99 2.29
8375 8930 2.997485 ATTGGCTCGAAGCTGAAAAC 57.003 45.000 6.78 0.00 41.99 2.43
8376 8931 1.674359 TTGGCTCGAAGCTGAAAACA 58.326 45.000 6.78 0.00 41.99 2.83
8377 8932 1.229428 TGGCTCGAAGCTGAAAACAG 58.771 50.000 6.78 0.00 41.99 3.16
8378 8933 0.519077 GGCTCGAAGCTGAAAACAGG 59.481 55.000 6.78 0.00 41.99 4.00
8379 8934 1.230324 GCTCGAAGCTGAAAACAGGT 58.770 50.000 0.00 0.00 38.45 4.00
8380 8935 2.413837 GCTCGAAGCTGAAAACAGGTA 58.586 47.619 0.00 0.00 38.45 3.08
8381 8936 2.157863 GCTCGAAGCTGAAAACAGGTAC 59.842 50.000 0.00 0.00 38.45 3.34
8382 8937 3.390135 CTCGAAGCTGAAAACAGGTACA 58.610 45.455 0.00 0.00 32.03 2.90
8383 8938 3.799366 TCGAAGCTGAAAACAGGTACAA 58.201 40.909 0.00 0.00 32.03 2.41
8384 8939 4.193090 TCGAAGCTGAAAACAGGTACAAA 58.807 39.130 0.00 0.00 32.03 2.83
8385 8940 4.272504 TCGAAGCTGAAAACAGGTACAAAG 59.727 41.667 0.00 0.00 32.03 2.77
8386 8941 4.035208 CGAAGCTGAAAACAGGTACAAAGT 59.965 41.667 0.00 0.00 32.03 2.66
8387 8942 5.500645 AAGCTGAAAACAGGTACAAAGTC 57.499 39.130 0.00 0.00 32.03 3.01
8388 8943 3.560068 AGCTGAAAACAGGTACAAAGTCG 59.440 43.478 0.00 0.00 0.00 4.18
8389 8944 3.558418 GCTGAAAACAGGTACAAAGTCGA 59.442 43.478 0.00 0.00 0.00 4.20
8390 8945 4.034742 GCTGAAAACAGGTACAAAGTCGAA 59.965 41.667 0.00 0.00 0.00 3.71
8391 8946 5.277828 GCTGAAAACAGGTACAAAGTCGAAT 60.278 40.000 0.00 0.00 0.00 3.34
8392 8947 6.073440 GCTGAAAACAGGTACAAAGTCGAATA 60.073 38.462 0.00 0.00 0.00 1.75
8400 8955 4.792189 GGTACAAAGTCGAATAGTCAGTCG 59.208 45.833 0.00 0.00 43.35 4.18
8410 8965 8.452534 AGTCGAATAGTCAGTCGGATATAATTC 58.547 37.037 0.00 0.00 42.31 2.17
8482 9041 7.413438 CCATTCTTGATCTTTCGAGTAACAAGG 60.413 40.741 15.62 5.89 35.22 3.61
8497 9056 2.514803 ACAAGGGACAACATGGTTAGC 58.485 47.619 0.00 0.00 0.00 3.09
8498 9057 2.158534 ACAAGGGACAACATGGTTAGCA 60.159 45.455 0.00 0.00 0.00 3.49
8499 9058 2.489329 CAAGGGACAACATGGTTAGCAG 59.511 50.000 0.00 0.00 0.00 4.24
8527 9154 2.009051 TGCGCCTTTATCATCACACAG 58.991 47.619 4.18 0.00 0.00 3.66
8534 9161 5.858581 GCCTTTATCATCACACAGAAACAAC 59.141 40.000 0.00 0.00 0.00 3.32
8635 9273 9.817365 CATAAAATTCATAGTTAGCTGATTCCG 57.183 33.333 0.00 0.00 0.00 4.30
8636 9274 7.865706 AAAATTCATAGTTAGCTGATTCCGT 57.134 32.000 0.00 0.00 0.00 4.69
8703 9341 7.017498 TGTGCGTTTGTTGATCTTTAAGTTA 57.983 32.000 0.00 0.00 0.00 2.24
8778 9425 3.261897 ACTCCGGACTTCTCAAATCATGT 59.738 43.478 0.00 0.00 0.00 3.21
8782 9429 2.424956 GGACTTCTCAAATCATGTGGGC 59.575 50.000 0.00 0.00 0.00 5.36
8783 9430 3.084039 GACTTCTCAAATCATGTGGGCA 58.916 45.455 0.00 0.00 0.00 5.36
8784 9431 3.499338 ACTTCTCAAATCATGTGGGCAA 58.501 40.909 0.00 0.00 0.00 4.52
8801 9449 1.616628 AACCCTTCGCCCTCATCCT 60.617 57.895 0.00 0.00 0.00 3.24
8805 9453 1.144936 CTTCGCCCTCATCCTCCAC 59.855 63.158 0.00 0.00 0.00 4.02
8817 9465 5.430886 CTCATCCTCCACAATCATGTTGTA 58.569 41.667 11.61 0.35 37.82 2.41
8821 9469 5.003160 TCCTCCACAATCATGTTGTACAAG 58.997 41.667 8.98 0.00 37.82 3.16
8837 9485 7.853437 TGTTGTACAAGATTACAAAACATGTCG 59.147 33.333 8.98 0.00 42.27 4.35
8855 9503 4.689071 TGTCGTGAGTTGTCAAAGTATGT 58.311 39.130 0.00 0.00 33.27 2.29
8856 9504 4.506288 TGTCGTGAGTTGTCAAAGTATGTG 59.494 41.667 0.00 0.00 33.27 3.21
8857 9505 4.743151 GTCGTGAGTTGTCAAAGTATGTGA 59.257 41.667 0.00 0.00 33.27 3.58
8869 9517 1.985159 AGTATGTGAGTTGCCCCTTCA 59.015 47.619 0.00 0.00 0.00 3.02
