Multiple sequence alignment - TraesCS4A01G051800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G051800 chr4A 100.000 3446 0 0 1 3446 42773990 42777435 0.000000e+00 6364.0
1 TraesCS4A01G051800 chr5A 97.939 1407 27 2 1609 3014 452243847 452245252 0.000000e+00 2436.0
2 TraesCS4A01G051800 chr5A 86.026 1374 169 16 1649 3014 634170599 634169241 0.000000e+00 1452.0
3 TraesCS4A01G051800 chr5A 97.331 637 17 0 957 1593 452241653 452242289 0.000000e+00 1083.0
4 TraesCS4A01G051800 chr7A 96.735 1409 44 2 1609 3016 207884096 207885503 0.000000e+00 2346.0
5 TraesCS4A01G051800 chr7A 99.041 938 8 1 23 959 357348219 357349156 0.000000e+00 1681.0
6 TraesCS4A01G051800 chr7A 89.065 1198 108 18 1831 3017 287613569 287614754 0.000000e+00 1465.0
7 TraesCS4A01G051800 chr7A 96.703 637 21 0 957 1593 207881965 207882601 0.000000e+00 1061.0
8 TraesCS4A01G051800 chr7A 95.447 637 29 0 957 1593 287611471 287612107 0.000000e+00 1016.0
9 TraesCS4A01G051800 chr7A 95.312 640 30 0 957 1596 660201479 660200840 0.000000e+00 1016.0
10 TraesCS4A01G051800 chr7A 85.333 75 10 1 1766 1840 207884047 207884120 3.690000e-10 76.8
11 TraesCS4A01G051800 chr6A 99.147 938 6 2 23 959 386109244 386108308 0.000000e+00 1687.0
12 TraesCS4A01G051800 chr5B 99.251 934 7 0 28 961 89809621 89810554 0.000000e+00 1687.0
13 TraesCS4A01G051800 chr5B 88.862 1221 116 17 1798 3011 486696873 486698080 0.000000e+00 1483.0
14 TraesCS4A01G051800 chr4B 99.460 926 5 0 34 959 322670124 322671049 0.000000e+00 1683.0
15 TraesCS4A01G051800 chr4B 92.343 431 30 2 3017 3446 518156298 518155870 8.180000e-171 610.0
16 TraesCS4A01G051800 chr4B 91.584 404 32 2 1609 2011 498949673 498950075 1.080000e-154 556.0
17 TraesCS4A01G051800 chr3A 99.459 925 5 0 35 959 46614454 46613530 0.000000e+00 1681.0
18 TraesCS4A01G051800 chr2B 99.039 937 9 0 23 959 676549593 676548657 0.000000e+00 1681.0
19 TraesCS4A01G051800 chr2B 88.917 1191 111 17 1836 3017 25339574 25338396 0.000000e+00 1448.0
20 TraesCS4A01G051800 chr2B 88.648 1198 113 18 1831 3017 457195106 457196291 0.000000e+00 1437.0
21 TraesCS4A01G051800 chr2B 95.781 640 27 0 957 1596 25341798 25341159 0.000000e+00 1033.0
22 TraesCS4A01G051800 chr2B 95.761 637 27 0 957 1593 457193010 457193646 0.000000e+00 1027.0
23 TraesCS4A01G051800 chr1A 99.143 933 7 1 28 959 22087959 22087027 0.000000e+00 1677.0
24 TraesCS4A01G051800 chr3B 99.038 936 6 2 25 959 695915020 695915953 0.000000e+00 1676.0
25 TraesCS4A01G051800 chr3B 99.035 933 9 0 27 959 224957070 224958002 0.000000e+00 1674.0
26 TraesCS4A01G051800 chr3B 85.714 1393 169 24 1645 3025 656603249 656601875 0.000000e+00 1443.0
27 TraesCS4A01G051800 chr3B 95.008 641 29 2 958 1596 656605076 656604437 0.000000e+00 1003.0
28 TraesCS4A01G051800 chr1B 88.619 1195 113 18 1831 3014 573062527 573063709 0.000000e+00 1432.0
29 TraesCS4A01G051800 chr2A 95.938 640 26 0 957 1596 728782475 728781836 0.000000e+00 1038.0
30 TraesCS4A01G051800 chr2A 95.761 637 27 0 957 1593 748226310 748226946 0.000000e+00 1027.0
31 TraesCS4A01G051800 chr2A 97.024 504 14 1 1651 2154 752737891 752737389 0.000000e+00 846.0
32 TraesCS4A01G051800 chr4D 93.318 434 26 2 3014 3446 421340638 421340207 3.750000e-179 638.0
33 TraesCS4A01G051800 chr4D 92.147 382 25 4 1601 1980 402829484 402829862 5.060000e-148 534.0
34 TraesCS4A01G051800 chr1D 80.734 109 17 4 3340 3446 39956719 39956613 7.930000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G051800 chr4A 42773990 42777435 3445 False 6364.000000 6364 100.000000 1 3446 1 chr4A.!!$F1 3445
1 TraesCS4A01G051800 chr5A 452241653 452245252 3599 False 1759.500000 2436 97.635000 957 3014 2 chr5A.!!$F1 2057
2 TraesCS4A01G051800 chr5A 634169241 634170599 1358 True 1452.000000 1452 86.026000 1649 3014 1 chr5A.!!$R1 1365
3 TraesCS4A01G051800 chr7A 357348219 357349156 937 False 1681.000000 1681 99.041000 23 959 1 chr7A.!!$F1 936
4 TraesCS4A01G051800 chr7A 287611471 287614754 3283 False 1240.500000 1465 92.256000 957 3017 2 chr7A.!!$F3 2060
5 TraesCS4A01G051800 chr7A 207881965 207885503 3538 False 1161.266667 2346 92.923667 957 3016 3 chr7A.!!$F2 2059
6 TraesCS4A01G051800 chr7A 660200840 660201479 639 True 1016.000000 1016 95.312000 957 1596 1 chr7A.!!$R1 639
7 TraesCS4A01G051800 chr6A 386108308 386109244 936 True 1687.000000 1687 99.147000 23 959 1 chr6A.!!$R1 936
8 TraesCS4A01G051800 chr5B 89809621 89810554 933 False 1687.000000 1687 99.251000 28 961 1 chr5B.!!$F1 933
9 TraesCS4A01G051800 chr5B 486696873 486698080 1207 False 1483.000000 1483 88.862000 1798 3011 1 chr5B.!!$F2 1213
10 TraesCS4A01G051800 chr4B 322670124 322671049 925 False 1683.000000 1683 99.460000 34 959 1 chr4B.!!$F1 925
11 TraesCS4A01G051800 chr3A 46613530 46614454 924 True 1681.000000 1681 99.459000 35 959 1 chr3A.!!$R1 924
12 TraesCS4A01G051800 chr2B 676548657 676549593 936 True 1681.000000 1681 99.039000 23 959 1 chr2B.!!$R1 936
13 TraesCS4A01G051800 chr2B 25338396 25341798 3402 True 1240.500000 1448 92.349000 957 3017 2 chr2B.!!$R2 2060
14 TraesCS4A01G051800 chr2B 457193010 457196291 3281 False 1232.000000 1437 92.204500 957 3017 2 chr2B.!!$F1 2060
15 TraesCS4A01G051800 chr1A 22087027 22087959 932 True 1677.000000 1677 99.143000 28 959 1 chr1A.!!$R1 931
16 TraesCS4A01G051800 chr3B 695915020 695915953 933 False 1676.000000 1676 99.038000 25 959 1 chr3B.!!$F2 934
17 TraesCS4A01G051800 chr3B 224957070 224958002 932 False 1674.000000 1674 99.035000 27 959 1 chr3B.!!$F1 932
18 TraesCS4A01G051800 chr3B 656601875 656605076 3201 True 1223.000000 1443 90.361000 958 3025 2 chr3B.!!$R1 2067
19 TraesCS4A01G051800 chr1B 573062527 573063709 1182 False 1432.000000 1432 88.619000 1831 3014 1 chr1B.!!$F1 1183
