AutoCloner

Multiple sequence alignment - TraesCS4A01G054600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G054600	chr4A	100.000	3263	0	0	1	3263	45870073	45873335	0.000000e+00	6026.0
1	TraesCS4A01G054600	chr5A	89.059	1636	83	21	1	1548	491567824	491569451	0.000000e+00	1941.0
2	TraesCS4A01G054600	chr5A	92.330	1043	66	8	1984	3017	491569980	491571017	0.000000e+00	1471.0
3	TraesCS4A01G054600	chr5A	89.641	502	35	5	1464	1948	491584511	491585012	9.940000e-175	623.0
4	TraesCS4A01G054600	chr5A	90.724	442	27	3	1557	1984	491569490	491569931	7.850000e-161	577.0
5	TraesCS4A01G054600	chr5A	86.817	531	38	15	1480	1984	489677947	489678471	6.110000e-157	564.0
6	TraesCS4A01G054600	chr5A	88.608	474	33	10	1015	1467	491584002	491584475	1.020000e-154	556.0
7	TraesCS4A01G054600	chr5A	90.376	426	30	6	2427	2848	491585766	491586184	1.710000e-152	549.0
8	TraesCS4A01G054600	chr5A	86.064	531	42	12	1480	1984	489662023	489662547	2.860000e-150	542.0
9	TraesCS4A01G054600	chr5A	87.292	480	35	10	1015	1469	489677428	489677906	2.880000e-145	525.0
10	TraesCS4A01G054600	chr5A	86.392	485	33	15	1015	1469	489661501	489661982	1.750000e-137	499.0
11	TraesCS4A01G054600	chr5A	84.133	271	15	8	1025	1270	489749291	489749558	1.510000e-58	237.0
12	TraesCS4A01G054600	chr5A	85.106	141	6	8	2097	2223	489678550	489678689	2.640000e-26	130.0
13	TraesCS4A01G054600	chr5A	89.888	89	5	3	2080	2164	489682797	489682885	9.570000e-21	111.0
14	TraesCS4A01G054600	chr5A	93.333	45	3	0	832	876	491583710	491583754	2.100000e-07	67.6
15	TraesCS4A01G054600	chr5D	93.755	1297	39	17	1998	3263	388381993	388383278	0.000000e+00	1908.0
16	TraesCS4A01G054600	chr5D	84.211	893	79	18	2428	3261	353955523	353956412	0.000000e+00	811.0
17	TraesCS4A01G054600	chr5D	90.948	464	34	5	2413	2876	353968293	353968748	4.630000e-173	617.0
18	TraesCS4A01G054600	chr5D	87.453	534	50	10	1461	1984	388592427	388592953	1.680000e-167	599.0
19	TraesCS4A01G054600	chr5D	81.997	761	57	38	772	1466	388380481	388381227	1.020000e-159	573.0
20	TraesCS4A01G054600	chr5D	88.913	469	34	6	1016	1469	370777559	370778024	2.200000e-156	562.0
21	TraesCS4A01G054600	chr5D	90.205	439	26	4	1557	1984	388381378	388381810	1.020000e-154	556.0
22	TraesCS4A01G054600	chr5D	88.382	482	29	9	1015	1469	388411805	388412286	3.680000e-154	555.0
23	TraesCS4A01G054600	chr5D	90.610	426	29	5	2427	2848	388596304	388596722	3.680000e-154	555.0
24	TraesCS4A01G054600	chr5D	82.197	719	55	30	805	1469	386958192	386958891	4.760000e-153	551.0
25	TraesCS4A01G054600	chr5D	89.412	425	31	4	1565	1984	388412454	388412869	1.040000e-144	523.0
26	TraesCS4A01G054600	chr5D	82.472	542	48	26	965	1469	388591866	388592397	6.470000e-117	431.0