8928 9576 7.095910 ACAAAACATGTCATGAGTTGTCAAAA 58.904 30.769 19.77 0.00 37.96 2.44
8929 9577 7.063308 ACAAAACATGTCATGAGTTGTCAAAAC 59.937 33.333 19.77 0.00 37.96 2.43
8935 9583 4.508124 GTCATGAGTTGTCAAAACGTCTCT 59.492 41.667 0.00 0.00 35.88 3.10
8998 9646 2.839486 ACTTGGAGCACTTCGAATGA 57.161 45.000 0.00 0.00 0.00 2.57
9088 9737 7.013083 AGGATCGTATATAGTCTTCACAAACGT 59.987 37.037 0.00 0.00 0.00 3.99
9097 9746 1.801771 CTTCACAAACGTCGCCCATTA 59.198 47.619 0.00 0.00 0.00 1.90
9135 9784 2.290705 ACAAGGTAGTACCCCATGTTGC 60.291 50.000 16.05 0.00 39.75 4.17
9153 9802 0.459489 GCAGTTGTGCCCTTTGACAA 59.541 50.000 0.00 0.00 44.72 3.18
9165 9814 3.569701 CCCTTTGACAATGTAGTTGCACT 59.430 43.478 0.00 0.00 41.69 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 34 9.299963 CAGGCGAAAAATATGTGAATTGATTTA 57.700 29.630 0.00 0.00 0.00 1.40
40 43 2.159585 CGTGCAGGCGAAAAATATGTGA 60.160 45.455 0.00 0.00 0.00 3.58
46 49 1.081242 CAGCGTGCAGGCGAAAAAT 60.081 52.632 24.28 4.21 38.18 1.82
57 60 2.125350 CCTCCTTCCTCAGCGTGC 60.125 66.667 0.00 0.00 0.00 5.34
86 93 0.035820 TACCCTGCTTTTAGTGCCGG 60.036 55.000 0.00 0.00 35.10 6.13
112 119 4.271696 TGACTGACCACACTAATGGAAG 57.728 45.455 0.00 0.00 43.02 3.46
179 186 2.106477 TGCATTGCGTGGATAAGACA 57.894 45.000 3.84 0.00 0.00 3.41
219 227 1.079405 TTGATTCCCCGCAGTCGTC 60.079 57.895 0.00 0.00 0.00 4.20
227 235 0.546598 AGGCCTTAGTTGATTCCCCG 59.453 55.000 0.00 0.00 0.00 5.73
231 239 3.127030 CCGAACAAGGCCTTAGTTGATTC 59.873 47.826 27.33 18.41 0.00 2.52
233 241 2.039879 ACCGAACAAGGCCTTAGTTGAT 59.960 45.455 27.33 10.62 33.69 2.57
234 242 1.418637 ACCGAACAAGGCCTTAGTTGA 59.581 47.619 27.33 0.00 33.69 3.18
235 243 1.892209 ACCGAACAAGGCCTTAGTTG 58.108 50.000 27.33 16.88 33.69 3.16
237 245 1.418637 TCAACCGAACAAGGCCTTAGT 59.581 47.619 20.00 15.73 33.69 2.24
238 246 2.076863 CTCAACCGAACAAGGCCTTAG 58.923 52.381 20.00 15.05 33.69 2.18
239 247 1.271163 CCTCAACCGAACAAGGCCTTA 60.271 52.381 20.00 0.00 33.69 2.69
240 248 0.537371 CCTCAACCGAACAAGGCCTT 60.537 55.000 13.78 13.78 33.69 4.35
241 249 1.073199 CCTCAACCGAACAAGGCCT 59.927 57.895 0.00 0.00 33.69 5.19
242 250 1.228154 ACCTCAACCGAACAAGGCC 60.228 57.895 0.00 0.00 31.79 5.19
243 251 1.515521 CCACCTCAACCGAACAAGGC 61.516 60.000 0.00 0.00 31.79 4.35
244 252 0.179029 ACCACCTCAACCGAACAAGG 60.179 55.000 0.00 0.00 34.94 3.61
245 253 1.675552 AACCACCTCAACCGAACAAG 58.324 50.000 0.00 0.00 0.00 3.16
246 254 1.746220 CAAACCACCTCAACCGAACAA 59.254 47.619 0.00 0.00 0.00 2.83
247 255 1.340211 ACAAACCACCTCAACCGAACA 60.340 47.619 0.00 0.00 0.00 3.18
248 256 1.064952 CACAAACCACCTCAACCGAAC 59.935 52.381 0.00 0.00 0.00 3.95
249 257 1.065345 TCACAAACCACCTCAACCGAA 60.065 47.619 0.00 0.00 0.00 4.30
250 258 0.542333 TCACAAACCACCTCAACCGA 59.458 50.000 0.00 0.00 0.00 4.69
251 259 0.944386 CTCACAAACCACCTCAACCG 59.056 55.000 0.00 0.00 0.00 4.44
252 260 1.318576 CCTCACAAACCACCTCAACC 58.681 55.000 0.00 0.00 0.00 3.77
253 261 1.318576 CCCTCACAAACCACCTCAAC 58.681 55.000 0.00 0.00 0.00 3.18
254 262 0.184933 CCCCTCACAAACCACCTCAA 59.815 55.000 0.00 0.00 0.00 3.02
255 263 1.715019 CCCCCTCACAAACCACCTCA 61.715 60.000 0.00 0.00 0.00 3.86
256 264 1.074951 CCCCCTCACAAACCACCTC 59.925 63.158 0.00 0.00 0.00 3.85
257 265 0.776080 ATCCCCCTCACAAACCACCT 60.776 55.000 0.00 0.00 0.00 4.00
