Multiple sequence alignment - TraesCS4A01G053300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G053300 chr4A 100.000 3170 0 0 1 3170 45116702 45113533 0.000000e+00 5854.0
1 TraesCS4A01G053300 chr4A 91.813 171 14 0 659 829 380072182 380072012 4.090000e-59 239.0
2 TraesCS4A01G053300 chr4A 91.603 131 11 0 503 633 433708830 433708700 6.980000e-42 182.0
3 TraesCS4A01G053300 chr4A 88.722 133 14 1 501 633 433659248 433659117 9.100000e-36 161.0
4 TraesCS4A01G053300 chr4A 95.238 42 1 1 455 496 374413205 374413165 7.340000e-07 65.8
5 TraesCS4A01G053300 chr2A 93.438 701 29 7 2042 2728 752286309 752287006 0.000000e+00 1024.0
6 TraesCS4A01G053300 chr2A 95.122 41 0 2 457 496 360427209 360427248 2.640000e-06 63.9
7 TraesCS4A01G053300 chr2A 95.122 41 0 2 457 496 376692897 376692936 2.640000e-06 63.9
8 TraesCS4A01G053300 chr2B 88.504 635 36 11 2120 2728 30139305 30139928 0.000000e+00 734.0
9 TraesCS4A01G053300 chr2B 93.413 167 11 0 1395 1561 30136444 30136610 6.790000e-62 248.0
10 TraesCS4A01G053300 chr2B 91.279 172 14 1 659 829 172786912 172786741 1.900000e-57 233.0
11 TraesCS4A01G053300 chr2B 90.643 171 16 0 659 829 605585067 605584897 8.850000e-56 228.0
12 TraesCS4A01G053300 chr4D 91.546 485 20 6 839 1318 419442048 419442516 0.000000e+00 649.0
13 TraesCS4A01G053300 chr4D 89.827 462 23 13 2729 3170 419442507 419442964 3.550000e-159 571.0
14 TraesCS4A01G053300 chr4D 93.949 314 17 2 1 314 419438461 419438772 1.030000e-129 473.0
15 TraesCS4A01G053300 chr4D 95.954 173 7 0 327 499 419600309 419600137 6.690000e-72 281.0
16 TraesCS4A01G053300 chr4D 94.220 173 10 0 327 499 419615507 419615335 6.740000e-67 265.0
17 TraesCS4A01G053300 chr4D 91.813 171 14 0 659 829 368230261 368230091 4.090000e-59 239.0
18 TraesCS4A01G053300 chr4D 94.697 132 6 1 327 457 419584139 419584008 1.490000e-48 204.0
19 TraesCS4A01G053300 chr4D 93.939 132 7 1 327 457 419581667 419581536 6.940000e-47 198.0
20 TraesCS4A01G053300 chr4B 83.223 757 70 32 1423 2153 458894559 458895284 2.670000e-180 641.0
21 TraesCS4A01G053300 chr4B 93.980 299 16 2 4 302 517559205 517559501 4.820000e-123 451.0
22 TraesCS4A01G053300 chr4B 90.432 324 17 3 2405 2728 458902618 458902927 6.330000e-112 414.0
23 TraesCS4A01G053300 chr4B 91.364 220 15 3 2954 3170 517561434 517561652 6.650000e-77 298.0
24 TraesCS4A01G053300 chr4B 86.010 193 12 4 2729 2908 517561236 517561426 3.230000e-45 193.0
25 TraesCS4A01G053300 chr4B 96.629 89 2 1 917 1005 517559639 517559726 2.550000e-31 147.0
26 TraesCS4A01G053300 chr4B 94.805 77 4 0 1130 1206 517559727 517559803 1.540000e-23 121.0
27 TraesCS4A01G053300 chr4B 90.000 90 8 1 1212 1300 517560970 517561059 7.190000e-22 115.0
28 TraesCS4A01G053300 chr4B 96.923 65 2 0 2343 2407 458902447 458902511 3.340000e-20 110.0
29 TraesCS4A01G053300 chr4B 88.889 72 4 1 826 897 517559523 517559590 5.630000e-13 86.1
30 TraesCS4A01G053300 chr4B 93.182 44 2 1 456 499 458319863 458319821 2.640000e-06 63.9
31 TraesCS4A01G053300 chr7A 86.486 333 21 12 2396 2728 20289349 20289041 8.420000e-91 344.0
32 TraesCS4A01G053300 chr7A 90.840 131 8 1 503 633 140987893 140987767 4.200000e-39 172.0
33 TraesCS4A01G053300 chr7A 90.840 131 8 3 503 633 141851574 141851448 4.200000e-39 172.0
34 TraesCS4A01G053300 chr7A 90.840 131 8 1 503 633 142134466 142134340 4.200000e-39 172.0
35 TraesCS4A01G053300 chr7A 86.709 158 15 2 1318 1469 20290275 20290118 1.510000e-38 171.0
36 TraesCS4A01G053300 chr7A 90.076 131 9 1 503 633 141265088 141264962 1.960000e-37 167.0
37 TraesCS4A01G053300 chr7A 89.313 131 10 1 503 633 141570754 141570628 9.100000e-36 161.0
38 TraesCS4A01G053300 chr1D 91.429 175 15 0 659 833 250990770 250990944 1.140000e-59 241.0
39 TraesCS4A01G053300 chr7D 92.262 168 13 0 659 826 264801557 264801724 4.090000e-59 239.0
40 TraesCS4A01G053300 chr6B 90.857 175 16 0 659 833 570570954 570570780 5.290000e-58 235.0
41 TraesCS4A01G053300 chr6B 94.000 100 6 0 2629 2728 172290266 172290365 5.480000e-33 152.0
42 TraesCS4A01G053300 chr1B 90.286 175 17 0 659 833 443273024 443273198 2.460000e-56 230.0
43 TraesCS4A01G053300 chr5B 91.071 168 15 0 659 826 369031692 369031859 8.850000e-56 228.0
44 TraesCS4A01G053300 chr5B 95.455 132 5 1 327 457 683671639 683671770 3.200000e-50 209.0
45 TraesCS4A01G053300 chr5B 95.455 132 5 1 327 457 683674303 683674434 3.200000e-50 209.0
46 TraesCS4A01G053300 chr5B 95.455 132 5 1 327 457 683676475 683676606 3.200000e-50 209.0
47 TraesCS4A01G053300 chr5B 94.697 132 6 1 327 457 683697847 683697978 1.490000e-48 204.0
48 TraesCS4A01G053300 chr5B 94.697 132 6 1 327 457 703374704 703374835 1.490000e-48 204.0
49 TraesCS4A01G053300 chr5B 97.917 48 1 0 2490 2537 441382900 441382947 2.030000e-12 84.2
50 TraesCS4A01G053300 chr5B 93.182 44 1 2 457 500 636980879 636980838 2.640000e-06 63.9
51 TraesCS4A01G053300 chr5D 95.556 45 1 1 455 498 466652581 466652625 1.580000e-08 71.3
52 TraesCS4A01G053300 chr6D 95.455 44 1 1 455 497 6866637 6866680 5.670000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G053300 chr4A 45113533 45116702 3169 True 5854.000000 5854 100.000000 1 3170 1 chr4A.!!$R1 3169
1 TraesCS4A01G053300 chr2A 752286309 752287006 697 False 1024.000000 1024 93.438000 2042 2728 1 chr2A.!!$F3 686
2 TraesCS4A01G053300 chr2B 30136444 30139928 3484 False 491.000000 734 90.958500 1395 2728 2 chr2B.!!$F1 1333
3 TraesCS4A01G053300 chr4D 419438461 419442964 4503 False 564.333333 649 91.774000 1 3170 3 chr4D.!!$F1 3169
4 TraesCS4A01G053300 chr4D 419581536 419584139 2603 True 201.000000 204 94.318000 327 457 2 chr4D.!!$R4 130
5 TraesCS4A01G053300 chr4B 458894559 458895284 725 False 641.000000 641 83.223000 1423 2153 1 chr4B.!!$F1 730
6 TraesCS4A01G053300 chr4B 517559205 517561652 2447 False 201.585714 451 91.668143 4 3170 7 chr4B.!!$F3 3166
7 TraesCS4A01G053300 chr7A 20289041 20290275 1234 True 257.500000 344 86.597500 1318 2728 2 chr7A.!!$R6 1410
8 TraesCS4A01G053300 chr5B 683671639 683676606 4967 False 209.000000 209 95.455000 327 457 3 chr5B.!!$F5 130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 1584 0.096976 CTAGAAAACATGCCCGTGCG 59.903 55.0 0.0 0.0 41.78 5.34 F
