Multiple sequence alignment - TraesCS4A01G054700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G054700 chr4A 100.000 5231 0 0 1 5231 45876733 45871503 0.000000e+00 9660.0
1 TraesCS4A01G054700 chr5D 94.629 2439 76 21 2260 4664 388384410 388381993 0.000000e+00 3727.0
2 TraesCS4A01G054700 chr5D 92.707 1193 68 9 1421 2597 353971270 353970081 0.000000e+00 1703.0
3 TraesCS4A01G054700 chr5D 96.310 840 29 2 1423 2260 388385317 388384478 0.000000e+00 1378.0
4 TraesCS4A01G054700 chr5D 83.692 1300 133 33 2583 3820 388598110 388596828 0.000000e+00 1153.0
5 TraesCS4A01G054700 chr5D 85.569 1081 92 28 3214 4234 353956599 353955523 0.000000e+00 1074.0
6 TraesCS4A01G054700 chr5D 85.686 1013 102 21 2583 3580 353970065 353969081 0.000000e+00 1027.0
7 TraesCS4A01G054700 chr5D 88.551 856 64 15 1421 2244 353967459 353966606 0.000000e+00 1007.0
8 TraesCS4A01G054700 chr5D 85.998 857 62 22 1421 2244 388599276 388598445 0.000000e+00 865.0
9 TraesCS4A01G054700 chr5D 90.125 638 49 6 2583 3217 353959665 353959039 0.000000e+00 817.0
10 TraesCS4A01G054700 chr5D 90.948 464 34 5 3786 4249 353968748 353968293 7.440000e-173 617.0
11 TraesCS4A01G054700 chr5D 87.453 534 50 10 4678 5201 388592953 388592427 2.700000e-167 599.0
12 TraesCS4A01G054700 chr5D 87.928 497 44 7 520 1010 353950378 353949892 5.880000e-159 571.0
13 TraesCS4A01G054700 chr5D 90.205 439 26 4 4678 5105 388381810 388381378 1.650000e-154 556.0
14 TraesCS4A01G054700 chr5D 90.610 426 29 5 3814 4235 388596722 388596304 5.920000e-154 555.0
15 TraesCS4A01G054700 chr5D 83.582 603 56 23 847 1420 353968163 353967575 4.640000e-145 525.0
16 TraesCS4A01G054700 chr5D 89.412 425 31 4 4678 5097 388412869 388412454 1.670000e-144 523.0
17 TraesCS4A01G054700 chr5D 87.500 464 27 9 376 832 353972019 353971580 1.680000e-139 507.0
18 TraesCS4A01G054700 chr5D 88.889 414 29 5 1030 1426 388599811 388599398 1.310000e-135 494.0
19 TraesCS4A01G054700 chr5D 92.812 320 21 2 2279 2597 388598444 388598126 3.690000e-126 462.0
20 TraesCS4A01G054700 chr5D 81.307 551 49 26 374 919 388386396 388385895 1.060000e-106 398.0
21 TraesCS4A01G054700 chr5D 91.845 233 8 2 1030 1251 388385773 388385541 1.090000e-81 315.0
22 TraesCS4A01G054700 chr5D 95.082 183 8 1 2283 2464 353966601 353966419 2.380000e-73 287.0
23 TraesCS4A01G054700 chr5D 85.616 292 17 9 4257 4535 353955291 353955012 3.080000e-72 283.0
24 TraesCS4A01G054700 chr5D 93.407 182 11 1 1245 1426 353971577 353971397 8.630000e-68 268.0
25 TraesCS4A01G054700 chr5D 83.916 286 22 7 4257 4531 388596238 388595966 8.700000e-63 252.0
26 TraesCS4A01G054700 chr5D 91.176 136 8 3 374 509 388388233 388388102 1.160000e-41 182.0
27 TraesCS4A01G054700 chr5D 91.176 136 8 3 374 509 388390070 388389939 1.160000e-41 182.0
28 TraesCS4A01G054700 chr5D 85.987 157 10 7 4439 4583 386959740 386959584 1.950000e-34 158.0
29 TraesCS4A01G054700 chr5D 96.203 79 3 0 1030 1108 353949837 353949759 4.250000e-26 130.0
30 TraesCS4A01G054700 chr5D 98.571 70 1 0 1357 1426 388385515 388385446 1.980000e-24 124.0
31 TraesCS4A01G054700 chr5D 86.290 124 2 2 405 527 353951510 353951401 2.560000e-23 121.0
32 TraesCS4A01G054700 chr5D 97.436 39 1 0 5193 5231 388592397 388592359 3.380000e-07 67.6
33 TraesCS4A01G054700 chr4B 90.214 1216 93 13 2583 3781 31870520 31871726 0.000000e+00 1563.0
34 TraesCS4A01G054700 chr4B 89.392 839 78 6 2743 3577 356000152 356000983 0.000000e+00 1046.0
35 TraesCS4A01G054700 chr4B 88.050 795 71 12 1471 2244 31869370 31870161 0.000000e+00 920.0
36 TraesCS4A01G054700 chr4B 91.702 470 32 5 3787 4249 31871779 31872248 0.000000e+00 645.0
37 TraesCS4A01G054700 chr4B 87.685 406 32 7 1032 1419 31866715 31867120 1.720000e-124 457.0
38 TraesCS4A01G054700 chr4B 92.364 275 18 3 2288 2560 31870166 31870439 6.350000e-104 388.0
39 TraesCS4A01G054700 chr4B 92.135 178 9 3 3139 3315 581609472 581609299 4.050000e-61 246.0
40 TraesCS4A01G054700 chr5A 92.330 1043 66 8 3645 4678 491571017 491569980 0.000000e+00 1471.0
41 TraesCS4A01G054700 chr5A 86.520 1276 120 21 2583 3820 491587540 491586279 0.000000e+00 1356.0
42 TraesCS4A01G054700 chr5A 88.586 955 66 19 2283 3213 491572084 491571149 0.000000e+00 1120.0
43 TraesCS4A01G054700 chr5A 87.089 852 71 20 1421 2244 491588715 491587875 0.000000e+00 928.0
44 TraesCS4A01G054700 chr5A 85.747 863 76 25 1421 2244 491572943 491572089 0.000000e+00 869.0
45 TraesCS4A01G054700 chr5A 89.641 502 35 5 4714 5198 491585012 491584511 1.600000e-174 623.0
46 TraesCS4A01G054700 chr5A 88.911 496 29 7 407 896 491574058 491573583 5.840000e-164 588.0
47 TraesCS4A01G054700 chr5A 90.724 442 27 3 4678 5105 491569931 491569490 1.260000e-160 577.0
48 TraesCS4A01G054700 chr5A 86.817 531 38 15 4678 5182 489678471 489677947 9.830000e-157 564.0
49 TraesCS4A01G054700 chr5A 90.376 426 30 6 3814 4235 491586184 491585766 2.750000e-152 549.0
50 TraesCS4A01G054700 chr5A 90.709 409 37 1 1014 1421 491573483 491573075 1.280000e-150 544.0
51 TraesCS4A01G054700 chr5A 86.064 531 42 12 4678 5182 489662547 489662023 4.610000e-150 542.0
52 TraesCS4A01G054700 chr5A 93.038 316 20 2 2283 2597 491587870 491587556 1.330000e-125 460.0
53 TraesCS4A01G054700 chr5A 87.019 416 35 7 1030 1426 491589220 491588805 7.990000e-123 451.0
54 TraesCS4A01G054700 chr5A 94.915 118 6 0 5114 5231 491569451 491569334 8.950000e-43 185.0
55 TraesCS4A01G054700 chr5A 85.106 141 6 8 4439 4565 489678689 489678550 4.250000e-26 130.0
56 TraesCS4A01G054700 chr5A 89.888 89 5 3 4498 4582 489682885 489682797 1.540000e-20 111.0
57 TraesCS4A01G054700 chr5A 90.541 74 3 1 942 1011 491573586 491573513 1.550000e-15 95.3
58 TraesCS4A01G054700 chr5B 87.313 938 79 19 2283 3188 467023277 467022348 0.000000e+00 1037.0
59 TraesCS4A01G054700 chr5B 88.759 854 64 16 1421 2244 467024133 467023282 0.000000e+00 1016.0
60 TraesCS4A01G054700 chr5B 88.091 529 35 12 4678 5182 467020417 467019893 2.080000e-168 603.0
61 TraesCS4A01G054700 chr5B 89.835 423 35 5 3814 4235 467021644 467021229 2.140000e-148 536.0
62 TraesCS4A01G054700 chr5B 89.250 400 42 1 1027 1426 467024654 467024256 2.810000e-137 499.0
63 TraesCS4A01G054700 chr5B 83.877 552 36 15 4678 5182 465054901 465054356 1.320000e-130 477.0
64 TraesCS4A01G054700 chr5B 90.551 127 10 2 4257 4382 467021163 467021038 3.240000e-37 167.0
65 TraesCS4A01G054700 chr5B 85.106 141 6 8 4439 4565 465055118 465054979 4.250000e-26 130.0
66 TraesCS4A01G054700 chr5B 97.222 36 1 0 5196 5231 467019843 467019808 1.570000e-05 62.1
67 TraesCS4A01G054700 chr4D 93.573 389 20 5 1 387 460947003 460947388 4.540000e-160 575.0
68 TraesCS4A01G054700 chr2D 93.590 390 18 6 1 387 470667102 470667487 4.540000e-160 575.0
69 TraesCS4A01G054700 chr6B 91.560 391 29 4 3189 3577 16473240 16472852 2.140000e-148 536.0
70 TraesCS4A01G054700 chr6B 84.010 394 35 6 3183 3575 445509938 445510304 2.320000e-93 353.0
71 TraesCS4A01G054700 chr6A 85.199 554 46 19 4678 5201 130413854 130413307 2.140000e-148 536.0
72 TraesCS4A01G054700 chr6A 89.974 389 33 3 1 387 446794849 446795233 1.010000e-136 497.0
73 TraesCS4A01G054700 chr7A 90.231 389 31 4 1 387 621554787 621554404 7.820000e-138 501.0
74 TraesCS4A01G054700 chr7D 86.560 439 38 9 4678 5105 437593206 437592778 1.030000e-126 464.0
75 TraesCS4A01G054700 chr3D 78.141 581 78 21 3003 3580 554067652 554067118 1.820000e-84 324.0
76 TraesCS4A01G054700 chr3D 87.029 239 22 5 2495 2726 99195468 99195232 1.440000e-65 261.0
77 TraesCS4A01G054700 chr3D 86.611 239 23 5 2495 2726 350636148 350636384 6.720000e-64 255.0
78 TraesCS4A01G054700 chr6D 78.249 354 73 4 6 356 459105021 459104669 1.900000e-54 224.0
79 TraesCS4A01G054700 chr6D 92.391 92 3 3 4495 4582 60555646 60555737 1.530000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G054700 chr4A 45871503 45876733 5230 True 9660.000000 9660 100.000000 1 5231 1 chr4A.!!$R1 5230
1 TraesCS4A01G054700 chr5D 388381378 388390070 8692 True 857.750000 3727 91.902375 374 5105 8 chr5D.!!$R5 4731
2 TraesCS4A01G054700 chr5D 353966419 353972019 5600 True 742.625000 1703 89.682875 376 4249 8 chr5D.!!$R4 3873
