Multiple sequence alignment - TraesCS4A01G051700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G051700 chr4A 100.000 5640 0 0 1 5640 42280409 42274770 0.000000e+00 10416.0
1 TraesCS4A01G051700 chr4A 93.750 64 3 1 1 64 162765587 162765525 1.670000e-15 95.3
2 TraesCS4A01G051700 chr4B 91.397 4603 210 62 386 4924 518637016 518641496 0.000000e+00 6135.0
3 TraesCS4A01G051700 chr4B 92.006 713 34 10 4930 5640 518641551 518642242 0.000000e+00 979.0
4 TraesCS4A01G051700 chr4B 84.880 291 20 10 63 345 518635357 518635631 7.200000e-69 272.0
5 TraesCS4A01G051700 chr4B 90.580 138 9 4 1769 1906 106637127 106636994 4.490000e-41 180.0
6 TraesCS4A01G051700 chr4D 90.369 2492 130 48 494 2920 421525554 421528000 0.000000e+00 3171.0
7 TraesCS4A01G051700 chr4D 92.534 1835 98 16 3118 4929 421528636 421530454 0.000000e+00 2593.0
8 TraesCS4A01G051700 chr4D 92.072 719 30 17 4938 5640 421530520 421531227 0.000000e+00 987.0
9 TraesCS4A01G051700 chr4D 86.242 298 15 11 101 383 421525158 421525444 3.300000e-77 300.0
10 TraesCS4A01G051700 chr6B 87.914 695 45 13 1769 2450 272817850 272817182 0.000000e+00 782.0
11 TraesCS4A01G051700 chr6B 92.901 324 19 4 1769 2092 553748967 553749286 8.560000e-128 468.0
12 TraesCS4A01G051700 chr1A 92.593 324 20 4 1769 2092 26547592 26547273 3.980000e-126 462.0
13 TraesCS4A01G051700 chr5B 92.284 324 21 4 1769 2092 711381526 711381845 1.850000e-124 457.0
14 TraesCS4A01G051700 chr5B 90.580 138 9 4 1769 1906 596643925 596643792 4.490000e-41 180.0
15 TraesCS4A01G051700 chr3B 91.975 324 20 6 1769 2092 350050660 350050977 3.100000e-122 449.0
16 TraesCS4A01G051700 chr3B 90.580 138 9 4 1769 1906 729710178 729710045 4.490000e-41 180.0
17 TraesCS4A01G051700 chr2A 96.774 62 1 1 3 64 738421920 738421980 1.000000e-17 102.0
18 TraesCS4A01G051700 chr7A 95.312 64 2 1 1 64 20594702 20594640 3.600000e-17 100.0
19 TraesCS4A01G051700 chr5A 90.909 66 5 1 5 70 616655923 616655859 2.800000e-13 87.9
20 TraesCS4A01G051700 chr3A 94.737 57 2 1 7 63 491197230 491197285 2.800000e-13 87.9
21 TraesCS4A01G051700 chr3A 92.063 63 4 1 1 63 730192657 730192596 2.800000e-13 87.9
22 TraesCS4A01G051700 chr7D 91.935 62 4 1 2 63 549510242 549510302 1.010000e-12 86.1
23 TraesCS4A01G051700 chr7D 90.625 64 5 1 1 64 312551140 312551202 3.620000e-12 84.2
24 TraesCS4A01G051700 chr1D 91.803 61 4 1 4 64 435256618 435256677 3.620000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G051700 chr4A 42274770 42280409 5639 True 10416.00 10416 100.000000 1 5640 1 chr4A.!!$R1 5639
1 TraesCS4A01G051700 chr4B 518635357 518642242 6885 False 2462.00 6135 89.427667 63 5640 3 chr4B.!!$F1 5577