1348 7657 0.249953 TTTTGAGCTTACGCACCCGA 60.250 50.0 0.0 0.0 39.10 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 10416 0.038709 TACATGTTGCAAAAGCGGGC 60.039 50.0 2.3 0.0 0.0 6.13 R
3083 12299 0.625849 AGAAGTACAAGGGCATGGGG 59.374 55.0 0.0 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.392998 ACCCTTATCAGCGCCACTTG 60.393 55.000 2.29 0.00 0.00 3.16
30 31 1.537202 GCGCCACTTGAAGACTTGATT 59.463 47.619 0.00 0.00 0.00 2.57
41 42 6.409524 TGAAGACTTGATTGGCAGATTTTT 57.590 33.333 0.00 0.00 0.00 1.94
42 43 6.218019 TGAAGACTTGATTGGCAGATTTTTG 58.782 36.000 0.00 0.00 0.00 2.44
68 69 9.683069 GAGATTAACAAAATCATCACAAACACT 57.317 29.630 1.01 0.00 0.00 3.55
220 221 2.660362 GCTATGCTTAATTCGCTCGTGC 60.660 50.000 0.00 0.00 0.00 5.34
314 315 4.041815 TGGCAGTTGGTTACTTGGTGTATA 59.958 41.667 0.00 0.00 33.85 1.47
315 316 5.190677 GGCAGTTGGTTACTTGGTGTATAT 58.809 41.667 0.00 0.00 33.85 0.86
316 317 6.070136 TGGCAGTTGGTTACTTGGTGTATATA 60.070 38.462 0.00 0.00 33.85 0.86
317 318 6.996282 GGCAGTTGGTTACTTGGTGTATATAT 59.004 38.462 0.00 0.00 33.85 0.86
371 372 2.203788 ACCAGAGGCAGAACCGGA 60.204 61.111 9.46 0.00 46.52 5.14
385 386 3.888930 AGAACCGGAACAAACATCAACAT 59.111 39.130 9.46 0.00 0.00 2.71
470 1578 6.803154 ACAAGTCTTACTAGAAAACATGCC 57.197 37.500 0.00 0.00 30.65 4.40
471 1579 5.705905 ACAAGTCTTACTAGAAAACATGCCC 59.294 40.000 0.00 0.00 30.65 5.36
473 1581 4.020485 AGTCTTACTAGAAAACATGCCCGT 60.020 41.667 0.00 0.00 30.65 5.28
475 1583 1.165270 ACTAGAAAACATGCCCGTGC 58.835 50.000 0.00 0.00 38.26 5.34
476 1584 0.096976 CTAGAAAACATGCCCGTGCG 59.903 55.000 0.00 0.00 41.78 5.34
477 1585 0.604243 TAGAAAACATGCCCGTGCGT 60.604 50.000 0.00 0.00 41.78 5.24
478 1586 1.007849 GAAAACATGCCCGTGCGTT 60.008 52.632 0.00 0.00 41.78 4.84
479 1587 1.274798 GAAAACATGCCCGTGCGTTG 61.275 55.000 0.00 0.00 41.78 4.10
480 1588 3.839642 AAACATGCCCGTGCGTTGC 62.840 57.895 0.00 0.00 41.78 4.17
497 1605 4.692371 GTTGCAACGGAGAAAAACAATC 57.308 40.909 14.90 0.00 0.00 2.67
498 1606 3.363341 TGCAACGGAGAAAAACAATCC 57.637 42.857 0.00 0.00 0.00 3.01
499 1607 2.690497 TGCAACGGAGAAAAACAATCCA 59.310 40.909 0.00 0.00 32.31 3.41
502 1610 5.010112 TGCAACGGAGAAAAACAATCCATAA 59.990 36.000 0.00 0.00 32.31 1.90
504 1612 5.310720 ACGGAGAAAAACAATCCATAAGC 57.689 39.130 0.00 0.00 32.31 3.09
506 1614 4.672409 GGAGAAAAACAATCCATAAGCGG 58.328 43.478 0.00 0.00 33.08 5.52
510 1618 6.617879 AGAAAAACAATCCATAAGCGGTTAC 58.382 36.000 9.61 0.00 0.00 2.50
511 1619 6.433093 AGAAAAACAATCCATAAGCGGTTACT 59.567 34.615 9.61 0.00 0.00 2.24
512 1620 5.813080 AAACAATCCATAAGCGGTTACTC 57.187 39.130 9.61 0.00 0.00 2.59
514 1622 4.694339 ACAATCCATAAGCGGTTACTCTC 58.306 43.478 9.61 0.00 0.00 3.20
516 1624 1.679680 TCCATAAGCGGTTACTCTCGG 59.320 52.381 9.61 5.85 0.00 4.63
517 1625 1.269621 CCATAAGCGGTTACTCTCGGG 60.270 57.143 9.61 1.50 0.00 5.14
520 1628 0.683412 AAGCGGTTACTCTCGGGTTT 59.317 50.000 0.00 0.00 0.00 3.27
521 1629 0.683412 AGCGGTTACTCTCGGGTTTT 59.317 50.000 0.00 0.00 0.00 2.43
522 1630 1.073964 GCGGTTACTCTCGGGTTTTC 58.926 55.000 0.00 0.00 0.00 2.29
535 1643 3.660501 GGGTTTTCCGCTTTTGAGAAT 57.339 42.857 0.00 0.00 41.82 2.40
536 1644 3.990092 GGGTTTTCCGCTTTTGAGAATT 58.010 40.909 0.00 0.00 41.82 2.17
537 1645 3.987868 GGGTTTTCCGCTTTTGAGAATTC 59.012 43.478 0.00 0.00 41.82 2.17
538 1646 3.987868 GGTTTTCCGCTTTTGAGAATTCC 59.012 43.478 0.65 0.00 0.00 3.01
539 1647 4.500716 GGTTTTCCGCTTTTGAGAATTCCA 60.501 41.667 0.65 0.00 0.00 3.53
540 1648 5.230182 GTTTTCCGCTTTTGAGAATTCCAT 58.770 37.500 0.65 0.00 0.00 3.41
541 1649 5.467035 TTTCCGCTTTTGAGAATTCCATT 57.533 34.783 0.65 0.00 0.00 3.16
542 1650 6.582677 TTTCCGCTTTTGAGAATTCCATTA 57.417 33.333 0.65 0.00 0.00 1.90
543 1651 5.560966 TCCGCTTTTGAGAATTCCATTAC 57.439 39.130 0.65 0.00 0.00 1.89
544 1652 4.094294 TCCGCTTTTGAGAATTCCATTACG 59.906 41.667 0.65 0.00 0.00 3.18
545 1653 4.342772 CGCTTTTGAGAATTCCATTACGG 58.657 43.478 0.65 0.00 0.00 4.02
546 1654 4.142687 CGCTTTTGAGAATTCCATTACGGT 60.143 41.667 0.65 0.00 35.57 4.83
547 1655 5.064198 CGCTTTTGAGAATTCCATTACGGTA 59.936 40.000 0.65 0.00 35.57 4.02
548 1656 6.238374 CGCTTTTGAGAATTCCATTACGGTAT 60.238 38.462 0.65 0.00 35.57 2.73
549 1657 7.480810 GCTTTTGAGAATTCCATTACGGTATT 58.519 34.615 0.65 0.00 37.46 1.89
550 1658 8.617809 GCTTTTGAGAATTCCATTACGGTATTA 58.382 33.333 0.65 0.00 35.07 0.98
552 1660 8.671384 TTTGAGAATTCCATTACGGTATTAGG 57.329 34.615 0.65 0.00 35.07 2.69
553 1661 7.606135 TGAGAATTCCATTACGGTATTAGGA 57.394 36.000 0.65 0.00 35.07 2.94
554 1662 8.202461 TGAGAATTCCATTACGGTATTAGGAT 57.798 34.615 0.65 0.00 35.07 3.24
555 1663 8.656806 TGAGAATTCCATTACGGTATTAGGATT 58.343 33.333 0.65 0.00 35.07 3.01
556 1664 8.848474 AGAATTCCATTACGGTATTAGGATTG 57.152 34.615 0.65 0.00 35.07 2.67
557 1665 8.656806 AGAATTCCATTACGGTATTAGGATTGA 58.343 33.333 0.65 0.00 35.07 2.57
558 1666 9.280174 GAATTCCATTACGGTATTAGGATTGAA 57.720 33.333 0.00 0.00 35.07 2.69
559 1667 8.617290 ATTCCATTACGGTATTAGGATTGAAC 57.383 34.615 5.07 0.00 35.57 3.18
560 1668 6.218019 TCCATTACGGTATTAGGATTGAACG 58.782 40.000 0.00 0.00 35.57 3.95
561 1669 6.040729 TCCATTACGGTATTAGGATTGAACGA 59.959 38.462 0.00 0.00 35.57 3.85
562 1670 6.872020 CCATTACGGTATTAGGATTGAACGAT 59.128 38.462 0.00 0.00 0.00 3.73
563 1671 7.063074 CCATTACGGTATTAGGATTGAACGATC 59.937 40.741 0.00 0.00 0.00 3.69
564 1672 5.786264 ACGGTATTAGGATTGAACGATCT 57.214 39.130 0.00 0.00 0.00 2.75
565 1673 5.529791 ACGGTATTAGGATTGAACGATCTG 58.470 41.667 0.00 0.00 0.00 2.90
566 1674 4.386049 CGGTATTAGGATTGAACGATCTGC 59.614 45.833 0.00 0.00 0.00 4.26
567 1675 5.542779 GGTATTAGGATTGAACGATCTGCT 58.457 41.667 0.00 0.00 0.00 4.24
568 1676 5.635700 GGTATTAGGATTGAACGATCTGCTC 59.364 44.000 0.00 0.00 0.00 4.26
577 1685 3.345737 CGATCTGCTCGGCTTGTAA 57.654 52.632 0.00 0.00 43.82 2.41
578 1686 1.858091 CGATCTGCTCGGCTTGTAAT 58.142 50.000 0.00 0.00 43.82 1.89
579 1687 1.789464 CGATCTGCTCGGCTTGTAATC 59.211 52.381 0.00 0.00 43.82 1.75
580 1688 2.799562 CGATCTGCTCGGCTTGTAATCA 60.800 50.000 0.00 0.00 43.82 2.57