20 TraesCS4A01G051800 chr2A 728781836 728782475 639 True 1038.000000 1038 95.938000 957 1596 1 chr2A.!!$R1 639
21 TraesCS4A01G051800 chr2A 748226310 748226946 636 False 1027.000000 1027 95.761000 957 1593 1 chr2A.!!$F1 636
22 TraesCS4A01G051800 chr2A 752737389 752737891 502 True 846.000000 846 97.024000 1651 2154 1 chr2A.!!$R2 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 286 1.618343 TCTCTTGACATTCTCCGCACA 59.382 47.619 0.00 0.0 0.0 4.57 F
1598 1603 0.319728 CACCGGATATGGAGCCTCAG 59.680 60.000 9.46 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 3926 0.881118 TTGCGCAACCTCCTCATTTC 59.119 50.0 21.02 0.0 0.00 2.17 R
2977 4809 0.988678 AGGGACAGATTAGGGTGGCC 60.989 60.0 0.00 0.0 41.76 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
283 286 1.618343 TCTCTTGACATTCTCCGCACA 59.382 47.619 0.00 0.00 0.00 4.57
551 554 3.443045 GGTCGAACCGCCGTCCTA 61.443 66.667 0.00 0.00 35.44 2.94
963 966 4.133078 GACCTCATCCATCACCAAAGATC 58.867 47.826 0.00 0.00 0.00 2.75
1036 1039 7.548780 TGGTTGTTCAATCCAGAAAAAGAAAAG 59.451 33.333 0.00 0.00 0.00 2.27
1152 1155 2.224744 TGTGAACATGCTTAGGCTTGGA 60.225 45.455 15.69 0.00 44.59 3.53
1241 1244 6.425114 CACTTGACTATTGAGCAACAAGTAGT 59.575 38.462 13.23 5.63 40.03 2.73
1593 1598 2.364324 TCAGTTACACCGGATATGGAGC 59.636 50.000 9.46 0.00 0.00 4.70
1596 1601 1.629043 TACACCGGATATGGAGCCTC 58.371 55.000 9.46 0.00 0.00 4.70
1597 1602 0.398522 ACACCGGATATGGAGCCTCA 60.399 55.000 9.46 0.00 0.00 3.86
1598 1603 0.319728 CACCGGATATGGAGCCTCAG 59.680 60.000 9.46 0.00 0.00 3.35
1601 1606 2.248248 CCGGATATGGAGCCTCAGTTA 58.752 52.381 0.00 0.00 0.00 2.24
1604 1609 3.553096 CGGATATGGAGCCTCAGTTACAC 60.553 52.174 0.00 0.00 0.00 2.90
1605 1610 3.388024 GGATATGGAGCCTCAGTTACACA 59.612 47.826 0.00 0.00 0.00 3.72
1606 1611 4.040952 GGATATGGAGCCTCAGTTACACAT 59.959 45.833 0.00 0.00 0.00 3.21
1607 1612 2.768253 TGGAGCCTCAGTTACACATG 57.232 50.000 0.00 0.00 0.00 3.21
1617 3302 5.178252 CCTCAGTTACACATGTGTTTCTCTG 59.822 44.000 34.66 29.82 41.83 3.35
1671 3356 3.174375 GCTGGAAATCGTTTCTTCATGC 58.826 45.455 9.34 0.00 39.59 4.06
1738 3423 9.399797 TGATGTACATCTTTCTTTTATGCTGAT 57.600 29.630 30.67 0.00 38.60 2.90
2099 3926 2.268076 CCAAGAAACCCACTGCCCG 61.268 63.158 0.00 0.00 0.00 6.13
2548 4375 5.698832 TGATTAACTCTTTTGATGCAACCG 58.301 37.500 0.00 0.00 0.00 4.44
2555 4382 3.320541 TCTTTTGATGCAACCGGACAATT 59.679 39.130 9.46 0.00 0.00 2.32
2824 4654 6.605594 TCTCAAGTCAAAAAGGTTACCACAAT 59.394 34.615 3.51 0.00 0.00 2.71
2977 4809 3.704231 CTGGTTGGGGATGCCCTCG 62.704 68.421 24.41 3.29 44.66 4.63
3017 4849 5.070001 CCTCAAACCAAACACATCCTTAGA 58.930 41.667 0.00 0.00 0.00 2.10
3021 4853 7.841956 TCAAACCAAACACATCCTTAGAAAAA 58.158 30.769 0.00 0.00 0.00 1.94
3025 4857 5.691754 CCAAACACATCCTTAGAAAAACTGC 59.308 40.000 0.00 0.00 0.00 4.40
3026 4858 6.272318 CAAACACATCCTTAGAAAAACTGCA 58.728 36.000 0.00 0.00 0.00 4.41
3027 4859 6.463995 AACACATCCTTAGAAAAACTGCAA 57.536 33.333 0.00 0.00 0.00 4.08
3028 4860 6.463995 ACACATCCTTAGAAAAACTGCAAA 57.536 33.333 0.00 0.00 0.00 3.68
3029 4861 7.054491 ACACATCCTTAGAAAAACTGCAAAT 57.946 32.000 0.00 0.00 0.00 2.32
3030 4862 6.925165 ACACATCCTTAGAAAAACTGCAAATG 59.075 34.615 0.00 0.00 0.00 2.32
3031 4863 7.147312 CACATCCTTAGAAAAACTGCAAATGA 58.853 34.615 0.00 0.00 0.00 2.57
3032 4864 7.652909 CACATCCTTAGAAAAACTGCAAATGAA 59.347 33.333 0.00 0.00 0.00 2.57
3033 4865 8.370182 ACATCCTTAGAAAAACTGCAAATGAAT 58.630 29.630 0.00 0.00 0.00 2.57
3034 4866 9.211485 CATCCTTAGAAAAACTGCAAATGAATT 57.789 29.630 0.00 0.00 0.00 2.17
3035 4867 8.816640 TCCTTAGAAAAACTGCAAATGAATTC 57.183 30.769 0.00 0.00 0.00 2.17
3036 4868 8.420222 TCCTTAGAAAAACTGCAAATGAATTCA 58.580 29.630 11.26 11.26 0.00 2.57
3037 4869 9.044150 CCTTAGAAAAACTGCAAATGAATTCAA 57.956 29.630 13.09 0.00 0.00 2.69
3041 4873 8.400186 AGAAAAACTGCAAATGAATTCAAAAGG 58.600 29.630 13.09 3.98 0.00 3.11
3042 4874 7.628769 AAAACTGCAAATGAATTCAAAAGGT 57.371 28.000 13.09 1.85 0.00 3.50
3043 4875 7.628769 AAACTGCAAATGAATTCAAAAGGTT 57.371 28.000 13.09 7.77 0.00 3.50
3044 4876 6.607735 ACTGCAAATGAATTCAAAAGGTTG 57.392 33.333 13.09 12.16 35.95 3.77
3045 4877 5.528320 ACTGCAAATGAATTCAAAAGGTTGG 59.472 36.000 13.09 0.41 35.29 3.77
3046 4878 5.678583 TGCAAATGAATTCAAAAGGTTGGA 58.321 33.333 13.09 10.03 35.29 3.53
3047 4879 6.297582 TGCAAATGAATTCAAAAGGTTGGAT 58.702 32.000 13.09 0.00 34.09 3.41
3048 4880 6.771749 TGCAAATGAATTCAAAAGGTTGGATT 59.228 30.769 13.09 0.00 44.32 3.01
3049 4881 7.935755 TGCAAATGAATTCAAAAGGTTGGATTA 59.064 29.630 13.09 0.00 42.12 1.75
3050 4882 8.782144 GCAAATGAATTCAAAAGGTTGGATTAA 58.218 29.630 13.09 0.00 42.12 1.40
3053 4885 9.844257 AATGAATTCAAAAGGTTGGATTAAACA 57.156 25.926 13.09 0.00 42.12 2.83
3077 4909 9.965824 ACATAAAATCCTCTAAACAACAAAGTG 57.034 29.630 0.00 0.00 0.00 3.16
3078 4910 8.915654 CATAAAATCCTCTAAACAACAAAGTGC 58.084 33.333 0.00 0.00 0.00 4.40
3079 4911 6.463995 AAATCCTCTAAACAACAAAGTGCA 57.536 33.333 0.00 0.00 0.00 4.57
3080 4912 6.463995 AATCCTCTAAACAACAAAGTGCAA 57.536 33.333 0.00 0.00 0.00 4.08
3081 4913 5.499139 TCCTCTAAACAACAAAGTGCAAG 57.501 39.130 0.00 0.00 0.00 4.01
3082 4914 4.044426 CCTCTAAACAACAAAGTGCAAGC 58.956 43.478 0.00 0.00 0.00 4.01
3083 4915 4.439974 CCTCTAAACAACAAAGTGCAAGCA 60.440 41.667 0.00 0.00 0.00 3.91
3084 4916 5.065704 TCTAAACAACAAAGTGCAAGCAA 57.934 34.783 0.00 0.00 0.00 3.91
3085 4917 5.101628 TCTAAACAACAAAGTGCAAGCAAG 58.898 37.500 0.00 0.00 0.00 4.01
3086 4918 3.317603 AACAACAAAGTGCAAGCAAGT 57.682 38.095 0.00 0.00 0.00 3.16
3087 4919 3.317603 ACAACAAAGTGCAAGCAAGTT 57.682 38.095 0.00 0.00 0.00 2.66
3088 4920 3.253230 ACAACAAAGTGCAAGCAAGTTC 58.747 40.909 0.00 0.00 0.00 3.01