3 TraesCS4A01G054700 chr5D 388592359 388599811 7452 True 555.950000 1153 88.850750 1030 5231 8 chr5D.!!$R6 4201
4 TraesCS4A01G054700 chr5D 353949759 353959665 9906 True 499.333333 1074 88.621833 405 4535 6 chr5D.!!$R3 4130
5 TraesCS4A01G054700 chr4B 356000152 356000983 831 False 1046.000000 1046 89.392000 2743 3577 1 chr4B.!!$F1 834
6 TraesCS4A01G054700 chr4B 31866715 31872248 5533 False 794.600000 1563 90.003000 1032 4249 5 chr4B.!!$F2 3217
7 TraesCS4A01G054700 chr5A 491584511 491589220 4709 True 727.833333 1356 88.947167 1030 5198 6 chr5A.!!$R5 4168
8 TraesCS4A01G054700 chr5A 491569334 491574058 4724 True 681.162500 1471 90.307875 407 5231 8 chr5A.!!$R4 4824
9 TraesCS4A01G054700 chr5A 489662023 489662547 524 True 542.000000 542 86.064000 4678 5182 1 chr5A.!!$R1 504
10 TraesCS4A01G054700 chr5A 489677947 489678689 742 True 347.000000 564 85.961500 4439 5182 2 chr5A.!!$R3 743
11 TraesCS4A01G054700 chr5B 467019808 467024654 4846 True 560.014286 1037 90.145857 1027 5231 7 chr5B.!!$R2 4204
12 TraesCS4A01G054700 chr5B 465054356 465055118 762 True 303.500000 477 84.491500 4439 5182 2 chr5B.!!$R1 743
13 TraesCS4A01G054700 chr6A 130413307 130413854 547 True 536.000000 536 85.199000 4678 5201 1 chr6A.!!$R1 523
14 TraesCS4A01G054700 chr3D 554067118 554067652 534 True 324.000000 324 78.141000 3003 3580 1 chr3D.!!$R2 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 336 0.034089 ACAGCCCTTAACTGCATCCC 60.034 55.0 0.00 0.00 38.79 3.85 F
348 349 0.179000 GCATCCCTGACTACTGTGGG 59.821 60.0 0.00 0.00 40.95 4.61 F
349 350 0.179000 CATCCCTGACTACTGTGGGC 59.821 60.0 0.00 0.00 39.49 5.36 F
350 351 0.252696 ATCCCTGACTACTGTGGGCA 60.253 55.0 0.00 0.00 39.49 5.36 F
459 463 0.401250 AACCCACCAAGGCCCAAAAT 60.401 50.0 0.00 0.00 35.39 1.82 F
1643 7595 0.681175 GAAGCCTGGTGCAAACCATT 59.319 50.0 0.00 0.00 44.83 3.16 F
2446 8506 0.896019 CACGAGTGAGGGTCCTGACT 60.896 60.0 8.83 8.83 42.91 3.41 F
3045 9189 1.986882 AGCAGTCAGAAAACCCAAGG 58.013 50.0 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1157 4879 0.330604 AGCAGGTCGTGGTAGTAGGA 59.669 55.000 0.00 0.0 34.15 2.94 R
1780 7732 1.732259 GTTGTGCTCTATCAACGGTGG 59.268 52.381 0.00 0.0 35.41 4.61 R
2348 8408 3.303938 AGCTGATCTGGCTGTAGTATGT 58.696 45.455 11.77 0.0 38.73 2.29 R
2359 8419 5.877012 TCTAGCAAGTAAAAAGCTGATCTGG 59.123 40.000 1.46 0.0 39.30 3.86 R
2446 8506 1.977854 ACTATGTGGCTCACCTGTTGA 59.022 47.619 0.00 0.0 36.63 3.18 R
3045 9189 2.935201 GTGCATGACTTCAGATCCTCAC 59.065 50.000 0.00 0.0 0.00 3.51 R
3909 12862 1.832167 TTGCTTGGCTGGGGTGTTC 60.832 57.895 0.00 0.0 0.00 3.18 R
4918 17655 0.802494 GCGAGATTTTGGAAAGGCGA 59.198 50.000 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.900888 TCACCTCCCAAGACACCC 58.099 61.111 0.00 0.00 0.00 4.61
18 19 1.074090 TCACCTCCCAAGACACCCA 60.074 57.895 0.00 0.00 0.00 4.51
19 20 0.696143 TCACCTCCCAAGACACCCAA 60.696 55.000 0.00 0.00 0.00 4.12
20 21 0.250901 CACCTCCCAAGACACCCAAG 60.251 60.000 0.00 0.00 0.00 3.61
21 22 1.303643 CCTCCCAAGACACCCAAGC 60.304 63.158 0.00 0.00 0.00 4.01
22 23 1.763770 CTCCCAAGACACCCAAGCT 59.236 57.895 0.00 0.00 0.00 3.74
23 24 0.607489 CTCCCAAGACACCCAAGCTG 60.607 60.000 0.00 0.00 0.00 4.24
24 25 1.604593 CCCAAGACACCCAAGCTGG 60.605 63.158 0.00 0.00 37.25 4.85
25 26 1.151450 CCAAGACACCCAAGCTGGT 59.849 57.895 0.00 0.00 39.96 4.00
26 27 0.468029 CCAAGACACCCAAGCTGGTT 60.468 55.000 0.00 0.00 36.12 3.67
27 28 1.402787 CAAGACACCCAAGCTGGTTT 58.597 50.000 0.00 0.00 36.12 3.27
28 29 1.756538 CAAGACACCCAAGCTGGTTTT 59.243 47.619 0.00 0.00 36.12 2.43
29 30 1.692411 AGACACCCAAGCTGGTTTTC 58.308 50.000 0.00 0.00 36.12 2.29
30 31 1.215423 AGACACCCAAGCTGGTTTTCT 59.785 47.619 0.00 0.00 36.12 2.52
31 32 2.441750 AGACACCCAAGCTGGTTTTCTA 59.558 45.455 0.00 0.00 36.12 2.10
32 33 3.074538 AGACACCCAAGCTGGTTTTCTAT 59.925 43.478 0.00 0.00 36.12 1.98
33 34 3.157087 ACACCCAAGCTGGTTTTCTATG 58.843 45.455 0.00 0.00 36.12 2.23
34 35 2.493278 CACCCAAGCTGGTTTTCTATGG 59.507 50.000 0.00 0.00 36.12 2.74
35 36 1.478105 CCCAAGCTGGTTTTCTATGGC 59.522 52.381 0.00 0.00 35.17 4.40
36 37 1.478105 CCAAGCTGGTTTTCTATGGCC 59.522 52.381 0.00 0.00 31.35 5.36
37 38 1.478105 CAAGCTGGTTTTCTATGGCCC 59.522 52.381 0.00 0.00 0.00 5.80
38 39 1.002857 AGCTGGTTTTCTATGGCCCT 58.997 50.000 0.00 0.00 0.00 5.19
39 40 1.106285 GCTGGTTTTCTATGGCCCTG 58.894 55.000 0.00 0.00 0.00 4.45
40 41 1.106285 CTGGTTTTCTATGGCCCTGC 58.894 55.000 0.00 0.00 0.00 4.85
41 42 0.704076 TGGTTTTCTATGGCCCTGCT 59.296 50.000 0.00 0.00 0.00 4.24
42 43 1.077005 TGGTTTTCTATGGCCCTGCTT 59.923 47.619 0.00 0.00 0.00 3.91
43 44 1.478105 GGTTTTCTATGGCCCTGCTTG 59.522 52.381 0.00 0.00 0.00 4.01
44 45 1.134995 GTTTTCTATGGCCCTGCTTGC 60.135 52.381 0.00 0.00 0.00 4.01
45 46 0.039472 TTTCTATGGCCCTGCTTGCA 59.961 50.000 0.00 0.00 0.00 4.08
46 47 0.259647 TTCTATGGCCCTGCTTGCAT 59.740 50.000 0.00 0.00 0.00 3.96
47 48 0.179009 TCTATGGCCCTGCTTGCATC 60.179 55.000 0.00 0.00 0.00 3.91
48 49 1.152694 TATGGCCCTGCTTGCATCC 60.153 57.895 0.00 0.00 0.00 3.51
49 50 2.645394 TATGGCCCTGCTTGCATCCC 62.645 60.000 0.00 0.00 0.00 3.85
51 52 4.764771 GCCCTGCTTGCATCCCCA 62.765 66.667 0.00 0.00 0.00 4.96
52 53 2.757099 CCCTGCTTGCATCCCCAC 60.757 66.667 0.00 0.00 0.00 4.61
53 54 2.357836 CCTGCTTGCATCCCCACT 59.642 61.111 0.00 0.00 0.00 4.00
54 55 1.609239 CCTGCTTGCATCCCCACTA 59.391 57.895 0.00 0.00 0.00 2.74
55 56 0.465097 CCTGCTTGCATCCCCACTAG 60.465 60.000 0.00 0.00 0.00 2.57
56 57 0.543277 CTGCTTGCATCCCCACTAGA 59.457 55.000 0.00 0.00 0.00 2.43
57 58 0.991146 TGCTTGCATCCCCACTAGAA 59.009 50.000 0.00 0.00 0.00 2.10
58 59 1.565759 TGCTTGCATCCCCACTAGAAT 59.434 47.619 0.00 0.00 0.00 2.40
59 60 2.025037 TGCTTGCATCCCCACTAGAATT 60.025 45.455 0.00 0.00 0.00 2.17
60 61 3.026694 GCTTGCATCCCCACTAGAATTT 58.973 45.455 0.00 0.00 0.00 1.82
61 62 3.448660 GCTTGCATCCCCACTAGAATTTT 59.551 43.478 0.00 0.00 0.00 1.82
62 63 4.440663 GCTTGCATCCCCACTAGAATTTTC 60.441 45.833 0.00 0.00 0.00 2.29
63 64 4.591321 TGCATCCCCACTAGAATTTTCT 57.409 40.909 0.00 0.00 41.24 2.52
64 65 4.934356 TGCATCCCCACTAGAATTTTCTT 58.066 39.130 0.00 0.00 38.70 2.52
65 66 6.073447 TGCATCCCCACTAGAATTTTCTTA 57.927 37.500 0.00 0.00 38.70 2.10
66 67 6.672593 TGCATCCCCACTAGAATTTTCTTAT 58.327 36.000 0.00 0.00 38.70 1.73
67 68 6.547141 TGCATCCCCACTAGAATTTTCTTATG 59.453 38.462 0.00 0.00 38.70 1.90
68 69 6.772716 GCATCCCCACTAGAATTTTCTTATGA 59.227 38.462 0.00 0.00 38.70 2.15
69 70 7.449704 GCATCCCCACTAGAATTTTCTTATGAT 59.550 37.037 0.00 0.00 38.70 2.45
70 71 8.790718 CATCCCCACTAGAATTTTCTTATGATG 58.209 37.037 0.00 0.00 38.70 3.07
71 72 7.290061 TCCCCACTAGAATTTTCTTATGATGG 58.710 38.462 0.00 0.93 38.70 3.51
72 73 7.128728 TCCCCACTAGAATTTTCTTATGATGGA 59.871 37.037 0.00 4.98 38.70 3.41
73 74 7.446625 CCCCACTAGAATTTTCTTATGATGGAG 59.553 40.741 0.00 0.00 38.70 3.86
74 75 7.995488 CCCACTAGAATTTTCTTATGATGGAGT 59.005 37.037 0.00 0.00 38.70 3.85
75 76 9.401058 CCACTAGAATTTTCTTATGATGGAGTT 57.599 33.333 0.00 0.00 38.70 3.01
87 88 9.904198 TCTTATGATGGAGTTCAAATGATTACA 57.096 29.630 0.00 0.00 0.00 2.41
91 92 9.857656 ATGATGGAGTTCAAATGATTACATAGT 57.142 29.630 0.00 0.00 35.50 2.12
92 93 9.330063 TGATGGAGTTCAAATGATTACATAGTC 57.670 33.333 0.00 0.00 35.50 2.59
93 94 8.682936 ATGGAGTTCAAATGATTACATAGTCC 57.317 34.615 0.00 0.00 35.50 3.85
94 95 7.861629 TGGAGTTCAAATGATTACATAGTCCT 58.138 34.615 0.00 0.00 34.48 3.85
95 96 7.987458 TGGAGTTCAAATGATTACATAGTCCTC 59.013 37.037 0.00 0.00 34.48 3.71
96 97 8.207545 GGAGTTCAAATGATTACATAGTCCTCT 58.792 37.037 0.00 0.00 35.50 3.69
97 98 9.255304 GAGTTCAAATGATTACATAGTCCTCTC 57.745 37.037 0.00 0.00 35.50 3.20
98 99 7.923344 AGTTCAAATGATTACATAGTCCTCTCG 59.077 37.037 0.00 0.00 35.50 4.04
99 100 6.749139 TCAAATGATTACATAGTCCTCTCGG 58.251 40.000 0.00 0.00 35.50 4.63
100 101 5.730296 AATGATTACATAGTCCTCTCGGG 57.270 43.478 0.00 0.00 35.50 5.14
101 102 4.448720 TGATTACATAGTCCTCTCGGGA 57.551 45.455 0.00 0.00 42.77 5.14
102 103 4.399219 TGATTACATAGTCCTCTCGGGAG 58.601 47.826 4.93 4.93 46.10 4.30
103 104 2.273538 TACATAGTCCTCTCGGGAGC 57.726 55.000 6.84 0.00 46.10 4.70
104 105 0.553819 ACATAGTCCTCTCGGGAGCT 59.446 55.000 6.84 1.75 46.10 4.09