581 1689 2.988010 TCTGCTCGGCTTGTAATCAT 57.012 45.000 0.00 0.00 0.00 2.45
582 1690 3.266510 TCTGCTCGGCTTGTAATCATT 57.733 42.857 0.00 0.00 0.00 2.57
583 1691 3.198068 TCTGCTCGGCTTGTAATCATTC 58.802 45.455 0.00 0.00 0.00 2.67
584 1692 3.118629 TCTGCTCGGCTTGTAATCATTCT 60.119 43.478 0.00 0.00 0.00 2.40
585 1693 2.938451 TGCTCGGCTTGTAATCATTCTG 59.062 45.455 0.00 0.00 0.00 3.02
586 1694 2.289002 GCTCGGCTTGTAATCATTCTGG 59.711 50.000 0.00 0.00 0.00 3.86
587 1695 3.797039 CTCGGCTTGTAATCATTCTGGA 58.203 45.455 0.00 0.00 0.00 3.86
588 1696 4.191544 CTCGGCTTGTAATCATTCTGGAA 58.808 43.478 0.00 0.00 0.00 3.53
589 1697 4.780815 TCGGCTTGTAATCATTCTGGAAT 58.219 39.130 0.00 0.00 0.00 3.01
590 1698 5.192927 TCGGCTTGTAATCATTCTGGAATT 58.807 37.500 0.00 0.00 0.00 2.17
591 1699 5.652014 TCGGCTTGTAATCATTCTGGAATTT 59.348 36.000 0.00 0.00 0.00 1.82
592 1700 5.973565 CGGCTTGTAATCATTCTGGAATTTC 59.026 40.000 0.00 0.00 0.00 2.17
593 1701 6.404623 CGGCTTGTAATCATTCTGGAATTTCA 60.405 38.462 0.00 0.00 0.00 2.69
594 1702 7.495055 GGCTTGTAATCATTCTGGAATTTCAT 58.505 34.615 0.00 0.00 0.00 2.57
595 1703 7.650903 GGCTTGTAATCATTCTGGAATTTCATC 59.349 37.037 0.00 0.00 0.00 2.92
596 1704 8.192774 GCTTGTAATCATTCTGGAATTTCATCA 58.807 33.333 0.00 0.00 0.00 3.07
599 1707 8.635328 TGTAATCATTCTGGAATTTCATCATGG 58.365 33.333 0.00 0.00 0.00 3.66
600 1708 7.670605 AATCATTCTGGAATTTCATCATGGT 57.329 32.000 0.00 0.00 0.00 3.55
601 1709 8.771521 AATCATTCTGGAATTTCATCATGGTA 57.228 30.769 0.00 0.00 0.00 3.25
602 1710 8.951614 ATCATTCTGGAATTTCATCATGGTAT 57.048 30.769 0.00 0.00 0.00 2.73
603 1711 8.400184 TCATTCTGGAATTTCATCATGGTATC 57.600 34.615 0.00 0.00 0.00 2.24
604 1712 8.000127 TCATTCTGGAATTTCATCATGGTATCA 59.000 33.333 0.00 0.00 0.00 2.15
605 1713 7.812690 TTCTGGAATTTCATCATGGTATCAG 57.187 36.000 0.00 0.00 0.00 2.90
606 1714 6.903516 TCTGGAATTTCATCATGGTATCAGT 58.096 36.000 0.00 0.00 0.00 3.41
607 1715 8.033178 TCTGGAATTTCATCATGGTATCAGTA 57.967 34.615 0.00 0.00 0.00 2.74
608 1716 8.493607 TCTGGAATTTCATCATGGTATCAGTAA 58.506 33.333 0.00 0.00 0.00 2.24
609 1717 9.293404 CTGGAATTTCATCATGGTATCAGTAAT 57.707 33.333 0.00 0.00 0.00 1.89
610 1718 9.070179 TGGAATTTCATCATGGTATCAGTAATG 57.930 33.333 0.00 0.00 0.00 1.90
611 1719 9.288576 GGAATTTCATCATGGTATCAGTAATGA 57.711 33.333 0.00 0.00 33.80 2.57
614 1722 7.713764 TTCATCATGGTATCAGTAATGAACG 57.286 36.000 0.00 0.00 33.06 3.95
615 1723 7.049799 TCATCATGGTATCAGTAATGAACGA 57.950 36.000 0.00 0.00 33.06 3.85
616 1724 7.670364 TCATCATGGTATCAGTAATGAACGAT 58.330 34.615 0.00 0.00 33.06 3.73
617 1725 7.814587 TCATCATGGTATCAGTAATGAACGATC 59.185 37.037 0.00 0.00 33.06 3.69
618 1726 6.455647 TCATGGTATCAGTAATGAACGATCC 58.544 40.000 0.00 0.00 0.00 3.36
619 1727 5.862678 TGGTATCAGTAATGAACGATCCA 57.137 39.130 0.00 0.00 0.00 3.41
630 1738 1.936547 GAACGATCCACTTGGCTGATC 59.063 52.381 0.00 0.00 34.44 2.92
631 1739 0.904649 ACGATCCACTTGGCTGATCA 59.095 50.000 0.00 0.00 35.68 2.92
634 1742 2.295885 GATCCACTTGGCTGATCAAGG 58.704 52.381 13.14 0.00 46.04 3.61
636 1744 1.704628 TCCACTTGGCTGATCAAGGAA 59.295 47.619 13.14 0.00 46.04 3.36
638 1746 2.686915 CCACTTGGCTGATCAAGGAATC 59.313 50.000 13.14 0.00 46.04 2.52
639 1747 3.349927 CACTTGGCTGATCAAGGAATCA 58.650 45.455 13.14 0.00 46.04 2.57
640 1748 3.760151 CACTTGGCTGATCAAGGAATCAA 59.240 43.478 13.14 0.00 46.04 2.57
641 1749 4.219070 CACTTGGCTGATCAAGGAATCAAA 59.781 41.667 13.14 0.00 46.04 2.69
644 1752 2.100418 GGCTGATCAAGGAATCAAAGCC 59.900 50.000 0.00 0.00 38.82 4.35
647 1755 4.741342 CTGATCAAGGAATCAAAGCCAAC 58.259 43.478 0.00 0.00 35.32 3.77
650 1758 2.892852 TCAAGGAATCAAAGCCAACCAG 59.107 45.455 0.00 0.00 0.00 4.00
653 1761 2.376518 AGGAATCAAAGCCAACCAGAGA 59.623 45.455 0.00 0.00 0.00 3.10
654 1762 2.489722 GGAATCAAAGCCAACCAGAGAC 59.510 50.000 0.00 0.00 0.00 3.36
656 1992 4.565652 GGAATCAAAGCCAACCAGAGACTA 60.566 45.833 0.00 0.00 0.00 2.59
659 1995 4.157246 TCAAAGCCAACCAGAGACTAGTA 58.843 43.478 0.00 0.00 0.00 1.82
663 1999 3.258622 AGCCAACCAGAGACTAGTAACAC 59.741 47.826 0.00 0.00 0.00 3.32
664 2000 3.258622 GCCAACCAGAGACTAGTAACACT 59.741 47.826 0.00 0.00 0.00 3.55
666 2002 4.523173 CCAACCAGAGACTAGTAACACTCA 59.477 45.833 10.87 0.00 32.59 3.41
675 2011 9.682465 AGAGACTAGTAACACTCACAACATATA 57.318 33.333 10.87 0.00 32.59 0.86
682 2018 9.698309 AGTAACACTCACAACATATATATGAGC 57.302 33.333 26.05 3.97 40.39 4.26
683 2019 9.476202 GTAACACTCACAACATATATATGAGCA 57.524 33.333 26.05 9.64 40.39 4.26
684 2020 8.962884 AACACTCACAACATATATATGAGCAA 57.037 30.769 26.05 10.52 40.39 3.91
685 2021 8.962884 ACACTCACAACATATATATGAGCAAA 57.037 30.769 26.05 9.72 40.39 3.68
686 2022 9.394767 ACACTCACAACATATATATGAGCAAAA 57.605 29.630 26.05 8.42 40.39 2.44
689 2025 9.390795 CTCACAACATATATATGAGCAAAAAGC 57.609 33.333 26.05 0.00 39.23 3.51
704 2183 4.735338 GCAAAAAGCTTCAACTAGACACAC 59.265 41.667 0.00 0.00 41.15 3.82
706 2185 5.741388 AAAAGCTTCAACTAGACACACAG 57.259 39.130 0.00 0.00 0.00 3.66
709 2188 5.023533 AGCTTCAACTAGACACACAGAAA 57.976 39.130 0.00 0.00 0.00 2.52
711 2190 5.050490 GCTTCAACTAGACACACAGAAAGA 58.950 41.667 0.00 0.00 0.00 2.52
714 2193 7.062839 GCTTCAACTAGACACACAGAAAGATAG 59.937 40.741 0.00 0.00 0.00 2.08
721 2200 5.546499 AGACACACAGAAAGATAGGGGTTTA 59.454 40.000 0.00 0.00 0.00 2.01
722 2201 6.215636 AGACACACAGAAAGATAGGGGTTTAT 59.784 38.462 0.00 0.00 0.00 1.40
726 2205 9.408648 CACACAGAAAGATAGGGGTTTATAATT 57.591 33.333 0.00 0.00 0.00 1.40
729 2208 9.338622 ACAGAAAGATAGGGGTTTATAATTTCG 57.661 33.333 0.00 0.00 31.06 3.46
730 2209 8.290325 CAGAAAGATAGGGGTTTATAATTTCGC 58.710 37.037 0.00 0.00 31.06 4.70
732 2211 6.449830 AGATAGGGGTTTATAATTTCGCCT 57.550 37.500 18.14 18.14 43.68 5.52
744 2735 4.983671 AATTTCGCCTCCCAACTTATTC 57.016 40.909 0.00 0.00 0.00 1.75
746 2737 2.396590 TCGCCTCCCAACTTATTCAC 57.603 50.000 0.00 0.00 0.00 3.18
747 2738 1.065709 TCGCCTCCCAACTTATTCACC 60.066 52.381 0.00 0.00 0.00 4.02
749 2740 2.369394 GCCTCCCAACTTATTCACCTG 58.631 52.381 0.00 0.00 0.00 4.00
754 3188 4.651778 TCCCAACTTATTCACCTGAACAG 58.348 43.478 0.00 0.00 36.80 3.16