3089 4921 3.056607 ACAACAAAGTGCAAGCAAGTTCT 60.057 39.130 0.00 0.00 0.00 3.01
3090 4922 3.874392 ACAAAGTGCAAGCAAGTTCTT 57.126 38.095 0.00 0.00 0.00 2.52
3091 4923 4.981806 ACAAAGTGCAAGCAAGTTCTTA 57.018 36.364 0.00 0.00 0.00 2.10
3092 4924 4.672409 ACAAAGTGCAAGCAAGTTCTTAC 58.328 39.130 0.00 0.00 0.00 2.34
3093 4925 4.157656 ACAAAGTGCAAGCAAGTTCTTACA 59.842 37.500 0.00 0.00 0.00 2.41
3094 4926 4.981806 AAGTGCAAGCAAGTTCTTACAA 57.018 36.364 0.00 0.00 0.00 2.41
3095 4927 4.558538 AGTGCAAGCAAGTTCTTACAAG 57.441 40.909 0.00 0.00 0.00 3.16
3096 4928 3.045688 GTGCAAGCAAGTTCTTACAAGC 58.954 45.455 0.00 0.00 0.00 4.01
3097 4929 2.951642 TGCAAGCAAGTTCTTACAAGCT 59.048 40.909 0.00 0.00 37.99 3.74
3098 4930 3.243168 TGCAAGCAAGTTCTTACAAGCTG 60.243 43.478 0.00 0.00 36.95 4.24
3099 4931 3.303406 CAAGCAAGTTCTTACAAGCTGC 58.697 45.455 0.00 0.00 36.95 5.25
3100 4932 2.575532 AGCAAGTTCTTACAAGCTGCA 58.424 42.857 1.02 0.00 35.97 4.41
3101 4933 3.152341 AGCAAGTTCTTACAAGCTGCAT 58.848 40.909 1.02 0.00 35.97 3.96
3102 4934 3.571401 AGCAAGTTCTTACAAGCTGCATT 59.429 39.130 1.02 0.00 35.97 3.56
3103 4935 4.038402 AGCAAGTTCTTACAAGCTGCATTT 59.962 37.500 1.02 0.00 35.97 2.32
3104 4936 5.241506 AGCAAGTTCTTACAAGCTGCATTTA 59.758 36.000 1.02 0.00 35.97 1.40
3105 4937 6.071728 AGCAAGTTCTTACAAGCTGCATTTAT 60.072 34.615 1.02 0.00 35.97 1.40
3106 4938 7.121168 AGCAAGTTCTTACAAGCTGCATTTATA 59.879 33.333 1.02 0.00 35.97 0.98
3107 4939 7.218963 GCAAGTTCTTACAAGCTGCATTTATAC 59.781 37.037 1.02 0.00 0.00 1.47
3108 4940 7.921786 AGTTCTTACAAGCTGCATTTATACA 57.078 32.000 1.02 0.00 0.00 2.29
3109 4941 8.335532 AGTTCTTACAAGCTGCATTTATACAA 57.664 30.769 1.02 0.00 0.00 2.41
3110 4942 8.792633 AGTTCTTACAAGCTGCATTTATACAAA 58.207 29.630 1.02 0.00 0.00 2.83
3111 4943 9.573133 GTTCTTACAAGCTGCATTTATACAAAT 57.427 29.630 1.02 0.00 34.60 2.32
3112 4944 9.787532 TTCTTACAAGCTGCATTTATACAAATC 57.212 29.630 1.02 0.00 31.82 2.17
3113 4945 8.122330 TCTTACAAGCTGCATTTATACAAATCG 58.878 33.333 1.02 0.00 31.82 3.34
3114 4946 6.435430 ACAAGCTGCATTTATACAAATCGA 57.565 33.333 1.02 0.00 31.82 3.59
3115 4947 6.489675 ACAAGCTGCATTTATACAAATCGAG 58.510 36.000 1.02 0.00 31.82 4.04
3116 4948 5.679734 AGCTGCATTTATACAAATCGAGG 57.320 39.130 1.02 0.00 31.82 4.63
3117 4949 5.368145 AGCTGCATTTATACAAATCGAGGA 58.632 37.500 1.02 0.00 31.82 3.71
3118 4950 5.822519 AGCTGCATTTATACAAATCGAGGAA 59.177 36.000 1.02 0.00 31.82 3.36
3119 4951 5.909610 GCTGCATTTATACAAATCGAGGAAC 59.090 40.000 0.00 0.00 31.82 3.62
3120 4952 6.371809 TGCATTTATACAAATCGAGGAACC 57.628 37.500 0.00 0.00 31.82 3.62
3121 4953 5.298276 TGCATTTATACAAATCGAGGAACCC 59.702 40.000 0.00 0.00 31.82 4.11
3122 4954 5.278315 GCATTTATACAAATCGAGGAACCCC 60.278 44.000 0.00 0.00 31.82 4.95
3123 4955 5.438698 TTTATACAAATCGAGGAACCCCA 57.561 39.130 0.00 0.00 33.88 4.96
3124 4956 5.438698 TTATACAAATCGAGGAACCCCAA 57.561 39.130 0.00 0.00 33.88 4.12
3125 4957 2.668144 ACAAATCGAGGAACCCCAAA 57.332 45.000 0.00 0.00 33.88 3.28
3126 4958 3.169512 ACAAATCGAGGAACCCCAAAT 57.830 42.857 0.00 0.00 33.88 2.32
3127 4959 4.310022 ACAAATCGAGGAACCCCAAATA 57.690 40.909 0.00 0.00 33.88 1.40
3128 4960 4.668636 ACAAATCGAGGAACCCCAAATAA 58.331 39.130 0.00 0.00 33.88 1.40
3129 4961 5.269189 ACAAATCGAGGAACCCCAAATAAT 58.731 37.500 0.00 0.00 33.88 1.28
3130 4962 5.719563 ACAAATCGAGGAACCCCAAATAATT 59.280 36.000 0.00 0.00 33.88 1.40
3131 4963 6.893005 ACAAATCGAGGAACCCCAAATAATTA 59.107 34.615 0.00 0.00 33.88 1.40
3132 4964 7.563556 ACAAATCGAGGAACCCCAAATAATTAT 59.436 33.333 0.00 0.00 33.88 1.28
3133 4965 8.421002 CAAATCGAGGAACCCCAAATAATTATT 58.579 33.333 4.81 4.81 33.88 1.40
3134 4966 8.547481 AATCGAGGAACCCCAAATAATTATTT 57.453 30.769 16.15 16.15 36.39 1.40
3135 4967 9.649316 AATCGAGGAACCCCAAATAATTATTTA 57.351 29.630 20.32 4.13 34.36 1.40
3136 4968 9.822727 ATCGAGGAACCCCAAATAATTATTTAT 57.177 29.630 20.32 6.02 34.36 1.40
3137 4969 9.649316 TCGAGGAACCCCAAATAATTATTTATT 57.351 29.630 20.32 13.25 39.23 1.40
3160 4992 8.601845 ATTTTAAAAGTACAAACATGAAGGGC 57.398 30.769 6.79 0.00 0.00 5.19
3161 4993 4.600692 AAAAGTACAAACATGAAGGGCC 57.399 40.909 0.00 0.00 0.00 5.80
3162 4994 3.525800 AAGTACAAACATGAAGGGCCT 57.474 42.857 0.00 0.00 0.00 5.19
3163 4995 4.650972 AAGTACAAACATGAAGGGCCTA 57.349 40.909 6.41 0.00 0.00 3.93
3164 4996 4.862641 AGTACAAACATGAAGGGCCTAT 57.137 40.909 6.41 0.00 0.00 2.57
3165 4997 5.193099 AGTACAAACATGAAGGGCCTATT 57.807 39.130 6.41 0.00 0.00 1.73
3166 4998 5.580022 AGTACAAACATGAAGGGCCTATTT 58.420 37.500 6.41 0.00 0.00 1.40
3167 4999 4.806640 ACAAACATGAAGGGCCTATTTG 57.193 40.909 6.41 14.76 0.00 2.32
3168 5000 4.415596 ACAAACATGAAGGGCCTATTTGA 58.584 39.130 23.01 0.57 31.59 2.69
3169 5001 5.025453 ACAAACATGAAGGGCCTATTTGAT 58.975 37.500 23.01 9.25 31.59 2.57
3170 5002 5.484998 ACAAACATGAAGGGCCTATTTGATT 59.515 36.000 23.01 13.34 31.59 2.57
3171 5003 5.859205 AACATGAAGGGCCTATTTGATTC 57.141 39.130 6.41 0.00 0.00 2.52
3172 5004 4.870636 ACATGAAGGGCCTATTTGATTCA 58.129 39.130 6.41 5.19 0.00 2.57
3173 5005 5.461327 ACATGAAGGGCCTATTTGATTCAT 58.539 37.500 6.41 7.73 37.76 2.57
3174 5006 6.613699 ACATGAAGGGCCTATTTGATTCATA 58.386 36.000 6.41 0.00 35.73 2.15
3175 5007 7.068702 ACATGAAGGGCCTATTTGATTCATAA 58.931 34.615 6.41 0.00 35.73 1.90
3176 5008 7.731688 ACATGAAGGGCCTATTTGATTCATAAT 59.268 33.333 6.41 0.00 35.73 1.28
3177 5009 9.246670 CATGAAGGGCCTATTTGATTCATAATA 57.753 33.333 6.41 0.00 35.73 0.98
3178 5010 9.827198 ATGAAGGGCCTATTTGATTCATAATAA 57.173 29.630 6.41 0.00 36.04 1.40
3179 5011 9.827198 TGAAGGGCCTATTTGATTCATAATAAT 57.173 29.630 6.41 0.00 0.00 1.28
3209 5041 9.793259 AAGAAACAAGAATATGTAAGAAGTGGA 57.207 29.630 0.00 0.00 32.02 4.02