105 106 1.063567 ACATAGTCCTCTCGGGAGCTT 60.064 52.381 6.84 0.00 46.10 3.74
106 107 2.175069 ACATAGTCCTCTCGGGAGCTTA 59.825 50.000 6.84 0.00 46.10 3.09
107 108 3.223435 CATAGTCCTCTCGGGAGCTTAA 58.777 50.000 6.84 0.00 46.10 1.85
108 109 2.233305 AGTCCTCTCGGGAGCTTAAA 57.767 50.000 6.84 0.00 46.10 1.52
109 110 2.537143 AGTCCTCTCGGGAGCTTAAAA 58.463 47.619 6.84 0.00 46.10 1.52
110 111 2.234168 AGTCCTCTCGGGAGCTTAAAAC 59.766 50.000 6.84 0.00 46.10 2.43
111 112 2.028385 GTCCTCTCGGGAGCTTAAAACA 60.028 50.000 6.84 0.00 46.10 2.83
112 113 2.233922 TCCTCTCGGGAGCTTAAAACAG 59.766 50.000 6.84 0.00 39.58 3.16
113 114 2.233922 CCTCTCGGGAGCTTAAAACAGA 59.766 50.000 6.84 0.00 38.21 3.41
114 115 3.306780 CCTCTCGGGAGCTTAAAACAGAA 60.307 47.826 6.84 0.00 38.21 3.02
115 116 3.660865 TCTCGGGAGCTTAAAACAGAAC 58.339 45.455 0.00 0.00 0.00 3.01
116 117 3.070446 TCTCGGGAGCTTAAAACAGAACA 59.930 43.478 0.00 0.00 0.00 3.18
117 118 4.003648 CTCGGGAGCTTAAAACAGAACAT 58.996 43.478 0.00 0.00 0.00 2.71
118 119 5.046878 TCTCGGGAGCTTAAAACAGAACATA 60.047 40.000 0.00 0.00 0.00 2.29
119 120 5.175859 TCGGGAGCTTAAAACAGAACATAG 58.824 41.667 0.00 0.00 0.00 2.23
120 121 5.046878 TCGGGAGCTTAAAACAGAACATAGA 60.047 40.000 0.00 0.00 0.00 1.98
121 122 5.642063 CGGGAGCTTAAAACAGAACATAGAA 59.358 40.000 0.00 0.00 0.00 2.10
122 123 6.316390 CGGGAGCTTAAAACAGAACATAGAAT 59.684 38.462 0.00 0.00 0.00 2.40
123 124 7.494625 CGGGAGCTTAAAACAGAACATAGAATA 59.505 37.037 0.00 0.00 0.00 1.75
124 125 9.174166 GGGAGCTTAAAACAGAACATAGAATAA 57.826 33.333 0.00 0.00 0.00 1.40
131 132 8.934023 AAAACAGAACATAGAATAAACTGGGA 57.066 30.769 0.00 0.00 0.00 4.37
132 133 9.533831 AAAACAGAACATAGAATAAACTGGGAT 57.466 29.630 0.00 0.00 0.00 3.85
133 134 8.738645 AACAGAACATAGAATAAACTGGGATC 57.261 34.615 0.00 0.00 0.00 3.36
134 135 6.986817 ACAGAACATAGAATAAACTGGGATCG 59.013 38.462 0.00 0.00 0.00 3.69
135 136 5.992217 AGAACATAGAATAAACTGGGATCGC 59.008 40.000 2.14 2.14 0.00 4.58
136 137 4.642429 ACATAGAATAAACTGGGATCGCC 58.358 43.478 7.38 0.12 0.00 5.54
137 138 4.348168 ACATAGAATAAACTGGGATCGCCT 59.652 41.667 7.38 0.00 0.00 5.52
138 139 3.199880 AGAATAAACTGGGATCGCCTG 57.800 47.619 7.38 6.46 0.00 4.85
139 140 2.505819 AGAATAAACTGGGATCGCCTGT 59.494 45.455 7.38 7.07 0.00 4.00
140 141 2.332063 ATAAACTGGGATCGCCTGTG 57.668 50.000 7.38 0.00 0.00 3.66
141 142 0.392461 TAAACTGGGATCGCCTGTGC 60.392 55.000 7.38 0.00 0.00 4.57
142 143 2.129555 AAACTGGGATCGCCTGTGCT 62.130 55.000 7.38 0.00 34.43 4.40
143 144 1.264749 AACTGGGATCGCCTGTGCTA 61.265 55.000 7.38 0.00 34.43 3.49
144 145 1.227380 CTGGGATCGCCTGTGCTAC 60.227 63.158 7.38 0.00 34.43 3.58
145 146 1.960040 CTGGGATCGCCTGTGCTACA 61.960 60.000 7.38 0.00 34.43 2.74
146 147 1.227380 GGGATCGCCTGTGCTACAG 60.227 63.158 0.00 8.73 45.53 2.74
163 164 9.836864 TGTGCTACAGATTTTATCAATACATCT 57.163 29.630 0.00 0.00 0.00 2.90
173 174 8.671384 TTTTATCAATACATCTTTACCTCCGG 57.329 34.615 0.00 0.00 0.00 5.14
174 175 4.067972 TCAATACATCTTTACCTCCGGC 57.932 45.455 0.00 0.00 0.00 6.13
175 176 3.139077 CAATACATCTTTACCTCCGGCC 58.861 50.000 0.00 0.00 0.00 6.13
176 177 0.748450 TACATCTTTACCTCCGGCCG 59.252 55.000 21.04 21.04 0.00 6.13
177 178 0.974010 ACATCTTTACCTCCGGCCGA 60.974 55.000 30.73 12.25 0.00 5.54
178 179 0.393077 CATCTTTACCTCCGGCCGAT 59.607 55.000 30.73 11.75 0.00 4.18
179 180 1.616865 CATCTTTACCTCCGGCCGATA 59.383 52.381 30.73 13.89 0.00 2.92
180 181 1.779221 TCTTTACCTCCGGCCGATAA 58.221 50.000 30.73 16.21 0.00 1.75
181 182 2.109774 TCTTTACCTCCGGCCGATAAA 58.890 47.619 30.73 21.84 0.00 1.40
182 183 2.159057 TCTTTACCTCCGGCCGATAAAC 60.159 50.000 30.73 0.00 0.00 2.01
183 184 1.193323 TTACCTCCGGCCGATAAACA 58.807 50.000 30.73 2.82 0.00 2.83
184 185 1.416243 TACCTCCGGCCGATAAACAT 58.584 50.000 30.73 7.59 0.00 2.71
185 186 0.544697 ACCTCCGGCCGATAAACATT 59.455 50.000 30.73 0.00 0.00 2.71
186 187 1.064979 ACCTCCGGCCGATAAACATTT 60.065 47.619 30.73 0.00 0.00 2.32
187 188 2.171027 ACCTCCGGCCGATAAACATTTA 59.829 45.455 30.73 0.00 0.00 1.40
188 189 2.546789 CCTCCGGCCGATAAACATTTAC 59.453 50.000 30.73 0.00 0.00 2.01
189 190 3.463944 CTCCGGCCGATAAACATTTACT 58.536 45.455 30.73 0.00 0.00 2.24
190 191 3.460103 TCCGGCCGATAAACATTTACTC 58.540 45.455 30.73 0.00 0.00 2.59
191 192 3.118702 TCCGGCCGATAAACATTTACTCA 60.119 43.478 30.73 0.00 0.00 3.41
192 193 3.813166 CCGGCCGATAAACATTTACTCAT 59.187 43.478 30.73 0.00 0.00 2.90
193 194 4.084013 CCGGCCGATAAACATTTACTCATC 60.084 45.833 30.73 0.00 0.00 2.92
194 195 4.084013 CGGCCGATAAACATTTACTCATCC 60.084 45.833 24.07 0.00 0.00 3.51
195 196 4.819630 GGCCGATAAACATTTACTCATCCA 59.180 41.667 0.00 0.00 0.00 3.41
196 197 5.473504 GGCCGATAAACATTTACTCATCCAT 59.526 40.000 0.00 0.00 0.00 3.41
197 198 6.348540 GGCCGATAAACATTTACTCATCCATC 60.349 42.308 0.00 0.00 0.00 3.51
198 199 6.348540 GCCGATAAACATTTACTCATCCATCC 60.349 42.308 0.00 0.00 0.00 3.51
199 200 6.936900 CCGATAAACATTTACTCATCCATCCT 59.063 38.462 0.00 0.00 0.00 3.24
200 201 7.445402 CCGATAAACATTTACTCATCCATCCTT 59.555 37.037 0.00 0.00 0.00 3.36
201 202 8.840321 CGATAAACATTTACTCATCCATCCTTT 58.160 33.333 0.00 0.00 0.00 3.11
206 207 9.927081 AACATTTACTCATCCATCCTTTTATCT 57.073 29.630 0.00 0.00 0.00 1.98
207 208 9.927081 ACATTTACTCATCCATCCTTTTATCTT 57.073 29.630 0.00 0.00 0.00 2.40
209 210 9.927081 ATTTACTCATCCATCCTTTTATCTTGT 57.073 29.630 0.00 0.00 0.00 3.16
210 211 8.964476 TTACTCATCCATCCTTTTATCTTGTC 57.036 34.615 0.00 0.00 0.00 3.18
211 212 6.360618 ACTCATCCATCCTTTTATCTTGTCC 58.639 40.000 0.00 0.00 0.00 4.02
212 213 6.159398 ACTCATCCATCCTTTTATCTTGTCCT 59.841 38.462 0.00 0.00 0.00 3.85
213 214 7.348274 ACTCATCCATCCTTTTATCTTGTCCTA 59.652 37.037 0.00 0.00 0.00 2.94
214 215 7.739825 TCATCCATCCTTTTATCTTGTCCTAG 58.260 38.462 0.00 0.00 0.00 3.02
215 216 7.568738 TCATCCATCCTTTTATCTTGTCCTAGA 59.431 37.037 0.00 0.00 0.00 2.43
216 217 7.125792 TCCATCCTTTTATCTTGTCCTAGAC 57.874 40.000 0.00 0.00 0.00 2.59
217 218 6.903534 TCCATCCTTTTATCTTGTCCTAGACT 59.096 38.462 0.00 0.00 33.15 3.24
218 219 7.070074 TCCATCCTTTTATCTTGTCCTAGACTC 59.930 40.741 0.00 0.00 33.15 3.36
219 220 6.452494 TCCTTTTATCTTGTCCTAGACTCG 57.548 41.667 0.00 0.00 33.15 4.18
220 221 6.185511 TCCTTTTATCTTGTCCTAGACTCGA 58.814 40.000 0.00 0.00 33.15 4.04
221 222 6.834451 TCCTTTTATCTTGTCCTAGACTCGAT 59.166 38.462 0.00 1.51 33.15 3.59
222 223 6.920758 CCTTTTATCTTGTCCTAGACTCGATG 59.079 42.308 0.00 0.00 33.15 3.84
223 224 6.392625 TTTATCTTGTCCTAGACTCGATGG 57.607 41.667 0.00 0.00 33.15 3.51
224 225 3.367646 TCTTGTCCTAGACTCGATGGT 57.632 47.619 0.00 0.00 33.15 3.55
225 226 3.698289 TCTTGTCCTAGACTCGATGGTT 58.302 45.455 0.00 0.00 33.15 3.67
226 227 3.444034 TCTTGTCCTAGACTCGATGGTTG 59.556 47.826 0.00 0.00 33.15 3.77
227 228 3.081710 TGTCCTAGACTCGATGGTTGA 57.918 47.619 0.00 0.00 33.15 3.18
228 229 3.017442 TGTCCTAGACTCGATGGTTGAG 58.983 50.000 0.00 0.00 39.40 3.02
229 230 3.280295 GTCCTAGACTCGATGGTTGAGA 58.720 50.000 1.34 0.00 36.93 3.27
230 231 3.886505 GTCCTAGACTCGATGGTTGAGAT 59.113 47.826 1.34 0.00 36.93 2.75
231 232 5.064558 GTCCTAGACTCGATGGTTGAGATA 58.935 45.833 1.34 0.00 36.93 1.98
232 233 5.049267 GTCCTAGACTCGATGGTTGAGATAC 60.049 48.000 1.34 0.00 36.93 2.24
233 234 5.067273 CCTAGACTCGATGGTTGAGATACT 58.933 45.833 1.34 1.57 36.93 2.12
234 235 5.533154 CCTAGACTCGATGGTTGAGATACTT 59.467 44.000 1.34 0.00 36.93 2.24
235 236 5.255710 AGACTCGATGGTTGAGATACTTG 57.744 43.478 1.34 0.00 36.93 3.16
236 237 4.950475 AGACTCGATGGTTGAGATACTTGA 59.050 41.667 1.34 0.00 36.93 3.02
237 238 5.419155 AGACTCGATGGTTGAGATACTTGAA 59.581 40.000 1.34 0.00 36.93 2.69
238 239 6.097554 AGACTCGATGGTTGAGATACTTGAAT 59.902 38.462 1.34 0.00 36.93 2.57
239 240 6.045318 ACTCGATGGTTGAGATACTTGAATG 58.955 40.000 1.34 0.00 36.93 2.67
240 241 5.977635 TCGATGGTTGAGATACTTGAATGT 58.022 37.500 0.00 0.00 0.00 2.71
241 242 5.812127 TCGATGGTTGAGATACTTGAATGTG 59.188 40.000 0.00 0.00 0.00 3.21
242 243 5.503031 CGATGGTTGAGATACTTGAATGTGC 60.503 44.000 0.00 0.00 0.00 4.57
243 244 4.910195 TGGTTGAGATACTTGAATGTGCT 58.090 39.130 0.00 0.00 0.00 4.40
244 245 4.937620 TGGTTGAGATACTTGAATGTGCTC 59.062 41.667 0.00 0.00 0.00 4.26