27	TraesCS4A01G054600	chr5D	85.616	292	17	9	2127	2405	353955012	353955291	1.920000e-72	283.0
28	TraesCS4A01G054600	chr5D	83.916	286	22	7	2131	2405	388595966	388596238	5.400000e-63	252.0
29	TraesCS4A01G054600	chr5D	85.987	157	10	7	2079	2223	386959584	386959740	1.210000e-34	158.0
30	TraesCS4A01G054600	chr5B	82.775	1074	72	47	1015	1984	465053837	465054901	0.000000e+00	854.0
31	TraesCS4A01G054600	chr5B	85.106	752	46	23	772	1466	467019101	467019843	0.000000e+00	708.0
32	TraesCS4A01G054600	chr5B	88.091	529	35	12	1480	1984	467019893	467020417	1.300000e-168	603.0
33	TraesCS4A01G054600	chr5B	89.835	423	35	5	2427	2848	467021229	467021644	1.330000e-148	536.0
34	TraesCS4A01G054600	chr5B	90.551	127	10	2	2280	2405	467021038	467021163	2.010000e-37	167.0
35	TraesCS4A01G054600	chr5B	85.106	141	6	8	2097	2223	465054979	465055118	2.640000e-26	130.0
36	TraesCS4A01G054600	chr6A	89.298	598	49	5	200	782	130412010	130412607	0.000000e+00	736.0
37	TraesCS4A01G054600	chr6A	84.380	685	34	33	831	1455	130412592	130413263	3.600000e-169	604.0
38	TraesCS4A01G054600	chr6A	85.199	554	46	19	1461	1984	130413307	130413854	1.330000e-148	536.0
39	TraesCS4A01G054600	chr6A	91.150	113	8	2	1	113	130410035	130410145	5.640000e-33	152.0
40	TraesCS4A01G054600	chr6A	94.048	84	5	0	112	195	130410176	130410259	9.500000e-26	128.0
41	TraesCS4A01G054600	chr6D	89.493	533	50	2	113	639	106946230	106946762	0.000000e+00	669.0
42	TraesCS4A01G054600	chr6D	84.127	693	37	28	831	1466	106951511	106952187	1.300000e-168	603.0
43	TraesCS4A01G054600	chr6D	87.835	485	29	7	1015	1469	60556929	60556445	2.860000e-150	542.0
44	TraesCS4A01G054600	chr6D	90.780	141	4	2	651	782	106951386	106951526	2.590000e-41	180.0
45	TraesCS4A01G054600	chr6D	95.327	107	3	2	1	107	106946088	106946192	5.600000e-38	169.0
46	TraesCS4A01G054600	chr6D	92.391	92	3	3	2080	2167	60555737	60555646	9.500000e-26	128.0
47	TraesCS4A01G054600	chr6D	94.872	39	2	0	67	105	290593908	290593870	9.780000e-06	62.1
48	TraesCS4A01G054600	chr6D	94.595	37	2	0	65	101	33882525	33882489	1.260000e-04	58.4
49	TraesCS4A01G054600	chr6D	92.308	39	2	1	66	104	390602564	390602601	2.000000e-03	54.7
50	TraesCS4A01G054600	chr4B	91.702	470	32	5	2413	2875	31872248	31871779	0.000000e+00	645.0
51	TraesCS4A01G054600	chr4B	89.313	393	29	6	2881	3261	31871726	31871335	6.330000e-132	481.0
52	TraesCS4A01G054600	chr4B	90.960	177	16	0	3085	3261	356000983	356000807	4.210000e-59	239.0
53	TraesCS4A01G054600	chr7D	85.654	474	41	4	1018	1467	437592158	437592628	1.060000e-129	473.0
54	TraesCS4A01G054600	chr7D	86.560	439	38	9	1557	1984	437592778	437593206	6.380000e-127	464.0
55	TraesCS4A01G054600	chr7B	85.535	477	42	4	1015	1467	456502684	456502211	1.060000e-129	473.0