3210 5042 9.442047 AGAAACAAGAATATGTAAGAAGTGGAG 57.558 33.333 0.00 0.00 32.02 3.86
3211 5043 8.567285 AAACAAGAATATGTAAGAAGTGGAGG 57.433 34.615 0.00 0.00 32.02 4.30
3212 5044 7.496346 ACAAGAATATGTAAGAAGTGGAGGA 57.504 36.000 0.00 0.00 0.00 3.71
3213 5045 8.095452 ACAAGAATATGTAAGAAGTGGAGGAT 57.905 34.615 0.00 0.00 0.00 3.24
3214 5046 8.552296 ACAAGAATATGTAAGAAGTGGAGGATT 58.448 33.333 0.00 0.00 0.00 3.01
3217 5049 9.661954 AGAATATGTAAGAAGTGGAGGATTAGA 57.338 33.333 0.00 0.00 0.00 2.10
3218 5050 9.921637 GAATATGTAAGAAGTGGAGGATTAGAG 57.078 37.037 0.00 0.00 0.00 2.43
3219 5051 9.440761 AATATGTAAGAAGTGGAGGATTAGAGT 57.559 33.333 0.00 0.00 0.00 3.24
3220 5052 6.531503 TGTAAGAAGTGGAGGATTAGAGTG 57.468 41.667 0.00 0.00 0.00 3.51
3221 5053 6.017192 TGTAAGAAGTGGAGGATTAGAGTGT 58.983 40.000 0.00 0.00 0.00 3.55
3222 5054 5.669164 AAGAAGTGGAGGATTAGAGTGTC 57.331 43.478 0.00 0.00 0.00 3.67
3223 5055 4.678256 AGAAGTGGAGGATTAGAGTGTCA 58.322 43.478 0.00 0.00 0.00 3.58
3224 5056 5.276440 AGAAGTGGAGGATTAGAGTGTCAT 58.724 41.667 0.00 0.00 0.00 3.06
3225 5057 5.362430 AGAAGTGGAGGATTAGAGTGTCATC 59.638 44.000 0.00 0.00 0.00 2.92
3226 5058 4.877773 AGTGGAGGATTAGAGTGTCATCT 58.122 43.478 0.00 0.00 0.00 2.90
3227 5059 4.892934 AGTGGAGGATTAGAGTGTCATCTC 59.107 45.833 0.00 0.00 34.96 2.75
3228 5060 4.646945 GTGGAGGATTAGAGTGTCATCTCA 59.353 45.833 5.57 0.00 36.97 3.27
3229 5061 5.127845 GTGGAGGATTAGAGTGTCATCTCAA 59.872 44.000 5.57 0.00 36.97 3.02
3230 5062 5.127845 TGGAGGATTAGAGTGTCATCTCAAC 59.872 44.000 5.57 0.00 36.97 3.18
3231 5063 5.362430 GGAGGATTAGAGTGTCATCTCAACT 59.638 44.000 5.57 0.00 36.97 3.16
3232 5064 6.127196 GGAGGATTAGAGTGTCATCTCAACTT 60.127 42.308 5.57 0.00 36.97 2.66
3233 5065 6.638610 AGGATTAGAGTGTCATCTCAACTTG 58.361 40.000 5.57 0.00 36.97 3.16
3234 5066 6.438741 AGGATTAGAGTGTCATCTCAACTTGA 59.561 38.462 5.57 0.00 36.97 3.02
3235 5067 7.038729 AGGATTAGAGTGTCATCTCAACTTGAA 60.039 37.037 0.00 0.00 36.97 2.69
3236 5068 7.768120 GGATTAGAGTGTCATCTCAACTTGAAT 59.232 37.037 0.00 0.00 36.97 2.57
3237 5069 8.715191 ATTAGAGTGTCATCTCAACTTGAATC 57.285 34.615 0.00 0.00 36.97 2.52
3238 5070 6.357579 AGAGTGTCATCTCAACTTGAATCT 57.642 37.500 0.00 0.00 36.97 2.40
3239 5071 6.767456 AGAGTGTCATCTCAACTTGAATCTT 58.233 36.000 0.00 0.00 36.97 2.40
3240 5072 7.901029 AGAGTGTCATCTCAACTTGAATCTTA 58.099 34.615 0.00 0.00 36.97 2.10
3241 5073 8.538701 AGAGTGTCATCTCAACTTGAATCTTAT 58.461 33.333 0.00 0.00 36.97 1.73
3242 5074 9.809096 GAGTGTCATCTCAACTTGAATCTTATA 57.191 33.333 0.00 0.00 34.88 0.98
3243 5075 9.814899 AGTGTCATCTCAACTTGAATCTTATAG 57.185 33.333 0.00 0.00 0.00 1.31
3244 5076 9.809096 GTGTCATCTCAACTTGAATCTTATAGA 57.191 33.333 0.00 0.00 0.00 1.98
3279 5111 9.896645 TCTATAGGAATTTGGATGAATGATAGC 57.103 33.333 0.00 0.00 0.00 2.97
3280 5112 9.676861 CTATAGGAATTTGGATGAATGATAGCA 57.323 33.333 0.00 0.00 0.00 3.49
3281 5113 6.645790 AGGAATTTGGATGAATGATAGCAC 57.354 37.500 0.00 0.00 0.00 4.40
3282 5114 6.131264 AGGAATTTGGATGAATGATAGCACA 58.869 36.000 0.00 0.00 0.00 4.57
3283 5115 6.264744 AGGAATTTGGATGAATGATAGCACAG 59.735 38.462 0.00 0.00 0.00 3.66
3284 5116 6.401047 AATTTGGATGAATGATAGCACAGG 57.599 37.500 0.00 0.00 0.00 4.00
3285 5117 3.497103 TGGATGAATGATAGCACAGGG 57.503 47.619 0.00 0.00 0.00 4.45
3286 5118 3.047857 TGGATGAATGATAGCACAGGGA 58.952 45.455 0.00 0.00 0.00 4.20
3287 5119 3.459227 TGGATGAATGATAGCACAGGGAA 59.541 43.478 0.00 0.00 0.00 3.97
3288 5120 4.079844 TGGATGAATGATAGCACAGGGAAA 60.080 41.667 0.00 0.00 0.00 3.13
3289 5121 4.889409 GGATGAATGATAGCACAGGGAAAA 59.111 41.667 0.00 0.00 0.00 2.29
3290 5122 5.537674 GGATGAATGATAGCACAGGGAAAAT 59.462 40.000 0.00 0.00 0.00 1.82
3291 5123 6.716628 GGATGAATGATAGCACAGGGAAAATA 59.283 38.462 0.00 0.00 0.00 1.40
3292 5124 7.231317 GGATGAATGATAGCACAGGGAAAATAA 59.769 37.037 0.00 0.00 0.00 1.40
3293 5125 7.953005 TGAATGATAGCACAGGGAAAATAAA 57.047 32.000 0.00 0.00 0.00 1.40
3294 5126 7.771183 TGAATGATAGCACAGGGAAAATAAAC 58.229 34.615 0.00 0.00 0.00 2.01
3295 5127 7.395772 TGAATGATAGCACAGGGAAAATAAACA 59.604 33.333 0.00 0.00 0.00 2.83
3296 5128 7.716799 ATGATAGCACAGGGAAAATAAACAA 57.283 32.000 0.00 0.00 0.00 2.83
3297 5129 7.716799 TGATAGCACAGGGAAAATAAACAAT 57.283 32.000 0.00 0.00 0.00 2.71
3298 5130 8.133024 TGATAGCACAGGGAAAATAAACAATT 57.867 30.769 0.00 0.00 0.00 2.32
3299 5131 8.250332 TGATAGCACAGGGAAAATAAACAATTC 58.750 33.333 0.00 0.00 0.00 2.17
3300 5132 6.670695 AGCACAGGGAAAATAAACAATTCT 57.329 33.333 0.00 0.00 0.00 2.40
3301 5133 7.775053 AGCACAGGGAAAATAAACAATTCTA 57.225 32.000 0.00 0.00 0.00 2.10
3302 5134 7.602753 AGCACAGGGAAAATAAACAATTCTAC 58.397 34.615 0.00 0.00 0.00 2.59
3303 5135 7.232534 AGCACAGGGAAAATAAACAATTCTACA 59.767 33.333 0.00 0.00 0.00 2.74
3304 5136 7.870445 GCACAGGGAAAATAAACAATTCTACAA 59.130 33.333 0.00 0.00 0.00 2.41
3305 5137 9.757227 CACAGGGAAAATAAACAATTCTACAAA 57.243 29.630 0.00 0.00 0.00 2.83
3306 5138 9.981114 ACAGGGAAAATAAACAATTCTACAAAG 57.019 29.630 0.00 0.00 0.00 2.77
3317 5149 8.702163 AACAATTCTACAAAGAGTTTTTGTGG 57.298 30.769 19.19 16.70 42.05 4.17
3318 5150 8.062065 ACAATTCTACAAAGAGTTTTTGTGGA 57.938 30.769 17.80 17.80 44.39 4.02
3319 5151 8.695456 ACAATTCTACAAAGAGTTTTTGTGGAT 58.305 29.630 20.96 8.84 45.04 3.41
3320 5152 8.971321 CAATTCTACAAAGAGTTTTTGTGGATG 58.029 33.333 20.96 15.18 45.04 3.51
3321 5153 7.873719 TTCTACAAAGAGTTTTTGTGGATGA 57.126 32.000 20.96 8.84 45.04 2.92
3322 5154 8.463930 TTCTACAAAGAGTTTTTGTGGATGAT 57.536 30.769 20.96 0.00 45.04 2.45
3323 5155 8.463930 TCTACAAAGAGTTTTTGTGGATGATT 57.536 30.769 17.80 0.00 42.33 2.57
3324 5156 8.567948 TCTACAAAGAGTTTTTGTGGATGATTC 58.432 33.333 17.80 0.00 42.33 2.52
3325 5157 7.352079 ACAAAGAGTTTTTGTGGATGATTCT 57.648 32.000 10.75 0.00 40.70 2.40