2 TraesCS4A01G051700 chr4D 421525158 421531227 6069 False 1762.75 3171 90.304250 101 5640 4 chr4D.!!$F1 5539
3 TraesCS4A01G051700 chr6B 272817182 272817850 668 True 782.00 782 87.914000 1769 2450 1 chr6B.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 266 0.034380 AGGCTCGTAGTAGCAGGTCA 60.034 55.0 0.00 0.0 44.64 4.02 F
899 2292 0.170116 GACTGAGAGAGAGCACACCG 59.830 60.0 0.00 0.0 0.00 4.94 F
1235 2629 0.108756 GTGCCTCCTAACTGACGGAC 60.109 60.0 0.00 0.0 0.00 4.79 F
1255 2649 0.249615 TCACTCACTGACTGCTGCAC 60.250 55.0 0.00 0.0 0.00 4.57 F
2111 3544 0.593128 AGTGGCTCAACAATTGCGTC 59.407 50.0 5.05 0.0 0.00 5.19 F
2880 4351 1.168714 ATCAAAAGACAGCTTCCGGC 58.831 50.0 0.00 0.0 42.19 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1235 2629 0.033090 TGCAGCAGTCAGTGAGTGAG 59.967 55.0 28.46 20.28 35.20 3.51 R
1949 3382 0.248054 CAACACACTTGTCGCACACC 60.248 55.0 0.00 0.00 33.55 4.16 R
2080 3513 0.389687 GAGCCACTGTGAGAGAGCAC 60.390 60.0 9.86 0.00 39.22 4.40 R
2421 3869 0.465460 TTCCTGACAACCACTGCACC 60.465 55.0 0.00 0.00 0.00 5.01 R
3018 4646 2.160721 AGGAGATGGTCACCGTATGT 57.839 50.0 0.00 0.00 32.07 2.29 R
4719 6654 0.185901 TTTCCCCAGCTTTGCTCTGT 59.814 50.0 0.00 0.00 36.40 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 1.679139 CAAAAGCTGGTGGTGTCTGA 58.321 50.000 0.00 0.00 0.00 3.27
98 99 1.334869 CAAAAGCTGGTGGTGTCTGAC 59.665 52.381 0.00 0.00 0.00 3.51
99 100 0.839946 AAAGCTGGTGGTGTCTGACT 59.160 50.000 9.51 0.00 0.00 3.41
100 101 0.107456 AAGCTGGTGGTGTCTGACTG 59.893 55.000 9.51 0.00 0.00 3.51
101 102 1.050988 AGCTGGTGGTGTCTGACTGT 61.051 55.000 9.51 0.00 0.00 3.55
102 103 0.601311 GCTGGTGGTGTCTGACTGTC 60.601 60.000 9.51 0.00 0.00 3.51
103 104 1.043816 CTGGTGGTGTCTGACTGTCT 58.956 55.000 9.51 0.00 0.00 3.41
104 105 0.752658 TGGTGGTGTCTGACTGTCTG 59.247 55.000 9.51 8.83 0.00 3.51
243 257 0.953003 GCGAGGAATAGGCTCGTAGT 59.047 55.000 0.00 0.00 41.94 2.73
247 261 3.147629 GAGGAATAGGCTCGTAGTAGCA 58.852 50.000 0.00 0.00 44.64 3.49
248 262 3.150767 AGGAATAGGCTCGTAGTAGCAG 58.849 50.000 0.00 0.00 44.64 4.24
250 264 2.660670 ATAGGCTCGTAGTAGCAGGT 57.339 50.000 0.00 0.00 44.64 4.00
251 265 1.964552 TAGGCTCGTAGTAGCAGGTC 58.035 55.000 0.00 0.00 44.64 3.85
252 266 0.034380 AGGCTCGTAGTAGCAGGTCA 60.034 55.000 0.00 0.00 44.64 4.02
253 267 1.033574 GGCTCGTAGTAGCAGGTCAT 58.966 55.000 0.00 0.00 44.64 3.06
254 268 1.269309 GGCTCGTAGTAGCAGGTCATG 60.269 57.143 0.00 0.00 44.64 3.07
257 271 2.683362 CTCGTAGTAGCAGGTCATGTGA 59.317 50.000 0.00 0.00 0.00 3.58
326 342 2.798976 TGTCTGCCATGCTTTGTTTC 57.201 45.000 0.00 0.00 0.00 2.78
