Multiple sequence alignment - TraesCS4A01G054300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G054300 chr4A 100.000 3888 0 0 1 3888 45734253 45738140 0.000000e+00 7180.0
1 TraesCS4A01G054300 chr4A 96.431 2494 50 22 1011 3493 45469052 45466587 0.000000e+00 4076.0
2 TraesCS4A01G054300 chr4A 85.457 1334 114 43 1560 2850 45366268 45364972 0.000000e+00 1315.0
3 TraesCS4A01G054300 chr4A 92.687 588 31 8 994 1574 45367014 45366432 0.000000e+00 837.0
4 TraesCS4A01G054300 chr4A 84.919 431 43 12 3213 3627 45363799 45363375 2.160000e-112 416.0
5 TraesCS4A01G054300 chr4A 84.655 391 55 5 430 815 513090124 513090514 6.090000e-103 385.0
6 TraesCS4A01G054300 chr4A 87.179 234 22 8 3397 3627 45465538 45465310 3.850000e-65 259.0
7 TraesCS4A01G054300 chr4A 82.222 270 32 10 2854 3111 589470865 589471130 6.540000e-53 219.0
8 TraesCS4A01G054300 chr4A 89.412 85 5 2 344 424 45376425 45376341 1.910000e-18 104.0
9 TraesCS4A01G054300 chr4B 90.855 2526 147 43 814 3280 517008921 517006421 0.000000e+00 3308.0
10 TraesCS4A01G054300 chr4B 90.218 1881 98 29 814 2644 517082050 517080206 0.000000e+00 2375.0
11 TraesCS4A01G054300 chr4B 92.249 1445 83 14 1005 2439 517171408 517172833 0.000000e+00 2021.0
12 TraesCS4A01G054300 chr4B 92.874 1305 71 8 814 2098 517129580 517128278 0.000000e+00 1875.0
13 TraesCS4A01G054300 chr4B 85.283 795 50 35 2093 2857 517127231 517126474 0.000000e+00 758.0
14 TraesCS4A01G054300 chr4B 92.151 344 23 3 3549 3888 516975459 516975116 2.100000e-132 483.0
15 TraesCS4A01G054300 chr4B 88.304 171 17 2 260 427 517084473 517084303 6.590000e-48 202.0
16 TraesCS4A01G054300 chr4B 88.095 168 16 3 260 424 517009078 517008912 3.060000e-46 196.0
17 TraesCS4A01G054300 chr4B 77.778 189 17 13 2674 2857 517060059 517059891 4.140000e-15 93.5
18 TraesCS4A01G054300 chr4D 92.142 1998 112 13 814 2788 419206924 419204949 0.000000e+00 2778.0
19 TraesCS4A01G054300 chr4D 90.601 1681 116 25 1009 2673 419232843 419231189 0.000000e+00 2191.0
20 TraesCS4A01G054300 chr4D 89.736 1705 89 31 814 2473 419246021 419247684 0.000000e+00 2100.0
21 TraesCS4A01G054300 chr4D 91.037 993 65 18 2913 3888 419204956 419203971 0.000000e+00 1319.0
22 TraesCS4A01G054300 chr4D 82.288 271 35 11 2851 3111 323597538 323597271 5.060000e-54 222.0
23 TraesCS4A01G054300 chr4D 90.476 168 13 2 260 424 419207082 419206915 6.540000e-53 219.0
24 TraesCS4A01G054300 chr4D 94.643 112 5 1 314 424 419245919 419246030 5.160000e-39 172.0
25 TraesCS4A01G054300 chr4D 93.443 61 1 1 367 424 419233145 419233085 1.920000e-13 87.9
26 TraesCS4A01G054300 chr6A 85.090 389 50 8 430 813 30599545 30599930 1.310000e-104 390.0
27 TraesCS4A01G054300 chr6A 85.714 203 27 2 70 272 614646696 614646496 3.040000e-51 213.0
28 TraesCS4A01G054300 chr2D 84.289 401 50 13 419 813 342554453 342554060 2.840000e-101 379.0
29 TraesCS4A01G054300 chr1A 84.278 388 54 7 430 813 119497087 119497471 4.740000e-99 372.0
30 TraesCS4A01G054300 chr7A 84.103 390 55 7 430 814 314410389 314410002 1.710000e-98 370.0
31 TraesCS4A01G054300 chr7A 82.946 387 58 7 433 813 579075208 579074824 3.720000e-90 342.0
32 TraesCS4A01G054300 chr7A 86.869 198 24 2 70 267 672041314 672041119 1.820000e-53 220.0
33 TraesCS4A01G054300 chr2B 83.250 400 55 12 419 813 407934967 407934575 1.330000e-94 357.0
34 TraesCS4A01G054300 chr2B 83.146 267 23 16 2851 3111 151646086 151645836 1.410000e-54 224.0
35 TraesCS4A01G054300 chr2B 81.919 271 31 16 2851 3111 558009355 558009093 3.040000e-51 213.0
36 TraesCS4A01G054300 chr6B 83.290 389 58 6 430 813 213232761 213233147 6.180000e-93 351.0
37 TraesCS4A01G054300 chr7D 83.378 373 52 10 430 795 578817580 578817949 1.730000e-88 337.0
38 TraesCS4A01G054300 chr7D 88.830 188 19 2 70 257 2870076 2870261 3.020000e-56 230.0
39 TraesCS4A01G054300 chr3D 79.373 383 48 21 2856 3210 454744525 454744146 1.400000e-59 241.0
40 TraesCS4A01G054300 chr3D 88.000 200 22 2 74 272 445278894 445278696 6.490000e-58 235.0
41 TraesCS4A01G054300 chr3D 83.083 266 36 5 2851 3111 517012032 517011771 2.340000e-57 233.0
42 TraesCS4A01G054300 chr1D 89.444 180 18 1 74 253 365984138 365984316 3.910000e-55 226.0
43 TraesCS4A01G054300 chr7B 87.000 200 23 3 70 269 741513835 741513639 5.060000e-54 222.0
44 TraesCS4A01G054300 chr3A 85.854 205 25 4 69 272 531628605 531628404 8.460000e-52 215.0
45 TraesCS4A01G054300 chr3A 86.000 200 26 2 70 269 399898371 399898174 3.040000e-51 213.0
46 TraesCS4A01G054300 chr5A 85.096 208 28 3 70 276 28235109 28234904 3.940000e-50 209.0
47 TraesCS4A01G054300 chr5D 76.923 390 56 16 2845 3209 272350832 272351212 1.430000e-44 191.0
48 TraesCS4A01G054300 chr3B 78.475 223 45 3 3668 3888 797021937 797022158 4.050000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G054300 chr4A 45734253 45738140 3887 False 7180.000000 7180 100.000000 1 3888 1 chr4A.!!$F1 3887
1 TraesCS4A01G054300 chr4A 45465310 45469052 3742 True 2167.500000 4076 91.805000 1011 3627 2 chr4A.!!$R3 2616
2 TraesCS4A01G054300 chr4A 45363375 45367014 3639 True 856.000000 1315 87.687667 994 3627 3 chr4A.!!$R2 2633
3 TraesCS4A01G054300 chr4B 517171408 517172833 1425 False 2021.000000 2021 92.249000 1005 2439 1 chr4B.!!$F1 1434
4 TraesCS4A01G054300 chr4B 517006421 517009078 2657 True 1752.000000 3308 89.475000 260 3280 2 chr4B.!!$R3 3020
5 TraesCS4A01G054300 chr4B 517126474 517129580 3106 True 1316.500000 1875 89.078500 814 2857 2 chr4B.!!$R5 2043
6 TraesCS4A01G054300 chr4B 517080206 517084473 4267 True 1288.500000 2375 89.261000 260 2644 2 chr4B.!!$R4 2384