3326 5158 7.785033 ACAAAGAGTTTTTGTGGATGATTCTT 58.215 30.769 10.75 0.00 40.70 2.52
3327 5159 8.260114 ACAAAGAGTTTTTGTGGATGATTCTTT 58.740 29.630 10.75 0.00 40.70 2.52
3328 5160 9.101655 CAAAGAGTTTTTGTGGATGATTCTTTT 57.898 29.630 0.00 0.00 31.97 2.27
3329 5161 9.671279 AAAGAGTTTTTGTGGATGATTCTTTTT 57.329 25.926 0.00 0.00 30.61 1.94
3350 5182 2.500392 TTCCCAAAATACTCCCACCG 57.500 50.000 0.00 0.00 0.00 4.94
3351 5183 1.364269 TCCCAAAATACTCCCACCGT 58.636 50.000 0.00 0.00 0.00 4.83
3352 5184 1.706305 TCCCAAAATACTCCCACCGTT 59.294 47.619 0.00 0.00 0.00 4.44
3353 5185 2.108601 TCCCAAAATACTCCCACCGTTT 59.891 45.455 0.00 0.00 0.00 3.60
3354 5186 2.490509 CCCAAAATACTCCCACCGTTTC 59.509 50.000 0.00 0.00 0.00 2.78
3355 5187 3.150767 CCAAAATACTCCCACCGTTTCA 58.849 45.455 0.00 0.00 0.00 2.69
3356 5188 3.570550 CCAAAATACTCCCACCGTTTCAA 59.429 43.478 0.00 0.00 0.00 2.69
3357 5189 4.038162 CCAAAATACTCCCACCGTTTCAAA 59.962 41.667 0.00 0.00 0.00 2.69
3358 5190 5.452077 CCAAAATACTCCCACCGTTTCAAAA 60.452 40.000 0.00 0.00 0.00 2.44
3359 5191 6.220201 CAAAATACTCCCACCGTTTCAAAAT 58.780 36.000 0.00 0.00 0.00 1.82
3360 5192 7.371936 CAAAATACTCCCACCGTTTCAAAATA 58.628 34.615 0.00 0.00 0.00 1.40
3361 5193 7.527568 AAATACTCCCACCGTTTCAAAATAA 57.472 32.000 0.00 0.00 0.00 1.40
3362 5194 7.712204 AATACTCCCACCGTTTCAAAATAAT 57.288 32.000 0.00 0.00 0.00 1.28
3363 5195 7.712204 ATACTCCCACCGTTTCAAAATAATT 57.288 32.000 0.00 0.00 0.00 1.40
3364 5196 8.810990 ATACTCCCACCGTTTCAAAATAATTA 57.189 30.769 0.00 0.00 0.00 1.40
3365 5197 7.527568 ACTCCCACCGTTTCAAAATAATTAA 57.472 32.000 0.00 0.00 0.00 1.40
3366 5198 7.953752 ACTCCCACCGTTTCAAAATAATTAAA 58.046 30.769 0.00 0.00 0.00 1.52
3367 5199 8.085909 ACTCCCACCGTTTCAAAATAATTAAAG 58.914 33.333 0.00 0.00 0.00 1.85
3368 5200 7.953752 TCCCACCGTTTCAAAATAATTAAAGT 58.046 30.769 0.00 0.00 0.00 2.66
3369 5201 8.422566 TCCCACCGTTTCAAAATAATTAAAGTT 58.577 29.630 0.00 0.00 0.00 2.66
3370 5202 8.705134 CCCACCGTTTCAAAATAATTAAAGTTC 58.295 33.333 0.00 0.00 0.00 3.01
3371 5203 9.471084 CCACCGTTTCAAAATAATTAAAGTTCT 57.529 29.630 0.00 0.00 0.00 3.01
3416 5248 8.795842 TTTTTAGTTTGACCAAGTCTACAGAA 57.204 30.769 0.00 0.00 33.15 3.02
3417 5249 8.795842 TTTTAGTTTGACCAAGTCTACAGAAA 57.204 30.769 0.00 0.00 33.15 2.52
3418 5250 8.795842 TTTAGTTTGACCAAGTCTACAGAAAA 57.204 30.769 0.00 0.00 33.15 2.29
3419 5251 8.974060 TTAGTTTGACCAAGTCTACAGAAAAT 57.026 30.769 0.00 0.00 33.15 1.82
3420 5252 7.497925 AGTTTGACCAAGTCTACAGAAAATC 57.502 36.000 0.00 0.00 33.15 2.17
3421 5253 6.486993 AGTTTGACCAAGTCTACAGAAAATCC 59.513 38.462 0.00 0.00 33.15 3.01
3422 5254 5.560722 TGACCAAGTCTACAGAAAATCCA 57.439 39.130 0.00 0.00 33.15 3.41
3423 5255 5.305585 TGACCAAGTCTACAGAAAATCCAC 58.694 41.667 0.00 0.00 33.15 4.02
3424 5256 5.163248 TGACCAAGTCTACAGAAAATCCACA 60.163 40.000 0.00 0.00 33.15 4.17
3425 5257 5.690865 ACCAAGTCTACAGAAAATCCACAA 58.309 37.500 0.00 0.00 0.00 3.33
3426 5258 6.126409 ACCAAGTCTACAGAAAATCCACAAA 58.874 36.000 0.00 0.00 0.00 2.83
3427 5259 6.263168 ACCAAGTCTACAGAAAATCCACAAAG 59.737 38.462 0.00 0.00 0.00 2.77
3428 5260 6.486657 CCAAGTCTACAGAAAATCCACAAAGA 59.513 38.462 0.00 0.00 0.00 2.52
3429 5261 7.175641 CCAAGTCTACAGAAAATCCACAAAGAT 59.824 37.037 0.00 0.00 0.00 2.40
3430 5262 7.913674 AGTCTACAGAAAATCCACAAAGATC 57.086 36.000 0.00 0.00 0.00 2.75
3431 5263 7.684529 AGTCTACAGAAAATCCACAAAGATCT 58.315 34.615 0.00 0.00 0.00 2.75
3432 5264 8.816894 AGTCTACAGAAAATCCACAAAGATCTA 58.183 33.333 0.00 0.00 0.00 1.98
3433 5265 8.874816 GTCTACAGAAAATCCACAAAGATCTAC 58.125 37.037 0.00 0.00 0.00 2.59
3434 5266 8.593679 TCTACAGAAAATCCACAAAGATCTACA 58.406 33.333 0.00 0.00 0.00 2.74
3435 5267 9.219603 CTACAGAAAATCCACAAAGATCTACAA 57.780 33.333 0.00 0.00 0.00 2.41
3436 5268 8.641498 ACAGAAAATCCACAAAGATCTACAAT 57.359 30.769 0.00 0.00 0.00 2.71
3437 5269 9.739276 ACAGAAAATCCACAAAGATCTACAATA 57.261 29.630 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.530311 TGTTGTTTTGTCCATCTATAATGCAAT 58.470 29.630 0.00 0.00 0.00 3.56
7 8 7.890515 TGTTGTTTTGTCCATCTATAATGCAA 58.109 30.769 0.00 0.00 0.00 4.08
8 9 7.459795 TGTTGTTTTGTCCATCTATAATGCA 57.540 32.000 0.00 0.00 0.00 3.96
9 10 7.812191 TGTTGTTGTTTTGTCCATCTATAATGC 59.188 33.333 0.00 0.00 0.00 3.56
10 11 9.689976 TTGTTGTTGTTTTGTCCATCTATAATG 57.310 29.630 0.00 0.00 0.00 1.90
11 12 9.691362 GTTGTTGTTGTTTTGTCCATCTATAAT 57.309 29.630 0.00 0.00 0.00 1.28
12 13 8.687242 TGTTGTTGTTGTTTTGTCCATCTATAA 58.313 29.630 0.00 0.00 0.00 0.98
13 14 8.226819 TGTTGTTGTTGTTTTGTCCATCTATA 57.773 30.769 0.00 0.00 0.00 1.31
14 15 7.106439 TGTTGTTGTTGTTTTGTCCATCTAT 57.894 32.000 0.00 0.00 0.00 1.98
15 16 6.516739 TGTTGTTGTTGTTTTGTCCATCTA 57.483 33.333 0.00 0.00 0.00 1.98
16 17 5.398603 TGTTGTTGTTGTTTTGTCCATCT 57.601 34.783 0.00 0.00 0.00 2.90
17 18 5.406780 TGTTGTTGTTGTTGTTTTGTCCATC 59.593 36.000 0.00 0.00 0.00 3.51
18 19 5.300752 TGTTGTTGTTGTTGTTTTGTCCAT 58.699 33.333 0.00 0.00 0.00 3.41
19 20 4.693283 TGTTGTTGTTGTTGTTTTGTCCA 58.307 34.783 0.00 0.00 0.00 4.02
20 21 5.006746 TGTTGTTGTTGTTGTTGTTTTGTCC 59.993 36.000 0.00 0.00 0.00 4.02
21 22 6.037423 TGTTGTTGTTGTTGTTGTTTTGTC 57.963 33.333 0.00 0.00 0.00 3.18
22 23 6.128282 TGTTGTTGTTGTTGTTGTTGTTTTGT 60.128 30.769 0.00 0.00 0.00 2.83
23 24 6.250819 TGTTGTTGTTGTTGTTGTTGTTTTG 58.749 32.000 0.00 0.00 0.00 2.44
24 25 6.422776 TGTTGTTGTTGTTGTTGTTGTTTT 57.577 29.167 0.00 0.00 0.00 2.43
25 26 6.128282 TGTTGTTGTTGTTGTTGTTGTTGTTT 60.128 30.769 0.00 0.00 0.00 2.83
551 554 7.147976 CACAAAAGCTAAAAGGCAAGTTCTAT 58.852 34.615 0.00 0.00 34.17 1.98
1036 1039 4.024809 GGCATACGTAATTGCTTCTCTTCC 60.025 45.833 17.99 0.00 38.88 3.46
1241 1244 1.333308 CAACGGTGTGCAAGAACATCA 59.667 47.619 0.00 0.00 30.07 3.07