258 266 0.114364 AATCCCCCTCACAAACCACC 59.886 55.000 0.00 0.00 0.00 4.61
259 267 1.256812 CAATCCCCCTCACAAACCAC 58.743 55.000 0.00 0.00 0.00 4.16
260 268 0.114168 CCAATCCCCCTCACAAACCA 59.886 55.000 0.00 0.00 0.00 3.67
261 269 1.257750 GCCAATCCCCCTCACAAACC 61.258 60.000 0.00 0.00 0.00 3.27
262 270 0.541764 TGCCAATCCCCCTCACAAAC 60.542 55.000 0.00 0.00 0.00 2.93
263 271 0.251742 CTGCCAATCCCCCTCACAAA 60.252 55.000 0.00 0.00 0.00 2.83
264 272 1.383799 CTGCCAATCCCCCTCACAA 59.616 57.895 0.00 0.00 0.00 3.33
265 273 2.615465 CCTGCCAATCCCCCTCACA 61.615 63.158 0.00 0.00 0.00 3.58
266 274 1.863155 TTCCTGCCAATCCCCCTCAC 61.863 60.000 0.00 0.00 0.00 3.51
267 275 0.925720 ATTCCTGCCAATCCCCCTCA 60.926 55.000 0.00 0.00 0.00 3.86
268 276 0.262876 AATTCCTGCCAATCCCCCTC 59.737 55.000 0.00 0.00 0.00 4.30
269 277 0.031817 CAATTCCTGCCAATCCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
270 278 0.032217 TCAATTCCTGCCAATCCCCC 60.032 55.000 0.00 0.00 0.00 5.40
271 279 1.406903 CTCAATTCCTGCCAATCCCC 58.593 55.000 0.00 0.00 0.00 4.81
272 280 1.406903 CCTCAATTCCTGCCAATCCC 58.593 55.000 0.00 0.00 0.00 3.85
273 281 1.406903 CCCTCAATTCCTGCCAATCC 58.593 55.000 0.00 0.00 0.00 3.01
274 282 1.406903 CCCCTCAATTCCTGCCAATC 58.593 55.000 0.00 0.00 0.00 2.67
275 283 0.031817 CCCCCTCAATTCCTGCCAAT 60.032 55.000 0.00 0.00 0.00 3.16
276 284 1.145900 TCCCCCTCAATTCCTGCCAA 61.146 55.000 0.00 0.00 0.00 4.52
277 285 0.925720 ATCCCCCTCAATTCCTGCCA 60.926 55.000 0.00 0.00 0.00 4.92
278 286 0.262876 AATCCCCCTCAATTCCTGCC 59.737 55.000 0.00 0.00 0.00 4.85
279 287 2.443255 TCTAATCCCCCTCAATTCCTGC 59.557 50.000 0.00 0.00 0.00 4.85
280 288 4.263683 GGATCTAATCCCCCTCAATTCCTG 60.264 50.000 0.00 0.00 43.88 3.86
281 289 3.919554 GGATCTAATCCCCCTCAATTCCT 59.080 47.826 0.00 0.00 43.88 3.36
282 290 4.308526 GGATCTAATCCCCCTCAATTCC 57.691 50.000 0.00 0.00 43.88 3.01
294 302 4.706842 TTGGCTTGTAGGGGATCTAATC 57.293 45.455 0.00 0.00 0.00 1.75
295 303 5.669798 ATTTGGCTTGTAGGGGATCTAAT 57.330 39.130 0.00 0.00 0.00 1.73
296 304 5.445964 GAATTTGGCTTGTAGGGGATCTAA 58.554 41.667 0.00 0.00 0.00 2.10
297 305 4.141251 GGAATTTGGCTTGTAGGGGATCTA 60.141 45.833 0.00 0.00 0.00 1.98
298 306 3.373110 GGAATTTGGCTTGTAGGGGATCT 60.373 47.826 0.00 0.00 0.00 2.75
299 307 2.959030 GGAATTTGGCTTGTAGGGGATC 59.041 50.000 0.00 0.00 0.00 3.36
300 308 2.587307 AGGAATTTGGCTTGTAGGGGAT 59.413 45.455 0.00 0.00 0.00 3.85
301 309 2.000048 AGGAATTTGGCTTGTAGGGGA 59.000 47.619 0.00 0.00 0.00 4.81
302 310 2.024941 AGAGGAATTTGGCTTGTAGGGG 60.025 50.000 0.00 0.00 0.00 4.79
303 311 3.282885 GAGAGGAATTTGGCTTGTAGGG 58.717 50.000 0.00 0.00 0.00 3.53
304 312 3.282885 GGAGAGGAATTTGGCTTGTAGG 58.717 50.000 0.00 0.00 0.00 3.18
305 313 3.955471 TGGAGAGGAATTTGGCTTGTAG 58.045 45.455 0.00 0.00 0.00 2.74
306 314 4.380843 TTGGAGAGGAATTTGGCTTGTA 57.619 40.909 0.00 0.00 0.00 2.41
307 315 2.978156 TGGAGAGGAATTTGGCTTGT 57.022 45.000 0.00 0.00 0.00 3.16
308 316 3.131755 GGATTGGAGAGGAATTTGGCTTG 59.868 47.826 0.00 0.00 0.00 4.01
309 317 3.245730 TGGATTGGAGAGGAATTTGGCTT 60.246 43.478 0.00 0.00 0.00 4.35
310 318 2.312741 TGGATTGGAGAGGAATTTGGCT 59.687 45.455 0.00 0.00 0.00 4.75
311 319 2.428530 GTGGATTGGAGAGGAATTTGGC 59.571 50.000 0.00 0.00 0.00 4.52