245 246 4.937620 GGTTGAGATACTTGAATGTGCTCA 59.062 41.667 0.00 0.00 33.85 4.26
246 247 5.587844 GGTTGAGATACTTGAATGTGCTCAT 59.412 40.000 0.00 0.00 34.85 2.90
247 248 6.094603 GGTTGAGATACTTGAATGTGCTCATT 59.905 38.462 13.57 13.57 45.57 2.57
248 249 7.362401 GGTTGAGATACTTGAATGTGCTCATTT 60.362 37.037 14.73 2.54 43.33 2.32
249 250 7.692460 TGAGATACTTGAATGTGCTCATTTT 57.308 32.000 14.73 3.94 43.33 1.82
250 251 8.114331 TGAGATACTTGAATGTGCTCATTTTT 57.886 30.769 14.73 3.64 43.33 1.94
251 252 8.024865 TGAGATACTTGAATGTGCTCATTTTTG 58.975 33.333 14.73 10.10 43.33 2.44
252 253 8.114331 AGATACTTGAATGTGCTCATTTTTGA 57.886 30.769 14.73 1.98 43.33 2.69
253 254 8.242053 AGATACTTGAATGTGCTCATTTTTGAG 58.758 33.333 14.73 12.00 43.33 3.02
254 255 6.152932 ACTTGAATGTGCTCATTTTTGAGT 57.847 33.333 14.73 12.51 43.33 3.41
255 256 5.981315 ACTTGAATGTGCTCATTTTTGAGTG 59.019 36.000 14.73 5.22 43.33 3.51
256 257 5.771153 TGAATGTGCTCATTTTTGAGTGA 57.229 34.783 14.73 0.00 43.33 3.41
257 258 5.522456 TGAATGTGCTCATTTTTGAGTGAC 58.478 37.500 14.73 0.74 43.33 3.67
258 259 3.988379 TGTGCTCATTTTTGAGTGACC 57.012 42.857 5.02 0.00 38.16 4.02
259 260 2.622942 TGTGCTCATTTTTGAGTGACCC 59.377 45.455 5.02 0.00 38.16 4.46
260 261 2.622942 GTGCTCATTTTTGAGTGACCCA 59.377 45.455 5.02 0.00 38.16 4.51
261 262 2.622942 TGCTCATTTTTGAGTGACCCAC 59.377 45.455 5.02 0.00 38.16 4.61
262 263 2.350772 GCTCATTTTTGAGTGACCCACG 60.351 50.000 5.02 0.00 39.64 4.94
263 264 2.878406 CTCATTTTTGAGTGACCCACGT 59.122 45.455 0.00 0.00 39.64 4.49
264 265 2.875933 TCATTTTTGAGTGACCCACGTC 59.124 45.455 0.00 0.00 39.64 4.34
265 266 2.404923 TTTTTGAGTGACCCACGTCA 57.595 45.000 0.00 0.00 46.91 4.35
271 272 3.373226 TGACCCACGTCAGTAGGC 58.627 61.111 0.00 0.00 44.20 3.93
272 273 1.532078 TGACCCACGTCAGTAGGCA 60.532 57.895 0.00 0.00 44.20 4.75
273 274 0.902984 TGACCCACGTCAGTAGGCAT 60.903 55.000 0.00 0.00 44.20 4.40
274 275 0.249398 GACCCACGTCAGTAGGCATT 59.751 55.000 0.00 0.00 38.99 3.56
275 276 0.690762 ACCCACGTCAGTAGGCATTT 59.309 50.000 0.00 0.00 32.03 2.32
276 277 1.338769 ACCCACGTCAGTAGGCATTTC 60.339 52.381 0.00 0.00 32.03 2.17
277 278 1.066143 CCCACGTCAGTAGGCATTTCT 60.066 52.381 0.00 0.00 0.00 2.52
278 279 2.167693 CCCACGTCAGTAGGCATTTCTA 59.832 50.000 0.00 0.00 0.00 2.10
279 280 3.448686 CCACGTCAGTAGGCATTTCTAG 58.551 50.000 0.00 0.00 0.00 2.43
280 281 3.448686 CACGTCAGTAGGCATTTCTAGG 58.551 50.000 0.00 0.00 0.00 3.02
281 282 3.097614 ACGTCAGTAGGCATTTCTAGGT 58.902 45.455 0.00 0.00 0.00 3.08
282 283 4.097437 CACGTCAGTAGGCATTTCTAGGTA 59.903 45.833 0.00 0.00 0.00 3.08
283 284 4.894114 ACGTCAGTAGGCATTTCTAGGTAT 59.106 41.667 0.00 0.00 0.00 2.73
284 285 5.009811 ACGTCAGTAGGCATTTCTAGGTATC 59.990 44.000 0.00 0.00 0.00 2.24
285 286 5.241949 CGTCAGTAGGCATTTCTAGGTATCT 59.758 44.000 0.00 0.00 0.00 1.98
286 287 6.451393 GTCAGTAGGCATTTCTAGGTATCTG 58.549 44.000 0.00 0.00 0.00 2.90
287 288 6.041069 GTCAGTAGGCATTTCTAGGTATCTGT 59.959 42.308 0.00 0.00 0.00 3.41
288 289 6.265649 TCAGTAGGCATTTCTAGGTATCTGTC 59.734 42.308 0.00 0.00 0.00 3.51
289 290 6.040955 CAGTAGGCATTTCTAGGTATCTGTCA 59.959 42.308 0.00 0.00 0.00 3.58
290 291 5.283457 AGGCATTTCTAGGTATCTGTCAC 57.717 43.478 0.00 0.00 0.00 3.67
291 292 4.965532 AGGCATTTCTAGGTATCTGTCACT 59.034 41.667 0.00 0.00 0.00 3.41
292 293 5.426833 AGGCATTTCTAGGTATCTGTCACTT 59.573 40.000 0.00 0.00 0.00 3.16
293 294 6.611642 AGGCATTTCTAGGTATCTGTCACTTA 59.388 38.462 0.00 0.00 0.00 2.24
294 295 7.125811 AGGCATTTCTAGGTATCTGTCACTTAA 59.874 37.037 0.00 0.00 0.00 1.85
295 296 7.769044 GGCATTTCTAGGTATCTGTCACTTAAA 59.231 37.037 0.00 0.00 0.00 1.52
296 297 8.821894 GCATTTCTAGGTATCTGTCACTTAAAG 58.178 37.037 0.00 0.00 0.00 1.85
301 302 9.475620 TCTAGGTATCTGTCACTTAAAGATTCA 57.524 33.333 0.00 0.00 32.92 2.57
308 309 9.829507 ATCTGTCACTTAAAGATTCATTAGGAG 57.170 33.333 0.00 0.00 0.00 3.69
309 310 7.766278 TCTGTCACTTAAAGATTCATTAGGAGC 59.234 37.037 0.00 0.00 0.00 4.70
310 311 7.394016 TGTCACTTAAAGATTCATTAGGAGCA 58.606 34.615 0.00 0.00 0.00 4.26
311 312 8.049117 TGTCACTTAAAGATTCATTAGGAGCAT 58.951 33.333 0.00 0.00 0.00 3.79
312 313 8.341173 GTCACTTAAAGATTCATTAGGAGCATG 58.659 37.037 0.00 0.00 0.00 4.06
313 314 7.012704 TCACTTAAAGATTCATTAGGAGCATGC 59.987 37.037 10.51 10.51 0.00 4.06
314 315 6.830324 ACTTAAAGATTCATTAGGAGCATGCA 59.170 34.615 21.98 0.00 0.00 3.96
315 316 7.340232 ACTTAAAGATTCATTAGGAGCATGCAA 59.660 33.333 21.98 5.44 0.00 4.08
316 317 6.534475 AAAGATTCATTAGGAGCATGCAAA 57.466 33.333 21.98 8.79 0.00 3.68
317 318 5.511234 AGATTCATTAGGAGCATGCAAAC 57.489 39.130 21.98 9.36 0.00 2.93
318 319 4.951715 AGATTCATTAGGAGCATGCAAACA 59.048 37.500 21.98 0.00 0.00 2.83
319 320 4.707030 TTCATTAGGAGCATGCAAACAG 57.293 40.909 21.98 3.38 0.00 3.16
320 321 2.424601 TCATTAGGAGCATGCAAACAGC 59.575 45.455 21.98 1.38 45.96 4.40
321 322 1.176527 TTAGGAGCATGCAAACAGCC 58.823 50.000 21.98 10.65 44.83 4.85
322 323 0.680921 TAGGAGCATGCAAACAGCCC 60.681 55.000 21.98 8.66 44.83 5.19
323 324 1.980772 GGAGCATGCAAACAGCCCT 60.981 57.895 21.98 0.00 44.83 5.19
324 325 1.538687 GGAGCATGCAAACAGCCCTT 61.539 55.000 21.98 0.00 44.83 3.95
325 326 1.176527 GAGCATGCAAACAGCCCTTA 58.823 50.000 21.98 0.00 44.83 2.69
326 327 1.545582 GAGCATGCAAACAGCCCTTAA 59.454 47.619 21.98 0.00 44.83 1.85
327 328 1.273327 AGCATGCAAACAGCCCTTAAC 59.727 47.619 21.98 0.00 44.83 2.01
328 329 1.273327 GCATGCAAACAGCCCTTAACT 59.727 47.619 14.21 0.00 44.83 2.24
329 330 2.927871 GCATGCAAACAGCCCTTAACTG 60.928 50.000 14.21 0.00 44.83 3.16
330 331 0.673437 TGCAAACAGCCCTTAACTGC 59.327 50.000 0.00 0.00 44.83 4.40
331 332 0.673437 GCAAACAGCCCTTAACTGCA 59.327 50.000 0.00 0.00 38.79 4.41
332 333 1.273327 GCAAACAGCCCTTAACTGCAT 59.727 47.619 0.00 0.00 38.79 3.96
333 334 2.672195 GCAAACAGCCCTTAACTGCATC 60.672 50.000 0.00 0.00 38.79 3.91
334 335 1.839424 AACAGCCCTTAACTGCATCC 58.161 50.000 0.00 0.00 38.79 3.51
335 336 0.034089 ACAGCCCTTAACTGCATCCC 60.034 55.000 0.00 0.00 38.79 3.85
336 337 0.257039 CAGCCCTTAACTGCATCCCT 59.743 55.000 0.00 0.00 0.00 4.20
337 338 0.257039 AGCCCTTAACTGCATCCCTG 59.743 55.000 0.00 0.00 0.00 4.45
338 339 0.255890 GCCCTTAACTGCATCCCTGA 59.744 55.000 0.00 0.00 0.00 3.86
339 340 2.019156 GCCCTTAACTGCATCCCTGAC 61.019 57.143 0.00 0.00 0.00 3.51
340 341 1.561542 CCCTTAACTGCATCCCTGACT 59.438 52.381 0.00 0.00 0.00 3.41
341 342 2.771943 CCCTTAACTGCATCCCTGACTA 59.228 50.000 0.00 0.00 0.00 2.59
342 343 3.432326 CCCTTAACTGCATCCCTGACTAC 60.432 52.174 0.00 0.00 0.00 2.73
343 344 3.452627 CCTTAACTGCATCCCTGACTACT 59.547 47.826 0.00 0.00 0.00 2.57
344 345 4.437239 CTTAACTGCATCCCTGACTACTG 58.563 47.826 0.00 0.00 0.00 2.74
345 346 1.944177 ACTGCATCCCTGACTACTGT 58.056 50.000 0.00 0.00 0.00 3.55
346 347 1.552337 ACTGCATCCCTGACTACTGTG 59.448 52.381 0.00 0.00 0.00 3.66
347 348 0.904649 TGCATCCCTGACTACTGTGG 59.095 55.000 0.00 0.00 0.00 4.17
348 349 0.179000 GCATCCCTGACTACTGTGGG 59.821 60.000 0.00 0.00 40.95 4.61
349 350 0.179000 CATCCCTGACTACTGTGGGC 59.821 60.000 0.00 0.00 39.49 5.36
350 351 0.252696 ATCCCTGACTACTGTGGGCA 60.253 55.000 0.00 0.00 39.49 5.36
351 352 1.192146 TCCCTGACTACTGTGGGCAC 61.192 60.000 0.00 0.00 39.49 5.01
391 392 3.922171 AGAAGATTTGTCCCTGGCTAG 57.078 47.619 0.00 0.00 0.00 3.42
413 414 3.120060 GGAGTGATAAACAACAGCAGCTG 60.120 47.826 21.54 21.54 37.52 4.24
459 463 0.401250 AACCCACCAAGGCCCAAAAT 60.401 50.000 0.00 0.00 35.39 1.82
795 4471 4.387343 AGGAACGCCGGGTAGGGA 62.387 66.667 2.18 0.00 41.48 4.20
796 4472 3.159347 GGAACGCCGGGTAGGGAT 61.159 66.667 2.18 0.00 41.48 3.85
807 4483 2.519541 TAGGGATCGCTGCTCGCT 60.520 61.111 21.72 12.02 39.09 4.93
808 4484 2.556459 TAGGGATCGCTGCTCGCTC 61.556 63.158 21.72 0.00 37.18 5.03
870 4552 8.575454 GCAGTGTATTTTTGTTATCGATTTGTC 58.425 33.333 1.71 0.00 0.00 3.18
896 4578 6.842163 AGTTAAGTTGATGGATTTTGCTACG 58.158 36.000 0.00 0.00 0.00 3.51
904 4586 4.695217 TGGATTTTGCTACGAATTCACC 57.305 40.909 6.22 0.00 0.00 4.02
906 4588 3.486875 GGATTTTGCTACGAATTCACCCG 60.487 47.826 6.22 0.00 0.00 5.28
914 4596 4.689345 GCTACGAATTCACCCGCTATTATT 59.311 41.667 6.22 0.00 0.00 1.40
915 4597 5.178809 GCTACGAATTCACCCGCTATTATTT 59.821 40.000 6.22 0.00 0.00 1.40