757 3191 5.063204 CCAACTTATTCACCTGAACAGTGA 58.937 41.667 0.00 0.00 36.80 3.41
762 3196 4.908601 ATTCACCTGAACAGTGATACCA 57.091 40.909 0.00 0.00 36.80 3.25
765 3199 3.389656 TCACCTGAACAGTGATACCAACA 59.610 43.478 0.00 0.00 0.00 3.33
768 3202 5.937540 CACCTGAACAGTGATACCAACAATA 59.062 40.000 0.00 0.00 0.00 1.90
770 3204 7.121168 CACCTGAACAGTGATACCAACAATAAT 59.879 37.037 0.00 0.00 0.00 1.28
771 3205 8.325787 ACCTGAACAGTGATACCAACAATAATA 58.674 33.333 0.00 0.00 0.00 0.98
772 3206 9.173021 CCTGAACAGTGATACCAACAATAATAA 57.827 33.333 0.00 0.00 0.00 1.40
773 3207 9.988350 CTGAACAGTGATACCAACAATAATAAC 57.012 33.333 0.00 0.00 0.00 1.89
799 4131 4.165565 ATGATCACTCACATCCAACTGGAT 59.834 41.667 5.36 5.36 43.56 3.41
800 4132 5.367644 ATGATCACTCACATCCAACTGGATA 59.632 40.000 10.93 0.00 42.85 2.59
802 4134 7.236225 ATGATCACTCACATCCAACTGGATATA 59.764 37.037 10.93 0.00 42.85 0.86
813 4145 7.559335 TCCAACTGGATATATGTGCTTAGAT 57.441 36.000 0.00 0.00 39.78 1.98
815 4147 7.455953 TCCAACTGGATATATGTGCTTAGATCT 59.544 37.037 0.00 0.00 39.78 2.75
821 4153 7.051000 GGATATATGTGCTTAGATCTTTCCCC 58.949 42.308 0.00 0.00 0.00 4.81
828 4160 3.137360 GCTTAGATCTTTCCCCACCAGAT 59.863 47.826 0.00 0.00 0.00 2.90
831 4163 4.014273 AGATCTTTCCCCACCAGATAGT 57.986 45.455 0.00 0.00 0.00 2.12
832 4164 3.713764 AGATCTTTCCCCACCAGATAGTG 59.286 47.826 0.00 0.00 37.51 2.74
834 4166 4.069312 TCTTTCCCCACCAGATAGTGTA 57.931 45.455 0.00 0.00 35.93 2.90
836 4168 3.484953 TTCCCCACCAGATAGTGTAGT 57.515 47.619 0.00 0.00 35.93 2.73
837 4169 4.613265 TTCCCCACCAGATAGTGTAGTA 57.387 45.455 0.00 0.00 35.93 1.82
897 6015 4.881019 AGTCAACAGCACTAGATTGTCT 57.119 40.909 0.00 0.00 0.00 3.41
898 6016 4.815269 AGTCAACAGCACTAGATTGTCTC 58.185 43.478 0.00 0.00 0.00 3.36
900 6018 5.011533 AGTCAACAGCACTAGATTGTCTCTT 59.988 40.000 0.00 0.00 35.28 2.85
904 6022 5.020132 ACAGCACTAGATTGTCTCTTACCT 58.980 41.667 0.00 0.00 35.28 3.08
909 6027 6.568869 CACTAGATTGTCTCTTACCTTCCAG 58.431 44.000 0.00 0.00 35.28 3.86
910 6028 6.153680 CACTAGATTGTCTCTTACCTTCCAGT 59.846 42.308 0.00 0.00 35.28 4.00
911 6029 5.669164 AGATTGTCTCTTACCTTCCAGTC 57.331 43.478 0.00 0.00 0.00 3.51
962 6109 3.755628 GACCAGCCGACGGTAGCA 61.756 66.667 16.73 0.00 36.69 3.49
1016 6163 2.273370 TTCATGGTAAGCGACGACTC 57.727 50.000 0.00 0.00 0.00 3.36
1017 6164 1.460504 TCATGGTAAGCGACGACTCT 58.539 50.000 0.00 0.00 0.00 3.24
1038 6185 4.030452 GCAACTCCGCAGCACCAC 62.030 66.667 0.00 0.00 0.00 4.16
1105 6253 2.562635 CTCTGCCTGTCCATGAATCAG 58.437 52.381 0.00 0.00 0.00 2.90
1117 6265 4.831710 TCCATGAATCAGTCAGAGATCGAT 59.168 41.667 0.00 0.00 40.43 3.59
1127 6275 0.829333 AGAGATCGATGCACCAAGCT 59.171 50.000 0.54 0.00 45.94 3.74
1131 6279 2.131183 GATCGATGCACCAAGCTAGAC 58.869 52.381 0.54 0.00 45.94 2.59
1155 6303 2.183555 CTACCGGCCGTGAACTCC 59.816 66.667 26.12 0.00 0.00 3.85
1297 7606 2.716398 GGTGTTCGACAGCAAAAGAAC 58.284 47.619 10.83 7.79 45.26 3.01
1298 7607 2.354821 GGTGTTCGACAGCAAAAGAACT 59.645 45.455 13.48 0.00 45.26 3.01
1299 7608 3.558418 GGTGTTCGACAGCAAAAGAACTA 59.442 43.478 13.48 2.08 45.26 2.24
1300 7609 4.515432 GTGTTCGACAGCAAAAGAACTAC 58.485 43.478 13.48 8.31 42.29 2.73
1301 7610 3.558418 TGTTCGACAGCAAAAGAACTACC 59.442 43.478 13.48 0.00 42.29 3.18
1302 7611 3.462483 TCGACAGCAAAAGAACTACCA 57.538 42.857 0.00 0.00 0.00 3.25
1303 7612 3.128349 TCGACAGCAAAAGAACTACCAC 58.872 45.455 0.00 0.00 0.00 4.16
1304 7613 3.131396 CGACAGCAAAAGAACTACCACT 58.869 45.455 0.00 0.00 0.00 4.00
1305 7614 4.038282 TCGACAGCAAAAGAACTACCACTA 59.962 41.667 0.00 0.00 0.00 2.74
1306 7615 4.929808 CGACAGCAAAAGAACTACCACTAT 59.070 41.667 0.00 0.00 0.00 2.12
1307 7616 5.408604 CGACAGCAAAAGAACTACCACTATT 59.591 40.000 0.00 0.00 0.00 1.73
1308 7617 6.560253 ACAGCAAAAGAACTACCACTATTG 57.440 37.500 0.00 0.00 0.00 1.90
1348 7657 0.249953 TTTTGAGCTTACGCACCCGA 60.250 50.000 0.00 0.00 39.10 5.14
1349 7658 0.669318 TTTGAGCTTACGCACCCGAG 60.669 55.000 0.00 0.00 39.10 4.63
1352 7661 2.508663 GCTTACGCACCCGAGTCC 60.509 66.667 0.00 0.00 38.29 3.85
1353 7662 3.003113 GCTTACGCACCCGAGTCCT 62.003 63.158 0.00 0.00 38.29 3.85
1363 7672 0.478942 CCCGAGTCCTCCTATCCTGA 59.521 60.000 0.00 0.00 0.00 3.86
1367 7676 3.876309 GAGTCCTCCTATCCTGACTCT 57.124 52.381 10.41 0.00 46.43 3.24
1377 7686 1.942776 TCCTGACTCTTGGCTCATGA 58.057 50.000 0.00 0.00 0.00 3.07
1380 7689 2.619147 CTGACTCTTGGCTCATGACAG 58.381 52.381 0.00 0.00 29.87 3.51
1388 7697 1.550524 TGGCTCATGACAGTGTACCTC 59.449 52.381 0.00 0.00 0.00 3.85
1390 7699 1.472878 GCTCATGACAGTGTACCTCGA 59.527 52.381 0.00 0.00 0.00 4.04
1391 7700 2.478709 GCTCATGACAGTGTACCTCGAG 60.479 54.545 5.13 5.13 0.00 4.04
1430 7745 3.589988 CTGCTGTTCTGAACCGATTACT 58.410 45.455 17.26 0.00 0.00 2.24
1437 7752 2.037902 TCTGAACCGATTACTGTGGCAA 59.962 45.455 0.00 0.00 0.00 4.52
1451 7766 2.427453 TGTGGCAAAATGTGTTACGGTT 59.573 40.909 0.00 0.00 0.00 4.44
1473 7788 2.277373 GTCTCGTAGGCTCGCGTG 60.277 66.667 5.77 4.44 0.00 5.34
1491 7816 2.695359 GTGTGGGTTCTAATCGAGCAA 58.305 47.619 0.00 0.00 0.00 3.91
1609 10352 0.660488 CATCTCCTCCTCGACTCGTG 59.340 60.000 0.00 0.00 0.00 4.35
1611 10354 1.747367 CTCCTCCTCGACTCGTGCT 60.747 63.158 0.00 0.00 0.00 4.40
1622 10365 0.892755 ACTCGTGCTATGGGAAACGA 59.107 50.000 0.00 0.00 42.30 3.85
1636 10379 2.193447 GAAACGACATAGCATCTCGCA 58.807 47.619 0.00 0.00 46.13 5.10
1719 10659 6.594159 CCTTCCTGTTTCGAGCTTATCTAAAA 59.406 38.462 0.00 0.00 0.00 1.52
1730 10670 6.136541 AGCTTATCTAAAATTTTCGCCTGG 57.863 37.500 6.72 0.00 0.00 4.45
1731 10671 4.740205 GCTTATCTAAAATTTTCGCCTGGC 59.260 41.667 9.11 9.11 0.00 4.85
1756 10703 0.739112 CTTCCTCCTCGCAGCTTCAC 60.739 60.000 0.00 0.00 0.00 3.18
1771 10724 0.607217 TTCACTGTGATGGCTGCCTG 60.607 55.000 21.03 7.88 0.00 4.85
1783 10736 0.465824 GCTGCCTGAGATGCCAGATT 60.466 55.000 0.00 0.00 36.29 2.40
1786 10739 0.822532 GCCTGAGATGCCAGATTGGG 60.823 60.000 0.00 0.00 38.19 4.12
1803 10756 4.021925 GGACAGCCTGCCGAGGTT 62.022 66.667 0.00 0.00 42.15 3.50
1817 10770 1.735700 CGAGGTTCAAGCGCTACATGA 60.736 52.381 12.05 8.57 0.00 3.07
1828 10781 2.905075 CGCTACATGATGGTCAAAGGA 58.095 47.619 0.00 0.00 0.00 3.36