1513 1518 8.661352 ACAATCCTATTTGGTGAAAACAAAAG 57.339 30.769 0.00 0.00 40.74 2.27
1593 1598 5.178252 CAGAGAAACACATGTGTAACTGAGG 59.822 44.000 30.75 17.72 44.13 3.86
1596 1601 5.741425 CACAGAGAAACACATGTGTAACTG 58.259 41.667 30.75 30.42 44.13 3.16
1597 1602 5.991328 CACAGAGAAACACATGTGTAACT 57.009 39.130 30.75 28.34 44.13 2.24
1604 1609 4.096231 TGTTTGGACACAGAGAAACACATG 59.904 41.667 0.00 0.00 34.27 3.21
1605 1610 4.269183 TGTTTGGACACAGAGAAACACAT 58.731 39.130 0.00 0.00 34.27 3.21
1606 1611 3.680490 TGTTTGGACACAGAGAAACACA 58.320 40.909 0.00 0.00 34.27 3.72
1671 3356 7.209475 AGAAAGATGTACAACAATTGTTTGGG 58.791 34.615 21.10 12.66 42.22 4.12
2099 3926 0.881118 TTGCGCAACCTCCTCATTTC 59.119 50.000 21.02 0.00 0.00 2.17
2824 4654 7.612065 TCGAGGGATAATCAAAGAATAAGGA 57.388 36.000 0.00 0.00 0.00 3.36
2977 4809 0.988678 AGGGACAGATTAGGGTGGCC 60.989 60.000 0.00 0.00 41.76 5.36
3017 4849 8.054152 ACCTTTTGAATTCATTTGCAGTTTTT 57.946 26.923 9.40 0.00 0.00 1.94
3021 4853 5.528320 CCAACCTTTTGAATTCATTTGCAGT 59.472 36.000 9.40 0.08 34.24 4.40
3027 4859 9.844257 TGTTTAATCCAACCTTTTGAATTCATT 57.156 25.926 9.40 0.00 34.24 2.57
3051 4883 9.965824 CACTTTGTTGTTTAGAGGATTTTATGT 57.034 29.630 0.00 0.00 0.00 2.29
3052 4884 8.915654 GCACTTTGTTGTTTAGAGGATTTTATG 58.084 33.333 0.00 0.00 0.00 1.90
3053 4885 8.637986 TGCACTTTGTTGTTTAGAGGATTTTAT 58.362 29.630 0.00 0.00 0.00 1.40
3054 4886 8.001881 TGCACTTTGTTGTTTAGAGGATTTTA 57.998 30.769 0.00 0.00 0.00 1.52
3055 4887 6.872920 TGCACTTTGTTGTTTAGAGGATTTT 58.127 32.000 0.00 0.00 0.00 1.82
3056 4888 6.463995 TGCACTTTGTTGTTTAGAGGATTT 57.536 33.333 0.00 0.00 0.00 2.17
3057 4889 6.463995 TTGCACTTTGTTGTTTAGAGGATT 57.536 33.333 0.00 0.00 0.00 3.01
3058 4890 5.507985 GCTTGCACTTTGTTGTTTAGAGGAT 60.508 40.000 0.00 0.00 0.00 3.24
3059 4891 4.202010 GCTTGCACTTTGTTGTTTAGAGGA 60.202 41.667 0.00 0.00 0.00 3.71
3060 4892 4.044426 GCTTGCACTTTGTTGTTTAGAGG 58.956 43.478 0.00 0.00 0.00 3.69
3061 4893 4.671377 TGCTTGCACTTTGTTGTTTAGAG 58.329 39.130 0.00 0.00 0.00 2.43
3062 4894 4.710423 TGCTTGCACTTTGTTGTTTAGA 57.290 36.364 0.00 0.00 0.00 2.10
3063 4895 4.864247 ACTTGCTTGCACTTTGTTGTTTAG 59.136 37.500 0.00 0.00 0.00 1.85
3064 4896 4.815269 ACTTGCTTGCACTTTGTTGTTTA 58.185 34.783 0.00 0.00 0.00 2.01
3065 4897 3.663025 ACTTGCTTGCACTTTGTTGTTT 58.337 36.364 0.00 0.00 0.00 2.83
3066 4898 3.317603 ACTTGCTTGCACTTTGTTGTT 57.682 38.095 0.00 0.00 0.00 2.83
3067 4899 3.056607 AGAACTTGCTTGCACTTTGTTGT 60.057 39.130 0.00 0.00 0.00 3.32
3068 4900 3.514645 AGAACTTGCTTGCACTTTGTTG 58.485 40.909 0.00 0.00 0.00 3.33
3069 4901 3.874392 AGAACTTGCTTGCACTTTGTT 57.126 38.095 0.00 0.00 0.00 2.83
3070 4902 3.874392 AAGAACTTGCTTGCACTTTGT 57.126 38.095 0.00 0.00 0.00 2.83
3071 4903 4.671377 TGTAAGAACTTGCTTGCACTTTG 58.329 39.130 0.00 0.00 35.92 2.77
3072 4904 4.981806 TGTAAGAACTTGCTTGCACTTT 57.018 36.364 0.00 0.00 35.92 2.66
3073 4905 4.734695 GCTTGTAAGAACTTGCTTGCACTT 60.735 41.667 0.00 0.00 39.62 3.16
3074 4906 3.243201 GCTTGTAAGAACTTGCTTGCACT 60.243 43.478 0.00 0.00 39.62 4.40
3075 4907 3.045688 GCTTGTAAGAACTTGCTTGCAC 58.954 45.455 0.00 0.00 39.62 4.57
3076 4908 2.951642 AGCTTGTAAGAACTTGCTTGCA 59.048 40.909 16.11 0.00 38.45 4.08
3077 4909 3.303406 CAGCTTGTAAGAACTTGCTTGC 58.697 45.455 4.55 7.81 34.37 4.01
3078 4910 3.243168 TGCAGCTTGTAAGAACTTGCTTG 60.243 43.478 0.00 0.00 34.37 4.01
3079 4911 2.951642 TGCAGCTTGTAAGAACTTGCTT 59.048 40.909 0.00 0.00 34.37 3.91
3080 4912 2.575532 TGCAGCTTGTAAGAACTTGCT 58.424 42.857 0.00 0.00 36.04 3.91
3081 4913 3.565905 ATGCAGCTTGTAAGAACTTGC 57.434 42.857 0.00 0.00 0.00 4.01
3082 4914 8.236586 TGTATAAATGCAGCTTGTAAGAACTTG 58.763 33.333 0.00 0.00 0.00 3.16
3083 4915 8.335532 TGTATAAATGCAGCTTGTAAGAACTT 57.664 30.769 0.00 0.00 0.00 2.66
3084 4916 7.921786 TGTATAAATGCAGCTTGTAAGAACT 57.078 32.000 0.00 0.00 0.00 3.01
3085 4917 8.964420 TTTGTATAAATGCAGCTTGTAAGAAC 57.036 30.769 0.00 0.00 0.00 3.01
3086 4918 9.787532 GATTTGTATAAATGCAGCTTGTAAGAA 57.212 29.630 1.75 0.00 36.66 2.52
3087 4919 8.122330 CGATTTGTATAAATGCAGCTTGTAAGA 58.878 33.333 1.75 0.00 36.66 2.10
3088 4920 8.122330 TCGATTTGTATAAATGCAGCTTGTAAG 58.878 33.333 1.75 0.00 36.66 2.34
3089 4921 7.980062 TCGATTTGTATAAATGCAGCTTGTAA 58.020 30.769 1.75 0.00 36.66 2.41
3090 4922 7.254761 CCTCGATTTGTATAAATGCAGCTTGTA 60.255 37.037 1.75 0.00 36.66 2.41
3091 4923 6.435430 TCGATTTGTATAAATGCAGCTTGT 57.565 33.333 1.75 0.00 36.66 3.16
3092 4924 5.911280 CCTCGATTTGTATAAATGCAGCTTG 59.089 40.000 1.75 0.00 36.66 4.01
3093 4925 5.822519 TCCTCGATTTGTATAAATGCAGCTT 59.177 36.000 1.75 0.00 36.66 3.74
3094 4926 5.368145 TCCTCGATTTGTATAAATGCAGCT 58.632 37.500 1.75 0.00 36.66 4.24
3095 4927 5.673337 TCCTCGATTTGTATAAATGCAGC 57.327 39.130 1.75 0.00 36.66 5.25
3096 4928 6.430451 GGTTCCTCGATTTGTATAAATGCAG 58.570 40.000 1.75 0.00 36.66 4.41
3097 4929 5.298276 GGGTTCCTCGATTTGTATAAATGCA 59.702 40.000 1.75 0.00 36.66 3.96
3098 4930 5.278315 GGGGTTCCTCGATTTGTATAAATGC 60.278 44.000 1.75 0.00 36.66 3.56
3099 4931 5.825679 TGGGGTTCCTCGATTTGTATAAATG 59.174 40.000 1.75 0.00 36.66 2.32
3100 4932 6.008696 TGGGGTTCCTCGATTTGTATAAAT 57.991 37.500 0.00 0.00 39.16 1.40
3101 4933 5.438698 TGGGGTTCCTCGATTTGTATAAA 57.561 39.130 0.00 0.00 0.00 1.40
3102 4934 5.438698 TTGGGGTTCCTCGATTTGTATAA 57.561 39.130 0.00 0.00 0.00 0.98
3103 4935 5.438698 TTTGGGGTTCCTCGATTTGTATA 57.561 39.130 0.00 0.00 0.00 1.47
3104 4936 4.310022 TTTGGGGTTCCTCGATTTGTAT 57.690 40.909 0.00 0.00 0.00 2.29
3105 4937 3.791953 TTTGGGGTTCCTCGATTTGTA 57.208 42.857 0.00 0.00 0.00 2.41
3106 4938 2.668144 TTTGGGGTTCCTCGATTTGT 57.332 45.000 0.00 0.00 0.00 2.83
3107 4939 5.852282 ATTATTTGGGGTTCCTCGATTTG 57.148 39.130 0.00 0.00 0.00 2.32