916 4598 5.668558 ACGAATTCACCCGCTATTATTTC 57.331 39.130 6.22 0.00 0.00 2.17
918 4600 6.518493 ACGAATTCACCCGCTATTATTTCTA 58.482 36.000 6.22 0.00 0.00 2.10
919 4601 6.645415 ACGAATTCACCCGCTATTATTTCTAG 59.355 38.462 6.22 0.00 0.00 2.43
920 4602 6.645415 CGAATTCACCCGCTATTATTTCTAGT 59.355 38.462 6.22 0.00 0.00 2.57
921 4603 7.811236 CGAATTCACCCGCTATTATTTCTAGTA 59.189 37.037 6.22 0.00 0.00 1.82
922 4604 9.654663 GAATTCACCCGCTATTATTTCTAGTAT 57.345 33.333 0.00 0.00 0.00 2.12
925 4607 8.827177 TCACCCGCTATTATTTCTAGTATTTG 57.173 34.615 0.00 0.00 0.00 2.32
926 4608 8.426489 TCACCCGCTATTATTTCTAGTATTTGT 58.574 33.333 0.00 0.00 0.00 2.83
927 4609 8.709646 CACCCGCTATTATTTCTAGTATTTGTC 58.290 37.037 0.00 0.00 0.00 3.18
928 4610 8.426489 ACCCGCTATTATTTCTAGTATTTGTCA 58.574 33.333 0.00 0.00 0.00 3.58
929 4611 9.436957 CCCGCTATTATTTCTAGTATTTGTCAT 57.563 33.333 0.00 0.00 0.00 3.06
971 4653 5.412594 TGTTGGATAGTTGAGCATTGAGTTC 59.587 40.000 0.00 0.00 0.00 3.01
1016 4729 3.264897 CATGGCAGCTACGCGTCC 61.265 66.667 18.63 11.65 0.00 4.79
1108 4830 1.005037 CGCCTGGTCTACAAGCACA 60.005 57.895 0.00 0.00 36.28 4.57
1166 4888 4.463070 CTCCTCAAGGTACTCCTACTACC 58.537 52.174 0.00 0.00 44.35 3.18
1260 5003 4.189188 CGTAGGTGCGGAGGGACG 62.189 72.222 0.00 0.00 34.95 4.79
1261 5004 2.753043 GTAGGTGCGGAGGGACGA 60.753 66.667 0.00 0.00 34.95 4.20
1300 5043 3.741249 CCAATCTCATGGAGGTCATCAG 58.259 50.000 0.00 0.00 43.54 2.90
1334 5077 1.067142 GTCATCACCTGTCGTAAGCCA 60.067 52.381 0.00 0.00 37.18 4.75
1529 7477 5.873179 TTCTTCGCAGTTCGGATTATTTT 57.127 34.783 0.00 0.00 39.05 1.82
1643 7595 0.681175 GAAGCCTGGTGCAAACCATT 59.319 50.000 0.00 0.00 44.83 3.16
1706 7658 1.400494 AGGTGCGTTTTGTTGTCTGTC 59.600 47.619 0.00 0.00 0.00 3.51
1747 7699 5.458891 GCAAAATATCCTATTGCAGCTGAG 58.541 41.667 20.43 5.42 46.57 3.35
1780 7732 4.695396 TGATGGAACCATAAATGCAATGC 58.305 39.130 6.31 0.00 36.70 3.56
2120 8102 5.063564 GGAGATAGCTAACTTGGTTTGAACG 59.936 44.000 4.86 0.00 0.00 3.95
2146 8128 4.916983 TGCTTTCTGTATTTTGTGCAGT 57.083 36.364 0.00 0.00 40.91 4.40
2286 8345 9.575783 TCATTTTACTCTTTGTGTACCAAAAAC 57.424 29.630 9.73 0.00 42.31 2.43
2348 8408 7.499200 TGCTACCTACCAAAGTTCCTTAATA 57.501 36.000 0.00 0.00 0.00 0.98
2359 8419 8.827677 CCAAAGTTCCTTAATACATACTACAGC 58.172 37.037 0.00 0.00 0.00 4.40
2446 8506 0.896019 CACGAGTGAGGGTCCTGACT 60.896 60.000 8.83 8.83 42.91 3.41
2473 8533 2.761208 GGTGAGCCACATAGTCTACAGT 59.239 50.000 7.49 0.00 35.86 3.55
2500 8560 7.368480 TGGCTATGAATGATTGTATCGATTG 57.632 36.000 1.71 0.00 0.00 2.67
2642 8762 5.185454 TCTTCTTTGTCTCTTTGTGCAGAA 58.815 37.500 0.00 0.00 0.00 3.02
2653 8773 6.697019 TCTCTTTGTGCAGAAATTTTGCTTAC 59.303 34.615 9.73 13.41 42.02 2.34
2654 8774 6.336566 TCTTTGTGCAGAAATTTTGCTTACA 58.663 32.000 9.73 15.02 42.02 2.41
2744 8884 6.407202 ACTGATCTTACGGATAAAAAGCAGT 58.593 36.000 0.00 0.00 32.24 4.40
2763 8903 6.344500 AGCAGTCTGTTAAGATCAGTATTGG 58.656 40.000 0.93 0.00 34.13 3.16
2775 8915 3.343617 TCAGTATTGGTAAAGTGCAGGC 58.656 45.455 0.00 0.00 0.00 4.85
2953 9097 2.171027 CAGAGAGTACTACCCCTCGAGT 59.829 54.545 12.31 0.00 32.88 4.18
2957 9101 3.521126 AGAGTACTACCCCTCGAGTAACA 59.479 47.826 12.31 0.00 32.88 2.41
2989 9133 6.022107 ACTATACTGGAGTGTGTATGGGTA 57.978 41.667 0.00 0.00 33.71 3.69
3045 9189 1.986882 AGCAGTCAGAAAACCCAAGG 58.013 50.000 0.00 0.00 0.00 3.61
3101 9245 3.421394 TCCAGTATGAGACCCTTGGAT 57.579 47.619 0.00 0.00 39.69 3.41
3558 12202 7.814107 ACTGTTGTTTAGCATGATATTTTGGTG 59.186 33.333 0.00 0.00 0.00 4.17
3717 12483 2.159310 GCATATTTTGGGTTGCGTGCTA 60.159 45.455 0.00 0.00 0.00 3.49
3848 12798 8.500773 GTTTATCGTGTCATACTTTGAAAAGGA 58.499 33.333 7.65 0.00 40.31 3.36
3909 12862 0.677731 TGGAAAGCCTTGATGGAGCG 60.678 55.000 0.00 0.00 38.35 5.03
4054 13031 2.032528 CTCTTCTTGGCACGCCCA 59.967 61.111 5.42 0.00 43.51 5.36
4221 13209 2.202987 CAGACCGCTGCAGATCCC 60.203 66.667 20.43 3.05 34.95 3.85
4243 13399 5.385617 CCGCTTTGTAACTCTGAAAGAATG 58.614 41.667 0.00 0.00 46.34 2.67
4306 13504 4.033587 GCATTCTTACCGCATCTCGTTTTA 59.966 41.667 0.00 0.00 36.19 1.52
4396 13876 1.069636 CAAGAAGCAAACGTCTCAGGC 60.070 52.381 0.00 0.00 33.10 4.85
4397 13877 0.946221 AGAAGCAAACGTCTCAGGCG 60.946 55.000 0.00 0.00 27.15 5.52
4398 13878 2.500183 GAAGCAAACGTCTCAGGCGC 62.500 60.000 0.00 0.00 0.00 6.53
4399 13879 2.996168 AAGCAAACGTCTCAGGCGCT 62.996 55.000 7.64 0.00 0.00 5.92
4400 13880 1.736645 GCAAACGTCTCAGGCGCTA 60.737 57.895 7.64 0.00 0.00 4.26
4525 14051 2.279741 TCAATCATGCTTACACGCCTC 58.720 47.619 0.00 0.00 0.00 4.70
4597 16952 0.929615 GCAACACCACAAACATGTGC 59.070 50.000 0.00 0.00 38.40 4.57
4638 16993 5.006165 CACTAATTGAGCTGAGAATCGAACC 59.994 44.000 0.00 0.00 38.61 3.62
4712 17402 7.234355 TCCTCTAAATCTTCTTGGAAGCTTTT 58.766 34.615 0.00 11.23 0.00 2.27
4820 17557 4.228097 CAATGCCGAGCGCCTTCG 62.228 66.667 11.71 11.71 40.18 3.79
4891 17628 2.177594 CTTGCTGACGGGCCTTCTCT 62.178 60.000 11.67 0.00 0.00 3.10
4918 17655 0.602060 GGGACGTCTCCTTCTTTCGT 59.398 55.000 16.46 0.00 36.68 3.85
4938 17675 0.179163 CGCCTTTCCAAAATCTCGCC 60.179 55.000 0.00 0.00 0.00 5.54
5152 17925 2.282180 GGCAAAAGGGAGACGCCA 60.282 61.111 0.00 0.00 42.50 5.69
5202 18014 2.371259 GGTCTTGGGCCCTCTCTCC 61.371 68.421 25.70 14.95 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.696143 TTGGGTGTCTTGGGAGGTGA 60.696 55.000 0.00 0.00 0.00 4.02
1 2 0.250901 CTTGGGTGTCTTGGGAGGTG 60.251 60.000 0.00 0.00 0.00 4.00
2 3 2.069165 GCTTGGGTGTCTTGGGAGGT 62.069 60.000 0.00 0.00 0.00 3.85
3 4 1.303643 GCTTGGGTGTCTTGGGAGG 60.304 63.158 0.00 0.00 0.00 4.30
4 5 0.607489 CAGCTTGGGTGTCTTGGGAG 60.607 60.000 0.00 0.00 0.00 4.30
6 7 1.604593 CCAGCTTGGGTGTCTTGGG 60.605 63.158 0.00 0.00 32.67 4.12
7 8 0.468029 AACCAGCTTGGGTGTCTTGG 60.468 55.000 0.00 0.00 43.37 3.61
8 9 1.402787 AAACCAGCTTGGGTGTCTTG 58.597 50.000 0.00 0.00 35.52 3.02
9 10 2.031870 GAAAACCAGCTTGGGTGTCTT 58.968 47.619 0.00 0.00 35.52 3.01
10 11 1.215423 AGAAAACCAGCTTGGGTGTCT 59.785 47.619 7.02 7.02 46.92 3.41
11 12 1.692411 AGAAAACCAGCTTGGGTGTC 58.308 50.000 0.00 0.00 41.98 3.67
12 13 3.157087 CATAGAAAACCAGCTTGGGTGT 58.843 45.455 0.00 0.00 35.52 4.16
13 14 2.493278 CCATAGAAAACCAGCTTGGGTG 59.507 50.000 0.00 0.00 35.52 4.61
14 15 2.807676 CCATAGAAAACCAGCTTGGGT 58.192 47.619 7.06 0.00 40.89 4.51
15 16 1.478105 GCCATAGAAAACCAGCTTGGG 59.522 52.381 7.06 0.00 43.37 4.12
16 17 1.478105 GGCCATAGAAAACCAGCTTGG 59.522 52.381 0.00 1.16 45.02 3.61
17 18 1.478105 GGGCCATAGAAAACCAGCTTG 59.522 52.381 4.39 0.00 0.00 4.01
18 19 1.359130 AGGGCCATAGAAAACCAGCTT 59.641 47.619 6.18 0.00 0.00 3.74
19 20 1.002857 AGGGCCATAGAAAACCAGCT 58.997 50.000 6.18 0.00 0.00 4.24
20 21 1.106285 CAGGGCCATAGAAAACCAGC 58.894 55.000 6.18 0.00 0.00 4.85
21 22 1.106285 GCAGGGCCATAGAAAACCAG 58.894 55.000 6.18 0.00 0.00 4.00
22 23 0.704076 AGCAGGGCCATAGAAAACCA 59.296 50.000 6.18 0.00 0.00 3.67
23 24 1.478105 CAAGCAGGGCCATAGAAAACC 59.522 52.381 6.18 0.00 0.00 3.27
24 25 1.134995 GCAAGCAGGGCCATAGAAAAC 60.135 52.381 6.18 0.00 0.00 2.43
25 26 1.185315 GCAAGCAGGGCCATAGAAAA 58.815 50.000 6.18 0.00 0.00 2.29
26 27 0.039472 TGCAAGCAGGGCCATAGAAA 59.961 50.000 6.18 0.00 0.00 2.52
27 28 0.259647 ATGCAAGCAGGGCCATAGAA 59.740 50.000 6.18 0.00 0.00 2.10
28 29 0.179009 GATGCAAGCAGGGCCATAGA 60.179 55.000 6.18 0.00 0.00 1.98
29 30 1.177256 GGATGCAAGCAGGGCCATAG 61.177 60.000 6.18 0.00 0.00 2.23
30 31 1.152694 GGATGCAAGCAGGGCCATA 60.153 57.895 6.18 0.00 0.00 2.74
31 32 2.443390 GGATGCAAGCAGGGCCAT 60.443 61.111 6.18 0.00 0.00 4.40
32 33 4.764771 GGGATGCAAGCAGGGCCA 62.765 66.667 6.18 0.00 0.00 5.36
34 35 4.764771 TGGGGATGCAAGCAGGGC 62.765 66.667 0.00 0.00 0.00 5.19
35 36 1.925285 TAGTGGGGATGCAAGCAGGG 61.925 60.000 0.00 0.00 0.00 4.45
36 37 0.465097 CTAGTGGGGATGCAAGCAGG 60.465 60.000 0.00 0.00 0.00 4.85
37 38 0.543277 TCTAGTGGGGATGCAAGCAG 59.457 55.000 0.00 0.00 0.00 4.24
38 39 0.991146 TTCTAGTGGGGATGCAAGCA 59.009 50.000 0.00 0.00 0.00 3.91
39 40 2.355010 ATTCTAGTGGGGATGCAAGC 57.645 50.000 0.00 0.00 0.00 4.01
40 41 4.952335 AGAAAATTCTAGTGGGGATGCAAG 59.048 41.667 0.00 0.00 35.34 4.01
41 42 4.934356 AGAAAATTCTAGTGGGGATGCAA 58.066 39.130 0.00 0.00 35.34 4.08