1832 10785 4.383552 GCTACATGATGGTCAAAGGAGAGT 60.384 45.833 0.00 0.00 0.00 3.24
1844 10797 0.539901 AGGAGAGTGCGTGTACCTGT 60.540 55.000 0.00 0.00 0.00 4.00
1845 10798 0.109226 GGAGAGTGCGTGTACCTGTC 60.109 60.000 0.00 0.00 0.00 3.51
1884 11021 2.589442 TGGGACAACGCCAACGAC 60.589 61.111 0.00 0.00 44.16 4.34
1888 11025 1.484232 GACAACGCCAACGACGTAC 59.516 57.895 0.00 0.00 44.30 3.67
1889 11026 1.879562 GACAACGCCAACGACGTACC 61.880 60.000 0.00 0.00 44.30 3.34
1891 11028 1.662446 AACGCCAACGACGTACCAG 60.662 57.895 0.00 0.00 44.30 4.00
1892 11029 2.807895 CGCCAACGACGTACCAGG 60.808 66.667 0.00 2.55 43.93 4.45
1894 11031 1.735559 GCCAACGACGTACCAGGAC 60.736 63.158 0.00 0.00 0.00 3.85
1895 11032 1.661480 CCAACGACGTACCAGGACA 59.339 57.895 0.00 0.00 0.00 4.02
1896 11033 0.245539 CCAACGACGTACCAGGACAT 59.754 55.000 0.00 0.00 0.00 3.06
1897 11034 1.346365 CAACGACGTACCAGGACATG 58.654 55.000 0.00 0.00 0.00 3.21
1921 11058 3.257561 CCGATCTGAACGGCAGCG 61.258 66.667 13.47 2.60 44.52 5.18
1945 11082 2.511600 GCCGTGATTCCGTGGGAG 60.512 66.667 0.00 0.00 31.21 4.30
1960 11097 2.134287 GGAGCTGGAGGTGCCGATA 61.134 63.158 0.00 0.00 40.66 2.92
1985 11122 2.048222 TGCTTCCTCGTCAAGGCG 60.048 61.111 0.00 0.00 45.78 5.52
2008 11145 3.431673 AGAAGAAAGGGAGAAAGCCAG 57.568 47.619 0.00 0.00 0.00 4.85
2135 11291 1.078143 AGATCGTGCCTGGGAAAGC 60.078 57.895 0.00 0.00 0.00 3.51
2314 11481 1.071699 AGTACATGACACGGCTTTGGT 59.928 47.619 0.00 0.00 0.00 3.67
2384 11551 2.093921 CCCAAAACAAAACACGGACCTT 60.094 45.455 0.00 0.00 0.00 3.50
2463 11636 9.772973 TGTAGTTTGAAACAGTACATGTAGATT 57.227 29.630 11.02 0.00 43.00 2.40
2563 11744 2.371841 ACAGTGCCCTGAGTATGAACAA 59.628 45.455 2.19 0.00 41.50 2.83
2627 11808 4.581868 TGTAATCCCCTGGAAAAGTAACG 58.418 43.478 0.00 0.00 34.34 3.18
2691 11872 1.486310 AGCATGGACGCTCAGGATAAA 59.514 47.619 0.00 0.00 37.91 1.40
2781 11971 3.198489 GTGCTTGAGCTAGCCCGC 61.198 66.667 12.13 9.51 40.49 6.13
2793 11983 4.500116 GCCCGCTCCGACACTCTC 62.500 72.222 0.00 0.00 0.00 3.20
2805 11995 2.608261 CGACACTCTCTTGTCCCAACTC 60.608 54.545 0.00 0.00 42.63 3.01
2806 11996 1.694696 ACACTCTCTTGTCCCAACTCC 59.305 52.381 0.00 0.00 0.00 3.85
2847 12037 0.896923 GATGCCCAAATCTGTGCCAA 59.103 50.000 0.00 0.00 0.00 4.52
2848 12038 1.483415 GATGCCCAAATCTGTGCCAAT 59.517 47.619 0.00 0.00 0.00 3.16
3033 12249 3.846955 GGCAACCTTACGAGCCTAA 57.153 52.632 0.00 0.00 43.70 2.69
3083 12299 1.726853 CTCACGAACCCTTGACATCC 58.273 55.000 0.00 0.00 0.00 3.51
3098 12314 0.468029 CATCCCCCATGCCCTTGTAC 60.468 60.000 0.00 0.00 0.00 2.90
3104 12320 2.094675 CCCATGCCCTTGTACTTCTTG 58.905 52.381 0.00 0.00 0.00 3.02
3107 12323 0.605319 TGCCCTTGTACTTCTTGCCG 60.605 55.000 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.449698 TCAAAAATCTGCCAATCAAGTCTTC 58.550 36.000 0.00 0.00 0.00 2.87
30 31 9.206870 GATTTTGTTAATCTCAAAAATCTGCCA 57.793 29.630 10.82 0.00 44.24 4.92
41 42 9.462174 GTGTTTGTGATGATTTTGTTAATCTCA 57.538 29.630 0.00 0.00 0.00 3.27
42 43 9.683069 AGTGTTTGTGATGATTTTGTTAATCTC 57.317 29.630 0.00 0.00 0.00 2.75
63 64 4.330944 TGACCGTCTGTTATGAAGTGTT 57.669 40.909 0.00 0.00 0.00 3.32
68 69 4.529109 TGACATGACCGTCTGTTATGAA 57.471 40.909 0.00 0.00 42.09 2.57
130 131 7.239271 CGAGTTAAGTGTTAGACTTATCACGA 58.761 38.462 17.90 0.00 44.82 4.35
135 136 6.372659 TCGTCCGAGTTAAGTGTTAGACTTAT 59.627 38.462 2.82 0.00 44.89 1.73
158 159 3.849911 TCTTCATGCTAGAACCAACTCG 58.150 45.455 0.00 0.00 0.00 4.18
302 303 9.596308 TTAGAGCCTTCATATATACACCAAGTA 57.404 33.333 0.00 0.00 37.06 2.24
371 372 6.260493 CCAAATGTTCCATGTTGATGTTTGTT 59.740 34.615 0.00 0.00 0.00 2.83
385 386 8.670135 CAAATAGTACGTAATCCAAATGTTCCA 58.330 33.333 0.00 0.00 0.00 3.53
448 1556 5.163854 CGGGCATGTTTTCTAGTAAGACTTG 60.164 44.000 0.00 0.00 0.00 3.16
458 1566 0.604243 ACGCACGGGCATGTTTTCTA 60.604 50.000 11.77 0.00 41.24 2.10
461 1569 1.299773 CAACGCACGGGCATGTTTT 60.300 52.632 11.77 0.00 41.24 2.43
462 1570 2.334653 CAACGCACGGGCATGTTT 59.665 55.556 11.77 0.00 41.24 2.83
465 1573 4.340019 TTGCAACGCACGGGCATG 62.340 61.111 11.77 9.58 38.71 4.06
466 1574 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
476 1584 3.489416 GGATTGTTTTTCTCCGTTGCAAC 59.511 43.478 19.89 19.89 0.00 4.17
477 1585 3.131223 TGGATTGTTTTTCTCCGTTGCAA 59.869 39.130 0.00 0.00 31.36 4.08
478 1586 2.690497 TGGATTGTTTTTCTCCGTTGCA 59.310 40.909 0.00 0.00 31.36 4.08
479 1587 3.363341 TGGATTGTTTTTCTCCGTTGC 57.637 42.857 0.00 0.00 31.36 4.17
480 1588 5.572896 GCTTATGGATTGTTTTTCTCCGTTG 59.427 40.000 0.00 0.00 30.94 4.10
481 1589 5.619086 CGCTTATGGATTGTTTTTCTCCGTT 60.619 40.000 0.00 0.00 30.94 4.44
484 1592 4.157840 ACCGCTTATGGATTGTTTTTCTCC 59.842 41.667 0.00 0.00 0.00 3.71
485 1593 5.310720 ACCGCTTATGGATTGTTTTTCTC 57.689 39.130 0.00 0.00 0.00 2.87
486 1594 5.722021 AACCGCTTATGGATTGTTTTTCT 57.278 34.783 0.00 0.00 0.00 2.52
487 1595 6.617879 AGTAACCGCTTATGGATTGTTTTTC 58.382 36.000 0.00 0.00 0.00 2.29
488 1596 6.433093 AGAGTAACCGCTTATGGATTGTTTTT 59.567 34.615 0.00 0.00 0.00 1.94
490 1598 5.497474 AGAGTAACCGCTTATGGATTGTTT 58.503 37.500 0.00 0.00 0.00 2.83
493 1601 3.736252 CGAGAGTAACCGCTTATGGATTG 59.264 47.826 0.00 0.00 0.00 2.67
494 1602 3.243771 CCGAGAGTAACCGCTTATGGATT 60.244 47.826 0.00 0.00 0.00 3.01
496 1604 1.679680 CCGAGAGTAACCGCTTATGGA 59.320 52.381 0.00 0.00 0.00 3.41
497 1605 1.269621 CCCGAGAGTAACCGCTTATGG 60.270 57.143 0.00 0.00 0.00 2.74
498 1606 1.407979 ACCCGAGAGTAACCGCTTATG 59.592 52.381 0.00 0.00 0.00 1.90
499 1607 1.772836 ACCCGAGAGTAACCGCTTAT 58.227 50.000 0.00 0.00 0.00 1.73
502 1610 0.683412 AAAACCCGAGAGTAACCGCT 59.317 50.000 0.00 0.00 0.00 5.52
504 1612 1.718396 GGAAAACCCGAGAGTAACCG 58.282 55.000 0.00 0.00 0.00 4.44
516 1624 3.987868 GGAATTCTCAAAAGCGGAAAACC 59.012 43.478 5.23 0.00 0.00 3.27
517 1625 4.616953 TGGAATTCTCAAAAGCGGAAAAC 58.383 39.130 5.23 0.00 0.00 2.43
520 1628 5.391523 CGTAATGGAATTCTCAAAAGCGGAA 60.392 40.000 5.23 0.00 37.87 4.30
521 1629 4.094294 CGTAATGGAATTCTCAAAAGCGGA 59.906 41.667 5.23 0.00 37.87 5.54
522 1630 4.342772 CGTAATGGAATTCTCAAAAGCGG 58.657 43.478 5.23 0.00 37.87 5.52