56	TraesCS4A01G054600	chr6B	93.258	178	11	1	3085	3261	16472852	16473029	8.980000e-66	261.0
57	TraesCS4A01G054600	chr6B	91.429	175	15	0	3087	3261	445510304	445510130	1.170000e-59	241.0
58	TraesCS4A01G054600	chr3D	82.738	168	27	2	3082	3247	554067118	554067285	7.290000e-32	148.0
59	TraesCS4A01G054600	chr3D	94.595	37	2	0	69	105	75151156	75151192	1.260000e-04	58.4
60	TraesCS4A01G054600	chr1B	92.308	39	3	0	63	101	438042892	438042854	4.550000e-04	56.5
61	TraesCS4A01G054600	chr1D	90.476	42	3	1	60	101	58811571	58811531	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G054600	chr4A	45870073	45873335	3262	False	6026.000000	6026	100.000000	1	3263	1	chr4A.!!$F1	3262
1	TraesCS4A01G054600	chr5A	491567824	491571017	3193	False	1329.666667	1941	90.704333	1	3017	3	chr5A.!!$F5	3016
2	TraesCS4A01G054600	chr5A	489661501	489662547	1046	False	520.500000	542	86.228000	1015	1984	2	chr5A.!!$F3	969
3	TraesCS4A01G054600	chr5A	491583710	491586184	2474	False	448.900000	623	90.489500	832	2848	4	chr5A.!!$F6	2016
4	TraesCS4A01G054600	chr5A	489677428	489678689	1261	False	406.333333	564	86.405000	1015	2223	3	chr5A.!!$F4	1208
5	TraesCS4A01G054600	chr5D	388380481	388383278	2797	False	1012.333333	1908	88.652333	772	3263	3	chr5D.!!$F5	2491
6	TraesCS4A01G054600	chr5D	353955012	353956412	1400	False	547.000000	811	84.913500	2127	3261	2	chr5D.!!$F3	1134
7	TraesCS4A01G054600	chr5D	388411805	388412869	1064	False	539.000000	555	88.897000	1015	1984	2	chr5D.!!$F6	969
8	TraesCS4A01G054600	chr5D	388591866	388596722	4856	False	459.250000	599	86.112750	965	2848	4	chr5D.!!$F7	1883
9	TraesCS4A01G054600	chr5D	386958192	386959740	1548	False	354.500000	551	84.092000	805	2223	2	chr5D.!!$F4	1418
10	TraesCS4A01G054600	chr5B	467019101	467021644	2543	False	503.500000	708	88.395750	772	2848	4	chr5B.!!$F2	2076
11	TraesCS4A01G054600	chr5B	465053837	465055118	1281	False	492.000000	854	83.940500	1015	2223	2	chr5B.!!$F1	1208
12	TraesCS4A01G054600	chr6A	130410035	130413854	3819	False	431.200000	736	88.815000	1	1984	5	chr6A.!!$F1	1983
13	TraesCS4A01G054600	chr6D	106946088	106946762	674	False	419.000000	669	92.410000	1	639	2	chr6D.!!$F2	638
14	TraesCS4A01G054600	chr6D	106951386	106952187	801	False	391.500000	603	87.453500	651	1466	2	chr6D.!!$F3	815
15	TraesCS4A01G054600	chr6D	60555646	60556929	1283	True	335.000000	542	90.113000	1015	2167	2	chr6D.!!$R3	1152
16	TraesCS4A01G054600	chr4B	31871335	31872248	913	True	563.000000	645	90.507500	2413	3261	2	chr4B.!!$R2	848
17	TraesCS4A01G054600	chr7D	437592158	437593206	1048	False	468.500000	473	86.107000	1018	1984	2	chr7D.!!$F1	966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
586	2371	0.106918	TCACTTCCAAACGGCCAACT	60.107	50.0	2.24	0.0	0.0	3.16	F