312 320 3.950395 GAGTGGATTGGAGAGGAATTTGG 59.050 47.826 0.00 0.00 0.00 3.28
313 321 3.950395 GGAGTGGATTGGAGAGGAATTTG 59.050 47.826 0.00 0.00 0.00 2.32
314 322 3.593328 TGGAGTGGATTGGAGAGGAATTT 59.407 43.478 0.00 0.00 0.00 1.82
315 323 3.192944 TGGAGTGGATTGGAGAGGAATT 58.807 45.455 0.00 0.00 0.00 2.17
316 324 2.850833 TGGAGTGGATTGGAGAGGAAT 58.149 47.619 0.00 0.00 0.00 3.01
317 325 2.342406 TGGAGTGGATTGGAGAGGAA 57.658 50.000 0.00 0.00 0.00 3.36
318 326 2.342406 TTGGAGTGGATTGGAGAGGA 57.658 50.000 0.00 0.00 0.00 3.71
319 327 2.158696 GGATTGGAGTGGATTGGAGAGG 60.159 54.545 0.00 0.00 0.00 3.69
320 328 2.158696 GGGATTGGAGTGGATTGGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
321 329 1.846439 GGGATTGGAGTGGATTGGAGA 59.154 52.381 0.00 0.00 0.00 3.71
322 330 1.133668 GGGGATTGGAGTGGATTGGAG 60.134 57.143 0.00 0.00 0.00 3.86
323 331 0.926293 GGGGATTGGAGTGGATTGGA 59.074 55.000 0.00 0.00 0.00 3.53
324 332 0.929244 AGGGGATTGGAGTGGATTGG 59.071 55.000 0.00 0.00 0.00 3.16
325 333 2.381911 CAAGGGGATTGGAGTGGATTG 58.618 52.381 0.00 0.00 35.08 2.67
326 334 2.834638 CAAGGGGATTGGAGTGGATT 57.165 50.000 0.00 0.00 35.08 3.01
339 347 1.907240 TTAATCCTCCTCCCAAGGGG 58.093 55.000 5.08 0.00 43.63 4.79
340 348 2.421529 CGTTTAATCCTCCTCCCAAGGG 60.422 54.545 0.00 0.00 43.56 3.95
341 349 2.504175 TCGTTTAATCCTCCTCCCAAGG 59.496 50.000 0.00 0.00 44.89 3.61
342 350 3.906720 TCGTTTAATCCTCCTCCCAAG 57.093 47.619 0.00 0.00 0.00 3.61
343 351 3.328343 TGTTCGTTTAATCCTCCTCCCAA 59.672 43.478 0.00 0.00 0.00 4.12
344 352 2.907696 TGTTCGTTTAATCCTCCTCCCA 59.092 45.455 0.00 0.00 0.00 4.37
345 353 3.622166 TGTTCGTTTAATCCTCCTCCC 57.378 47.619 0.00 0.00 0.00 4.30
346 354 3.939592 CCTTGTTCGTTTAATCCTCCTCC 59.060 47.826 0.00 0.00 0.00 4.30
347 355 3.374367 GCCTTGTTCGTTTAATCCTCCTC 59.626 47.826 0.00 0.00 0.00 3.71
348 356 3.344515 GCCTTGTTCGTTTAATCCTCCT 58.655 45.455 0.00 0.00 0.00 3.69
349 357 2.422479 GGCCTTGTTCGTTTAATCCTCC 59.578 50.000 0.00 0.00 0.00 4.30
350 358 3.344515 AGGCCTTGTTCGTTTAATCCTC 58.655 45.455 0.00 0.00 0.00 3.71
351 359 3.434940 AGGCCTTGTTCGTTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
352 360 4.095932 CCTTAGGCCTTGTTCGTTTAATCC 59.904 45.833 12.58 0.00 0.00 3.01
353 361 4.939439 TCCTTAGGCCTTGTTCGTTTAATC 59.061 41.667 12.58 0.00 0.00 1.75
354 362 4.913784 TCCTTAGGCCTTGTTCGTTTAAT 58.086 39.130 12.58 0.00 0.00 1.40
355 363 4.354893 TCCTTAGGCCTTGTTCGTTTAA 57.645 40.909 12.58 0.00 0.00 1.52
356 364 4.320870 CTTCCTTAGGCCTTGTTCGTTTA 58.679 43.478 12.58 0.00 0.00 2.01
357 365 2.943036 TCCTTAGGCCTTGTTCGTTT 57.057 45.000 12.58 0.00 0.00 3.60
358 366 2.552373 CCTTCCTTAGGCCTTGTTCGTT 60.552 50.000 12.58 0.00 37.17 3.85
359 367 1.003233 CCTTCCTTAGGCCTTGTTCGT 59.997 52.381 12.58 0.00 37.17 3.85
360 368 1.278127 TCCTTCCTTAGGCCTTGTTCG 59.722 52.381 12.58 0.00 44.37 3.95
361 369 3.082548 GTTCCTTCCTTAGGCCTTGTTC 58.917 50.000 12.58 0.00 44.37 3.18
362 370 2.552373 CGTTCCTTCCTTAGGCCTTGTT 60.552 50.000 12.58 0.00 44.37 2.83
363 371 1.003233 CGTTCCTTCCTTAGGCCTTGT 59.997 52.381 12.58 0.00 44.37 3.16
364 372 1.278127 TCGTTCCTTCCTTAGGCCTTG 59.722 52.381 12.58 4.20 44.37 3.61
365 373 1.652947 TCGTTCCTTCCTTAGGCCTT 58.347 50.000 12.58 0.00 44.37 4.35
366 374 1.763545 GATCGTTCCTTCCTTAGGCCT 59.236 52.381 11.78 11.78 44.37 5.19
367 375 1.202663 GGATCGTTCCTTCCTTAGGCC 60.203 57.143 5.21 0.00 44.37 5.19