526 1634 9.116067 CCTAATACCGTAATGGAATTCTCAAAA 57.884 33.333 5.23 0.00 42.00 2.44
527 1635 8.487848 TCCTAATACCGTAATGGAATTCTCAAA 58.512 33.333 5.23 0.00 42.00 2.69
528 1636 8.025270 TCCTAATACCGTAATGGAATTCTCAA 57.975 34.615 5.23 0.00 42.00 3.02
529 1637 7.606135 TCCTAATACCGTAATGGAATTCTCA 57.394 36.000 5.23 2.28 42.00 3.27
530 1638 8.936864 CAATCCTAATACCGTAATGGAATTCTC 58.063 37.037 5.23 0.00 42.00 2.87
531 1639 8.656806 TCAATCCTAATACCGTAATGGAATTCT 58.343 33.333 5.23 0.00 42.00 2.40
532 1640 8.842358 TCAATCCTAATACCGTAATGGAATTC 57.158 34.615 0.00 0.00 42.00 2.17
533 1641 9.063615 GTTCAATCCTAATACCGTAATGGAATT 57.936 33.333 0.00 0.00 42.00 2.17
534 1642 7.386848 CGTTCAATCCTAATACCGTAATGGAAT 59.613 37.037 0.00 0.00 42.00 3.01
535 1643 6.702723 CGTTCAATCCTAATACCGTAATGGAA 59.297 38.462 0.00 0.00 42.00 3.53
536 1644 6.040729 TCGTTCAATCCTAATACCGTAATGGA 59.959 38.462 0.00 0.00 42.00 3.41
537 1645 6.218019 TCGTTCAATCCTAATACCGTAATGG 58.782 40.000 0.00 0.00 46.41 3.16
538 1646 7.813148 AGATCGTTCAATCCTAATACCGTAATG 59.187 37.037 0.00 0.00 0.00 1.90
539 1647 7.813148 CAGATCGTTCAATCCTAATACCGTAAT 59.187 37.037 0.00 0.00 0.00 1.89
540 1648 7.143340 CAGATCGTTCAATCCTAATACCGTAA 58.857 38.462 0.00 0.00 0.00 3.18
541 1649 6.675026 CAGATCGTTCAATCCTAATACCGTA 58.325 40.000 0.00 0.00 0.00 4.02
542 1650 5.529791 CAGATCGTTCAATCCTAATACCGT 58.470 41.667 0.00 0.00 0.00 4.83
543 1651 4.386049 GCAGATCGTTCAATCCTAATACCG 59.614 45.833 0.00 0.00 0.00 4.02
544 1652 5.542779 AGCAGATCGTTCAATCCTAATACC 58.457 41.667 0.00 0.00 0.00 2.73
545 1653 5.343593 CGAGCAGATCGTTCAATCCTAATAC 59.656 44.000 0.00 0.00 46.62 1.89
546 1654 5.461526 CGAGCAGATCGTTCAATCCTAATA 58.538 41.667 0.00 0.00 46.62 0.98
547 1655 4.302455 CGAGCAGATCGTTCAATCCTAAT 58.698 43.478 0.00 0.00 46.62 1.73
548 1656 3.706698 CGAGCAGATCGTTCAATCCTAA 58.293 45.455 0.00 0.00 46.62 2.69
549 1657 3.355626 CGAGCAGATCGTTCAATCCTA 57.644 47.619 0.00 0.00 46.62 2.94
550 1658 2.215907 CGAGCAGATCGTTCAATCCT 57.784 50.000 0.00 0.00 46.62 3.24
560 1668 2.826428 TGATTACAAGCCGAGCAGATC 58.174 47.619 0.00 0.00 0.00 2.75
561 1669 2.988010 TGATTACAAGCCGAGCAGAT 57.012 45.000 0.00 0.00 0.00 2.90
562 1670 2.988010 ATGATTACAAGCCGAGCAGA 57.012 45.000 0.00 0.00 0.00 4.26
563 1671 3.002042 CAGAATGATTACAAGCCGAGCAG 59.998 47.826 0.00 0.00 39.69 4.24
564 1672 2.938451 CAGAATGATTACAAGCCGAGCA 59.062 45.455 0.00 0.00 39.69 4.26
565 1673 2.289002 CCAGAATGATTACAAGCCGAGC 59.711 50.000 0.00 0.00 39.69 5.03
566 1674 3.797039 TCCAGAATGATTACAAGCCGAG 58.203 45.455 0.00 0.00 39.69 4.63
567 1675 3.904800 TCCAGAATGATTACAAGCCGA 57.095 42.857 0.00 0.00 39.69 5.54
568 1676 5.505173 AATTCCAGAATGATTACAAGCCG 57.495 39.130 0.00 0.00 39.69 5.52
569 1677 6.866480 TGAAATTCCAGAATGATTACAAGCC 58.134 36.000 0.00 0.00 39.69 4.35
570 1678 8.192774 TGATGAAATTCCAGAATGATTACAAGC 58.807 33.333 0.00 0.00 39.69 4.01
573 1681 8.635328 CCATGATGAAATTCCAGAATGATTACA 58.365 33.333 0.00 0.00 39.69 2.41
574 1682 8.636213 ACCATGATGAAATTCCAGAATGATTAC 58.364 33.333 0.00 0.00 39.69 1.89
575 1683 8.771521 ACCATGATGAAATTCCAGAATGATTA 57.228 30.769 0.00 0.00 39.69 1.75
576 1684 7.670605 ACCATGATGAAATTCCAGAATGATT 57.329 32.000 0.00 0.00 39.69 2.57
577 1685 8.951614 ATACCATGATGAAATTCCAGAATGAT 57.048 30.769 0.00 0.00 39.69 2.45
578 1686 8.000127 TGATACCATGATGAAATTCCAGAATGA 59.000 33.333 0.00 0.00 39.69 2.57
579 1687 8.173542 TGATACCATGATGAAATTCCAGAATG 57.826 34.615 0.00 0.00 0.00 2.67
580 1688 8.003044 ACTGATACCATGATGAAATTCCAGAAT 58.997 33.333 0.00 0.00 0.00 2.40
581 1689 7.348815 ACTGATACCATGATGAAATTCCAGAA 58.651 34.615 0.00 0.00 0.00 3.02
582 1690 6.903516 ACTGATACCATGATGAAATTCCAGA 58.096 36.000 0.00 0.00 0.00 3.86
583 1691 8.681486 TTACTGATACCATGATGAAATTCCAG 57.319 34.615 0.00 0.00 0.00 3.86
584 1692 9.070179 CATTACTGATACCATGATGAAATTCCA 57.930 33.333 0.00 0.00 0.00 3.53
585 1693 9.288576 TCATTACTGATACCATGATGAAATTCC 57.711 33.333 0.00 0.00 0.00 3.01
588 1696 8.777413 CGTTCATTACTGATACCATGATGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
589 1697 7.984617 TCGTTCATTACTGATACCATGATGAAA 59.015 33.333 0.00 0.00 0.00 2.69
590 1698 7.496747 TCGTTCATTACTGATACCATGATGAA 58.503 34.615 0.00 0.00 0.00 2.57
591 1699 7.049799 TCGTTCATTACTGATACCATGATGA 57.950 36.000 0.00 0.00 0.00 2.92
592 1700 7.063898 GGATCGTTCATTACTGATACCATGATG 59.936 40.741 0.00 0.00 0.00 3.07
593 1701 7.099764 GGATCGTTCATTACTGATACCATGAT 58.900 38.462 0.00 0.00 0.00 2.45
594 1702 6.041523 TGGATCGTTCATTACTGATACCATGA 59.958 38.462 0.00 0.00 0.00 3.07
595 1703 6.146184 GTGGATCGTTCATTACTGATACCATG 59.854 42.308 0.00 0.00 30.46 3.66
596 1704 6.042093 AGTGGATCGTTCATTACTGATACCAT 59.958 38.462 0.00 0.00 30.46 3.55
597 1705 5.362717 AGTGGATCGTTCATTACTGATACCA 59.637 40.000 0.00 0.00 0.00 3.25
598 1706 5.844004 AGTGGATCGTTCATTACTGATACC 58.156 41.667 0.00 0.00 0.00 2.73
599 1707 6.201044 CCAAGTGGATCGTTCATTACTGATAC 59.799 42.308 0.00 0.00 37.39 2.24
600 1708 6.280643 CCAAGTGGATCGTTCATTACTGATA 58.719 40.000 0.00 0.00 37.39 2.15
601 1709 5.118990 CCAAGTGGATCGTTCATTACTGAT 58.881 41.667 0.00 0.00 37.39 2.90
602 1710 4.503910 CCAAGTGGATCGTTCATTACTGA 58.496 43.478 0.00 0.00 37.39 3.41
603 1711 3.063997 GCCAAGTGGATCGTTCATTACTG 59.936 47.826 0.18 0.00 37.39 2.74
604 1712 3.055094 AGCCAAGTGGATCGTTCATTACT 60.055 43.478 0.18 0.00 37.39 2.24
605 1713 3.063997 CAGCCAAGTGGATCGTTCATTAC 59.936 47.826 0.18 0.00 37.39 1.89
606 1714 3.055458 TCAGCCAAGTGGATCGTTCATTA 60.055 43.478 0.18 0.00 37.39 1.90
607 1715 2.086869 CAGCCAAGTGGATCGTTCATT 58.913 47.619 0.18 0.00 37.39 2.57
608 1716 1.278985 TCAGCCAAGTGGATCGTTCAT 59.721 47.619 0.18 0.00 37.39 2.57
609 1717 0.684535 TCAGCCAAGTGGATCGTTCA 59.315 50.000 0.18 0.00 37.39 3.18
610 1718 1.936547 GATCAGCCAAGTGGATCGTTC 59.063 52.381 0.18 0.00 37.39 3.95
611 1719 1.278985 TGATCAGCCAAGTGGATCGTT 59.721 47.619 0.18 0.00 40.17 3.85
612 1720 0.904649 TGATCAGCCAAGTGGATCGT 59.095 50.000 0.18 0.00 40.17 3.73
613 1721 1.938577 CTTGATCAGCCAAGTGGATCG 59.061 52.381 0.18 0.00 40.17 3.69
614 1722 2.092753 TCCTTGATCAGCCAAGTGGATC 60.093 50.000 0.18 0.00 41.34 3.36