7 TraesCS4A01G054300 chr4D 419203971 419207082 3111 True 1438.666667 2778 91.218333 260 3888 3 chr4D.!!$R2 3628
8 TraesCS4A01G054300 chr4D 419231189 419233145 1956 True 1139.450000 2191 92.022000 367 2673 2 chr4D.!!$R3 2306
9 TraesCS4A01G054300 chr4D 419245919 419247684 1765 False 1136.000000 2100 92.189500 314 2473 2 chr4D.!!$F1 2159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.108804 GCACGAATCTCCGACCAAGA 60.109 55.000 0.00 0.0 0.00 3.02 F
799 1654 0.250684 TGCATATGCCCATGGTACGG 60.251 55.000 24.54 0.0 41.18 4.02 F
940 3121 0.251033 GCATGCAGGGCTGATGGATA 60.251 55.000 14.21 0.0 0.00 2.59 F
1606 4073 1.210931 CGCCAACAAGATGCACAGG 59.789 57.895 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 4318 1.452145 TTTGTCGGCCTTGAACAGCC 61.452 55.000 0.00 0.00 46.17 4.85 R
2605 6191 0.599991 ACAACATGCTCAGTTCGCGA 60.600 50.000 3.71 3.71 0.00 5.87 R
2808 7694 7.312154 TGTCCAAAATGTCAAGTATTATGCAC 58.688 34.615 0.00 0.00 0.00 4.57 R
3330 9160 1.317613 GTGTGTGAACATGGGCTTCA 58.682 50.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.891566 ACTGCACGAATCTCCGAC 57.108 55.556 0.00 0.00 0.00 4.79
18 19 1.215647 ACTGCACGAATCTCCGACC 59.784 57.895 0.00 0.00 0.00 4.79
19 20 1.215382 CTGCACGAATCTCCGACCA 59.785 57.895 0.00 0.00 0.00 4.02
20 21 0.389817 CTGCACGAATCTCCGACCAA 60.390 55.000 0.00 0.00 0.00 3.67
21 22 0.389817 TGCACGAATCTCCGACCAAG 60.390 55.000 0.00 0.00 0.00 3.61
22 23 0.108804 GCACGAATCTCCGACCAAGA 60.109 55.000 0.00 0.00 0.00 3.02
23 24 1.471676 GCACGAATCTCCGACCAAGAT 60.472 52.381 0.00 0.00 34.96 2.40
24 25 2.464865 CACGAATCTCCGACCAAGATC 58.535 52.381 0.00 0.00 32.29 2.75
25 26 1.065701 ACGAATCTCCGACCAAGATCG 59.934 52.381 0.00 0.00 41.89 3.69
26 27 1.065701 CGAATCTCCGACCAAGATCGT 59.934 52.381 0.00 0.00 40.59 3.73
27 28 2.464865 GAATCTCCGACCAAGATCGTG 58.535 52.381 1.13 1.13 40.59 4.35
28 29 1.475403 ATCTCCGACCAAGATCGTGT 58.525 50.000 7.88 0.00 40.59 4.49
29 30 0.526211 TCTCCGACCAAGATCGTGTG 59.474 55.000 7.88 2.25 40.59 3.82
30 31 0.526211 CTCCGACCAAGATCGTGTGA 59.474 55.000 7.88 0.00 40.59 3.58
31 32 1.135139 CTCCGACCAAGATCGTGTGAT 59.865 52.381 7.88 0.00 40.59 3.06
32 33 1.135112 TCCGACCAAGATCGTGTGATG 60.135 52.381 7.88 0.00 40.59 3.07
33 34 1.404181 CCGACCAAGATCGTGTGATGT 60.404 52.381 7.88 0.00 40.59 3.06
34 35 1.655597 CGACCAAGATCGTGTGATGTG 59.344 52.381 7.88 0.00 37.33 3.21
35 36 2.671070 CGACCAAGATCGTGTGATGTGA 60.671 50.000 7.88 0.00 37.33 3.58
36 37 2.926200 GACCAAGATCGTGTGATGTGAG 59.074 50.000 7.88 0.00 34.09 3.51
37 38 2.300152 ACCAAGATCGTGTGATGTGAGT 59.700 45.455 7.88 0.00 34.09 3.41
38 39 2.926200 CCAAGATCGTGTGATGTGAGTC 59.074 50.000 7.88 0.00 34.09 3.36
39 40 3.367806 CCAAGATCGTGTGATGTGAGTCT 60.368 47.826 7.88 0.00 34.09 3.24
40 41 4.142381 CCAAGATCGTGTGATGTGAGTCTA 60.142 45.833 7.88 0.00 34.09 2.59
41 42 4.624336 AGATCGTGTGATGTGAGTCTAC 57.376 45.455 0.00 0.00 34.09 2.59
42 43 3.378742 AGATCGTGTGATGTGAGTCTACC 59.621 47.826 0.00 0.00 34.09 3.18
43 44 2.791655 TCGTGTGATGTGAGTCTACCT 58.208 47.619 0.00 0.00 0.00 3.08
44 45 2.488153 TCGTGTGATGTGAGTCTACCTG 59.512 50.000 0.00 0.00 0.00 4.00
45 46 2.416027 CGTGTGATGTGAGTCTACCTGG 60.416 54.545 0.00 0.00 0.00 4.45
46 47 2.563179 GTGTGATGTGAGTCTACCTGGT 59.437 50.000 4.05 4.05 0.00 4.00
47 48 3.762288 GTGTGATGTGAGTCTACCTGGTA 59.238 47.826 6.36 6.36 0.00 3.25
48 49 4.017126 TGTGATGTGAGTCTACCTGGTAG 58.983 47.826 24.87 24.87 37.47 3.18
49 50 4.263771 TGTGATGTGAGTCTACCTGGTAGA 60.264 45.833 28.36 28.36 42.04 2.59
50 51 4.705507 GTGATGTGAGTCTACCTGGTAGAA 59.294 45.833 32.33 19.86 45.12 2.10
51 52 5.185249 GTGATGTGAGTCTACCTGGTAGAAA 59.815 44.000 32.33 20.34 45.12 2.52
52 53 5.185249 TGATGTGAGTCTACCTGGTAGAAAC 59.815 44.000 32.33 27.86 45.12 2.78
53 54 3.830755 TGTGAGTCTACCTGGTAGAAACC 59.169 47.826 32.33 23.83 45.12 3.27
54 55 3.195182 GTGAGTCTACCTGGTAGAAACCC 59.805 52.174 32.33 21.66 45.12 4.11
55 56 2.426381 GAGTCTACCTGGTAGAAACCCG 59.574 54.545 32.33 9.11 45.12 5.28
60 61 2.368591 CTGGTAGAAACCCGGACCA 58.631 57.895 0.73 6.65 46.16 4.02
61 62 0.909623 CTGGTAGAAACCCGGACCAT 59.090 55.000 10.60 0.00 46.16 3.55
62 63 1.280998 CTGGTAGAAACCCGGACCATT 59.719 52.381 10.60 0.00 46.16 3.16
63 64 2.502538 CTGGTAGAAACCCGGACCATTA 59.497 50.000 10.60 0.00 46.16 1.90
64 65 2.502538 TGGTAGAAACCCGGACCATTAG 59.497 50.000 0.73 0.00 46.16 1.73
65 66 2.767960 GGTAGAAACCCGGACCATTAGA 59.232 50.000 0.73 0.00 40.21 2.10
66 67 3.198417 GGTAGAAACCCGGACCATTAGAA 59.802 47.826 0.73 0.00 40.21 2.10
67 68 4.323715 GGTAGAAACCCGGACCATTAGAAA 60.324 45.833 0.73 0.00 40.21 2.52
68 69 4.376225 AGAAACCCGGACCATTAGAAAA 57.624 40.909 0.73 0.00 0.00 2.29
69 70 4.732065 AGAAACCCGGACCATTAGAAAAA 58.268 39.130 0.73 0.00 0.00 1.94
70 71 4.521639 AGAAACCCGGACCATTAGAAAAAC 59.478 41.667 0.73 0.00 0.00 2.43
71 72 2.799017 ACCCGGACCATTAGAAAAACC 58.201 47.619 0.73 0.00 0.00 3.27
72 73 2.108601 ACCCGGACCATTAGAAAAACCA 59.891 45.455 0.73 0.00 0.00 3.67
73 74 3.158676 CCCGGACCATTAGAAAAACCAA 58.841 45.455 0.73 0.00 0.00 3.67
74 75 3.574826 CCCGGACCATTAGAAAAACCAAA 59.425 43.478 0.73 0.00 0.00 3.28
75 76 4.321675 CCCGGACCATTAGAAAAACCAAAG 60.322 45.833 0.73 0.00 0.00 2.77
76 77 4.279922 CCGGACCATTAGAAAAACCAAAGT 59.720 41.667 0.00 0.00 0.00 2.66
77 78 5.221362 CCGGACCATTAGAAAAACCAAAGTT 60.221 40.000 0.00 0.00 38.03 2.66
79 80 7.427214 CGGACCATTAGAAAAACCAAAGTTTA 58.573 34.615 0.00 0.00 45.54 2.01
80 81 8.085909 CGGACCATTAGAAAAACCAAAGTTTAT 58.914 33.333 0.00 0.00 45.54 1.40
228 229 9.883142 AAAGTTTACAAAGATTGATTTTGACCA 57.117 25.926 4.87 0.00 38.55 4.02
229 230 9.883142 AAGTTTACAAAGATTGATTTTGACCAA 57.117 25.926 4.87 0.00 38.55 3.67