1330	3360	0.257039	GAATCCCATGCACTCCCTGT	59.743	55.0	0.00	0.0	0.0	4.00	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1722	3908	0.179163	CGCCTTTCCAAAATCTCGCC	60.179	55.0	0.0	0.0	0.00	5.54	R
2751	8741	0.677731	TGGAAAGCCTTGATGGAGCG	60.678	55.0	0.0	0.0	38.35	5.03	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
126	159	5.497464	TTGTGGTATTGTCTGGAATCTCA	57.503	39.130	0.00	0.00	0.00	3.27
176	209	2.221299	CCACCCCGACTCCTTTCCA	61.221	63.158	0.00	0.00	0.00	3.53
216	1995	1.643310	GGCCTCATCTAGCCTCATCT	58.357	55.000	0.00	0.00	46.14	2.90
218	1997	1.969923	GCCTCATCTAGCCTCATCTGT	59.030	52.381	0.00	0.00	0.00	3.41
251	2030	4.007457	CCATTGCTGGTGGGTGAG	57.993	61.111	0.00	0.00	37.79	3.51
298	2077	1.585006	GTGAGACATCGTCCCGTGT	59.415	57.895	0.00	0.00	32.18	4.49
315	2094	2.922503	TGAGCGCTCAAGGTGGGA	60.923	61.111	36.62	11.90	36.53	4.37
318	2097	2.032681	GCGCTCAAGGTGGGAACT	59.967	61.111	0.00	0.00	0.00	3.01
320	2099	1.371183	CGCTCAAGGTGGGAACTCA	59.629	57.895	0.00	0.00	0.00	3.41
374	2158	3.454587	AAGGTGCCGAAGCGTCACA	62.455	57.895	3.46	0.00	44.31	3.58
440	2224	2.987125	GCCCCTTCAGGCGAGTAA	59.013	61.111	0.00	0.00	44.57	2.24
479	2263	1.159285	CCACATGCTACACACACCTG	58.841	55.000	0.00	0.00	0.00	4.00
487	2271	0.834261	TACACACACCTGCCCTGCTA	60.834	55.000	0.00	0.00	0.00	3.49
547	2332	1.378514	CCCAACTATTGCCACGCCT	60.379	57.895	0.00	0.00	0.00	5.52
549	2334	0.676466	CCAACTATTGCCACGCCTCA	60.676	55.000	0.00	0.00	0.00	3.86
552	2337	1.153289	CTATTGCCACGCCTCAGCT	60.153	57.895	0.00	0.00	36.60	4.24
569	2354	2.293122	CAGCTCCACGGTTTTCAATTCA	59.707	45.455	0.00	0.00	0.00	2.57
581	2366	3.363341	TTCAATTCACTTCCAAACGGC	57.637	42.857	0.00	0.00	0.00	5.68
586	2371	0.106918	TCACTTCCAAACGGCCAACT	60.107	50.000	2.24	0.00	0.00	3.16
588	2373	1.106944	ACTTCCAAACGGCCAACTGG	61.107	55.000	2.24	5.51	38.53	4.00
624	2409	4.817987	ATTCGTGTCGACGTGAATAAAG	57.182	40.909	24.94	5.15	46.20	1.85
778	2574	7.038659	ACTCAGTGACATAATAAGCTTGAGAC	58.961	38.462	9.86	0.00	0.00	3.36
959	2845	4.262420	GGATCACAAAGCTTTAAAAGGCCA	60.262	41.667	12.25	0.00	0.00	5.36
962	2848	4.588528	TCACAAAGCTTTAAAAGGCCATCT	59.411	37.500	12.25	0.00	0.00	2.90
963	2849	4.687483	CACAAAGCTTTAAAAGGCCATCTG	59.313	41.667	12.25	0.00	0.00	2.90
1068	3032	1.453762	GGAGCCCTTCAGCATCATGC	61.454	60.000	0.00	0.00	45.46	4.06
1304	3334	0.995024	ACCTCACCAAGCTAGCCAAT	59.005	50.000	12.13	0.00	0.00	3.16
1321	3351	2.621998	CCAATCTGTCTGAATCCCATGC	59.378	50.000	0.00	0.00	0.00	4.06
1330	3360	0.257039	GAATCCCATGCACTCCCTGT	59.743	55.000	0.00	0.00	0.00	4.00
1458	3488	0.595095	GCAGCTGGACAAGTTCCTTG	59.405	55.000	17.12	2.54	46.10	3.61
1488	3596	0.615850	CCAAGACCAAGAGGAGGACC	59.384	60.000	0.00	0.00	38.69	4.46