615 1723 1.918262 TCCTTGATCAGCCAAGTGGAT 59.082 47.619 0.18 0.00 41.34 3.41
616 1724 1.361204 TCCTTGATCAGCCAAGTGGA 58.639 50.000 0.18 0.00 41.34 4.02
617 1725 2.205022 TTCCTTGATCAGCCAAGTGG 57.795 50.000 0.00 0.00 41.34 4.00
618 1726 3.349927 TGATTCCTTGATCAGCCAAGTG 58.650 45.455 0.00 0.00 41.34 3.16
619 1727 3.726557 TGATTCCTTGATCAGCCAAGT 57.273 42.857 0.00 0.00 41.34 3.16
630 1738 2.892852 TCTGGTTGGCTTTGATTCCTTG 59.107 45.455 0.00 0.00 0.00 3.61
631 1739 3.160269 CTCTGGTTGGCTTTGATTCCTT 58.840 45.455 0.00 0.00 0.00 3.36
634 1742 3.416156 AGTCTCTGGTTGGCTTTGATTC 58.584 45.455 0.00 0.00 0.00 2.52
636 1744 3.584848 ACTAGTCTCTGGTTGGCTTTGAT 59.415 43.478 0.00 0.00 0.00 2.57
638 1746 3.409026 ACTAGTCTCTGGTTGGCTTTG 57.591 47.619 0.00 0.00 0.00 2.77
639 1747 4.347000 TGTTACTAGTCTCTGGTTGGCTTT 59.653 41.667 0.00 0.00 0.00 3.51
640 1748 3.901844 TGTTACTAGTCTCTGGTTGGCTT 59.098 43.478 0.00 0.00 0.00 4.35
641 1749 3.258622 GTGTTACTAGTCTCTGGTTGGCT 59.741 47.826 0.00 0.00 0.00 4.75
644 1752 5.009710 TGTGAGTGTTACTAGTCTCTGGTTG 59.990 44.000 0.00 0.00 0.00 3.77
647 1755 5.009710 TGTTGTGAGTGTTACTAGTCTCTGG 59.990 44.000 0.00 0.00 0.00 3.86
656 1992 9.698309 GCTCATATATATGTTGTGAGTGTTACT 57.302 33.333 19.78 0.00 38.75 2.24
659 1995 8.962884 TTGCTCATATATATGTTGTGAGTGTT 57.037 30.769 19.78 0.00 38.75 3.32
663 1999 9.390795 GCTTTTTGCTCATATATATGTTGTGAG 57.609 33.333 19.78 12.68 39.35 3.51
681 2017 4.735338 GTGTGTCTAGTTGAAGCTTTTTGC 59.265 41.667 0.00 0.00 43.29 3.68
682 2018 5.879237 TGTGTGTCTAGTTGAAGCTTTTTG 58.121 37.500 0.00 0.00 0.00 2.44
683 2019 5.880332 TCTGTGTGTCTAGTTGAAGCTTTTT 59.120 36.000 0.00 0.00 0.00 1.94
684 2020 5.428253 TCTGTGTGTCTAGTTGAAGCTTTT 58.572 37.500 0.00 0.00 0.00 2.27
685 2021 5.023533 TCTGTGTGTCTAGTTGAAGCTTT 57.976 39.130 0.00 0.00 0.00 3.51
686 2022 4.672587 TCTGTGTGTCTAGTTGAAGCTT 57.327 40.909 0.00 0.00 0.00 3.74
687 2023 4.672587 TTCTGTGTGTCTAGTTGAAGCT 57.327 40.909 0.00 0.00 0.00 3.74
688 2024 5.050490 TCTTTCTGTGTGTCTAGTTGAAGC 58.950 41.667 0.00 0.00 0.00 3.86
689 2025 7.543868 CCTATCTTTCTGTGTGTCTAGTTGAAG 59.456 40.741 0.00 0.00 0.00 3.02
690 2026 7.378966 CCTATCTTTCTGTGTGTCTAGTTGAA 58.621 38.462 0.00 0.00 0.00 2.69
692 2171 6.102663 CCCTATCTTTCTGTGTGTCTAGTTG 58.897 44.000 0.00 0.00 0.00 3.16
697 2176 3.521727 ACCCCTATCTTTCTGTGTGTCT 58.478 45.455 0.00 0.00 0.00 3.41
699 2178 4.724279 AAACCCCTATCTTTCTGTGTGT 57.276 40.909 0.00 0.00 0.00 3.72
704 2183 8.290325 GCGAAATTATAAACCCCTATCTTTCTG 58.710 37.037 0.00 0.00 0.00 3.02
706 2185 7.447545 AGGCGAAATTATAAACCCCTATCTTTC 59.552 37.037 0.00 0.00 0.00 2.62
709 2188 6.449830 AGGCGAAATTATAAACCCCTATCT 57.550 37.500 0.00 0.00 0.00 1.98
711 2190 5.516062 GGGAGGCGAAATTATAAACCCCTAT 60.516 44.000 0.00 0.00 0.00 2.57
714 2193 2.889045 GGGAGGCGAAATTATAAACCCC 59.111 50.000 0.00 0.00 0.00 4.95
721 2200 6.039382 GTGAATAAGTTGGGAGGCGAAATTAT 59.961 38.462 0.00 0.00 0.00 1.28
722 2201 5.355910 GTGAATAAGTTGGGAGGCGAAATTA 59.644 40.000 0.00 0.00 0.00 1.40
726 2205 2.617021 GGTGAATAAGTTGGGAGGCGAA 60.617 50.000 0.00 0.00 0.00 4.70
728 2207 1.065418 AGGTGAATAAGTTGGGAGGCG 60.065 52.381 0.00 0.00 0.00 5.52
729 2208 2.026262 TCAGGTGAATAAGTTGGGAGGC 60.026 50.000 0.00 0.00 0.00 4.70
730 2209 4.010349 GTTCAGGTGAATAAGTTGGGAGG 58.990 47.826 0.00 0.00 36.33 4.30
732 2211 4.104102 ACTGTTCAGGTGAATAAGTTGGGA 59.896 41.667 4.82 0.00 36.33 4.37
744 2735 3.738982 TGTTGGTATCACTGTTCAGGTG 58.261 45.455 4.82 0.00 36.17 4.00
746 2737 7.630242 ATTATTGTTGGTATCACTGTTCAGG 57.370 36.000 4.82 0.00 0.00 3.86
747 2738 9.988350 GTTATTATTGTTGGTATCACTGTTCAG 57.012 33.333 0.00 0.00 0.00 3.02
762 3196 9.671279 TGTGAGTGATCATGAGTTATTATTGTT 57.329 29.630 0.00 0.00 0.00 2.83
765 3199 9.499479 GGATGTGAGTGATCATGAGTTATTATT 57.501 33.333 0.00 0.00 0.00 1.40
768 3202 6.892485 TGGATGTGAGTGATCATGAGTTATT 58.108 36.000 0.00 0.00 0.00 1.40
770 3204 5.937975 TGGATGTGAGTGATCATGAGTTA 57.062 39.130 0.00 0.00 0.00 2.24
771 3205 4.831674 TGGATGTGAGTGATCATGAGTT 57.168 40.909 0.00 0.00 0.00 3.01
772 3206 4.224594 AGTTGGATGTGAGTGATCATGAGT 59.775 41.667 0.00 0.00 0.00 3.41
773 3207 4.571176 CAGTTGGATGTGAGTGATCATGAG 59.429 45.833 0.00 0.00 0.00 2.90
775 3209 3.626217 CCAGTTGGATGTGAGTGATCATG 59.374 47.826 0.00 0.00 37.39 3.07
790 3911 7.619050 AGATCTAAGCACATATATCCAGTTGG 58.381 38.462 0.00 0.00 0.00 3.77
799 4131 6.239887 GGTGGGGAAAGATCTAAGCACATATA 60.240 42.308 0.00 0.00 0.00 0.86
800 4132 5.456763 GGTGGGGAAAGATCTAAGCACATAT 60.457 44.000 0.00 0.00 0.00 1.78
802 4134 3.372025 GGTGGGGAAAGATCTAAGCACAT 60.372 47.826 0.00 0.00 0.00 3.21
813 4145 2.915869 ACACTATCTGGTGGGGAAAGA 58.084 47.619 0.00 0.00 41.09 2.52
815 4147 3.798515 ACTACACTATCTGGTGGGGAAA 58.201 45.455 0.00 0.00 41.09 3.13
821 4153 4.634883 AGACACGTACTACACTATCTGGTG 59.365 45.833 0.00 0.00 42.34 4.17
828 4160 2.161012 GCTGCAGACACGTACTACACTA 59.839 50.000 20.43 0.00 0.00 2.74
831 4163 1.244816 AGCTGCAGACACGTACTACA 58.755 50.000 20.43 0.00 0.00 2.74
832 4164 1.986378 CAAGCTGCAGACACGTACTAC 59.014 52.381 20.43 0.00 0.00 2.73
834 4166 0.946221 GCAAGCTGCAGACACGTACT 60.946 55.000 20.43 0.00 44.26 2.73
836 4168 3.951332 GCAAGCTGCAGACACGTA 58.049 55.556 20.43 0.00 44.26 3.57
897 6015 3.596956 AGTAGAGGGACTGGAAGGTAAGA 59.403 47.826 0.00 0.00 41.55 2.10
898 6016 3.702045 CAGTAGAGGGACTGGAAGGTAAG 59.298 52.174 0.00 0.00 42.68 2.34
900 6018 2.623502 GCAGTAGAGGGACTGGAAGGTA 60.624 54.545 5.76 0.00 45.85 3.08
904 6022 3.468071 TTAGCAGTAGAGGGACTGGAA 57.532 47.619 5.76 0.00 45.85 3.53
962 6109 0.830444 TCGGTGCACCAGTTACCTCT 60.830 55.000 34.16 0.00 35.14 3.69
1016 6163 1.374631 TGCTGCGGAGTTGCTGTAG 60.375 57.895 5.62 0.00 38.49 2.74
1017 6164 1.667830 GTGCTGCGGAGTTGCTGTA 60.668 57.895 5.62 0.00 36.33 2.74
1038 6185 4.188462 TGTTCAGTACACAAGTGACAAGG 58.812 43.478 7.28 0.00 37.27 3.61
1105 6253 2.200067 CTTGGTGCATCGATCTCTGAC 58.800 52.381 0.00 0.00 0.00 3.51
1117 6265 2.432456 CGCGTCTAGCTTGGTGCA 60.432 61.111 0.00 0.00 45.94 4.57
1127 6275 3.884350 CCGGTAGCAGCGCGTCTA 61.884 66.667 8.43 4.51 37.85 2.59
1215 6363 4.242336 TCCTCTCTACTTCTCATGCTCA 57.758 45.455 0.00 0.00 0.00 4.26