230 231 9.883142 AGTTTACAAAGATTGATTTTGACCAAA 57.117 25.926 4.87 0.00 38.55 3.28
233 234 9.883142 TTACAAAGATTGATTTTGACCAAAACT 57.117 25.926 9.75 0.88 42.32 2.66
235 236 9.883142 ACAAAGATTGATTTTGACCAAAACTAA 57.117 25.926 9.75 8.60 42.32 2.24
241 242 8.770438 TTGATTTTGACCAAAACTAATATGCC 57.230 30.769 9.75 0.00 42.32 4.40
242 243 7.901029 TGATTTTGACCAAAACTAATATGCCA 58.099 30.769 9.75 0.00 42.32 4.92
243 244 8.034215 TGATTTTGACCAAAACTAATATGCCAG 58.966 33.333 9.75 0.00 42.32 4.85
244 245 7.531857 TTTTGACCAAAACTAATATGCCAGA 57.468 32.000 4.00 0.00 35.57 3.86
245 246 6.509418 TTGACCAAAACTAATATGCCAGAC 57.491 37.500 0.00 0.00 0.00 3.51
246 247 5.815581 TGACCAAAACTAATATGCCAGACT 58.184 37.500 0.00 0.00 0.00 3.24
247 248 6.953101 TGACCAAAACTAATATGCCAGACTA 58.047 36.000 0.00 0.00 0.00 2.59
248 249 7.398829 TGACCAAAACTAATATGCCAGACTAA 58.601 34.615 0.00 0.00 0.00 2.24
249 250 7.885922 TGACCAAAACTAATATGCCAGACTAAA 59.114 33.333 0.00 0.00 0.00 1.85
250 251 8.823220 ACCAAAACTAATATGCCAGACTAAAT 57.177 30.769 0.00 0.00 0.00 1.40
251 252 9.914834 ACCAAAACTAATATGCCAGACTAAATA 57.085 29.630 0.00 0.00 0.00 1.40
282 283 8.757982 AAAGGAAGTACTAGTATAATCGGACA 57.242 34.615 5.75 0.00 0.00 4.02
306 309 5.234116 ACACATATATGTACATGCACACACG 59.766 40.000 17.86 4.07 39.39 4.49
307 310 4.211164 ACATATATGTACATGCACACACGC 59.789 41.667 16.85 0.00 39.68 5.34
334 337 1.794151 CTCGGCCATGCACACAACAA 61.794 55.000 2.24 0.00 0.00 2.83
339 342 1.741732 GCCATGCACACAACAACCAAA 60.742 47.619 0.00 0.00 0.00 3.28
356 359 7.791029 ACAACCAAATCCAACTTTGACTAAAT 58.209 30.769 0.00 0.00 38.17 1.40
362 365 3.991773 TCCAACTTTGACTAAATCCGTCG 59.008 43.478 0.00 0.00 34.17 5.12
374 378 0.539986 ATCCGTCGGTAGGCAACATT 59.460 50.000 11.88 0.00 41.41 2.71
427 431 3.214697 CAAGCCATGCAATTGACGTAA 57.785 42.857 10.34 0.00 0.00 3.18
429 433 3.425577 AGCCATGCAATTGACGTAATG 57.574 42.857 10.34 4.36 0.00 1.90
431 435 2.853594 GCCATGCAATTGACGTAATGTG 59.146 45.455 10.34 1.13 0.00 3.21
433 437 3.500014 CATGCAATTGACGTAATGTGCA 58.500 40.909 10.34 15.94 41.92 4.57
434 438 3.846423 TGCAATTGACGTAATGTGCAT 57.154 38.095 10.34 0.00 37.61 3.96
435 439 3.500014 TGCAATTGACGTAATGTGCATG 58.500 40.909 10.34 0.00 37.61 4.06
437 441 4.165036 GCAATTGACGTAATGTGCATGAA 58.835 39.130 10.34 0.00 35.13 2.57
439 443 5.276020 GCAATTGACGTAATGTGCATGAATG 60.276 40.000 10.34 0.00 35.13 2.67
440 444 5.816449 ATTGACGTAATGTGCATGAATGA 57.184 34.783 0.00 0.00 0.00 2.57
441 445 5.619625 TTGACGTAATGTGCATGAATGAA 57.380 34.783 0.00 0.00 0.00 2.57
442 446 5.816449 TGACGTAATGTGCATGAATGAAT 57.184 34.783 0.00 0.00 0.00 2.57
443 447 5.809464 TGACGTAATGTGCATGAATGAATC 58.191 37.500 0.00 0.00 0.00 2.52
444 448 5.173774 ACGTAATGTGCATGAATGAATCC 57.826 39.130 0.00 0.00 0.00 3.01
445 449 4.213674 CGTAATGTGCATGAATGAATCCG 58.786 43.478 0.00 0.00 0.00 4.18
446 450 4.024977 CGTAATGTGCATGAATGAATCCGA 60.025 41.667 0.00 0.00 0.00 4.55
447 451 4.563337 AATGTGCATGAATGAATCCGAG 57.437 40.909 0.00 0.00 0.00 4.63
448 452 2.989909 TGTGCATGAATGAATCCGAGT 58.010 42.857 0.00 0.00 0.00 4.18
449 453 4.135747 TGTGCATGAATGAATCCGAGTA 57.864 40.909 0.00 0.00 0.00 2.59
450 454 4.707105 TGTGCATGAATGAATCCGAGTAT 58.293 39.130 0.00 0.00 0.00 2.12
451 455 5.852827 TGTGCATGAATGAATCCGAGTATA 58.147 37.500 0.00 0.00 0.00 1.47
452 456 6.466812 TGTGCATGAATGAATCCGAGTATAT 58.533 36.000 0.00 0.00 0.00 0.86
453 457 7.610865 TGTGCATGAATGAATCCGAGTATATA 58.389 34.615 0.00 0.00 0.00 0.86
454 458 8.260114 TGTGCATGAATGAATCCGAGTATATAT 58.740 33.333 0.00 0.00 0.00 0.86
455 459 8.546244 GTGCATGAATGAATCCGAGTATATATG 58.454 37.037 0.00 0.00 0.00 1.78
456 460 7.712205 TGCATGAATGAATCCGAGTATATATGG 59.288 37.037 0.00 0.00 0.00 2.74
457 461 7.928167 GCATGAATGAATCCGAGTATATATGGA 59.072 37.037 0.00 4.41 34.45 3.41
458 462 9.822185 CATGAATGAATCCGAGTATATATGGAA 57.178 33.333 0.00 0.00 33.48 3.53
459 463 9.823647 ATGAATGAATCCGAGTATATATGGAAC 57.176 33.333 0.00 4.78 33.48 3.62
460 464 8.258007 TGAATGAATCCGAGTATATATGGAACC 58.742 37.037 0.00 0.00 33.48 3.62
461 465 7.733773 ATGAATCCGAGTATATATGGAACCA 57.266 36.000 0.00 0.00 33.48 3.67
462 466 7.733773 TGAATCCGAGTATATATGGAACCAT 57.266 36.000 11.20 11.20 40.19 3.55
463 467 8.146053 TGAATCCGAGTATATATGGAACCATT 57.854 34.615 11.68 3.32 37.82 3.16
464 468 8.602424 TGAATCCGAGTATATATGGAACCATTT 58.398 33.333 11.68 6.82 37.82 2.32
465 469 9.449719 GAATCCGAGTATATATGGAACCATTTT 57.550 33.333 11.68 3.42 37.82 1.82
466 470 8.792830 ATCCGAGTATATATGGAACCATTTTG 57.207 34.615 11.68 0.00 37.82 2.44
467 471 7.969004 TCCGAGTATATATGGAACCATTTTGA 58.031 34.615 11.68 0.00 37.82 2.69
468 472 8.433599 TCCGAGTATATATGGAACCATTTTGAA 58.566 33.333 11.68 0.00 37.82 2.69
469 473 9.062524 CCGAGTATATATGGAACCATTTTGAAA 57.937 33.333 11.68 0.00 37.82 2.69
477 481 7.878547 ATGGAACCATTTTGAAAAACACATT 57.121 28.000 0.00 0.00 31.82 2.71
478 482 7.693969 TGGAACCATTTTGAAAAACACATTT 57.306 28.000 0.00 0.00 0.00 2.32
479 483 7.756558 TGGAACCATTTTGAAAAACACATTTC 58.243 30.769 0.00 0.00 39.28 2.17
480 484 7.609532 TGGAACCATTTTGAAAAACACATTTCT 59.390 29.630 0.00 0.00 39.51 2.52
481 485 9.103861 GGAACCATTTTGAAAAACACATTTCTA 57.896 29.630 0.00 0.00 39.51 2.10
538 542 4.829808 CATGTCTTCATGTTCTATGTGCG 58.170 43.478 0.00 0.00 44.37 5.34
539 543 3.925379 TGTCTTCATGTTCTATGTGCGT 58.075 40.909 0.00 0.00 0.00 5.24
540 544 3.679502 TGTCTTCATGTTCTATGTGCGTG 59.320 43.478 0.00 0.00 0.00 5.34
541 545 2.672874 TCTTCATGTTCTATGTGCGTGC 59.327 45.455 0.00 0.00 0.00 5.34
542 546 2.091852 TCATGTTCTATGTGCGTGCA 57.908 45.000 0.00 0.00 0.00 4.57