368 376 2.242047 GGATCGTTCCTTCCTTAGGC 57.758 55.000 5.21 0.00 44.37 3.93
412 420 3.683937 CTGCGCCTTGGGTTTGGG 61.684 66.667 4.18 0.00 0.00 4.12
413 421 4.362476 GCTGCGCCTTGGGTTTGG 62.362 66.667 4.18 0.00 0.00 3.28
452 460 1.743995 CCGGTGGATTTGGACGGTC 60.744 63.158 0.00 0.00 39.70 4.79
457 465 0.470080 TTTTGCCCGGTGGATTTGGA 60.470 50.000 0.00 0.00 0.00 3.53
459 467 0.670239 GCTTTTGCCCGGTGGATTTG 60.670 55.000 0.00 0.00 40.15 2.32
495 503 3.705604 GAGGTGTGATTTTGTTGGTGTG 58.294 45.455 0.00 0.00 0.00 3.82
504 512 1.349688 TGGGTAGCGAGGTGTGATTTT 59.650 47.619 0.00 0.00 0.00 1.82
551 559 4.760047 ATCGCTGACGTGTGGGGC 62.760 66.667 0.00 0.00 41.18 5.80
886 896 2.269241 CCTCTTCCCCTTCCGTGC 59.731 66.667 0.00 0.00 0.00 5.34
999 1010 4.181010 CTCCCCACGCTCCCCATG 62.181 72.222 0.00 0.00 0.00 3.66
1005 1016 4.803426 CTCACGCTCCCCACGCTC 62.803 72.222 0.00 0.00 0.00 5.03
1168 1205 0.602060 TGCGCCAATCAATCAAGCAA 59.398 45.000 4.18 0.00 0.00 3.91
1169 1206 0.818938 ATGCGCCAATCAATCAAGCA 59.181 45.000 4.18 0.00 37.54 3.91
1170 1207 1.205657 CATGCGCCAATCAATCAAGC 58.794 50.000 4.18 0.00 0.00 4.01
1171 1208 1.205657 GCATGCGCCAATCAATCAAG 58.794 50.000 4.18 0.00 0.00 3.02
1313 1364 3.496309 AAAAACCCCCGTCCCGTCC 62.496 63.158 0.00 0.00 0.00 4.79
1314 1365 2.113774 AAAAACCCCCGTCCCGTC 59.886 61.111 0.00 0.00 0.00 4.79
1315 1366 2.203379 CAAAAACCCCCGTCCCGT 60.203 61.111 0.00 0.00 0.00 5.28
1335 1386 4.871933 AAGAAAAAGGCATTCGATGGTT 57.128 36.364 0.00 0.00 32.04 3.67
1338 1389 7.412137 AAGAAAAAGAAAAAGGCATTCGATG 57.588 32.000 0.00 0.00 32.04 3.84
1433 1484 2.024319 GCCGCGATCTATGACAGGC 61.024 63.158 8.23 0.00 36.08 4.85
1612 1663 6.752168 AGAATCAAAATCAACCTCAACTTGG 58.248 36.000 0.00 0.00 0.00 3.61
1698 1749 8.372877 AGTTGGATCTTGGATCTATATACCAG 57.627 38.462 7.35 0.00 35.08 4.00
1705 1756 7.528543 GCATAGGAAGTTGGATCTTGGATCTAT 60.529 40.741 7.35 0.00 0.00 1.98
1724 1778 5.307196 GGAAGTTGGTAATCTAGGCATAGGA 59.693 44.000 5.42 0.00 0.00 2.94
1791 1845 7.066525 CCTCGGCCTCTGTACAAAATTAATTAA 59.933 37.037 0.00 0.00 0.00 1.40
1907 1961 1.203994 CATGCTCTGGAGGCTTTTTGG 59.796 52.381 0.00 0.00 0.00 3.28
1928 1982 3.793559 ACATAAGCATGAGGAACGTACC 58.206 45.455 0.00 0.00 35.96 3.34
1951 2006 7.538303 TCATATATAATGCTGTATGTTGGCG 57.462 36.000 0.00 0.00 0.00 5.69
2102 2157 6.016777 GGGATATGCTTCACAGAAACATAAGG 60.017 42.308 6.87 0.00 0.00 2.69
2108 2163 5.675538 ACTAGGGATATGCTTCACAGAAAC 58.324 41.667 0.00 0.00 0.00 2.78
2268 2323 7.219484 ACAAAAGTGAGGATAAAACCTGATG 57.781 36.000 0.00 0.00 40.73 3.07
2308 2363 0.321210 TCACGAATGCACGGGTCATT 60.321 50.000 6.98 6.98 37.94 2.57
2309 2364 0.321210 TTCACGAATGCACGGGTCAT 60.321 50.000 0.00 0.00 37.94 3.06
2628 2683 2.429930 CTGAGTTCCCCCGTGCAA 59.570 61.111 0.00 0.00 0.00 4.08
2871 2927 7.445402 TGCTAACTCTAGTTCATTTTTCTTGCT 59.555 33.333 0.00 0.00 39.31 3.91
3229 3289 3.941483 ACAATGAAAGATGTAGCTTCCCG 59.059 43.478 0.00 0.00 0.00 5.14
3327 3387 9.685276 ATTCAGAAATAACATACTGGAATGTGA 57.315 29.630 0.00 0.00 39.98 3.58
3616 3676 1.071071 CCTTGGGAGTAAACGGTGTCA 59.929 52.381 0.00 0.00 0.00 3.58
3666 3726 1.677552 CCTTGTGGGTAAGAGGCGT 59.322 57.895 0.00 0.00 0.00 5.68
3708 3768 1.516603 GAGTAAGAGGTGTCGCGGC 60.517 63.158 2.29 2.29 0.00 6.53
3758 3818 4.456566 ACTCTCTTAGGAGAAAGACACGAC 59.543 45.833 6.00 0.00 46.50 4.34