338 354 2.550180 GCTTTGTTTCTCTGTCCACTCC 59.450 50.000 0.00 0.00 0.00 3.85
352 368 4.598257 CTCCGACGGAGCACATTT 57.402 55.556 29.77 0.00 43.29 2.32
353 369 2.840974 CTCCGACGGAGCACATTTT 58.159 52.632 29.77 0.00 43.29 1.82
355 371 1.659098 CTCCGACGGAGCACATTTTAC 59.341 52.381 29.77 0.00 43.29 2.01
356 372 0.368907 CCGACGGAGCACATTTTACG 59.631 55.000 8.64 0.00 0.00 3.18
371 1717 8.995906 GCACATTTTACGTAGTACAATTTGATC 58.004 33.333 2.79 0.00 45.76 2.92
383 1729 5.490139 ACAATTTGATCATGGATCACGAC 57.510 39.130 8.34 0.00 46.87 4.34
384 1730 5.188434 ACAATTTGATCATGGATCACGACT 58.812 37.500 8.34 0.00 46.87 4.18
400 1778 0.533032 GACTCAAGGTTCCTCTCCGG 59.467 60.000 0.00 0.00 0.00 5.14
429 1807 1.523258 CTGGCCATCTTCTCTGCGG 60.523 63.158 5.51 0.00 0.00 5.69
504 1882 0.532862 ACGGTGCAGACAAAGGTCAG 60.533 55.000 0.00 0.00 46.80 3.51
737 2120 1.372997 CCATTATCGGAGGTCGGCG 60.373 63.158 0.00 0.00 39.77 6.46
749 2132 1.974875 GTCGGCGAAACCCCCATTT 60.975 57.895 12.92 0.00 33.26 2.32
761 2154 0.468029 CCCCATTTCCATCCCCTTCG 60.468 60.000 0.00 0.00 0.00 3.79
779 2172 1.594021 GCCGGCCAAAAACAACCAG 60.594 57.895 18.11 0.00 0.00 4.00
798 2191 5.961272 ACCAGACAAGTAACAAAAACCAAG 58.039 37.500 0.00 0.00 0.00 3.61
899 2292 0.170116 GACTGAGAGAGAGCACACCG 59.830 60.000 0.00 0.00 0.00 4.94
900 2293 0.538516 ACTGAGAGAGAGCACACCGT 60.539 55.000 0.00 0.00 0.00 4.83
910 2304 0.902984 AGCACACCGTACCAGATGGA 60.903 55.000 5.72 0.00 37.69 3.41
982 2376 2.245438 CTCCTCCCCGGACAAGAAGC 62.245 65.000 0.73 0.00 36.69 3.86
992 2386 0.952984 GACAAGAAGCAGAAGCCGCT 60.953 55.000 0.00 0.00 43.56 5.52
1203 2597 1.304464 CCCCTCCCCAGCTTTCAAC 60.304 63.158 0.00 0.00 0.00 3.18
1205 2599 0.610232 CCCTCCCCAGCTTTCAACAG 60.610 60.000 0.00 0.00 0.00 3.16
1206 2600 0.401738 CCTCCCCAGCTTTCAACAGA 59.598 55.000 0.00 0.00 0.00 3.41
1207 2601 1.005215 CCTCCCCAGCTTTCAACAGAT 59.995 52.381 0.00 0.00 0.00 2.90
1209 2603 1.004745 TCCCCAGCTTTCAACAGATCC 59.995 52.381 0.00 0.00 0.00 3.36
1211 2605 1.089920 CCAGCTTTCAACAGATCCGG 58.910 55.000 0.00 0.00 0.00 5.14
1212 2606 1.611673 CCAGCTTTCAACAGATCCGGT 60.612 52.381 0.00 0.00 0.00 5.28
1213 2607 1.734465 CAGCTTTCAACAGATCCGGTC 59.266 52.381 0.00 0.00 0.00 4.79
1214 2608 1.087501 GCTTTCAACAGATCCGGTCC 58.912 55.000 0.00 0.00 0.00 4.46
1215 2609 1.359848 CTTTCAACAGATCCGGTCCG 58.640 55.000 3.60 3.60 0.00 4.79
1228 2622 1.988406 GGTCCGGTGCCTCCTAACT 60.988 63.158 0.00 0.00 0.00 2.24
1231 2625 1.218316 CCGGTGCCTCCTAACTGAC 59.782 63.158 0.00 0.00 0.00 3.51
1232 2626 1.153823 CGGTGCCTCCTAACTGACG 60.154 63.158 0.00 0.00 0.00 4.35
1233 2627 1.218316 GGTGCCTCCTAACTGACGG 59.782 63.158 0.00 0.00 0.00 4.79