543 547 2.631267 TCATGTTCTATGTGCGTGCAT 58.369 42.857 0.00 0.12 0.00 3.96
544 548 3.791245 TCATGTTCTATGTGCGTGCATA 58.209 40.909 0.00 0.00 0.00 3.14
545 549 4.187694 TCATGTTCTATGTGCGTGCATAA 58.812 39.130 0.00 0.00 31.76 1.90
546 550 4.633565 TCATGTTCTATGTGCGTGCATAAA 59.366 37.500 0.00 0.00 31.76 1.40
547 551 4.598406 TGTTCTATGTGCGTGCATAAAG 57.402 40.909 0.00 0.00 31.76 1.85
548 552 4.000325 TGTTCTATGTGCGTGCATAAAGT 59.000 39.130 0.00 0.00 31.76 2.66
549 553 4.454161 TGTTCTATGTGCGTGCATAAAGTT 59.546 37.500 0.00 0.00 31.76 2.66
550 554 5.049060 TGTTCTATGTGCGTGCATAAAGTTT 60.049 36.000 0.00 0.00 31.76 2.66
551 555 5.621197 TCTATGTGCGTGCATAAAGTTTT 57.379 34.783 0.00 0.00 31.76 2.43
552 556 6.729391 TCTATGTGCGTGCATAAAGTTTTA 57.271 33.333 0.00 0.00 31.76 1.52
553 557 7.315247 TCTATGTGCGTGCATAAAGTTTTAT 57.685 32.000 0.00 0.00 33.82 1.40
555 559 4.480541 TGTGCGTGCATAAAGTTTTATGG 58.519 39.130 20.34 9.51 46.27 2.74
556 560 4.216472 TGTGCGTGCATAAAGTTTTATGGA 59.784 37.500 20.34 16.80 46.27 3.41
579 583 9.434420 TGGAAAATAATTTCTTTGTGGCTTATG 57.566 29.630 3.38 0.00 43.65 1.90
580 584 9.435688 GGAAAATAATTTCTTTGTGGCTTATGT 57.564 29.630 3.38 0.00 43.65 2.29
585 589 7.775053 AATTTCTTTGTGGCTTATGTAAGGA 57.225 32.000 2.29 0.00 33.95 3.36
586 590 7.775053 ATTTCTTTGTGGCTTATGTAAGGAA 57.225 32.000 2.29 0.00 33.95 3.36
587 591 6.817765 TTCTTTGTGGCTTATGTAAGGAAG 57.182 37.500 2.29 0.00 33.95 3.46
588 592 6.121776 TCTTTGTGGCTTATGTAAGGAAGA 57.878 37.500 2.29 0.00 33.95 2.87
589 593 6.721318 TCTTTGTGGCTTATGTAAGGAAGAT 58.279 36.000 2.29 0.00 33.95 2.40
590 594 7.857456 TCTTTGTGGCTTATGTAAGGAAGATA 58.143 34.615 2.29 0.00 33.95 1.98
591 595 7.769044 TCTTTGTGGCTTATGTAAGGAAGATAC 59.231 37.037 2.29 0.00 33.95 2.24
592 596 6.553953 TGTGGCTTATGTAAGGAAGATACA 57.446 37.500 2.29 0.00 37.64 2.29
593 597 6.953101 TGTGGCTTATGTAAGGAAGATACAA 58.047 36.000 2.29 0.00 36.88 2.41
594 598 7.398829 TGTGGCTTATGTAAGGAAGATACAAA 58.601 34.615 2.29 0.00 36.88 2.83
595 599 7.885922 TGTGGCTTATGTAAGGAAGATACAAAA 59.114 33.333 2.29 0.00 36.88 2.44
596 600 8.903820 GTGGCTTATGTAAGGAAGATACAAAAT 58.096 33.333 2.29 0.00 36.88 1.82
622 626 7.977789 TGTCATGAAACACTATTTAGAAGCA 57.022 32.000 0.00 0.00 0.00 3.91
623 627 7.806690 TGTCATGAAACACTATTTAGAAGCAC 58.193 34.615 0.00 0.00 0.00 4.40
624 628 7.661437 TGTCATGAAACACTATTTAGAAGCACT 59.339 33.333 0.00 0.00 0.00 4.40
625 629 7.959651 GTCATGAAACACTATTTAGAAGCACTG 59.040 37.037 0.00 0.00 0.00 3.66
626 630 7.877612 TCATGAAACACTATTTAGAAGCACTGA 59.122 33.333 0.00 0.00 0.00 3.41
627 631 8.506437 CATGAAACACTATTTAGAAGCACTGAA 58.494 33.333 0.00 0.00 0.00 3.02
628 632 8.621532 TGAAACACTATTTAGAAGCACTGAAT 57.378 30.769 6.30 6.30 38.20 2.57
629 633 9.066892 TGAAACACTATTTAGAAGCACTGAATT 57.933 29.630 6.34 0.00 36.47 2.17
630 634 9.899226 GAAACACTATTTAGAAGCACTGAATTT 57.101 29.630 6.34 0.00 36.47 1.82
692 696 9.509855 TTTCATAAAACTTTGTGATGTGTACAC 57.490 29.630 19.36 19.36 37.96 2.90
693 697 8.214721 TCATAAAACTTTGTGATGTGTACACA 57.785 30.769 29.70 29.70 46.44 3.72
694 698 8.126074 TCATAAAACTTTGTGATGTGTACACAC 58.874 33.333 30.11 22.25 45.82 3.82
708 712 5.981174 GTGTACACACATTTACGAACATGT 58.019 37.500 21.14 0.00 45.75 3.21
709 713 7.107834 GTGTACACACATTTACGAACATGTA 57.892 36.000 21.14 0.00 45.75 2.29
710 714 7.735500 GTGTACACACATTTACGAACATGTAT 58.264 34.615 21.14 0.00 45.75 2.29
711 715 7.686529 GTGTACACACATTTACGAACATGTATG 59.313 37.037 21.14 0.04 45.75 2.39
712 716 6.795098 ACACACATTTACGAACATGTATGT 57.205 33.333 0.00 0.77 44.20 2.29
713 717 7.892778 ACACACATTTACGAACATGTATGTA 57.107 32.000 8.88 7.49 38.87 2.29
714 718 8.487313 ACACACATTTACGAACATGTATGTAT 57.513 30.769 8.88 0.00 38.87 2.29
715 719 8.387354 ACACACATTTACGAACATGTATGTATG 58.613 33.333 11.91 11.91 38.87 2.39
716 720 7.373180 CACACATTTACGAACATGTATGTATGC 59.627 37.037 8.88 0.00 40.80 3.14
717 721 7.279981 ACACATTTACGAACATGTATGTATGCT 59.720 33.333 8.88 0.00 40.80 3.79
718 722 8.760569 CACATTTACGAACATGTATGTATGCTA 58.239 33.333 8.88 0.00 40.80 3.49
719 723 9.489084 ACATTTACGAACATGTATGTATGCTAT 57.511 29.630 7.70 0.84 40.80 2.97
724 728 8.662781 ACGAACATGTATGTATGCTATTTTCT 57.337 30.769 0.00 0.00 40.80 2.52
725 729 9.109393 ACGAACATGTATGTATGCTATTTTCTT 57.891 29.630 0.00 0.00 40.80 2.52
761 765 8.109843 TGACACTTTAAAACGTGCTTAAAATG 57.890 30.769 16.70 16.70 33.73 2.32
762 766 7.221067 TGACACTTTAAAACGTGCTTAAAATGG 59.779 33.333 19.92 13.13 32.48 3.16
763 767 7.259161 ACACTTTAAAACGTGCTTAAAATGGA 58.741 30.769 19.92 2.57 32.48 3.41
765 769 8.760569 CACTTTAAAACGTGCTTAAAATGGATT 58.239 29.630 13.00 0.00 30.07 3.01
770 774 6.446659 AACGTGCTTAAAATGGATTTTTCG 57.553 33.333 2.79 4.48 40.24 3.46
771 775 5.764131 ACGTGCTTAAAATGGATTTTTCGA 58.236 33.333 2.79 0.00 40.24 3.71
772 776 6.210078 ACGTGCTTAAAATGGATTTTTCGAA 58.790 32.000 0.00 0.00 40.24 3.71
773 777 6.697892 ACGTGCTTAAAATGGATTTTTCGAAA 59.302 30.769 6.47 6.47 40.24 3.46
774 778 7.222999 ACGTGCTTAAAATGGATTTTTCGAAAA 59.777 29.630 19.08 19.08 40.24 2.29
775 779 7.735586 CGTGCTTAAAATGGATTTTTCGAAAAG 59.264 33.333 21.53 8.19 40.24 2.27
777 781 8.547069 TGCTTAAAATGGATTTTTCGAAAAGTG 58.453 29.630 21.52 6.65 40.24 3.16
778 782 8.009409 GCTTAAAATGGATTTTTCGAAAAGTGG 58.991 33.333 21.52 6.10 40.24 4.00
780 784 5.545063 AATGGATTTTTCGAAAAGTGGGT 57.455 34.783 21.52 8.35 0.00 4.51
781 785 4.314740 TGGATTTTTCGAAAAGTGGGTG 57.685 40.909 21.52 0.00 0.00 4.61
784 1639 3.810310 TTTTTCGAAAAGTGGGTGCAT 57.190 38.095 21.53 0.00 0.00 3.96
790 1645 1.136891 GAAAAGTGGGTGCATATGCCC 59.863 52.381 24.54 22.41 45.04 5.36