3818 4058 1.458927 GGGTGGTGTAGTGGGCTTT 59.541 57.895 0.00 0.00 0.00 3.51
3917 4267 2.700185 AACAGGCAGGGGTGGTGTT 61.700 57.895 0.00 0.00 0.00 3.32
3954 4304 5.812642 TGTTTTCAACTGTCTCAACTCTCTC 59.187 40.000 0.00 0.00 0.00 3.20
4089 4439 1.168714 GGAGGAACATGCACAGAACC 58.831 55.000 0.00 0.00 0.00 3.62
4205 4558 3.019564 GGGCTGACATTTAAGTGCAGAT 58.980 45.455 19.21 0.00 0.00 2.90
4206 4559 2.224744 TGGGCTGACATTTAAGTGCAGA 60.225 45.455 19.21 3.79 0.00 4.26
4487 4840 2.166459 CTCGACATGGCTCTTAGTGGAA 59.834 50.000 0.00 0.00 0.00 3.53
4510 4863 2.131776 TGGTTCCTGGTTCGTTTGTT 57.868 45.000 0.00 0.00 0.00 2.83
5525 5882 7.206789 TCCCTCCATTCACAAATACAAGATA 57.793 36.000 0.00 0.00 0.00 1.98
5878 6237 3.691118 GCACAGTCCAATATCTTGAGCAA 59.309 43.478 0.00 0.00 34.04 3.91
6020 6379 3.668656 CACACACACACAGACTGTATACG 59.331 47.826 8.02 0.00 0.00 3.06
6032 6391 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6049 6408 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6051 6410 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6053 6412 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6054 6413 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6055 6414 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6057 6416 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6058 6417 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
6059 6418 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
6060 6419 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
6061 6420 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
6062 6421 0.451383 ATGCACACACACACACACAC 59.549 50.000 0.00 0.00 0.00 3.82
6063 6422 2.029838 TATGCACACACACACACACA 57.970 45.000 0.00 0.00 0.00 3.72
6064 6423 2.547634 TCATATGCACACACACACACAC 59.452 45.455 0.00 0.00 0.00 3.82
6065 6424 2.807392 CTCATATGCACACACACACACA 59.193 45.455 0.00 0.00 0.00 3.72
6066 6425 2.413239 GCTCATATGCACACACACACAC 60.413 50.000 0.00 0.00 0.00 3.82
6067 6426 1.805943 GCTCATATGCACACACACACA 59.194 47.619 0.00 0.00 0.00 3.72
6068 6427 2.079158 AGCTCATATGCACACACACAC 58.921 47.619 0.00 0.00 34.99 3.82
6069 6428 2.477845 AGCTCATATGCACACACACA 57.522 45.000 0.00 0.00 34.99 3.72
6070 6429 2.730090 GCAAGCTCATATGCACACACAC 60.730 50.000 3.21 0.00 42.12 3.82
6071 6430 1.469703 GCAAGCTCATATGCACACACA 59.530 47.619 3.21 0.00 42.12 3.72
6072 6431 1.202222 GGCAAGCTCATATGCACACAC 60.202 52.381 10.14 0.00 44.32 3.82
6073 6432 1.097232 GGCAAGCTCATATGCACACA 58.903 50.000 10.14 0.00 44.32 3.72
6074 6433 1.386533 AGGCAAGCTCATATGCACAC 58.613 50.000 10.14 0.00 44.32 3.82
6075 6434 2.133281 AAGGCAAGCTCATATGCACA 57.867 45.000 10.14 0.00 44.32 4.57
6076 6435 5.618640 GCTTATAAGGCAAGCTCATATGCAC 60.619 44.000 14.28 0.42 44.04 4.57
6077 6436 4.456911 GCTTATAAGGCAAGCTCATATGCA 59.543 41.667 14.28 0.00 44.04 3.96
6659 7018 4.429505 CCTCCTATCATATCCAGGTCCAA 58.570 47.826 0.00 0.00 0.00 3.53
6770 7225 2.749621 GCAAGATCTACCACCCAAACAG 59.250 50.000 0.00 0.00 0.00 3.16
6795 7250 4.172512 AGGGGCTGCATCGCTGAG 62.173 66.667 0.50 0.00 0.00 3.35
6971 7429 0.606604 TCCTCTACGAAGCCCACAAC 59.393 55.000 0.00 0.00 0.00 3.32
7012 7470 0.037447 GCAAGGCTGGGAGAAGAGTT 59.963 55.000 0.00 0.00 0.00 3.01
7049 7507 0.820226 TGGAGGAGCATCAAGTCTCG 59.180 55.000 0.00 0.00 36.25 4.04