1234 2628 1.255667 GGTGCCTCCTAACTGACGGA 61.256 60.000 0.00 0.00 0.00 4.69
1235 2629 0.108756 GTGCCTCCTAACTGACGGAC 60.109 60.000 0.00 0.00 0.00 4.79
1237 2631 0.456628 GCCTCCTAACTGACGGACTC 59.543 60.000 0.00 0.00 0.00 3.36
1242 2636 2.160205 CCTAACTGACGGACTCACTCA 58.840 52.381 0.00 0.00 0.00 3.41
1244 2638 1.693627 AACTGACGGACTCACTCACT 58.306 50.000 0.00 0.00 0.00 3.41
1246 2640 1.239347 CTGACGGACTCACTCACTGA 58.761 55.000 0.00 0.00 0.00 3.41
1248 2642 1.240256 GACGGACTCACTCACTGACT 58.760 55.000 0.00 0.00 0.00 3.41
1250 2644 0.387878 CGGACTCACTCACTGACTGC 60.388 60.000 0.00 0.00 0.00 4.40
1255 2649 0.249615 TCACTCACTGACTGCTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
1261 2655 1.068748 CACTGACTGCTGCACCAAATC 60.069 52.381 0.00 0.00 0.00 2.17
1262 2656 1.241165 CTGACTGCTGCACCAAATCA 58.759 50.000 0.00 0.00 0.00 2.57
1392 2786 4.394712 CGGCAGTCCCACTCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
1404 2804 1.201429 ACTCCCACTCCCACATGGAC 61.201 60.000 0.00 0.00 38.61 4.02
1584 2984 3.940221 AGCATTCTGAAGAGAACATGAGC 59.060 43.478 0.00 0.00 41.12 4.26
1664 3073 4.078537 TCCGGCATATCCAACATTATTGG 58.921 43.478 0.00 0.00 40.87 3.16
1677 3087 3.932089 ACATTATTGGGCAATTTCGCAAC 59.068 39.130 9.58 0.00 40.81 4.17
1678 3088 3.667497 TTATTGGGCAATTTCGCAACA 57.333 38.095 9.58 0.00 40.81 3.33
1807 3240 4.253685 ACATACAAGATGGTGTGCAGTAC 58.746 43.478 0.00 0.00 33.70 2.73
1808 3241 4.020218 ACATACAAGATGGTGTGCAGTACT 60.020 41.667 0.00 0.00 33.70 2.73
1809 3242 5.186992 ACATACAAGATGGTGTGCAGTACTA 59.813 40.000 0.00 0.00 33.70 1.82
1835 3268 9.410556 AGTTTGAATCAAATGTTATTGCTACAC 57.589 29.630 11.87 0.00 35.74 2.90
1841 3274 7.843490 TCAAATGTTATTGCTACACTAGGTC 57.157 36.000 0.00 0.00 0.00 3.85
1913 3346 6.474819 TGTCATTACAAACCTTCGTATGTG 57.525 37.500 0.00 0.00 30.91 3.21
1949 3382 3.503363 TGAAGAACAGTAAGCATTGCAGG 59.497 43.478 11.91 0.00 30.97 4.85
2080 3513 4.034048 CGTTCCTATTTTCCCTGATGTTCG 59.966 45.833 0.00 0.00 0.00 3.95
2111 3544 0.593128 AGTGGCTCAACAATTGCGTC 59.407 50.000 5.05 0.00 0.00 5.19
2152 3585 7.693969 AAGGGTTCTTCATTCTAATGTCTTG 57.306 36.000 2.80 0.00 37.65 3.02
2207 3640 3.274288 GAGTTGACCACAATGGGATCTC 58.726 50.000 0.00 0.00 43.37 2.75
2302 3748 6.944862 AGATGGGGAAATCATAACTTCATAGC 59.055 38.462 0.00 0.00 0.00 2.97
2403 3851 2.224523 TGACAGGTCTCCATGGTTTGTC 60.225 50.000 12.58 17.52 35.31 3.18
2421 3869 2.567497 CCACCTTGGGCAGCTTGTG 61.567 63.158 0.00 0.00 32.67 3.33
2552 4000 6.074356 GCATTTGTAATTGTTGTGGTGAGTTC 60.074 38.462 0.00 0.00 0.00 3.01
2746 4215 6.112058 ACTTCTGTGCTTCCATATTCTTCTC 58.888 40.000 0.00 0.00 0.00 2.87