42 43 4.591321 AGAAAATTCTAGTGGGGATGCA 57.409 40.909 0.00 0.00 35.34 3.96
43 44 6.772716 TCATAAGAAAATTCTAGTGGGGATGC 59.227 38.462 0.00 0.00 36.28 3.91
44 45 8.790718 CATCATAAGAAAATTCTAGTGGGGATG 58.209 37.037 0.00 0.00 36.28 3.51
45 46 7.946776 CCATCATAAGAAAATTCTAGTGGGGAT 59.053 37.037 0.00 0.00 36.28 3.85
46 47 7.128728 TCCATCATAAGAAAATTCTAGTGGGGA 59.871 37.037 0.00 6.90 36.28 4.81
47 48 7.290061 TCCATCATAAGAAAATTCTAGTGGGG 58.710 38.462 0.00 5.11 36.28 4.96
48 49 7.995488 ACTCCATCATAAGAAAATTCTAGTGGG 59.005 37.037 0.00 0.00 36.28 4.61
49 50 8.970859 ACTCCATCATAAGAAAATTCTAGTGG 57.029 34.615 0.00 2.08 36.28 4.00
61 62 9.904198 TGTAATCATTTGAACTCCATCATAAGA 57.096 29.630 0.00 0.00 0.00 2.10
65 66 9.857656 ACTATGTAATCATTTGAACTCCATCAT 57.142 29.630 0.00 0.00 35.70 2.45
66 67 9.330063 GACTATGTAATCATTTGAACTCCATCA 57.670 33.333 0.00 0.00 35.70 3.07
67 68 8.778358 GGACTATGTAATCATTTGAACTCCATC 58.222 37.037 0.00 0.00 35.70 3.51
68 69 8.497745 AGGACTATGTAATCATTTGAACTCCAT 58.502 33.333 0.00 0.00 35.70 3.41
69 70 7.861629 AGGACTATGTAATCATTTGAACTCCA 58.138 34.615 0.00 0.00 35.70 3.86
70 71 8.207545 AGAGGACTATGTAATCATTTGAACTCC 58.792 37.037 0.00 0.00 35.70 3.85
71 72 9.255304 GAGAGGACTATGTAATCATTTGAACTC 57.745 37.037 0.00 0.00 35.70 3.01
72 73 7.923344 CGAGAGGACTATGTAATCATTTGAACT 59.077 37.037 0.00 0.00 35.70 3.01
73 74 8.066668 CGAGAGGACTATGTAATCATTTGAAC 57.933 38.462 0.00 0.00 35.70 3.18
93 94 3.594603 TCTGTTTTAAGCTCCCGAGAG 57.405 47.619 0.00 0.00 43.57 3.20
94 95 3.070446 TGTTCTGTTTTAAGCTCCCGAGA 59.930 43.478 0.00 0.00 0.00 4.04
95 96 3.399330 TGTTCTGTTTTAAGCTCCCGAG 58.601 45.455 0.00 0.00 0.00 4.63
96 97 3.478857 TGTTCTGTTTTAAGCTCCCGA 57.521 42.857 0.00 0.00 0.00 5.14
97 98 5.175859 TCTATGTTCTGTTTTAAGCTCCCG 58.824 41.667 0.00 0.00 0.00 5.14
98 99 7.631717 ATTCTATGTTCTGTTTTAAGCTCCC 57.368 36.000 0.00 0.00 0.00 4.30
106 107 8.934023 TCCCAGTTTATTCTATGTTCTGTTTT 57.066 30.769 0.00 0.00 0.00 2.43
107 108 9.178758 GATCCCAGTTTATTCTATGTTCTGTTT 57.821 33.333 0.00 0.00 0.00 2.83
108 109 7.495934 CGATCCCAGTTTATTCTATGTTCTGTT 59.504 37.037 0.00 0.00 0.00 3.16
109 110 6.986817 CGATCCCAGTTTATTCTATGTTCTGT 59.013 38.462 0.00 0.00 0.00 3.41
110 111 6.073548 GCGATCCCAGTTTATTCTATGTTCTG 60.074 42.308 0.00 0.00 0.00 3.02
111 112 5.992217 GCGATCCCAGTTTATTCTATGTTCT 59.008 40.000 0.00 0.00 0.00 3.01
112 113 5.179555 GGCGATCCCAGTTTATTCTATGTTC 59.820 44.000 0.00 0.00 0.00 3.18
113 114 5.063880 GGCGATCCCAGTTTATTCTATGTT 58.936 41.667 0.00 0.00 0.00 2.71
114 115 4.348168 AGGCGATCCCAGTTTATTCTATGT 59.652 41.667 3.45 0.00 35.39 2.29
115 116 4.692625 CAGGCGATCCCAGTTTATTCTATG 59.307 45.833 3.45 0.00 35.39 2.23
116 117 4.348168 ACAGGCGATCCCAGTTTATTCTAT 59.652 41.667 3.45 0.00 35.39 1.98
117 118 3.709653 ACAGGCGATCCCAGTTTATTCTA 59.290 43.478 3.45 0.00 35.39 2.10
118 119 2.505819 ACAGGCGATCCCAGTTTATTCT 59.494 45.455 3.45 0.00 35.39 2.40
119 120 2.614057 CACAGGCGATCCCAGTTTATTC 59.386 50.000 3.45 0.00 29.66 1.75
120 121 2.643551 CACAGGCGATCCCAGTTTATT 58.356 47.619 3.45 0.00 29.66 1.40
121 122 1.747206 GCACAGGCGATCCCAGTTTAT 60.747 52.381 3.45 0.00 29.66 1.40
122 123 0.392461 GCACAGGCGATCCCAGTTTA 60.392 55.000 3.45 0.00 29.66 2.01
123 124 1.675641 GCACAGGCGATCCCAGTTT 60.676 57.895 3.45 0.00 29.66 2.66
124 125 2.045926 GCACAGGCGATCCCAGTT 60.046 61.111 3.45 0.00 29.66 3.16
128 129 1.676678 TCTGTAGCACAGGCGATCCC 61.677 60.000 13.87 0.00 45.94 3.85
129 130 0.390860 ATCTGTAGCACAGGCGATCC 59.609 55.000 13.87 0.00 45.94 3.36
130 131 2.231215 AATCTGTAGCACAGGCGATC 57.769 50.000 13.87 0.00 45.94 3.69
131 132 2.698855 AAATCTGTAGCACAGGCGAT 57.301 45.000 13.87 1.74 45.94 4.58
132 133 2.472695 AAAATCTGTAGCACAGGCGA 57.527 45.000 13.87 0.00 45.94 5.54
133 134 3.871006 TGATAAAATCTGTAGCACAGGCG 59.129 43.478 13.87 0.00 45.94 5.52
134 135 5.818136 TTGATAAAATCTGTAGCACAGGC 57.182 39.130 13.87 0.00 45.94 4.85
135 136 8.437360 TGTATTGATAAAATCTGTAGCACAGG 57.563 34.615 13.87 0.24 45.94 4.00
137 138 9.836864 AGATGTATTGATAAAATCTGTAGCACA 57.163 29.630 0.00 0.00 0.00 4.57
168 169 3.463944 AGTAAATGTTTATCGGCCGGAG 58.536 45.455 27.83 0.00 0.00 4.63
169 170 3.118702 TGAGTAAATGTTTATCGGCCGGA 60.119 43.478 27.83 12.89 0.00 5.14
170 171 3.199677 TGAGTAAATGTTTATCGGCCGG 58.800 45.455 27.83 6.80 0.00 6.13
171 172 4.084013 GGATGAGTAAATGTTTATCGGCCG 60.084 45.833 22.12 22.12 0.00 6.13
172 173 4.819630 TGGATGAGTAAATGTTTATCGGCC 59.180 41.667 0.00 0.00 0.00 6.13
173 174 6.348540 GGATGGATGAGTAAATGTTTATCGGC 60.349 42.308 0.00 0.00 0.00 5.54
174 175 6.936900 AGGATGGATGAGTAAATGTTTATCGG 59.063 38.462 0.00 0.00 0.00 4.18
175 176 7.969536 AGGATGGATGAGTAAATGTTTATCG 57.030 36.000 0.00 0.00 0.00 2.92
180 181 9.927081 AGATAAAAGGATGGATGAGTAAATGTT 57.073 29.630 0.00 0.00 0.00 2.71
181 182 9.927081 AAGATAAAAGGATGGATGAGTAAATGT 57.073 29.630 0.00 0.00 0.00 2.71
183 184 9.927081 ACAAGATAAAAGGATGGATGAGTAAAT 57.073 29.630 0.00 0.00 0.00 1.40
184 185 9.396022 GACAAGATAAAAGGATGGATGAGTAAA 57.604 33.333 0.00 0.00 0.00 2.01
185 186 7.993183 GGACAAGATAAAAGGATGGATGAGTAA 59.007 37.037 0.00 0.00 0.00 2.24
186 187 7.348274 AGGACAAGATAAAAGGATGGATGAGTA 59.652 37.037 0.00 0.00 0.00 2.59
187 188 6.159398 AGGACAAGATAAAAGGATGGATGAGT 59.841 38.462 0.00 0.00 0.00 3.41
188 189 6.599445 AGGACAAGATAAAAGGATGGATGAG 58.401 40.000 0.00 0.00 0.00 2.90
189 190 6.581388 AGGACAAGATAAAAGGATGGATGA 57.419 37.500 0.00 0.00 0.00 2.92
190 191 7.659390 GTCTAGGACAAGATAAAAGGATGGATG 59.341 40.741 0.00 0.00 32.09 3.51
191 192 7.570607 AGTCTAGGACAAGATAAAAGGATGGAT 59.429 37.037 0.52 0.00 34.60 3.41
192 193 6.903534 AGTCTAGGACAAGATAAAAGGATGGA 59.096 38.462 0.52 0.00 34.60 3.41
193 194 7.130681 AGTCTAGGACAAGATAAAAGGATGG 57.869 40.000 0.52 0.00 34.60 3.51
194 195 6.920758 CGAGTCTAGGACAAGATAAAAGGATG 59.079 42.308 0.52 0.00 34.60 3.51
195 196 6.834451 TCGAGTCTAGGACAAGATAAAAGGAT 59.166 38.462 0.52 0.00 34.60 3.24
196 197 6.185511 TCGAGTCTAGGACAAGATAAAAGGA 58.814 40.000 0.52 0.00 34.60 3.36
197 198 6.452494 TCGAGTCTAGGACAAGATAAAAGG 57.548 41.667 0.52 0.00 34.60 3.11
198 199 6.920758 CCATCGAGTCTAGGACAAGATAAAAG 59.079 42.308 0.00 0.00 34.60 2.27
199 200 6.380274 ACCATCGAGTCTAGGACAAGATAAAA 59.620 38.462 0.00 0.00 34.60 1.52
200 201 5.892119 ACCATCGAGTCTAGGACAAGATAAA 59.108 40.000 0.00 0.00 34.60 1.40
201 202 5.446860 ACCATCGAGTCTAGGACAAGATAA 58.553 41.667 0.00 0.00 34.60 1.75
202 203 5.050126 ACCATCGAGTCTAGGACAAGATA 57.950 43.478 0.00 0.00 34.60 1.98
203 204 3.904717 ACCATCGAGTCTAGGACAAGAT 58.095 45.455 0.00 2.23 34.60 2.40
204 205 3.367646 ACCATCGAGTCTAGGACAAGA 57.632 47.619 0.00 0.07 34.60 3.02
205 206 3.444034 TCAACCATCGAGTCTAGGACAAG 59.556 47.826 0.00 0.00 34.60 3.16
206 207 3.427573 TCAACCATCGAGTCTAGGACAA 58.572 45.455 0.00 0.00 34.60 3.18
207 208 3.017442 CTCAACCATCGAGTCTAGGACA 58.983 50.000 0.00 0.00 34.60 4.02
208 209 3.280295 TCTCAACCATCGAGTCTAGGAC 58.720 50.000 0.00 0.00 0.00 3.85
209 210 3.646736 TCTCAACCATCGAGTCTAGGA 57.353 47.619 0.00 0.00 0.00 2.94
210 211 5.067273 AGTATCTCAACCATCGAGTCTAGG 58.933 45.833 0.00 0.00 0.00 3.02
211 212 6.261158 TCAAGTATCTCAACCATCGAGTCTAG 59.739 42.308 0.00 0.00 0.00 2.43
212 213 6.120220 TCAAGTATCTCAACCATCGAGTCTA 58.880 40.000 0.00 0.00 0.00 2.59
213 214 4.950475 TCAAGTATCTCAACCATCGAGTCT 59.050 41.667 0.00 0.00 0.00 3.24
214 215 5.250235 TCAAGTATCTCAACCATCGAGTC 57.750 43.478 0.00 0.00 0.00 3.36
215 216 5.661056 TTCAAGTATCTCAACCATCGAGT 57.339 39.130 0.00 0.00 0.00 4.18
216 217 6.019237 CACATTCAAGTATCTCAACCATCGAG 60.019 42.308 0.00 0.00 0.00 4.04
217 218 5.812127 CACATTCAAGTATCTCAACCATCGA 59.188 40.000 0.00 0.00 0.00 3.59
218 219 5.503031 GCACATTCAAGTATCTCAACCATCG 60.503 44.000 0.00 0.00 0.00 3.84
219 220 5.587844 AGCACATTCAAGTATCTCAACCATC 59.412 40.000 0.00 0.00 0.00 3.51
220 221 5.503927 AGCACATTCAAGTATCTCAACCAT 58.496 37.500 0.00 0.00 0.00 3.55
221 222 4.910195 AGCACATTCAAGTATCTCAACCA 58.090 39.130 0.00 0.00 0.00 3.67
222 223 4.937620 TGAGCACATTCAAGTATCTCAACC 59.062 41.667 0.00 0.00 31.64 3.77
223 224 6.674694 ATGAGCACATTCAAGTATCTCAAC 57.325 37.500 0.00 0.00 35.44 3.18