7265 7759 7.574592 GCACCTTATCATGCTTGATATCCTTTC 60.575 40.741 19.65 7.46 42.86 2.62
7307 7801 7.039784 TGGAGAAAATGGGAATACTGAAACAAG 60.040 37.037 0.00 0.00 0.00 3.16
7386 7880 3.192944 TGGAGACCCAGAGATCCAAAAT 58.807 45.455 0.00 0.00 38.86 1.82
7444 7938 3.555917 ATCGGAAGTACTAGCATACGC 57.444 47.619 0.00 0.00 38.99 4.42
7545 8040 5.011023 ACAAAGGCAAAAGATAAGGGTTCAG 59.989 40.000 0.00 0.00 0.00 3.02
7607 8103 4.717279 AACAGTCCCTTGCCTTTTACTA 57.283 40.909 0.00 0.00 0.00 1.82
7608 8104 3.595190 AACAGTCCCTTGCCTTTTACT 57.405 42.857 0.00 0.00 0.00 2.24
7609 8105 4.665833 AAAACAGTCCCTTGCCTTTTAC 57.334 40.909 0.00 0.00 0.00 2.01
7656 8152 8.123639 TGCTACTGAAAAGAGTCTGTAGTAAT 57.876 34.615 15.96 0.00 45.11 1.89
7867 8370 0.796312 CCGATTCCACTTCCACGTTG 59.204 55.000 0.00 0.00 0.00 4.10
8075 8578 1.521616 CTTCCTGCTGCCCTCTCTC 59.478 63.158 0.00 0.00 0.00 3.20
8161 8664 1.150536 GTTGAGGGCAGGACAACCA 59.849 57.895 0.00 0.00 38.20 3.67
8257 8760 2.510464 ACGCACGCACACAAGACA 60.510 55.556 0.00 0.00 0.00 3.41
8348 8903 2.028112 AGCTTCGAGCCAATACACTGAA 60.028 45.455 3.66 0.00 43.77 3.02
8349 8904 1.550524 AGCTTCGAGCCAATACACTGA 59.449 47.619 3.66 0.00 43.77 3.41
8350 8905 1.662629 CAGCTTCGAGCCAATACACTG 59.337 52.381 3.66 0.00 43.77 3.66
8351 8906 1.550524 TCAGCTTCGAGCCAATACACT 59.449 47.619 3.66 0.00 43.77 3.55
8352 8907 2.010145 TCAGCTTCGAGCCAATACAC 57.990 50.000 3.66 0.00 43.77 2.90
8353 8908 2.760634 TTCAGCTTCGAGCCAATACA 57.239 45.000 3.66 0.00 43.77 2.29
8354 8909 3.188460 TGTTTTCAGCTTCGAGCCAATAC 59.812 43.478 3.66 4.14 43.77 1.89
8355 8910 3.407698 TGTTTTCAGCTTCGAGCCAATA 58.592 40.909 3.66 0.00 43.77 1.90
8356 8911 2.227388 CTGTTTTCAGCTTCGAGCCAAT 59.773 45.455 3.66 0.00 43.77 3.16
8357 8912 1.603802 CTGTTTTCAGCTTCGAGCCAA 59.396 47.619 3.66 0.00 43.77 4.52
8358 8913 1.229428 CTGTTTTCAGCTTCGAGCCA 58.771 50.000 3.66 0.00 43.77 4.75
8359 8914 0.519077 CCTGTTTTCAGCTTCGAGCC 59.481 55.000 3.66 0.00 43.77 4.70
8360 8915 1.230324 ACCTGTTTTCAGCTTCGAGC 58.770 50.000 0.00 0.00 45.76 5.03
8361 8916 3.390135 TGTACCTGTTTTCAGCTTCGAG 58.610 45.455 0.00 0.00 45.76 4.04
8362 8917 3.462483 TGTACCTGTTTTCAGCTTCGA 57.538 42.857 0.00 0.00 45.76 3.71
8363 8918 4.035208 ACTTTGTACCTGTTTTCAGCTTCG 59.965 41.667 0.00 0.00 45.76 3.79
8364 8919 5.500645 ACTTTGTACCTGTTTTCAGCTTC 57.499 39.130 0.00 0.00 45.76 3.86
8365 8920 4.035208 CGACTTTGTACCTGTTTTCAGCTT 59.965 41.667 0.00 0.00 45.76 3.74
8366 8921 3.560068 CGACTTTGTACCTGTTTTCAGCT 59.440 43.478 0.00 0.00 45.76 4.24
8367 8922 3.558418 TCGACTTTGTACCTGTTTTCAGC 59.442 43.478 0.00 0.00 45.76 4.26
8368 8923 5.728351 TTCGACTTTGTACCTGTTTTCAG 57.272 39.130 0.00 0.00 46.60 3.02
8369 8924 6.987992 ACTATTCGACTTTGTACCTGTTTTCA 59.012 34.615 0.00 0.00 0.00 2.69
8370 8925 7.170320 TGACTATTCGACTTTGTACCTGTTTTC 59.830 37.037 0.00 0.00 0.00 2.29
8371 8926 6.987992 TGACTATTCGACTTTGTACCTGTTTT 59.012 34.615 0.00 0.00 0.00 2.43
8372 8927 6.518493 TGACTATTCGACTTTGTACCTGTTT 58.482 36.000 0.00 0.00 0.00 2.83
8373 8928 6.092955 TGACTATTCGACTTTGTACCTGTT 57.907 37.500 0.00 0.00 0.00 3.16
8374 8929 5.243283 ACTGACTATTCGACTTTGTACCTGT 59.757 40.000 0.00 0.00 0.00 4.00
8375 8930 5.710984 ACTGACTATTCGACTTTGTACCTG 58.289 41.667 0.00 0.00 0.00 4.00
8376 8931 5.391736 CGACTGACTATTCGACTTTGTACCT 60.392 44.000 0.00 0.00 37.43 3.08