797 1652 1.247567 GGTGCATATGCCCATGGTAC 58.752 55.000 24.54 13.57 41.18 3.34
799 1654 0.250684 TGCATATGCCCATGGTACGG 60.251 55.000 24.54 0.00 41.18 4.02
819 2973 1.452833 GGGTGCCCTCTCTGCAATC 60.453 63.158 0.00 0.00 41.06 2.67
870 3030 3.833545 ACGGATAGCATAGCTAACTCG 57.166 47.619 0.00 9.39 44.62 4.18
882 3054 2.159170 AGCTAACTCGATCCAGAGCAAC 60.159 50.000 4.30 0.00 41.77 4.17
940 3121 0.251033 GCATGCAGGGCTGATGGATA 60.251 55.000 14.21 0.00 0.00 2.59
941 3122 1.616187 GCATGCAGGGCTGATGGATAT 60.616 52.381 14.21 0.00 0.00 1.63
973 3210 2.036006 TGCGCGGTCAATACCCAAC 61.036 57.895 8.83 0.00 43.54 3.77
1221 3510 2.669849 CTGCTGCAAGAGGAGGCT 59.330 61.111 3.02 0.00 36.50 4.58
1606 4073 1.210931 CGCCAACAAGATGCACAGG 59.789 57.895 0.00 0.00 0.00 4.00
1845 4315 4.193334 CGAGATGCTGACCGGCGA 62.193 66.667 9.30 0.00 34.52 5.54
1848 4318 2.279120 GATGCTGACCGGCGAGAG 60.279 66.667 9.30 1.44 34.52 3.20
2599 6185 6.656693 GCTATATGTAATTGCTTGGAGGTGAT 59.343 38.462 0.00 0.00 0.00 3.06
2602 6188 8.798859 ATATGTAATTGCTTGGAGGTGATATC 57.201 34.615 0.00 0.00 0.00 1.63
2603 6189 5.376625 TGTAATTGCTTGGAGGTGATATCC 58.623 41.667 0.00 0.00 37.35 2.59
2605 6191 2.196742 TGCTTGGAGGTGATATCCCT 57.803 50.000 11.33 11.33 35.86 4.20
2808 7694 3.922171 ACTCCTATTTGCCCTCTTCAG 57.078 47.619 0.00 0.00 0.00 3.02
2819 7710 3.455910 TGCCCTCTTCAGTGCATAATACT 59.544 43.478 0.00 0.00 0.00 2.12
2847 7738 7.596494 ACATTTTGGACAGTGATACATTTCTG 58.404 34.615 0.00 0.00 0.00 3.02
3199 8172 6.540438 TGTCTATACACCTAGGAACCAAAG 57.460 41.667 17.98 5.67 0.00 2.77
3201 8174 4.966805 TCTATACACCTAGGAACCAAAGGG 59.033 45.833 17.98 0.00 41.29 3.95
3226 9053 3.728076 TTCCGAGGTACATGCATACTC 57.272 47.619 0.00 4.42 0.00 2.59
3280 9110 5.978593 AAAAAGTGTAACAACGAACAACG 57.021 34.783 0.00 0.00 44.27 4.10
3306 9136 5.244626 TCCCACTAGAAGTGTACTTTACCAC 59.755 44.000 0.00 0.00 44.50 4.16
3315 9145 2.964464 TGTACTTTACCACGGTCAAGGA 59.036 45.455 13.35 3.35 34.63 3.36
3330 9160 6.106673 CGGTCAAGGACAAATATAGAGTGTT 58.893 40.000 0.00 0.00 33.68 3.32
3353 9183 2.318908 AGCCCATGTTCACACACAAAT 58.681 42.857 0.00 0.00 35.03 2.32
3494 9340 7.393234 AGTGCTCTATTTAGGCAAATGTTTACA 59.607 33.333 0.00 0.00 37.73 2.41
3536 9382 3.328505 CATTGGGTGAAAATTGACTGGC 58.671 45.455 0.00 0.00 0.00 4.85
3599 9446 2.896685 TGGCCAATTTAGTTTGACCCAG 59.103 45.455 0.61 0.00 28.79 4.45
3643 9490 9.638300 CGATAAGTGCTTAATACTGACAAATTC 57.362 33.333 0.00 0.00 0.00 2.17
3645 9492 7.435068 AAGTGCTTAATACTGACAAATTCGT 57.565 32.000 0.00 0.00 0.00 3.85
3648 9495 5.180304 TGCTTAATACTGACAAATTCGTGCA 59.820 36.000 0.00 0.00 0.00 4.57
3662 9509 1.361668 CGTGCAAGCGTTGAGGCTAT 61.362 55.000 0.00 0.00 43.93 2.97
3663 9510 1.651987 GTGCAAGCGTTGAGGCTATA 58.348 50.000 0.00 0.00 43.93 1.31
3696 9544 3.383185 ACGAATGGAAAGAGCCAACAAAA 59.617 39.130 0.00 0.00 42.16 2.44
3713 9561 0.691904 AAATTGTGGGTTGGCATGGG 59.308 50.000 0.00 0.00 0.00 4.00
3718 9566 0.831711 GTGGGTTGGCATGGGAAACT 60.832 55.000 0.00 0.00 0.00 2.66
3727 9575 1.131126 GCATGGGAAACTCATGTGACG 59.869 52.381 12.23 0.00 42.72 4.35
3765 9613 2.936919 TCTATGCATCCACCACCATC 57.063 50.000 0.19 0.00 0.00 3.51
3766 9614 2.126057 TCTATGCATCCACCACCATCA 58.874 47.619 0.19 0.00 0.00 3.07
3767 9615 2.712627 TCTATGCATCCACCACCATCAT 59.287 45.455 0.19 0.00 0.00 2.45
3768 9616 2.464796 ATGCATCCACCACCATCATT 57.535 45.000 0.00 0.00 0.00 2.57
3769 9617 1.476477 TGCATCCACCACCATCATTG 58.524 50.000 0.00 0.00 0.00 2.82
3777 9627 3.818586 CACCATCATTGTGGGCAAC 57.181 52.632 9.22 0.00 43.77 4.17
3782 9632 0.327924 ATCATTGTGGGCAACGGAGA 59.672 50.000 0.00 0.00 37.44 3.71
3789 9639 0.693622 TGGGCAACGGAGATAAACCA 59.306 50.000 0.00 0.00 37.60 3.67
3797 9647 5.484715 CAACGGAGATAAACCACCTTTCTA 58.515 41.667 0.00 0.00 0.00 2.10
3818 9668 4.168291 CTCCCCTTGGCTCCTCGC 62.168 72.222 0.00 0.00 38.13 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.215647 GGTCGGAGATTCGTGCAGT 59.784 57.895 0.00 0.00 40.67 4.40
2 3 0.389817 CTTGGTCGGAGATTCGTGCA 60.390 55.000 0.00 0.00 40.67 4.57
3 4 0.108804 TCTTGGTCGGAGATTCGTGC 60.109 55.000 0.00 0.00 40.67 5.34
4 5 2.464865 GATCTTGGTCGGAGATTCGTG 58.535 52.381 0.00 0.00 40.67 4.35
6 7 1.065701 ACGATCTTGGTCGGAGATTCG 59.934 52.381 8.19 0.00 45.49 3.34
7 8 2.159226 ACACGATCTTGGTCGGAGATTC 60.159 50.000 8.19 0.00 45.49 2.52
8 9 1.825474 ACACGATCTTGGTCGGAGATT 59.175 47.619 8.19 0.00 45.49 2.40
11 12 0.526211 TCACACGATCTTGGTCGGAG 59.474 55.000 8.19 2.83 45.49 4.63
12 13 1.135112 CATCACACGATCTTGGTCGGA 60.135 52.381 8.19 0.00 45.49 4.55
13 14 1.280982 CATCACACGATCTTGGTCGG 58.719 55.000 8.19 0.05 45.49 4.79
14 15 1.655597 CACATCACACGATCTTGGTCG 59.344 52.381 4.03 1.40 46.56 4.79
15 16 2.926200 CTCACATCACACGATCTTGGTC 59.074 50.000 4.03 0.00 0.00 4.02
16 17 2.300152 ACTCACATCACACGATCTTGGT 59.700 45.455 4.03 0.00 0.00 3.67
17 18 2.926200 GACTCACATCACACGATCTTGG 59.074 50.000 4.03 0.00 0.00 3.61
18 19 3.842820 AGACTCACATCACACGATCTTG 58.157 45.455 0.00 0.00 0.00 3.02
19 20 4.142359 GGTAGACTCACATCACACGATCTT 60.142 45.833 0.00 0.00 0.00 2.40
20 21 3.378742 GGTAGACTCACATCACACGATCT 59.621 47.826 0.00 0.00 0.00 2.75
21 22 3.378742 AGGTAGACTCACATCACACGATC 59.621 47.826 0.00 0.00 0.00 3.69
22 23 3.129462 CAGGTAGACTCACATCACACGAT 59.871 47.826 0.00 0.00 0.00 3.73
23 24 2.488153 CAGGTAGACTCACATCACACGA 59.512 50.000 0.00 0.00 0.00 4.35
24 25 2.416027 CCAGGTAGACTCACATCACACG 60.416 54.545 0.00 0.00 0.00 4.49
25 26 2.563179 ACCAGGTAGACTCACATCACAC 59.437 50.000 0.00 0.00 0.00 3.82
26 27 2.889512 ACCAGGTAGACTCACATCACA 58.110 47.619 0.00 0.00 0.00 3.58
27 28 4.270834 TCTACCAGGTAGACTCACATCAC 58.729 47.826 23.68 0.00 39.81 3.06