224 225 7.692460 AAATGAGCACATTCAAGTATCTCAA 57.308 32.000 9.90 0.00 44.67 3.02
225 226 7.692460 AAAATGAGCACATTCAAGTATCTCA 57.308 32.000 9.90 0.00 44.67 3.27
226 227 8.239314 TCAAAAATGAGCACATTCAAGTATCTC 58.761 33.333 9.90 0.00 44.67 2.75
227 228 8.114331 TCAAAAATGAGCACATTCAAGTATCT 57.886 30.769 9.90 0.00 44.67 1.98
228 229 8.025445 ACTCAAAAATGAGCACATTCAAGTATC 58.975 33.333 9.90 0.00 44.67 2.24
229 230 7.811236 CACTCAAAAATGAGCACATTCAAGTAT 59.189 33.333 9.90 0.00 44.67 2.12
230 231 7.013178 TCACTCAAAAATGAGCACATTCAAGTA 59.987 33.333 9.90 0.00 44.67 2.24
231 232 5.981315 CACTCAAAAATGAGCACATTCAAGT 59.019 36.000 9.90 8.26 44.67 3.16
232 233 6.143438 GTCACTCAAAAATGAGCACATTCAAG 59.857 38.462 9.90 7.72 44.67 3.02
233 234 5.978919 GTCACTCAAAAATGAGCACATTCAA 59.021 36.000 9.90 0.00 44.67 2.69
234 235 5.507817 GGTCACTCAAAAATGAGCACATTCA 60.508 40.000 9.90 0.00 44.67 2.57
235 236 4.919754 GGTCACTCAAAAATGAGCACATTC 59.080 41.667 9.90 0.00 44.67 2.67
236 237 4.262164 GGGTCACTCAAAAATGAGCACATT 60.262 41.667 3.28 3.28 46.99 2.71
237 238 3.256631 GGGTCACTCAAAAATGAGCACAT 59.743 43.478 5.78 0.00 43.57 3.21
238 239 2.622942 GGGTCACTCAAAAATGAGCACA 59.377 45.455 5.78 0.00 43.57 4.57
239 240 2.622942 TGGGTCACTCAAAAATGAGCAC 59.377 45.455 5.78 3.46 43.57 4.40
240 241 2.622942 GTGGGTCACTCAAAAATGAGCA 59.377 45.455 5.78 0.00 43.57 4.26
241 242 2.350772 CGTGGGTCACTCAAAAATGAGC 60.351 50.000 5.78 0.00 41.56 4.26
242 243 2.878406 ACGTGGGTCACTCAAAAATGAG 59.122 45.455 4.36 4.36 41.45 2.90
243 244 2.875933 GACGTGGGTCACTCAAAAATGA 59.124 45.455 0.00 0.00 42.91 2.57
244 245 3.268013 GACGTGGGTCACTCAAAAATG 57.732 47.619 0.00 0.00 42.91 2.32
255 256 0.249398 AATGCCTACTGACGTGGGTC 59.751 55.000 0.00 0.00 43.23 4.46
256 257 0.690762 AAATGCCTACTGACGTGGGT 59.309 50.000 0.00 0.00 43.23 4.51
257 258 1.066143 AGAAATGCCTACTGACGTGGG 60.066 52.381 0.00 0.00 44.07 4.61
258 259 2.386661 AGAAATGCCTACTGACGTGG 57.613 50.000 0.00 0.00 0.00 4.94
259 260 3.119101 ACCTAGAAATGCCTACTGACGTG 60.119 47.826 0.00 0.00 0.00 4.49
260 261 3.097614 ACCTAGAAATGCCTACTGACGT 58.902 45.455 0.00 0.00 0.00 4.34
261 262 3.802948 ACCTAGAAATGCCTACTGACG 57.197 47.619 0.00 0.00 0.00 4.35
262 263 6.041069 ACAGATACCTAGAAATGCCTACTGAC 59.959 42.308 0.00 0.00 0.00 3.51
263 264 6.136857 ACAGATACCTAGAAATGCCTACTGA 58.863 40.000 0.00 0.00 0.00 3.41
264 265 6.040955 TGACAGATACCTAGAAATGCCTACTG 59.959 42.308 0.00 0.00 0.00 2.74
265 266 6.041069 GTGACAGATACCTAGAAATGCCTACT 59.959 42.308 0.00 0.00 0.00 2.57
266 267 6.041069 AGTGACAGATACCTAGAAATGCCTAC 59.959 42.308 0.00 0.00 0.00 3.18
267 268 6.136857 AGTGACAGATACCTAGAAATGCCTA 58.863 40.000 0.00 0.00 0.00 3.93
268 269 4.965532 AGTGACAGATACCTAGAAATGCCT 59.034 41.667 0.00 0.00 0.00 4.75
269 270 5.283457 AGTGACAGATACCTAGAAATGCC 57.717 43.478 0.00 0.00 0.00 4.40
270 271 8.718102 TTTAAGTGACAGATACCTAGAAATGC 57.282 34.615 0.00 0.00 0.00 3.56
275 276 9.475620 TGAATCTTTAAGTGACAGATACCTAGA 57.524 33.333 0.00 0.00 0.00 2.43
282 283 9.829507 CTCCTAATGAATCTTTAAGTGACAGAT 57.170 33.333 0.00 0.00 0.00 2.90
283 284 7.766278 GCTCCTAATGAATCTTTAAGTGACAGA 59.234 37.037 0.00 0.00 0.00 3.41
284 285 7.550551 TGCTCCTAATGAATCTTTAAGTGACAG 59.449 37.037 0.00 0.00 0.00 3.51
285 286 7.394016 TGCTCCTAATGAATCTTTAAGTGACA 58.606 34.615 0.00 0.00 0.00 3.58
286 287 7.849804 TGCTCCTAATGAATCTTTAAGTGAC 57.150 36.000 0.00 0.00 0.00 3.67
287 288 7.012704 GCATGCTCCTAATGAATCTTTAAGTGA 59.987 37.037 11.37 0.00 0.00 3.41
288 289 7.137426 GCATGCTCCTAATGAATCTTTAAGTG 58.863 38.462 11.37 0.00 0.00 3.16
289 290 6.830324 TGCATGCTCCTAATGAATCTTTAAGT 59.170 34.615 20.33 0.00 0.00 2.24
290 291 7.268199 TGCATGCTCCTAATGAATCTTTAAG 57.732 36.000 20.33 0.00 0.00 1.85
291 292 7.643569 TTGCATGCTCCTAATGAATCTTTAA 57.356 32.000 20.33 0.00 0.00 1.52
292 293 7.122501 TGTTTGCATGCTCCTAATGAATCTTTA 59.877 33.333 20.33 0.00 0.00 1.85
293 294 6.071221 TGTTTGCATGCTCCTAATGAATCTTT 60.071 34.615 20.33 0.00 0.00 2.52
294 295 5.419788 TGTTTGCATGCTCCTAATGAATCTT 59.580 36.000 20.33 0.00 0.00 2.40
295 296 4.951715 TGTTTGCATGCTCCTAATGAATCT 59.048 37.500 20.33 0.00 0.00 2.40
296 297 5.252969 TGTTTGCATGCTCCTAATGAATC 57.747 39.130 20.33 2.05 0.00 2.52
297 298 4.441079 GCTGTTTGCATGCTCCTAATGAAT 60.441 41.667 20.33 0.00 42.31 2.57
298 299 3.119388 GCTGTTTGCATGCTCCTAATGAA 60.119 43.478 20.33 0.00 42.31 2.57
299 300 2.424601 GCTGTTTGCATGCTCCTAATGA 59.575 45.455 20.33 0.00 42.31 2.57
300 301 2.480759 GGCTGTTTGCATGCTCCTAATG 60.481 50.000 20.33 4.46 45.15 1.90
301 302 1.753073 GGCTGTTTGCATGCTCCTAAT 59.247 47.619 20.33 0.00 45.15 1.73
302 303 1.176527 GGCTGTTTGCATGCTCCTAA 58.823 50.000 20.33 1.02 45.15 2.69
303 304 0.680921 GGGCTGTTTGCATGCTCCTA 60.681 55.000 20.33 2.22 45.15 2.94
304 305 1.980772 GGGCTGTTTGCATGCTCCT 60.981 57.895 20.33 0.00 45.15 3.69
305 306 1.538687 AAGGGCTGTTTGCATGCTCC 61.539 55.000 20.33 9.73 45.15 4.70
306 307 1.176527 TAAGGGCTGTTTGCATGCTC 58.823 50.000 20.33 9.94 45.15 4.26
307 308 1.273327 GTTAAGGGCTGTTTGCATGCT 59.727 47.619 20.33 0.00 45.15 3.79
308 309 1.273327 AGTTAAGGGCTGTTTGCATGC 59.727 47.619 11.82 11.82 45.15 4.06
309 310 2.927871 GCAGTTAAGGGCTGTTTGCATG 60.928 50.000 0.00 0.00 45.15 4.06
310 311 1.273327 GCAGTTAAGGGCTGTTTGCAT 59.727 47.619 0.00 0.00 45.15 3.96
311 312 0.673437 GCAGTTAAGGGCTGTTTGCA 59.327 50.000 0.00 0.00 45.15 4.08
312 313 0.673437 TGCAGTTAAGGGCTGTTTGC 59.327 50.000 0.00 0.00 41.94 3.68
313 314 2.094545 GGATGCAGTTAAGGGCTGTTTG 60.095 50.000 0.00 0.00 36.42 2.93
314 315 2.171003 GGATGCAGTTAAGGGCTGTTT 58.829 47.619 0.00 0.00 36.42 2.83
315 316 1.616994 GGGATGCAGTTAAGGGCTGTT 60.617 52.381 0.00 0.00 36.42 3.16
316 317 0.034089 GGGATGCAGTTAAGGGCTGT 60.034 55.000 0.00 0.00 36.42 4.40
317 318 0.257039 AGGGATGCAGTTAAGGGCTG 59.743 55.000 0.00 0.00 37.06 4.85
318 319 0.257039 CAGGGATGCAGTTAAGGGCT 59.743 55.000 0.00 0.00 0.00 5.19
319 320 0.255890 TCAGGGATGCAGTTAAGGGC 59.744 55.000 0.00 0.00 0.00 5.19
320 321 1.561542 AGTCAGGGATGCAGTTAAGGG 59.438 52.381 0.00 0.00 0.00 3.95
321 322 3.452627 AGTAGTCAGGGATGCAGTTAAGG 59.547 47.826 0.00 0.00 0.00 2.69
322 323 4.081420 ACAGTAGTCAGGGATGCAGTTAAG 60.081 45.833 0.00 0.00 0.00 1.85
323 324 3.838317 ACAGTAGTCAGGGATGCAGTTAA 59.162 43.478 0.00 0.00 0.00 2.01
324 325 3.195610 CACAGTAGTCAGGGATGCAGTTA 59.804 47.826 0.00 0.00 0.00 2.24
325 326 2.027745 CACAGTAGTCAGGGATGCAGTT 60.028 50.000 0.00 0.00 0.00 3.16
326 327 1.552337 CACAGTAGTCAGGGATGCAGT 59.448 52.381 0.00 0.00 0.00 4.40
327 328 1.134580 CCACAGTAGTCAGGGATGCAG 60.135 57.143 0.00 0.00 0.00 4.41
328 329 0.904649 CCACAGTAGTCAGGGATGCA 59.095 55.000 0.00 0.00 0.00 3.96
329 330 0.179000 CCCACAGTAGTCAGGGATGC 59.821 60.000 0.00 0.00 44.30 3.91
330 331 0.179000 GCCCACAGTAGTCAGGGATG 59.821 60.000 7.85 0.00 44.30 3.51
331 332 0.252696 TGCCCACAGTAGTCAGGGAT 60.253 55.000 7.85 0.00 44.30 3.85
332 333 1.157513 TGCCCACAGTAGTCAGGGA 59.842 57.895 7.85 0.00 44.30 4.20
333 334 1.296715 GTGCCCACAGTAGTCAGGG 59.703 63.158 0.00 0.00 44.37 4.45
334 335 1.296715 GGTGCCCACAGTAGTCAGG 59.703 63.158 0.40 0.00 0.00 3.86
335 336 1.194781 AGGGTGCCCACAGTAGTCAG 61.195 60.000 10.26 0.00 38.92 3.51
336 337 0.766674 AAGGGTGCCCACAGTAGTCA 60.767 55.000 10.26 0.00 38.92 3.41
337 338 1.272807 TAAGGGTGCCCACAGTAGTC 58.727 55.000 10.26 0.00 38.92 2.59
338 339 1.966845 ATAAGGGTGCCCACAGTAGT 58.033 50.000 10.26 0.00 38.92 2.73
339 340 4.497291 TTAATAAGGGTGCCCACAGTAG 57.503 45.455 10.26 0.00 38.92 2.57
340 341 4.931027 TTTAATAAGGGTGCCCACAGTA 57.069 40.909 10.26 0.00 38.92 2.74
341 342 3.818295 TTTAATAAGGGTGCCCACAGT 57.182 42.857 10.26 0.00 38.92 3.55
342 343 5.675684 ATTTTTAATAAGGGTGCCCACAG 57.324 39.130 10.26 0.00 38.92 3.66
343 344 7.741554 ATTATTTTTAATAAGGGTGCCCACA 57.258 32.000 10.26 0.00 38.92 4.17
362 363 9.301897 GCCAGGGACAAATCTTCTATTATTATT 57.698 33.333 0.00 0.00 0.00 1.40
363 364 8.673251 AGCCAGGGACAAATCTTCTATTATTAT 58.327 33.333 0.00 0.00 0.00 1.28
364 365 8.045720 AGCCAGGGACAAATCTTCTATTATTA 57.954 34.615 0.00 0.00 0.00 0.98
365 366 6.915786 AGCCAGGGACAAATCTTCTATTATT 58.084 36.000 0.00 0.00 0.00 1.40
366 367 6.521527 AGCCAGGGACAAATCTTCTATTAT 57.478 37.500 0.00 0.00 0.00 1.28