8377 8932 4.792189 CGACTGACTATTCGACTTTGTACC 59.208 45.833 0.00 0.00 37.43 3.34
8378 8933 4.792189 CCGACTGACTATTCGACTTTGTAC 59.208 45.833 0.00 0.00 37.43 2.90
8379 8934 4.696877 TCCGACTGACTATTCGACTTTGTA 59.303 41.667 0.00 0.00 37.43 2.41
8380 8935 3.504906 TCCGACTGACTATTCGACTTTGT 59.495 43.478 0.00 0.00 37.43 2.83
8381 8936 4.092771 TCCGACTGACTATTCGACTTTG 57.907 45.455 0.00 0.00 37.43 2.77
8382 8937 4.985538 ATCCGACTGACTATTCGACTTT 57.014 40.909 0.00 0.00 37.43 2.66
8383 8938 7.741027 TTATATCCGACTGACTATTCGACTT 57.259 36.000 0.00 0.00 37.43 3.01
8384 8939 7.925043 ATTATATCCGACTGACTATTCGACT 57.075 36.000 0.00 0.00 37.43 4.18
8385 8940 8.452534 AGAATTATATCCGACTGACTATTCGAC 58.547 37.037 0.00 0.00 37.43 4.20
8386 8941 8.563123 AGAATTATATCCGACTGACTATTCGA 57.437 34.615 0.00 0.00 37.43 3.71
8410 8965 4.803098 GGCCCACCTAGTACATACATAG 57.197 50.000 0.00 0.00 0.00 2.23
8425 8980 3.343941 TTGACATAACACTAGGCCCAC 57.656 47.619 0.00 0.00 0.00 4.61
8471 9027 2.742053 CCATGTTGTCCCTTGTTACTCG 59.258 50.000 0.00 0.00 0.00 4.18
8482 9041 3.568007 TGTTTCTGCTAACCATGTTGTCC 59.432 43.478 0.00 0.00 0.00 4.02
8497 9056 2.987413 TAAAGGCGCATGTGTTTCTG 57.013 45.000 10.83 0.00 0.00 3.02
8498 9057 3.081061 TGATAAAGGCGCATGTGTTTCT 58.919 40.909 10.83 0.88 0.00 2.52
8499 9058 3.485947 TGATAAAGGCGCATGTGTTTC 57.514 42.857 10.83 0.00 0.00 2.78
8510 9136 5.627499 TGTTTCTGTGTGATGATAAAGGC 57.373 39.130 0.00 0.00 0.00 4.35
8512 9138 6.887368 TCGTTGTTTCTGTGTGATGATAAAG 58.113 36.000 0.00 0.00 0.00 1.85
8527 9154 3.175152 TGTGTGCACAATTCGTTGTTTC 58.825 40.909 23.59 4.84 38.56 2.78
8541 9168 9.803315 TGTACAAGTAATTTTTATTTGTGTGCA 57.197 25.926 14.62 9.79 34.22 4.57
8589 9226 8.969121 TTTATGTTTGAATTATGCACTGTGAG 57.031 30.769 12.86 0.00 0.00 3.51
8617 9254 3.630769 ACGACGGAATCAGCTAACTATGA 59.369 43.478 0.00 0.00 0.00 2.15
8703 9341 5.623824 GCCAACTTTCTTGAGATGCATCAAT 60.624 40.000 27.81 8.91 38.47 2.57
8782 9429 1.452108 GGATGAGGGCGAAGGGTTG 60.452 63.158 0.00 0.00 0.00 3.77
8783 9430 1.616628 AGGATGAGGGCGAAGGGTT 60.617 57.895 0.00 0.00 0.00 4.11
8784 9431 2.041265 AGGATGAGGGCGAAGGGT 59.959 61.111 0.00 0.00 0.00 4.34
8801 9449 7.663493 TGTAATCTTGTACAACATGATTGTGGA 59.337 33.333 22.40 9.52 46.10 4.02
8817 9465 6.260050 ACTCACGACATGTTTTGTAATCTTGT 59.740 34.615 0.00 0.00 39.18 3.16
8821 9469 6.427150 ACAACTCACGACATGTTTTGTAATC 58.573 36.000 0.00 0.00 39.18 1.75
8837 9485 6.422223 CAACTCACATACTTTGACAACTCAC 58.578 40.000 0.00 0.00 0.00 3.51
8855 9503 1.774217 AGGGTGAAGGGGCAACTCA 60.774 57.895 0.00 0.00 42.85 3.41
8856 9504 1.002011 GAGGGTGAAGGGGCAACTC 60.002 63.158 0.00 0.00 37.29 3.01
8857 9505 1.142688 ATGAGGGTGAAGGGGCAACT 61.143 55.000 0.00 0.00 0.00 3.16
8869 9517 1.971149 TGATTGTGGAGGATGAGGGT 58.029 50.000 0.00 0.00 0.00 4.34
8998 9646 2.769095 GCTAGAAAGGATGTGGAGAGGT 59.231 50.000 0.00 0.00 0.00 3.85
9043 9691 6.018425 CGATCCTCATGGTAGAAAACAATCTG 60.018 42.308 0.00 0.00 34.23 2.90
9088 9737 4.422057 TGGTATCTATCCTTAATGGGCGA 58.578 43.478 0.00 0.00 36.20 5.54
9097 9746 6.831664 ACCTTGTTGATGGTATCTATCCTT 57.168 37.500 0.00 0.00 34.36 3.36
9135 9784 2.101249 ACATTGTCAAAGGGCACAACTG 59.899 45.455 0.00 0.00 35.37 3.16
9165 9814 0.547471 TGTGATGGGGAGGCTTCAGA 60.547 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.