28 29 4.586306 TCTACCAGGTAGACTCACATCA 57.414 45.455 23.68 0.15 39.81 3.07
29 30 5.394333 GGTTTCTACCAGGTAGACTCACATC 60.394 48.000 26.71 11.98 43.65 3.06
30 31 4.466726 GGTTTCTACCAGGTAGACTCACAT 59.533 45.833 26.71 0.00 43.65 3.21
31 32 3.830755 GGTTTCTACCAGGTAGACTCACA 59.169 47.826 26.71 10.96 43.65 3.58
32 33 3.195182 GGGTTTCTACCAGGTAGACTCAC 59.805 52.174 26.71 21.44 46.96 3.51
33 34 3.438183 GGGTTTCTACCAGGTAGACTCA 58.562 50.000 26.71 11.68 46.96 3.41
34 35 2.426381 CGGGTTTCTACCAGGTAGACTC 59.574 54.545 26.71 20.71 46.96 3.36
35 36 2.454538 CGGGTTTCTACCAGGTAGACT 58.545 52.381 26.71 0.00 46.96 3.24
36 37 2.955477 CGGGTTTCTACCAGGTAGAC 57.045 55.000 26.71 17.36 46.96 2.59
42 43 0.909623 ATGGTCCGGGTTTCTACCAG 59.090 55.000 14.95 0.00 46.96 4.00
43 44 1.364269 AATGGTCCGGGTTTCTACCA 58.636 50.000 12.40 12.40 46.96 3.25
44 45 2.767960 TCTAATGGTCCGGGTTTCTACC 59.232 50.000 0.00 0.09 44.22 3.18
45 46 4.476628 TTCTAATGGTCCGGGTTTCTAC 57.523 45.455 0.00 0.00 0.00 2.59
46 47 5.502089 TTTTCTAATGGTCCGGGTTTCTA 57.498 39.130 0.00 0.00 0.00 2.10
47 48 4.376225 TTTTCTAATGGTCCGGGTTTCT 57.624 40.909 0.00 0.00 0.00 2.52
48 49 4.321452 GGTTTTTCTAATGGTCCGGGTTTC 60.321 45.833 0.00 0.00 0.00 2.78
49 50 3.575256 GGTTTTTCTAATGGTCCGGGTTT 59.425 43.478 0.00 0.00 0.00 3.27
50 51 3.159472 GGTTTTTCTAATGGTCCGGGTT 58.841 45.455 0.00 0.00 0.00 4.11
51 52 2.108601 TGGTTTTTCTAATGGTCCGGGT 59.891 45.455 0.00 0.00 0.00 5.28
52 53 2.797786 TGGTTTTTCTAATGGTCCGGG 58.202 47.619 0.00 0.00 0.00 5.73
53 54 4.279922 ACTTTGGTTTTTCTAATGGTCCGG 59.720 41.667 0.00 0.00 0.00 5.14
54 55 5.447624 ACTTTGGTTTTTCTAATGGTCCG 57.552 39.130 0.00 0.00 0.00 4.79
202 203 9.883142 TGGTCAAAATCAATCTTTGTAAACTTT 57.117 25.926 0.00 0.00 35.65 2.66
203 204 9.883142 TTGGTCAAAATCAATCTTTGTAAACTT 57.117 25.926 0.00 0.00 35.65 2.66
204 205 9.883142 TTTGGTCAAAATCAATCTTTGTAAACT 57.117 25.926 0.00 0.00 35.65 2.66
207 208 9.883142 AGTTTTGGTCAAAATCAATCTTTGTAA 57.117 25.926 11.37 0.00 41.64 2.41
209 210 9.883142 TTAGTTTTGGTCAAAATCAATCTTTGT 57.117 25.926 11.37 0.00 41.64 2.83
215 216 9.382275 GGCATATTAGTTTTGGTCAAAATCAAT 57.618 29.630 11.37 14.01 41.64 2.57
216 217 8.370940 TGGCATATTAGTTTTGGTCAAAATCAA 58.629 29.630 11.37 9.09 41.64 2.57
217 218 7.901029 TGGCATATTAGTTTTGGTCAAAATCA 58.099 30.769 11.37 1.58 41.64 2.57
218 219 8.250332 TCTGGCATATTAGTTTTGGTCAAAATC 58.750 33.333 11.37 6.45 41.64 2.17
219 220 8.034804 GTCTGGCATATTAGTTTTGGTCAAAAT 58.965 33.333 11.37 4.86 41.64 1.82
220 221 7.232534 AGTCTGGCATATTAGTTTTGGTCAAAA 59.767 33.333 4.92 4.92 37.90 2.44
221 222 6.719370 AGTCTGGCATATTAGTTTTGGTCAAA 59.281 34.615 0.00 0.00 0.00 2.69
222 223 6.245408 AGTCTGGCATATTAGTTTTGGTCAA 58.755 36.000 0.00 0.00 0.00 3.18
223 224 5.815581 AGTCTGGCATATTAGTTTTGGTCA 58.184 37.500 0.00 0.00 0.00 4.02
224 225 7.859325 TTAGTCTGGCATATTAGTTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
225 226 8.823220 ATTTAGTCTGGCATATTAGTTTTGGT 57.177 30.769 0.00 0.00 0.00 3.67
237 238 9.474313 TTCCTTTATTGTTATTTAGTCTGGCAT 57.526 29.630 0.00 0.00 0.00 4.40
238 239 8.871629 TTCCTTTATTGTTATTTAGTCTGGCA 57.128 30.769 0.00 0.00 0.00 4.92
239 240 8.957466 ACTTCCTTTATTGTTATTTAGTCTGGC 58.043 33.333 0.00 0.00 0.00 4.85
256 257 9.851686 TGTCCGATTATACTAGTACTTCCTTTA 57.148 33.333 4.31 0.00 0.00 1.85
257 258 8.628280 GTGTCCGATTATACTAGTACTTCCTTT 58.372 37.037 4.31 0.00 0.00 3.11
258 259 7.776969 TGTGTCCGATTATACTAGTACTTCCTT 59.223 37.037 4.31 0.00 0.00 3.36
262 263 7.870509 TGTGTGTCCGATTATACTAGTACTT 57.129 36.000 4.31 0.00 0.00 2.24
275 276 5.869344 GCATGTACATATATGTGTGTCCGAT 59.131 40.000 25.48 6.46 41.89 4.18
280 281 6.037062 GTGTGTGCATGTACATATATGTGTGT 59.963 38.462 25.48 10.02 41.89 3.72
282 283 5.234116 CGTGTGTGCATGTACATATATGTGT 59.766 40.000 25.48 10.18 41.89 3.72
334 337 6.294508 CGGATTTAGTCAAAGTTGGATTTGGT 60.295 38.462 0.00 0.00 39.99 3.67
339 342 4.630069 CGACGGATTTAGTCAAAGTTGGAT 59.370 41.667 0.00 0.00 38.46 3.41
356 359 0.108520 GAATGTTGCCTACCGACGGA 60.109 55.000 23.38 3.17 0.00 4.69
362 365 4.278419 ACAAGTCAAAGAATGTTGCCTACC 59.722 41.667 0.00 0.00 0.00 3.18
423 427 4.024977 TCGGATTCATTCATGCACATTACG 60.025 41.667 0.00 0.00 0.00 3.18
427 431 3.548770 ACTCGGATTCATTCATGCACAT 58.451 40.909 0.00 0.00 0.00 3.21
429 433 6.974932 ATATACTCGGATTCATTCATGCAC 57.025 37.500 0.00 0.00 0.00 4.57
431 435 7.928167 TCCATATATACTCGGATTCATTCATGC 59.072 37.037 0.00 0.00 0.00 4.06
433 437 9.823647 GTTCCATATATACTCGGATTCATTCAT 57.176 33.333 0.00 0.00 0.00 2.57
434 438 8.258007 GGTTCCATATATACTCGGATTCATTCA 58.742 37.037 0.00 0.00 0.00 2.57
435 439 8.258007 TGGTTCCATATATACTCGGATTCATTC 58.742 37.037 0.00 0.00 0.00 2.67
437 441 7.733773 TGGTTCCATATATACTCGGATTCAT 57.266 36.000 0.00 0.00 0.00 2.57
439 443 9.449719 AAAATGGTTCCATATATACTCGGATTC 57.550 33.333 4.67 0.00 0.00 2.52
440 444 9.231297 CAAAATGGTTCCATATATACTCGGATT 57.769 33.333 4.67 0.00 0.00 3.01
441 445 8.602424 TCAAAATGGTTCCATATATACTCGGAT 58.398 33.333 4.67 0.00 0.00 4.18
442 446 7.969004 TCAAAATGGTTCCATATATACTCGGA 58.031 34.615 4.67 0.00 0.00 4.55
443 447 8.615878 TTCAAAATGGTTCCATATATACTCGG 57.384 34.615 4.67 0.00 0.00 4.63
451 455 9.571816 AATGTGTTTTTCAAAATGGTTCCATAT 57.428 25.926 4.67 0.00 0.00 1.78
452 456 8.970859 AATGTGTTTTTCAAAATGGTTCCATA 57.029 26.923 4.67 0.00 0.00 2.74
453 457 7.878547 AATGTGTTTTTCAAAATGGTTCCAT 57.121 28.000 0.00 0.00 0.00 3.41
454 458 7.609532 AGAAATGTGTTTTTCAAAATGGTTCCA 59.390 29.630 0.00 0.00 37.93 3.53
455 459 7.984391 AGAAATGTGTTTTTCAAAATGGTTCC 58.016 30.769 0.00 0.00 37.93 3.62