3108 4940 8.547481 AATAATTATTTGGGGTTCCTCGATTT 57.453 30.769 4.81 0.00 0.00 2.17
3109 4941 8.547481 AAATAATTATTTGGGGTTCCTCGATT 57.453 30.769 20.14 0.00 34.79 3.34
3110 4942 9.822727 ATAAATAATTATTTGGGGTTCCTCGAT 57.177 29.630 26.61 9.97 36.62 3.59
3111 4943 9.649316 AATAAATAATTATTTGGGGTTCCTCGA 57.351 29.630 26.61 8.37 38.31 4.04
3134 4966 9.699703 GCCCTTCATGTTTGTACTTTTAAAATA 57.300 29.630 0.09 0.00 0.00 1.40
3135 4967 7.659799 GGCCCTTCATGTTTGTACTTTTAAAAT 59.340 33.333 0.09 0.00 0.00 1.82
3136 4968 6.987404 GGCCCTTCATGTTTGTACTTTTAAAA 59.013 34.615 0.00 0.00 0.00 1.52
3137 4969 6.325286 AGGCCCTTCATGTTTGTACTTTTAAA 59.675 34.615 0.00 0.00 0.00 1.52
3138 4970 5.836358 AGGCCCTTCATGTTTGTACTTTTAA 59.164 36.000 0.00 0.00 0.00 1.52
3139 4971 5.390387 AGGCCCTTCATGTTTGTACTTTTA 58.610 37.500 0.00 0.00 0.00 1.52
3140 4972 4.223144 AGGCCCTTCATGTTTGTACTTTT 58.777 39.130 0.00 0.00 0.00 2.27
3141 4973 3.844640 AGGCCCTTCATGTTTGTACTTT 58.155 40.909 0.00 0.00 0.00 2.66
3142 4974 3.525800 AGGCCCTTCATGTTTGTACTT 57.474 42.857 0.00 0.00 0.00 2.24
3143 4975 4.862641 ATAGGCCCTTCATGTTTGTACT 57.137 40.909 0.00 0.00 0.00 2.73
3144 4976 5.417580 TCAAATAGGCCCTTCATGTTTGTAC 59.582 40.000 0.00 0.00 38.28 2.90
3145 4977 5.575157 TCAAATAGGCCCTTCATGTTTGTA 58.425 37.500 0.00 0.00 38.28 2.41
3146 4978 4.415596 TCAAATAGGCCCTTCATGTTTGT 58.584 39.130 0.00 0.00 38.28 2.83
3147 4979 5.603170 ATCAAATAGGCCCTTCATGTTTG 57.397 39.130 0.00 1.65 38.40 2.93
3148 4980 5.721000 TGAATCAAATAGGCCCTTCATGTTT 59.279 36.000 0.00 0.00 0.00 2.83
3149 4981 5.271598 TGAATCAAATAGGCCCTTCATGTT 58.728 37.500 0.00 0.00 0.00 2.71
3150 4982 4.870636 TGAATCAAATAGGCCCTTCATGT 58.129 39.130 0.00 0.00 0.00 3.21
3151 4983 7.528996 TTATGAATCAAATAGGCCCTTCATG 57.471 36.000 0.00 0.00 35.56 3.07
3152 4984 9.827198 TTATTATGAATCAAATAGGCCCTTCAT 57.173 29.630 0.00 5.98 37.21 2.57
3153 4985 9.827198 ATTATTATGAATCAAATAGGCCCTTCA 57.173 29.630 0.00 0.00 0.00 3.02
3183 5015 9.793259 TCCACTTCTTACATATTCTTGTTTCTT 57.207 29.630 0.00 0.00 0.00 2.52
3184 5016 9.442047 CTCCACTTCTTACATATTCTTGTTTCT 57.558 33.333 0.00 0.00 0.00 2.52
3185 5017 8.669243 CCTCCACTTCTTACATATTCTTGTTTC 58.331 37.037 0.00 0.00 0.00 2.78
3186 5018 8.383175 TCCTCCACTTCTTACATATTCTTGTTT 58.617 33.333 0.00 0.00 0.00 2.83
3187 5019 7.918076 TCCTCCACTTCTTACATATTCTTGTT 58.082 34.615 0.00 0.00 0.00 2.83
3188 5020 7.496346 TCCTCCACTTCTTACATATTCTTGT 57.504 36.000 0.00 0.00 0.00 3.16
3189 5021 8.970859 AATCCTCCACTTCTTACATATTCTTG 57.029 34.615 0.00 0.00 0.00 3.02
3191 5023 9.661954 TCTAATCCTCCACTTCTTACATATTCT 57.338 33.333 0.00 0.00 0.00 2.40
3192 5024 9.921637 CTCTAATCCTCCACTTCTTACATATTC 57.078 37.037 0.00 0.00 0.00 1.75
3193 5025 9.440761 ACTCTAATCCTCCACTTCTTACATATT 57.559 33.333 0.00 0.00 0.00 1.28
3194 5026 8.865090 CACTCTAATCCTCCACTTCTTACATAT 58.135 37.037 0.00 0.00 0.00 1.78
3195 5027 7.839705 ACACTCTAATCCTCCACTTCTTACATA 59.160 37.037 0.00 0.00 0.00 2.29
3196 5028 6.670027 ACACTCTAATCCTCCACTTCTTACAT 59.330 38.462 0.00 0.00 0.00 2.29
3197 5029 6.017192 ACACTCTAATCCTCCACTTCTTACA 58.983 40.000 0.00 0.00 0.00 2.41
3198 5030 6.153000 TGACACTCTAATCCTCCACTTCTTAC 59.847 42.308 0.00 0.00 0.00 2.34
3199 5031 6.253758 TGACACTCTAATCCTCCACTTCTTA 58.746 40.000 0.00 0.00 0.00 2.10
3200 5032 5.087323 TGACACTCTAATCCTCCACTTCTT 58.913 41.667 0.00 0.00 0.00 2.52
3201 5033 4.678256 TGACACTCTAATCCTCCACTTCT 58.322 43.478 0.00 0.00 0.00 2.85
3202 5034 5.362430 AGATGACACTCTAATCCTCCACTTC 59.638 44.000 0.00 0.00 0.00 3.01
3203 5035 5.276440 AGATGACACTCTAATCCTCCACTT 58.724 41.667 0.00 0.00 0.00 3.16
3204 5036 4.877773 AGATGACACTCTAATCCTCCACT 58.122 43.478 0.00 0.00 0.00 4.00
3205 5037 4.646945 TGAGATGACACTCTAATCCTCCAC 59.353 45.833 0.00 0.00 37.73 4.02
3206 5038 4.871822 TGAGATGACACTCTAATCCTCCA 58.128 43.478 0.00 0.00 37.73 3.86
3207 5039 5.362430 AGTTGAGATGACACTCTAATCCTCC 59.638 44.000 0.00 0.00 37.73 4.30
3208 5040 6.463995 AGTTGAGATGACACTCTAATCCTC 57.536 41.667 0.00 0.00 37.73 3.71
3209 5041 6.438741 TCAAGTTGAGATGACACTCTAATCCT 59.561 38.462 0.08 0.00 37.73 3.24
3210 5042 6.634805 TCAAGTTGAGATGACACTCTAATCC 58.365 40.000 0.08 0.00 37.73 3.01
3211 5043 8.715191 ATTCAAGTTGAGATGACACTCTAATC 57.285 34.615 5.56 0.00 37.73 1.75
3212 5044 8.538701 AGATTCAAGTTGAGATGACACTCTAAT 58.461 33.333 5.56 0.00 37.73 1.73
3213 5045 7.901029 AGATTCAAGTTGAGATGACACTCTAA 58.099 34.615 5.56 0.00 37.73 2.10
3214 5046 7.473735 AGATTCAAGTTGAGATGACACTCTA 57.526 36.000 5.56 0.00 37.73 2.43
3215 5047 6.357579 AGATTCAAGTTGAGATGACACTCT 57.642 37.500 5.56 0.00 37.73 3.24
3216 5048 8.715191 ATAAGATTCAAGTTGAGATGACACTC 57.285 34.615 5.56 0.00 37.42 3.51
3217 5049 9.814899 CTATAAGATTCAAGTTGAGATGACACT 57.185 33.333 5.56 0.00 0.00 3.55
3218 5050 9.809096 TCTATAAGATTCAAGTTGAGATGACAC 57.191 33.333 5.56 0.00 0.00 3.67
3253 5085 9.896645 GCTATCATTCATCCAAATTCCTATAGA 57.103 33.333 0.00 0.00 0.00 1.98
3254 5086 9.676861 TGCTATCATTCATCCAAATTCCTATAG 57.323 33.333 0.00 0.00 0.00 1.31
3255 5087 9.453572 GTGCTATCATTCATCCAAATTCCTATA 57.546 33.333 0.00 0.00 0.00 1.31
3256 5088 7.946219 TGTGCTATCATTCATCCAAATTCCTAT 59.054 33.333 0.00 0.00 0.00 2.57
3257 5089 7.289310 TGTGCTATCATTCATCCAAATTCCTA 58.711 34.615 0.00 0.00 0.00 2.94
3258 5090 6.131264 TGTGCTATCATTCATCCAAATTCCT 58.869 36.000 0.00 0.00 0.00 3.36
3259 5091 6.395426 TGTGCTATCATTCATCCAAATTCC 57.605 37.500 0.00 0.00 0.00 3.01
3260 5092 6.444633 CCTGTGCTATCATTCATCCAAATTC 58.555 40.000 0.00 0.00 0.00 2.17
3261 5093 5.303589 CCCTGTGCTATCATTCATCCAAATT 59.696 40.000 0.00 0.00 0.00 1.82
3262 5094 4.831155 CCCTGTGCTATCATTCATCCAAAT 59.169 41.667 0.00 0.00 0.00 2.32