1508	3616	2.564975	GACGTGGACATCGTCGGT	59.435	61.111	0.00	0.00	45.64	4.69
1548	3656	2.821366	GGCCGACATCAGTGCAGG	60.821	66.667	0.00	0.00	0.00	4.85
1550	3658	2.393768	GCCGACATCAGTGCAGGTG	61.394	63.158	0.00	0.00	0.00	4.00
1742	3928	0.802494	GCGAGATTTTGGAAAGGCGA	59.198	50.000	0.00	0.00	0.00	5.54
1749	3935	1.956297	TTTGGAAAGGCGACGAAAGA	58.044	45.000	0.00	0.00	0.00	2.52
1840	4026	3.462678	GACCCTGGACGAGGAGGC	61.463	72.222	4.84	0.00	46.33	4.70
2063	4645	9.299963	TCAATTAGTGATTTTCTTTTGTGTGTG	57.700	29.630	0.00	0.00	0.00	3.82
2135	7575	0.979665	TGTTCTTGAGGCCTCAGAGG	59.020	55.000	33.16	25.48	41.13	3.69
2260	7722	3.530265	TCAAATAATGACCCGTAGCGT	57.470	42.857	0.00	0.00	31.50	5.07
2261	7723	4.652421	TCAAATAATGACCCGTAGCGTA	57.348	40.909	0.00	0.00	31.50	4.42
2262	7724	4.613944	TCAAATAATGACCCGTAGCGTAG	58.386	43.478	0.00	0.00	31.50	3.51
2263	7725	5.030091	TCAAATAATGACCCGTAGCGTAGC	61.030	45.833	0.00	0.00	44.76	3.58
2439	8391	6.074005	GTCATTCTTTCAGAGTTACAAAGCG	58.926	40.000	0.00	0.00	0.00	4.68
2751	8741	1.832167	TTGCTTGGCTGGGGTGTTC	60.832	57.895	0.00	0.00	0.00	3.18
2801	8792	3.069289	TGTCACAAGTGCAGCATTAGAG	58.931	45.455	0.00	0.00	0.00	2.43
2802	8793	2.417933	GTCACAAGTGCAGCATTAGAGG	59.582	50.000	0.00	0.00	0.00	3.69
2812	8805	7.512992	AGTGCAGCATTAGAGGTTATAAGAAT	58.487	34.615	0.00	0.00	0.00	2.40
2943	8988	4.099881	ACATGCACTTCAATTTCCAGTTGT	59.900	37.500	0.00	0.00	0.00	3.32
3102	9185	9.985730	AGTCGTATAGAGATATATGGCTACTAC	57.014	37.037	0.00	0.00	33.50	2.73

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
126	159	4.316823	TCGGGGCAGAGAGGGTGT	62.317	66.667	0.00	0.00	0.00	4.16
216	1995	0.761187	GGGATAGAGCATGAGCCACA	59.239	55.000	0.00	0.00	43.56	4.17
218	1997	1.738474	ATGGGATAGAGCATGAGCCA	58.262	50.000	0.00	0.00	43.56	4.75
251	2030	1.282930	GCGAGGTGAACTCAACGGTC	61.283	60.000	0.00	0.00	46.98	4.79
298	2077	2.515979	TTCCCACCTTGAGCGCTCA	61.516	57.895	35.30	35.30	37.91	4.26
315	2094	2.902486	TCCTGACATGAAGCTCTGAGTT	59.098	45.455	6.53	0.00	0.00	3.01
318	2097	2.433604	GGATCCTGACATGAAGCTCTGA	59.566	50.000	3.84	0.00	0.00	3.27
320	2099	2.475155	TGGATCCTGACATGAAGCTCT	58.525	47.619	14.23	0.00	0.00	4.09
345	2124	4.085876	GCACCTTGGTGCTCACAT	57.914	55.556	30.77	0.00	46.04	3.21
374	2158	1.202758	TCTGGTGTCGCAATGGACTTT	60.203	47.619	4.12	0.00	37.81	2.66
479	2263	1.303309	CATTGTAGCAGTAGCAGGGC	58.697	55.000	0.00	0.00	45.49	5.19
487	2271	2.899900	TGTGAGAGGACATTGTAGCAGT	59.100	45.455	0.00	0.00	0.00	4.40
547	2332	2.270352	ATTGAAAACCGTGGAGCTGA	57.730	45.000	0.00	0.00	0.00	4.26
549	2334	2.293399	GTGAATTGAAAACCGTGGAGCT	59.707	45.455	0.00	0.00	0.00	4.09
552	2337	3.316868	GGAAGTGAATTGAAAACCGTGGA	59.683	43.478	0.00	0.00	0.00	4.02
555	2340	4.993029	TTGGAAGTGAATTGAAAACCGT	57.007	36.364	0.00	0.00	0.00	4.83