509 513 3.959478 CATGAAGACATGCCCATGC 57.041 52.632 8.11 2.14 45.51 4.06
517 521 4.330894 CACGCACATAGAACATGAAGACAT 59.669 41.667 0.00 0.00 37.19 3.06
518 522 3.679502 CACGCACATAGAACATGAAGACA 59.320 43.478 0.00 0.00 0.00 3.41
519 523 3.484229 GCACGCACATAGAACATGAAGAC 60.484 47.826 0.00 0.00 0.00 3.01
520 524 2.672874 GCACGCACATAGAACATGAAGA 59.327 45.455 0.00 0.00 0.00 2.87
521 525 2.416202 TGCACGCACATAGAACATGAAG 59.584 45.455 0.00 0.00 0.00 3.02
522 526 2.421619 TGCACGCACATAGAACATGAA 58.578 42.857 0.00 0.00 0.00 2.57
523 527 2.091852 TGCACGCACATAGAACATGA 57.908 45.000 0.00 0.00 0.00 3.07
524 528 4.534794 TTATGCACGCACATAGAACATG 57.465 40.909 0.00 0.00 34.15 3.21
525 529 4.635765 ACTTTATGCACGCACATAGAACAT 59.364 37.500 0.00 0.00 34.15 2.71
526 530 4.000325 ACTTTATGCACGCACATAGAACA 59.000 39.130 0.00 0.00 34.15 3.18
527 531 4.600012 ACTTTATGCACGCACATAGAAC 57.400 40.909 0.00 0.00 34.15 3.01
528 532 5.621197 AAACTTTATGCACGCACATAGAA 57.379 34.783 0.00 0.00 34.15 2.10
529 533 5.621197 AAAACTTTATGCACGCACATAGA 57.379 34.783 0.00 0.00 34.15 1.98
530 534 6.414694 CCATAAAACTTTATGCACGCACATAG 59.585 38.462 14.23 0.00 45.36 2.23
531 535 6.094186 TCCATAAAACTTTATGCACGCACATA 59.906 34.615 14.23 0.00 45.36 2.29
532 536 5.101628 CCATAAAACTTTATGCACGCACAT 58.898 37.500 14.23 0.00 45.36 3.21
533 537 4.216472 TCCATAAAACTTTATGCACGCACA 59.784 37.500 14.23 0.00 45.36 4.57
534 538 4.728534 TCCATAAAACTTTATGCACGCAC 58.271 39.130 14.23 0.00 45.36 5.34
535 539 5.378292 TTCCATAAAACTTTATGCACGCA 57.622 34.783 14.23 0.00 45.36 5.24
536 540 6.698359 TTTTCCATAAAACTTTATGCACGC 57.302 33.333 14.23 0.00 45.36 5.34
553 557 9.434420 CATAAGCCACAAAGAAATTATTTTCCA 57.566 29.630 6.50 0.00 41.86 3.53
554 558 9.435688 ACATAAGCCACAAAGAAATTATTTTCC 57.564 29.630 6.50 0.00 41.86 3.13
559 563 9.474313 TCCTTACATAAGCCACAAAGAAATTAT 57.526 29.630 0.00 0.00 32.02 1.28
560 564 8.871629 TCCTTACATAAGCCACAAAGAAATTA 57.128 30.769 0.00 0.00 32.02 1.40
561 565 7.775053 TCCTTACATAAGCCACAAAGAAATT 57.225 32.000 0.00 0.00 32.02 1.82
562 566 7.669722 TCTTCCTTACATAAGCCACAAAGAAAT 59.330 33.333 0.00 0.00 32.02 2.17
563 567 7.001674 TCTTCCTTACATAAGCCACAAAGAAA 58.998 34.615 0.00 0.00 32.02 2.52
564 568 6.539173 TCTTCCTTACATAAGCCACAAAGAA 58.461 36.000 0.00 0.00 32.02 2.52
565 569 6.121776 TCTTCCTTACATAAGCCACAAAGA 57.878 37.500 0.00 0.00 32.02 2.52
566 570 7.552687 TGTATCTTCCTTACATAAGCCACAAAG 59.447 37.037 0.00 0.00 32.02 2.77
567 571 7.398829 TGTATCTTCCTTACATAAGCCACAAA 58.601 34.615 0.00 0.00 32.02 2.83
568 572 6.953101 TGTATCTTCCTTACATAAGCCACAA 58.047 36.000 0.00 0.00 32.02 3.33
569 573 6.553953 TGTATCTTCCTTACATAAGCCACA 57.446 37.500 0.00 0.00 32.02 4.17
570 574 7.859325 TTTGTATCTTCCTTACATAAGCCAC 57.141 36.000 0.00 0.00 30.13 5.01
596 600 9.665719 TGCTTCTAAATAGTGTTTCATGACATA 57.334 29.630 0.00 0.00 0.00 2.29
597 601 8.454106 GTGCTTCTAAATAGTGTTTCATGACAT 58.546 33.333 0.00 0.00 0.00 3.06
598 602 7.661437 AGTGCTTCTAAATAGTGTTTCATGACA 59.339 33.333 0.00 0.00 0.00 3.58
599 603 7.959651 CAGTGCTTCTAAATAGTGTTTCATGAC 59.040 37.037 0.00 0.00 0.00 3.06
600 604 7.877612 TCAGTGCTTCTAAATAGTGTTTCATGA 59.122 33.333 0.00 0.00 0.00 3.07
601 605 8.032952 TCAGTGCTTCTAAATAGTGTTTCATG 57.967 34.615 0.00 0.00 0.00 3.07
602 606 8.621532 TTCAGTGCTTCTAAATAGTGTTTCAT 57.378 30.769 0.00 0.00 0.00 2.57
603 607 8.621532 ATTCAGTGCTTCTAAATAGTGTTTCA 57.378 30.769 0.00 0.00 0.00 2.69
604 608 9.899226 AAATTCAGTGCTTCTAAATAGTGTTTC 57.101 29.630 0.00 0.00 0.00 2.78
666 670 9.509855 GTGTACACATCACAAAGTTTTATGAAA 57.490 29.630 21.14 0.00 36.05 2.69
667 671 8.678199 TGTGTACACATCACAAAGTTTTATGAA 58.322 29.630 24.62 0.00 41.83 2.57
668 672 8.126074 GTGTGTACACATCACAAAGTTTTATGA 58.874 33.333 30.13 0.00 45.36 2.15
669 673 8.268823 GTGTGTACACATCACAAAGTTTTATG 57.731 34.615 30.13 0.00 45.36 1.90
685 689 5.981174 ACATGTTCGTAAATGTGTGTACAC 58.019 37.500 19.36 19.36 46.59 2.90
686 690 7.734554 CATACATGTTCGTAAATGTGTGTACA 58.265 34.615 2.30 0.00 39.61 2.90
690 694 7.373180 GCATACATACATGTTCGTAAATGTGTG 59.627 37.037 20.74 20.74 45.84 3.82
691 695 7.279981 AGCATACATACATGTTCGTAAATGTGT 59.720 33.333 16.42 9.41 41.97 3.72
692 696 7.630026 AGCATACATACATGTTCGTAAATGTG 58.370 34.615 16.42 9.36 41.97 3.21
693 697 7.786178 AGCATACATACATGTTCGTAAATGT 57.214 32.000 2.30 9.27 41.97 2.71
698 702 9.758651 AGAAAATAGCATACATACATGTTCGTA 57.241 29.630 2.30 6.59 41.97 3.43
699 703 8.662781 AGAAAATAGCATACATACATGTTCGT 57.337 30.769 2.30 4.22 41.97 3.85
700 704 9.935682 AAAGAAAATAGCATACATACATGTTCG 57.064 29.630 2.30 0.00 41.97 3.95
737 741 7.432838 TCCATTTTAAGCACGTTTTAAAGTGTC 59.567 33.333 22.28 3.66 39.96 3.67
739 743 7.687005 TCCATTTTAAGCACGTTTTAAAGTG 57.313 32.000 19.81 19.81 40.62 3.16
744 748 8.480853 CGAAAAATCCATTTTAAGCACGTTTTA 58.519 29.630 0.00 0.00 41.27 1.52
745 749 7.222999 TCGAAAAATCCATTTTAAGCACGTTTT 59.777 29.630 0.00 0.00 41.27 2.43
747 751 6.210078 TCGAAAAATCCATTTTAAGCACGTT 58.790 32.000 0.00 0.00 41.27 3.99
750 754 8.547894 ACTTTTCGAAAAATCCATTTTAAGCAC 58.452 29.630 22.67 0.00 41.27 4.40
752 756 8.009409 CCACTTTTCGAAAAATCCATTTTAAGC 58.991 33.333 22.67 0.00 41.27 3.09
756 760 6.259829 CACCCACTTTTCGAAAAATCCATTTT 59.740 34.615 22.67 2.11 43.85 1.82
761 765 3.057019 GCACCCACTTTTCGAAAAATCC 58.943 45.455 22.67 5.36 0.00 3.01
762 766 3.712187 TGCACCCACTTTTCGAAAAATC 58.288 40.909 22.67 3.12 0.00 2.17
763 767 3.810310 TGCACCCACTTTTCGAAAAAT 57.190 38.095 22.67 11.81 0.00 1.82
765 769 4.804108 CATATGCACCCACTTTTCGAAAA 58.196 39.130 21.35 21.35 0.00 2.29
767 771 2.163412 GCATATGCACCCACTTTTCGAA 59.837 45.455 22.84 0.00 41.59 3.71