1278 7587 3.675467 AGTTCTTTTGCTGTCGAACAC 57.325 42.857 0.00 0.00 38.50 3.32
1301 7610 5.722263 TGCATTCCATGAAAACCAATAGTG 58.278 37.500 0.00 0.00 0.00 2.74
1302 7611 5.716228 TCTGCATTCCATGAAAACCAATAGT 59.284 36.000 0.00 0.00 0.00 2.12
1303 7612 6.211587 TCTGCATTCCATGAAAACCAATAG 57.788 37.500 0.00 0.00 0.00 1.73
1304 7613 6.795144 ATCTGCATTCCATGAAAACCAATA 57.205 33.333 0.00 0.00 0.00 1.90
1305 7614 5.687166 ATCTGCATTCCATGAAAACCAAT 57.313 34.783 0.00 0.00 0.00 3.16
1306 7615 5.486735 AATCTGCATTCCATGAAAACCAA 57.513 34.783 0.00 0.00 0.00 3.67
1307 7616 5.486735 AAATCTGCATTCCATGAAAACCA 57.513 34.783 0.00 0.00 0.00 3.67
1308 7617 6.806388 AAAAATCTGCATTCCATGAAAACC 57.194 33.333 0.00 0.00 0.00 3.27
1340 7649 1.797211 GATAGGAGGACTCGGGTGCG 61.797 65.000 0.00 0.00 38.85 5.34
1348 7657 3.373658 CCAAGAGTCAGGATAGGAGGACT 60.374 52.174 0.00 0.00 42.90 3.85
1349 7658 2.962421 CCAAGAGTCAGGATAGGAGGAC 59.038 54.545 0.00 0.00 0.00 3.85
1352 7661 2.627699 GAGCCAAGAGTCAGGATAGGAG 59.372 54.545 5.87 0.00 0.00 3.69
1353 7662 2.023984 TGAGCCAAGAGTCAGGATAGGA 60.024 50.000 5.87 0.00 0.00 2.94
1363 7672 1.696336 ACACTGTCATGAGCCAAGAGT 59.304 47.619 0.00 0.00 0.00 3.24
1367 7676 1.977854 AGGTACACTGTCATGAGCCAA 59.022 47.619 0.00 0.00 0.00 4.52
1377 7686 1.202582 GTGCATCTCGAGGTACACTGT 59.797 52.381 19.80 0.00 0.00 3.55
1380 7689 1.914634 CTGTGCATCTCGAGGTACAC 58.085 55.000 20.19 20.19 33.15 2.90
1388 7697 1.284657 CCTAACTGCTGTGCATCTCG 58.715 55.000 0.00 0.00 38.13 4.04
1390 7699 0.393537 GGCCTAACTGCTGTGCATCT 60.394 55.000 0.00 0.00 38.13 2.90
1391 7700 0.393537 AGGCCTAACTGCTGTGCATC 60.394 55.000 1.29 0.00 38.13 3.91
1430 7745 2.025155 ACCGTAACACATTTTGCCACA 58.975 42.857 0.00 0.00 0.00 4.17
1437 7752 2.292292 GACCAGCAACCGTAACACATTT 59.708 45.455 0.00 0.00 0.00 2.32
1451 7766 2.407428 CGAGCCTACGAGACCAGCA 61.407 63.158 0.00 0.00 35.09 4.41
1473 7788 2.678336 CCTTTGCTCGATTAGAACCCAC 59.322 50.000 0.00 0.00 0.00 4.61
1491 7816 4.718961 AGAACAAACATACACAGAGCCTT 58.281 39.130 0.00 0.00 0.00 4.35
1504 7829 2.828520 TGGTGGCAGAAAAGAACAAACA 59.171 40.909 0.00 0.00 0.00 2.83
1557 7882 0.110486 TGGGAGGAAGTGTTTCTGCC 59.890 55.000 0.00 0.00 42.28 4.85
1611 10354 4.558697 CGAGATGCTATGTCGTTTCCCATA 60.559 45.833 7.28 0.00 40.68 2.74
1622 10365 1.592669 GCCGTGCGAGATGCTATGT 60.593 57.895 0.00 0.00 46.63 2.29
1666 10416 0.038709 TACATGTTGCAAAAGCGGGC 60.039 50.000 2.30 0.00 0.00 6.13
1719 10659 0.329596 AGAGAAGGCCAGGCGAAAAT 59.670 50.000 5.01 0.00 0.00 1.82
1730 10670 1.142965 GCGAGGAGGAAGAGAAGGC 59.857 63.158 0.00 0.00 0.00 4.35
1731 10671 0.459489 CTGCGAGGAGGAAGAGAAGG 59.541 60.000 0.00 0.00 0.00 3.46
1756 10703 0.180642 ATCTCAGGCAGCCATCACAG 59.819 55.000 15.80 1.40 0.00 3.66
1758 10711 1.445716 GCATCTCAGGCAGCCATCAC 61.446 60.000 15.80 0.00 0.00 3.06
1771 10724 0.548031 TGTCCCCAATCTGGCATCTC 59.452 55.000 0.00 0.00 35.79 2.75
1786 10739 3.959991 GAACCTCGGCAGGCTGTCC 62.960 68.421 14.46 14.98 45.05 4.02
1803 10756 1.206849 TGACCATCATGTAGCGCTTGA 59.793 47.619 18.68 14.91 36.01 3.02
1817 10770 0.687354 ACGCACTCTCCTTTGACCAT 59.313 50.000 0.00 0.00 0.00 3.55
1828 10781 1.067565 CATGACAGGTACACGCACTCT 60.068 52.381 0.00 0.00 0.00 3.24
1832 10785 1.790755 GTTCATGACAGGTACACGCA 58.209 50.000 0.00 0.00 0.00 5.24
1844 10797 2.617308 GGATCCTCGTAGTCGTTCATGA 59.383 50.000 3.84 0.00 38.33 3.07
1845 10798 2.357952 TGGATCCTCGTAGTCGTTCATG 59.642 50.000 14.23 0.00 38.33 3.07
1904 11041 3.257561 CGCTGCCGTTCAGATCGG 61.258 66.667 14.69 14.69 45.72 4.18
1924 11061 4.147322 CACGGAATCACGGCGTGC 62.147 66.667 33.59 20.13 38.39 5.34
1945 11082 0.886490 CCAATATCGGCACCTCCAGC 60.886 60.000 0.00 0.00 34.01 4.85
1960 11097 2.821366 CGAGGAAGCAGCGCCAAT 60.821 61.111 2.29 0.00 0.00 3.16
1965 11102 3.468007 CTTGACGAGGAAGCAGCG 58.532 61.111 0.00 0.00 0.00 5.18
1985 11122 4.145052 TGGCTTTCTCCCTTTCTTCTTTC 58.855 43.478 0.00 0.00 0.00 2.62
2008 11145 1.515521 CCACGGAAGAAGCCAACACC 61.516 60.000 0.00 0.00 0.00 4.16
2039 11176 3.319405 ACTGAACTGAGTGAAGTCGTCAT 59.681 43.478 0.00 0.00 38.90 3.06
2178 11334 3.269592 TCTCCCTCAGGTGAACCTTAA 57.730 47.619 0.00 0.00 46.09 1.85
2179 11335 3.269592 TTCTCCCTCAGGTGAACCTTA 57.730 47.619 0.00 0.00 46.09 2.69
2188 11344 2.317149 GACCGGCATTCTCCCTCAGG 62.317 65.000 0.00 0.00 0.00 3.86
2304 11471 0.667993 CATGTGTGAACCAAAGCCGT 59.332 50.000 0.00 0.00 0.00 5.68
2384 11551 6.969828 TGTAATTTGTATGCGTCATGTACA 57.030 33.333 0.00 0.00 0.00 2.90
2463 11636 2.717044 CCCGGCGTACTCACATGGA 61.717 63.158 6.01 0.00 0.00 3.41
2627 11808 1.510844 CGTAAAATGCCACTGCCCC 59.489 57.895 0.00 0.00 36.33 5.80
2691 11872 1.979619 GCTTATGCACCCCGGTACCT 61.980 60.000 10.90 0.00 39.41 3.08
2805 11995 2.260844 TTCTTGAGTGTGAGCTTGGG 57.739 50.000 0.00 0.00 0.00 4.12
2806 11996 3.057736 CCAATTCTTGAGTGTGAGCTTGG 60.058 47.826 0.00 0.00 0.00 3.61
2848 12038 9.730705 AGTGTTTTCATTCTGAGATATTTCTGA 57.269 29.630 0.00 0.00 30.30 3.27
2908 12111 9.162764 GGAGCATTGTTCTGAACTTAATAGTAA 57.837 33.333 20.18 5.30 33.17 2.24
2911 12114 7.414540 GGTGGAGCATTGTTCTGAACTTAATAG 60.415 40.741 20.18 9.25 0.00 1.73
2913 12116 5.183904 GGTGGAGCATTGTTCTGAACTTAAT 59.816 40.000 20.18 10.46 0.00 1.40
2914 12117 4.518970 GGTGGAGCATTGTTCTGAACTTAA 59.481 41.667 20.18 8.66 0.00 1.85
2915 12118 4.072131 GGTGGAGCATTGTTCTGAACTTA 58.928 43.478 20.18 9.68 0.00 2.24
2916 12119 2.887152 GGTGGAGCATTGTTCTGAACTT 59.113 45.455 20.18 6.44 0.00 2.66
2918 12121 1.541588 GGGTGGAGCATTGTTCTGAAC 59.458 52.381 13.49 13.49 0.00 3.18
2919 12122 1.425066 AGGGTGGAGCATTGTTCTGAA 59.575 47.619 0.37 0.00 0.00 3.02
2920 12123 1.003580 GAGGGTGGAGCATTGTTCTGA 59.996 52.381 0.37 0.00 0.00 3.27
3074 12290 1.456331 GGGCATGGGGGATGTCAAG 60.456 63.158 0.00 0.00 38.56 3.02
3083 12299 0.625849 AGAAGTACAAGGGCATGGGG 59.374 55.000 0.00 0.00 0.00 4.96
3098 12314 1.002544 GGGGATCCTATCGGCAAGAAG 59.997 57.143 12.58 0.00 0.00 2.85
3104 12320 1.984020 GGAAGGGGATCCTATCGGC 59.016 63.158 12.58 0.00 44.07 5.54
3112 12328 1.281925 TGGCTGGAAGGAAGGGGATC 61.282 60.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.