569	2354	1.106944	CCAGTTGGCCGTTTGGAAGT	61.107	55.000	12.55	0.00	37.49	3.01
581	2366	4.550076	TCCAAATTTTATGGCCAGTTGG	57.450	40.909	13.05	16.46	37.88	3.77
586	2371	5.174395	CACGAATTCCAAATTTTATGGCCA	58.826	37.500	8.56	8.56	37.88	5.36
588	2373	5.004345	CGACACGAATTCCAAATTTTATGGC	59.996	40.000	0.00	0.00	37.88	4.40
778	2574	1.438651	TTCTCCCATTTCGTCTTGCG	58.561	50.000	0.00	0.00	43.01	4.85
902	2776	1.565156	GCCGTGTTTGCTGTGATCGA	61.565	55.000	0.00	0.00	0.00	3.59
963	2849	0.039618	TGGGAAAGATTGGAGGTGCC	59.960	55.000	0.00	0.00	37.10	5.01
1182	3176	2.364317	CTCCTCGGCTGGAAGGGA	60.364	66.667	0.60	0.00	35.43	4.20
1243	3273	1.002366	CTTGGGCGTCATCTTCTTCG	58.998	55.000	0.00	0.00	0.00	3.79
1304	3334	1.911357	AGTGCATGGGATTCAGACAGA	59.089	47.619	0.00	0.00	0.00	3.41
1321	3351	3.041211	TCCAGGATATGAACAGGGAGTG	58.959	50.000	0.00	0.00	0.00	3.51
1330	3360	2.401568	TCAGCAGCTCCAGGATATGAA	58.598	47.619	0.00	0.00	0.00	2.57
1458	3488	2.371259	GGTCTTGGGCCCTCTCTCC	61.371	68.421	25.70	14.95	0.00	3.71
1508	3616	2.282180	GGCAAAAGGGAGACGCCA	60.282	61.111	0.00	0.00	42.50	5.69
1722	3908	0.179163	CGCCTTTCCAAAATCTCGCC	60.179	55.000	0.00	0.00	0.00	5.54
1742	3928	0.602060	GGGACGTCTCCTTCTTTCGT	59.398	55.000	16.46	0.00	36.68	3.85
1769	3955	2.177594	CTTGCTGACGGGCCTTCTCT	62.178	60.000	11.67	0.00	0.00	3.10
1840	4026	4.228097	CAATGCCGAGCGCCTTCG	62.228	66.667	11.71	11.71	40.18	3.79
1948	4169	7.234355	TCCTCTAAATCTTCTTGGAAGCTTTT	58.766	34.615	0.00	11.23	0.00	2.27
2063	4645	0.929615	GCAACACCACAAACATGTGC	59.070	50.000	0.00	0.00	38.40	4.57
2135	7575	2.279741	TCAATCATGCTTACACGCCTC	58.720	47.619	0.00	0.00	0.00	4.70
2260	7722	1.736645	GCAAACGTCTCAGGCGCTA	60.737	57.895	7.64	0.00	0.00	4.26
2261	7723	2.996168	AAGCAAACGTCTCAGGCGCT	62.996	55.000	7.64	0.00	0.00	5.92
2262	7724	2.500183	GAAGCAAACGTCTCAGGCGC	62.500	60.000	0.00	0.00	0.00	6.53
2263	7725	0.946221	AGAAGCAAACGTCTCAGGCG	60.946	55.000	0.00	0.00	27.15	5.52
2264	7726	1.069636	CAAGAAGCAAACGTCTCAGGC	60.070	52.381	0.00	0.00	33.10	4.85
2354	8096	4.033587	GCATTCTTACCGCATCTCGTTTTA	59.966	41.667	0.00	0.00	36.19	1.52
2417	8201	5.385617	CCGCTTTGTAACTCTGAAAGAATG	58.614	41.667	0.00	0.00	46.34	2.67
2439	8391	2.202987	CAGACCGCTGCAGATCCC	60.203	66.667	20.43	3.05	34.95	3.85
2606	8572	2.032528	CTCTTCTTGGCACGCCCA	59.967	61.111	5.42	0.00	43.51	5.36
2751	8741	0.677731	TGGAAAGCCTTGATGGAGCG	60.678	55.000	0.00	0.00	38.35	5.03
2812	8805	8.500773	GTTTATCGTGTCATACTTTGAAAAGGA	58.499	33.333	7.65	0.00	40.31	3.36
2943	8988	2.159310	GCATATTTTGGGTTGCGTGCTA	60.159	45.455	0.00	0.00	0.00	3.49
3102	9185	7.814107	ACTGTTGTTTAGCATGATATTTTGGTG	59.186	33.333	0.00	0.00	0.00	4.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.