769 773 1.202290 GGCATATGCACCCACTTTTCG 60.202 52.381 28.07 0.00 44.36 3.46
770 774 1.136891 GGGCATATGCACCCACTTTTC 59.863 52.381 28.07 7.31 46.22 2.29
771 775 1.194218 GGGCATATGCACCCACTTTT 58.806 50.000 28.07 0.00 46.22 2.27
772 776 2.900547 GGGCATATGCACCCACTTT 58.099 52.632 28.07 0.00 46.22 2.66
773 777 4.684623 GGGCATATGCACCCACTT 57.315 55.556 28.07 0.00 46.22 3.16
777 781 0.112218 TACCATGGGCATATGCACCC 59.888 55.000 26.74 19.95 45.73 4.61
778 782 1.247567 GTACCATGGGCATATGCACC 58.752 55.000 26.74 23.82 45.73 5.01
780 784 0.250684 CCGTACCATGGGCATATGCA 60.251 55.000 28.07 10.14 44.36 3.96
781 785 0.960364 CCCGTACCATGGGCATATGC 60.960 60.000 19.79 19.79 37.67 3.14
784 1639 2.150719 CCCCCGTACCATGGGCATA 61.151 63.158 18.09 0.00 43.35 3.14
803 1658 1.086634 GTCGATTGCAGAGAGGGCAC 61.087 60.000 0.00 0.00 41.75 5.01
804 1659 1.219124 GTCGATTGCAGAGAGGGCA 59.781 57.895 0.00 0.00 40.00 5.36
805 1660 0.529555 GAGTCGATTGCAGAGAGGGC 60.530 60.000 0.00 0.00 0.00 5.19
806 1661 0.248825 CGAGTCGATTGCAGAGAGGG 60.249 60.000 6.73 0.00 0.00 4.30
807 1662 0.735471 TCGAGTCGATTGCAGAGAGG 59.265 55.000 12.09 0.00 0.00 3.69
808 1663 2.772568 ATCGAGTCGATTGCAGAGAG 57.227 50.000 22.14 0.00 44.59 3.20
819 2973 2.571528 CTCGGAGCAAATCGAGTCG 58.428 57.895 6.09 6.09 45.27 4.18
830 2984 1.089920 ATTGTGATTGCACTCGGAGC 58.910 50.000 4.58 0.00 45.36 4.70
839 2999 5.446473 GCTATGCTATCCGTATTGTGATTGC 60.446 44.000 0.00 0.00 39.26 3.56
870 3030 2.863137 GAGTTCGATGTTGCTCTGGATC 59.137 50.000 0.00 0.00 0.00 3.36
882 3054 1.485397 CGAGCAGATGGAGTTCGATG 58.515 55.000 0.00 0.00 41.35 3.84
940 3121 2.275418 GCACCACCCGGATTCCAT 59.725 61.111 0.73 0.00 35.59 3.41
941 3122 4.402528 CGCACCACCCGGATTCCA 62.403 66.667 0.73 0.00 35.59 3.53
973 3210 2.918549 GCATGATCGACTAGGCTACGTG 60.919 54.545 0.00 0.00 0.00 4.49
1606 4073 2.690778 GCGGTGGAGGATGTGTTGC 61.691 63.158 0.00 0.00 0.00 4.17
1844 4314 4.310288 GGCCTTGAACAGCCTCTC 57.690 61.111 0.00 0.00 46.14 3.20
1848 4318 1.452145 TTTGTCGGCCTTGAACAGCC 61.452 55.000 0.00 0.00 46.17 4.85
2599 6185 1.035385 TGCTCAGTTCGCGAGGGATA 61.035 55.000 9.59 0.00 0.00 2.59
2602 6188 2.169789 CATGCTCAGTTCGCGAGGG 61.170 63.158 9.59 0.00 0.00 4.30
2603 6189 1.016130 AACATGCTCAGTTCGCGAGG 61.016 55.000 9.59 3.29 0.00 4.63
2605 6191 0.599991 ACAACATGCTCAGTTCGCGA 60.600 50.000 3.71 3.71 0.00 5.87
2808 7694 7.312154 TGTCCAAAATGTCAAGTATTATGCAC 58.688 34.615 0.00 0.00 0.00 4.57
2819 7710 7.523293 AATGTATCACTGTCCAAAATGTCAA 57.477 32.000 0.00 0.00 0.00 3.18
3002 7970 7.960738 ACTATTCACGTTATTTCGGTCAAAATG 59.039 33.333 0.00 0.00 34.94 2.32
3009 7977 4.866486 GGTCACTATTCACGTTATTTCGGT 59.134 41.667 0.00 0.00 34.94 4.69
3149 8121 9.379791 CCTAATATGGGGAACGAATTACTAATC 57.620 37.037 0.00 0.00 0.00 1.75
3154 8126 6.293698 ACACCTAATATGGGGAACGAATTAC 58.706 40.000 0.00 0.00 33.92 1.89
3188 8161 4.289148 TCGGAAAATACCCTTTGGTTCCTA 59.711 41.667 0.00 0.00 44.75 2.94
3194 8167 3.081710 ACCTCGGAAAATACCCTTTGG 57.918 47.619 0.00 0.00 37.80 3.28
3198 8171 3.433173 GCATGTACCTCGGAAAATACCCT 60.433 47.826 0.00 0.00 0.00 4.34
3199 8172 2.876550 GCATGTACCTCGGAAAATACCC 59.123 50.000 0.00 0.00 0.00 3.69
3201 8174 5.989777 AGTATGCATGTACCTCGGAAAATAC 59.010 40.000 10.16 0.00 0.00 1.89
3203 8176 5.036117 AGTATGCATGTACCTCGGAAAAT 57.964 39.130 10.16 0.00 0.00 1.82
3204 8177 4.439057 GAGTATGCATGTACCTCGGAAAA 58.561 43.478 10.16 0.00 0.00 2.29
3208 8181 1.686587 TGGAGTATGCATGTACCTCGG 59.313 52.381 10.16 0.00 0.00 4.63
3306 9136 5.661458 ACACTCTATATTTGTCCTTGACCG 58.339 41.667 0.00 0.00 0.00 4.79
3315 9145 5.815581 TGGGCTTCAACACTCTATATTTGT 58.184 37.500 0.00 0.00 0.00 2.83
3330 9160 1.317613 GTGTGTGAACATGGGCTTCA 58.682 50.000 0.00 0.00 0.00 3.02
3462 9308 5.693769 TGCCTAAATAGAGCACTAACCTT 57.306 39.130 0.00 0.00 32.04 3.50
3464 9310 6.318900 ACATTTGCCTAAATAGAGCACTAACC 59.681 38.462 0.00 0.00 35.96 2.85
3522 9368 6.647334 TCATGTAAAGCCAGTCAATTTTCA 57.353 33.333 0.00 0.00 0.00 2.69
3599 9446 9.570488 CACTTATCGTAGCTATAAATAACCTCC 57.430 37.037 0.00 0.00 0.00 4.30
3643 9490 1.361668 ATAGCCTCAACGCTTGCACG 61.362 55.000 0.00 0.00 40.39 5.34
3645 9492 1.207089 ACTATAGCCTCAACGCTTGCA 59.793 47.619 0.00 0.00 40.39 4.08
3648 9495 2.500098 TGGAACTATAGCCTCAACGCTT 59.500 45.455 0.00 0.00 40.39 4.68
3683 9531 2.771372 ACCCACAATTTTGTTGGCTCTT 59.229 40.909 12.19 0.00 45.21 2.85
3696 9544 0.178909 TTCCCATGCCAACCCACAAT 60.179 50.000 0.00 0.00 0.00 2.71
3713 9561 1.986378 CGTCCTCGTCACATGAGTTTC 59.014 52.381 0.00 0.00 29.27 2.78
3718 9566 0.608308 AGGTCGTCCTCGTCACATGA 60.608 55.000 0.00 0.00 40.58 3.07
3727 9575 4.787260 AGAAGAAGTTAAGGTCGTCCTC 57.213 45.455 0.46 0.00 44.35 3.71
3741 9589 3.209410 GGTGGTGGATGCATAGAAGAAG 58.791 50.000 0.00 0.00 0.00 2.85
3765 9613 2.036958 TATCTCCGTTGCCCACAATG 57.963 50.000 0.00 0.00 41.63 2.82
3766 9614 2.752903 GTTTATCTCCGTTGCCCACAAT 59.247 45.455 0.00 0.00 38.27 2.71
3767 9615 2.156098 GTTTATCTCCGTTGCCCACAA 58.844 47.619 0.00 0.00 0.00 3.33
3768 9616 1.612199 GGTTTATCTCCGTTGCCCACA 60.612 52.381 0.00 0.00 0.00 4.17
3769 9617 1.092348 GGTTTATCTCCGTTGCCCAC 58.908 55.000 0.00 0.00 0.00 4.61
3777 9627 4.404715 TCCTAGAAAGGTGGTTTATCTCCG 59.595 45.833 0.00 0.00 44.09 4.63
3782 9632 4.473922 GGGAGTCCTAGAAAGGTGGTTTAT 59.526 45.833 9.58 0.00 44.09 1.40
3818 9668 2.666596 GATGTCCCTAGGCTTGCGGG 62.667 65.000 2.05 9.28 39.41 6.13
3862 9712 2.306847 GCACCTTCCAAGTTTTCCTCA 58.693 47.619 0.00 0.00 0.00 3.86
3866 9716 1.673920 TCACGCACCTTCCAAGTTTTC 59.326 47.619 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.