367 368 5.975988 AGCCAGGGACAAATCTTCTATTA 57.024 39.130 0.00 0.00 0.00 0.98
368 369 4.870021 AGCCAGGGACAAATCTTCTATT 57.130 40.909 0.00 0.00 0.00 1.73
369 370 4.349342 CCTAGCCAGGGACAAATCTTCTAT 59.651 45.833 0.00 0.00 38.41 1.98
370 371 3.711704 CCTAGCCAGGGACAAATCTTCTA 59.288 47.826 0.00 0.00 38.41 2.10
371 372 2.507471 CCTAGCCAGGGACAAATCTTCT 59.493 50.000 0.00 0.00 38.41 2.85
372 373 2.505819 TCCTAGCCAGGGACAAATCTTC 59.494 50.000 0.00 0.00 42.87 2.87
373 374 2.507471 CTCCTAGCCAGGGACAAATCTT 59.493 50.000 0.00 0.00 42.87 2.40
374 375 2.122768 CTCCTAGCCAGGGACAAATCT 58.877 52.381 0.00 0.00 42.87 2.40
375 376 1.840635 ACTCCTAGCCAGGGACAAATC 59.159 52.381 0.00 0.00 42.87 2.17
376 377 1.561542 CACTCCTAGCCAGGGACAAAT 59.438 52.381 0.00 0.00 42.87 2.32
377 378 0.984230 CACTCCTAGCCAGGGACAAA 59.016 55.000 0.00 0.00 42.87 2.83
378 379 0.116342 TCACTCCTAGCCAGGGACAA 59.884 55.000 0.00 0.00 42.87 3.18
379 380 0.339859 ATCACTCCTAGCCAGGGACA 59.660 55.000 0.00 0.00 42.87 4.02
380 381 2.383442 TATCACTCCTAGCCAGGGAC 57.617 55.000 0.00 0.00 42.87 4.46
381 382 3.039011 GTTTATCACTCCTAGCCAGGGA 58.961 50.000 0.00 0.00 42.87 4.20
386 387 3.623510 GCTGTTGTTTATCACTCCTAGCC 59.376 47.826 0.00 0.00 0.00 3.93
391 392 3.077359 AGCTGCTGTTGTTTATCACTCC 58.923 45.455 0.00 0.00 0.00 3.85
395 396 1.541147 GGCAGCTGCTGTTGTTTATCA 59.459 47.619 35.82 0.00 41.70 2.15
413 414 2.125106 CGGGCTGAACACCTAGGC 60.125 66.667 9.30 0.00 38.62 3.93
459 463 1.203994 CTTCGGGCCTTCTTCTTCGTA 59.796 52.381 0.84 0.00 0.00 3.43
715 4390 2.436646 CCTTGTACCAGGCGCAGG 60.437 66.667 10.83 13.73 0.00 4.85
716 4391 1.741770 GTCCTTGTACCAGGCGCAG 60.742 63.158 10.83 0.00 33.35 5.18
814 4490 5.370679 GGTAATTAGAAATTACCCAGCGGA 58.629 41.667 22.64 0.00 44.73 5.54
870 4552 7.271223 CGTAGCAAAATCCATCAACTTAACTTG 59.729 37.037 0.00 0.00 0.00 3.16
873 4555 6.837992 TCGTAGCAAAATCCATCAACTTAAC 58.162 36.000 0.00 0.00 0.00 2.01
896 4578 7.964604 ACTAGAAATAATAGCGGGTGAATTC 57.035 36.000 0.00 0.00 0.00 2.17
922 4604 9.653067 CAAAGTACGTACATAAAACATGACAAA 57.347 29.630 26.55 0.00 0.00 2.83
923 4605 8.828644 ACAAAGTACGTACATAAAACATGACAA 58.171 29.630 26.55 0.00 0.00 3.18
924 4606 8.367943 ACAAAGTACGTACATAAAACATGACA 57.632 30.769 26.55 0.00 0.00 3.58
925 4607 9.098746 CAACAAAGTACGTACATAAAACATGAC 57.901 33.333 26.55 0.00 0.00 3.06
926 4608 8.283992 CCAACAAAGTACGTACATAAAACATGA 58.716 33.333 26.55 0.00 0.00 3.07
927 4609 8.283992 TCCAACAAAGTACGTACATAAAACATG 58.716 33.333 26.55 11.68 0.00 3.21
928 4610 8.380743 TCCAACAAAGTACGTACATAAAACAT 57.619 30.769 26.55 1.16 0.00 2.71
929 4611 7.783090 TCCAACAAAGTACGTACATAAAACA 57.217 32.000 26.55 2.45 0.00 2.83
930 4612 9.962759 CTATCCAACAAAGTACGTACATAAAAC 57.037 33.333 26.55 0.98 0.00 2.43
931 4613 9.709495 ACTATCCAACAAAGTACGTACATAAAA 57.291 29.630 26.55 5.63 0.00 1.52
932 4614 9.709495 AACTATCCAACAAAGTACGTACATAAA 57.291 29.630 26.55 5.04 0.00 1.40
933 4615 9.142515 CAACTATCCAACAAAGTACGTACATAA 57.857 33.333 26.55 4.56 0.00 1.90
934 4616 8.522003 TCAACTATCCAACAAAGTACGTACATA 58.478 33.333 26.55 12.03 0.00 2.29
935 4617 7.380536 TCAACTATCCAACAAAGTACGTACAT 58.619 34.615 26.55 13.27 0.00 2.29
936 4618 6.747125 TCAACTATCCAACAAAGTACGTACA 58.253 36.000 26.55 4.56 0.00 2.90
937 4619 6.183360 GCTCAACTATCCAACAAAGTACGTAC 60.183 42.308 18.10 18.10 0.00 3.67
938 4620 5.865552 GCTCAACTATCCAACAAAGTACGTA 59.134 40.000 0.00 0.00 0.00 3.57
939 4621 4.689345 GCTCAACTATCCAACAAAGTACGT 59.311 41.667 0.00 0.00 0.00 3.57
940 4622 4.688879 TGCTCAACTATCCAACAAAGTACG 59.311 41.667 0.00 0.00 0.00 3.67
971 4653 4.273480 GGTCGTGGATGGATGTAGAATTTG 59.727 45.833 0.00 0.00 0.00 2.32
1157 4879 0.330604 AGCAGGTCGTGGTAGTAGGA 59.669 55.000 0.00 0.00 34.15 2.94
1334 5077 3.074412 CGGAACAAGAATAGTGTTGGCT 58.926 45.455 5.01 0.00 39.29 4.75
1472 7420 6.212791 TGCCCATACAAGTAGAAACTTCTAGT 59.787 38.462 0.00 0.54 44.28 2.57
1592 7543 9.267071 ACCCTGCCTATAAAAGAAAACATTAAT 57.733 29.630 0.00 0.00 0.00 1.40
1716 7668 6.695245 GCAATAGGATATTTTGCAAAACACG 58.305 36.000 26.05 8.85 43.95 4.49
1780 7732 1.732259 GTTGTGCTCTATCAACGGTGG 59.268 52.381 0.00 0.00 35.41 4.61
1914 7873 5.163612 GGATAATCACAACCCTTTTCTGCTC 60.164 44.000 0.00 0.00 0.00 4.26
2033 8001 5.477510 GGCTCATCCAGAAGTATGTATCAG 58.522 45.833 0.00 0.00 34.01 2.90
2120 8102 5.863397 TGCACAAAATACAGAAAGCATTAGC 59.137 36.000 0.00 0.00 42.56 3.09
2146 8128 3.420893 CCTTCATAACAGGTTCAGCCAA 58.579 45.455 0.00 0.00 40.61 4.52
2348 8408 3.303938 AGCTGATCTGGCTGTAGTATGT 58.696 45.455 11.77 0.00 38.73 2.29
2359 8419 5.877012 TCTAGCAAGTAAAAAGCTGATCTGG 59.123 40.000 1.46 0.00 39.30 3.86
2446 8506 1.977854 ACTATGTGGCTCACCTGTTGA 59.022 47.619 0.00 0.00 36.63 3.18
2473 8533 6.700352 TCGATACAATCATTCATAGCCATGA 58.300 36.000 0.00 0.00 39.47 3.07
2500 8560 5.767816 ATGGGCGGTTATTTACTGAATTC 57.232 39.130 0.00 0.00 34.90 2.17
2642 8762 4.284234 AGGGTCAGCATTGTAAGCAAAATT 59.716 37.500 0.00 0.00 38.21 1.82
2653 8773 4.275196 CACAATATCAGAGGGTCAGCATTG 59.725 45.833 0.00 0.00 0.00 2.82
2654 8774 4.080129 ACACAATATCAGAGGGTCAGCATT 60.080 41.667 0.00 0.00 0.00 3.56
2744 8884 9.653287 CACTTTACCAATACTGATCTTAACAGA 57.347 33.333 0.00 0.00 38.55 3.41
2775 8915 6.913170 AGTAATAGTGTGGAAGCAAAACATG 58.087 36.000 0.00 0.00 0.00 3.21
2836 8980 7.811236 CACTTTTGTGTGAAAGCATGATCTTAT 59.189 33.333 0.00 0.00 44.94 1.73
3045 9189 2.935201 GTGCATGACTTCAGATCCTCAC 59.065 50.000 0.00 0.00 0.00 3.51
3101 9245 4.399934 GGTGTTCCAACCTTCACTAACAAA 59.600 41.667 0.00 0.00 37.24 2.83
3321 11915 9.357161 CCATATCACTTCCTACTACTTTCTACT 57.643 37.037 0.00 0.00 0.00 2.57
3322 11916 9.352191 TCCATATCACTTCCTACTACTTTCTAC 57.648 37.037 0.00 0.00 0.00 2.59
3323 11917 9.931698 TTCCATATCACTTCCTACTACTTTCTA 57.068 33.333 0.00 0.00 0.00 2.10
3324 11918 8.840200 TTCCATATCACTTCCTACTACTTTCT 57.160 34.615 0.00 0.00 0.00 2.52
3325 11919 9.482627 CATTCCATATCACTTCCTACTACTTTC 57.517 37.037 0.00 0.00 0.00 2.62
3326 11920 9.213777 TCATTCCATATCACTTCCTACTACTTT 57.786 33.333 0.00 0.00 0.00 2.66
3327 11921 8.783660 TCATTCCATATCACTTCCTACTACTT 57.216 34.615 0.00 0.00 0.00 2.24
3328 11922 8.007742 ACTCATTCCATATCACTTCCTACTACT 58.992 37.037 0.00 0.00 0.00 2.57
3558 12202 9.985730 AGTCGTATAGAGATATATGGCTACTAC 57.014 37.037 0.00 0.00 33.50 2.73
3717 12483 4.099881 ACATGCACTTCAATTTCCAGTTGT 59.900 37.500 0.00 0.00 0.00 3.32
3848 12798 7.512992 AGTGCAGCATTAGAGGTTATAAGAAT 58.487 34.615 0.00 0.00 0.00 2.40
3859 12811 3.069289 TGTCACAAGTGCAGCATTAGAG 58.931 45.455 0.00 0.00 0.00 2.43
3909 12862 1.832167 TTGCTTGGCTGGGGTGTTC 60.832 57.895 0.00 0.00 0.00 3.18
4221 13209 6.074005 GTCATTCTTTCAGAGTTACAAAGCG 58.926 40.000 0.00 0.00 0.00 4.68
4397 13877 5.030091 TCAAATAATGACCCGTAGCGTAGC 61.030 45.833 0.00 0.00 44.76 3.58
4398 13878 4.613944 TCAAATAATGACCCGTAGCGTAG 58.386 43.478 0.00 0.00 31.50 3.51
4399 13879 4.652421 TCAAATAATGACCCGTAGCGTA 57.348 40.909 0.00 0.00 31.50 4.42
4400 13880 3.530265 TCAAATAATGACCCGTAGCGT 57.470 42.857 0.00 0.00 31.50 5.07
4525 14051 0.979665 TGTTCTTGAGGCCTCAGAGG 59.020 55.000 33.16 25.48 41.13 3.69
4597 16952 9.299963 TCAATTAGTGATTTTCTTTTGTGTGTG 57.700 29.630 0.00 0.00 0.00 3.82
4820 17557 3.462678 GACCCTGGACGAGGAGGC 61.463 72.222 4.84 0.00 46.33 4.70
4822 17559 2.115911 CGAGACCCTGGACGAGGAG 61.116 68.421 4.84 0.00 46.33 3.69
4911 17648 1.956297 TTTGGAAAGGCGACGAAAGA 58.044 45.000 0.00 0.00 0.00 2.52
4918 17655 0.802494 GCGAGATTTTGGAAAGGCGA 59.198 50.000 0.00 0.00 0.00 5.54
4970 17707 2.450345 GCGCCGCCAACAGTACTAC 61.450 63.158 0.00 0.00 0.00 2.73
4971 17708 2.125832 GCGCCGCCAACAGTACTA 60.126 61.111 0.00 0.00 0.00 1.82
5109 17852 2.393768 CCGACATCAGTGCAGGTGC 61.394 63.158 0.00 0.00 42.50 5.01
5110 17853 2.393768 GCCGACATCAGTGCAGGTG 61.394 63.158 0.00 0.00 0.00 4.00
5111 17854 2.046892 GCCGACATCAGTGCAGGT 60.047 61.111 0.00 0.00 0.00 4.00
5152 17925 2.564975 GACGTGGACATCGTCGGT 59.435 61.111 0.00 0.00 45.64 4.69
5172 17945 0.615850 CCAAGACCAAGAGGAGGACC 59.384 60.000 0.00 0.00 38.69 4.46
5202 18014 0.595095 GCAGCTGGACAAGTTCCTTG 59.405 55.000 17.12 2.54 46.10 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.