3263 5095 4.079844 TCCCTGTGCTATCATTCATCCAAA 60.080 41.667 0.00 0.00 0.00 3.28
3264 5096 3.459227 TCCCTGTGCTATCATTCATCCAA 59.541 43.478 0.00 0.00 0.00 3.53
3265 5097 3.047857 TCCCTGTGCTATCATTCATCCA 58.952 45.455 0.00 0.00 0.00 3.41
3266 5098 3.777106 TCCCTGTGCTATCATTCATCC 57.223 47.619 0.00 0.00 0.00 3.51
3267 5099 6.645790 ATTTTCCCTGTGCTATCATTCATC 57.354 37.500 0.00 0.00 0.00 2.92
3268 5100 8.416329 GTTTATTTTCCCTGTGCTATCATTCAT 58.584 33.333 0.00 0.00 0.00 2.57
3269 5101 7.395772 TGTTTATTTTCCCTGTGCTATCATTCA 59.604 33.333 0.00 0.00 0.00 2.57
3270 5102 7.771183 TGTTTATTTTCCCTGTGCTATCATTC 58.229 34.615 0.00 0.00 0.00 2.67
3271 5103 7.716799 TGTTTATTTTCCCTGTGCTATCATT 57.283 32.000 0.00 0.00 0.00 2.57
3272 5104 7.716799 TTGTTTATTTTCCCTGTGCTATCAT 57.283 32.000 0.00 0.00 0.00 2.45
3273 5105 7.716799 ATTGTTTATTTTCCCTGTGCTATCA 57.283 32.000 0.00 0.00 0.00 2.15
3274 5106 8.470002 AGAATTGTTTATTTTCCCTGTGCTATC 58.530 33.333 0.00 0.00 0.00 2.08
3275 5107 8.366359 AGAATTGTTTATTTTCCCTGTGCTAT 57.634 30.769 0.00 0.00 0.00 2.97
3276 5108 7.775053 AGAATTGTTTATTTTCCCTGTGCTA 57.225 32.000 0.00 0.00 0.00 3.49
3277 5109 6.670695 AGAATTGTTTATTTTCCCTGTGCT 57.329 33.333 0.00 0.00 0.00 4.40
3278 5110 7.375053 TGTAGAATTGTTTATTTTCCCTGTGC 58.625 34.615 0.00 0.00 0.00 4.57
3279 5111 9.757227 TTTGTAGAATTGTTTATTTTCCCTGTG 57.243 29.630 0.00 0.00 0.00 3.66
3280 5112 9.981114 CTTTGTAGAATTGTTTATTTTCCCTGT 57.019 29.630 0.00 0.00 0.00 4.00
3291 5123 9.150348 CCACAAAAACTCTTTGTAGAATTGTTT 57.850 29.630 2.75 0.00 40.30 2.83
3292 5124 8.527810 TCCACAAAAACTCTTTGTAGAATTGTT 58.472 29.630 2.75 0.00 40.30 2.83
3293 5125 8.062065 TCCACAAAAACTCTTTGTAGAATTGT 57.938 30.769 2.75 0.00 40.30 2.71
3294 5126 8.971321 CATCCACAAAAACTCTTTGTAGAATTG 58.029 33.333 2.75 0.00 40.30 2.32
3295 5127 8.912988 TCATCCACAAAAACTCTTTGTAGAATT 58.087 29.630 2.75 0.00 40.30 2.17
3296 5128 8.463930 TCATCCACAAAAACTCTTTGTAGAAT 57.536 30.769 2.75 0.00 40.30 2.40
3297 5129 7.873719 TCATCCACAAAAACTCTTTGTAGAA 57.126 32.000 2.75 0.00 40.30 2.10
3298 5130 8.463930 AATCATCCACAAAAACTCTTTGTAGA 57.536 30.769 2.75 2.30 40.30 2.59
3299 5131 8.571336 AGAATCATCCACAAAAACTCTTTGTAG 58.429 33.333 2.75 0.00 40.30 2.74
3300 5132 8.463930 AGAATCATCCACAAAAACTCTTTGTA 57.536 30.769 2.75 0.00 40.30 2.41
3301 5133 7.352079 AGAATCATCCACAAAAACTCTTTGT 57.648 32.000 0.00 0.00 42.75 2.83
3302 5134 8.652810 AAAGAATCATCCACAAAAACTCTTTG 57.347 30.769 0.00 0.00 31.31 2.77
3303 5135 9.671279 AAAAAGAATCATCCACAAAAACTCTTT 57.329 25.926 0.00 0.00 33.27 2.52
3328 5160 3.574826 CGGTGGGAGTATTTTGGGAAAAA 59.425 43.478 0.00 0.00 33.47 1.94
3329 5161 3.158676 CGGTGGGAGTATTTTGGGAAAA 58.841 45.455 0.00 0.00 34.41 2.29
3330 5162 2.108601 ACGGTGGGAGTATTTTGGGAAA 59.891 45.455 0.00 0.00 0.00 3.13
3331 5163 1.706305 ACGGTGGGAGTATTTTGGGAA 59.294 47.619 0.00 0.00 0.00 3.97
3332 5164 1.364269 ACGGTGGGAGTATTTTGGGA 58.636 50.000 0.00 0.00 0.00 4.37
3333 5165 2.209690 AACGGTGGGAGTATTTTGGG 57.790 50.000 0.00 0.00 0.00 4.12
3334 5166 3.150767 TGAAACGGTGGGAGTATTTTGG 58.849 45.455 0.00 0.00 0.00 3.28
3335 5167 4.839668 TTGAAACGGTGGGAGTATTTTG 57.160 40.909 0.00 0.00 0.00 2.44
3336 5168 5.855740 TTTTGAAACGGTGGGAGTATTTT 57.144 34.783 0.00 0.00 0.00 1.82
3337 5169 7.527568 TTATTTTGAAACGGTGGGAGTATTT 57.472 32.000 0.00 0.00 0.00 1.40
3338 5170 7.712204 ATTATTTTGAAACGGTGGGAGTATT 57.288 32.000 0.00 0.00 0.00 1.89
3339 5171 7.712204 AATTATTTTGAAACGGTGGGAGTAT 57.288 32.000 0.00 0.00 0.00 2.12
3340 5172 8.632906 TTAATTATTTTGAAACGGTGGGAGTA 57.367 30.769 0.00 0.00 0.00 2.59
3341 5173 7.527568 TTAATTATTTTGAAACGGTGGGAGT 57.472 32.000 0.00 0.00 0.00 3.85
3342 5174 8.085909 ACTTTAATTATTTTGAAACGGTGGGAG 58.914 33.333 0.00 0.00 0.00 4.30
3343 5175 7.953752 ACTTTAATTATTTTGAAACGGTGGGA 58.046 30.769 0.00 0.00 0.00 4.37
3344 5176 8.596271 AACTTTAATTATTTTGAAACGGTGGG 57.404 30.769 0.00 0.00 0.00 4.61
3345 5177 9.471084 AGAACTTTAATTATTTTGAAACGGTGG 57.529 29.630 0.00 0.00 0.00 4.61
3391 5223 8.795842 TTCTGTAGACTTGGTCAAACTAAAAA 57.204 30.769 0.52 0.00 34.60 1.94
3392 5224 8.795842 TTTCTGTAGACTTGGTCAAACTAAAA 57.204 30.769 0.52 1.98 34.60 1.52
3393 5225 8.795842 TTTTCTGTAGACTTGGTCAAACTAAA 57.204 30.769 0.52 2.22 34.60 1.85
3394 5226 8.974060 ATTTTCTGTAGACTTGGTCAAACTAA 57.026 30.769 0.52 0.00 34.60 2.24
3395 5227 7.660208 GGATTTTCTGTAGACTTGGTCAAACTA 59.340 37.037 0.52 0.00 34.60 2.24
3396 5228 6.486993 GGATTTTCTGTAGACTTGGTCAAACT 59.513 38.462 0.52 0.00 34.60 2.66
3397 5229 6.262273 TGGATTTTCTGTAGACTTGGTCAAAC 59.738 38.462 0.52 0.00 34.60 2.93
3398 5230 6.262273 GTGGATTTTCTGTAGACTTGGTCAAA 59.738 38.462 0.52 0.00 34.60 2.69
3399 5231 5.763204 GTGGATTTTCTGTAGACTTGGTCAA 59.237 40.000 0.52 0.00 34.60 3.18
3400 5232 5.163248 TGTGGATTTTCTGTAGACTTGGTCA 60.163 40.000 0.52 0.00 34.60 4.02
3401 5233 5.305585 TGTGGATTTTCTGTAGACTTGGTC 58.694 41.667 0.00 0.00 0.00 4.02
3402 5234 5.304686 TGTGGATTTTCTGTAGACTTGGT 57.695 39.130 0.00 0.00 0.00 3.67
3403 5235 6.486657 TCTTTGTGGATTTTCTGTAGACTTGG 59.513 38.462 0.00 0.00 0.00 3.61
3404 5236 7.496529 TCTTTGTGGATTTTCTGTAGACTTG 57.503 36.000 0.00 0.00 0.00 3.16
3405 5237 8.160106 AGATCTTTGTGGATTTTCTGTAGACTT 58.840 33.333 0.00 0.00 0.00 3.01
3406 5238 7.684529 AGATCTTTGTGGATTTTCTGTAGACT 58.315 34.615 0.00 0.00 0.00 3.24
3407 5239 7.913674 AGATCTTTGTGGATTTTCTGTAGAC 57.086 36.000 0.00 0.00 0.00 2.59
3408 5240 8.593679 TGTAGATCTTTGTGGATTTTCTGTAGA 58.406 33.333 0.00 0.00 0.00 2.59
3409 5241 8.777865 TGTAGATCTTTGTGGATTTTCTGTAG 57.222 34.615 0.00 0.00 0.00 2.74
3410 5242 9.739276 ATTGTAGATCTTTGTGGATTTTCTGTA 57.261 29.630 0.00 0.00 0.00 2.74
3411 5243 8.641498 ATTGTAGATCTTTGTGGATTTTCTGT 57.359 30.769 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.