2792 4261 2.105477 ACTGTCACTGAAGCTGTGGATT 59.895 45.455 3.11 0.00 34.75 3.01
2879 4350 3.253188 TGAAATCAAAAGACAGCTTCCGG 59.747 43.478 0.00 0.00 31.82 5.14
2880 4351 1.168714 ATCAAAAGACAGCTTCCGGC 58.831 50.000 0.00 0.00 42.19 6.13
2916 4388 4.696402 ACATGTTTGGCCATAATTTTGCTG 59.304 37.500 6.09 0.00 0.00 4.41
2923 4395 3.125658 GGCCATAATTTTGCTGTTGCTTG 59.874 43.478 0.00 0.00 40.48 4.01
2924 4396 3.125658 GCCATAATTTTGCTGTTGCTTGG 59.874 43.478 0.00 0.00 40.48 3.61
2945 4573 4.344102 TGGTCCTTACTTCCATCTAATCCG 59.656 45.833 0.00 0.00 0.00 4.18
2947 4575 5.279056 GGTCCTTACTTCCATCTAATCCGAG 60.279 48.000 0.00 0.00 0.00 4.63
2954 4582 2.887783 TCCATCTAATCCGAGACAGAGC 59.112 50.000 0.00 0.00 0.00 4.09
3018 4646 6.238621 CGGCATATTTGTGGCTAATAAGACAA 60.239 38.462 0.00 0.00 44.38 3.18
3021 4649 8.137437 GCATATTTGTGGCTAATAAGACAACAT 58.863 33.333 0.00 0.00 44.38 2.71
3052 4680 7.174946 TGACCATCTCCTTTAACTGAATTCAAC 59.825 37.037 9.88 0.00 0.00 3.18
3111 4739 6.468333 AATATAGCATGCACACAATTTCCA 57.532 33.333 21.98 0.00 0.00 3.53
3112 4740 4.804868 ATAGCATGCACACAATTTCCAA 57.195 36.364 21.98 0.00 0.00 3.53
3124 4752 5.757808 ACACAATTTCCAAAACCTGTTATGC 59.242 36.000 0.00 0.00 0.00 3.14
3129 4757 4.799564 TCCAAAACCTGTTATGCCATTC 57.200 40.909 0.00 0.00 0.00 2.67
3171 5086 9.883142 TTGTTCATTTTAACATGTCTTTTTCCT 57.117 25.926 0.00 0.00 39.04 3.36
3412 5330 6.712547 GGTTATTCCTTGAAGATCAGGTATGG 59.287 42.308 0.00 0.00 0.00 2.74
3413 5331 7.420214 GGTTATTCCTTGAAGATCAGGTATGGA 60.420 40.741 0.00 0.00 0.00 3.41
3414 5332 5.359194 TTCCTTGAAGATCAGGTATGGAC 57.641 43.478 0.00 0.00 0.00 4.02
3436 5356 5.996644 ACCACAATAATCCATTTCTACCGA 58.003 37.500 0.00 0.00 0.00 4.69
3455 5375 8.322828 TCTACCGAGAGCTATAGATAATCAAGT 58.677 37.037 3.21 2.91 0.00 3.16
3483 5403 4.186926 CACAGATCCTGGATGTGTTAGTG 58.813 47.826 30.50 18.61 42.55 2.74
3540 5468 3.191371 GGTCTGGTTCGCATCAATTTTCT 59.809 43.478 0.00 0.00 0.00 2.52
3632 5560 9.881649 CTACTGCCAGATATATAATGTGATTGT 57.118 33.333 0.00 0.00 0.00 2.71
3730 5662 2.357009 CCCAGCATGTTGTCAGATTAGC 59.643 50.000 8.84 0.00 0.00 3.09
3866 5798 9.209175 AGCTTAACTAGTATTGAACAAGAAGTG 57.791 33.333 0.00 0.00 0.00 3.16
3871 5803 8.535690 ACTAGTATTGAACAAGAAGTGCTAAC 57.464 34.615 0.00 0.00 0.00 2.34
3884 5816 8.725148 CAAGAAGTGCTAACAAATATGAAGACT 58.275 33.333 0.00 0.00 0.00 3.24
3901 5833 5.122554 TGAAGACTTTTTCAAACACGTGCTA 59.877 36.000 17.22 0.00 34.32 3.49
3909 5841 5.621197 TTCAAACACGTGCTAATGCTTAT 57.379 34.783 17.22 0.00 40.48 1.73
3910 5842 5.216566 TCAAACACGTGCTAATGCTTATC 57.783 39.130 17.22 0.00 40.48 1.75
4135 6067 3.575256 TGAAGCCAATTGCAAGACAAGAT 59.425 39.130 4.94 0.00 42.87 2.40
4199 6131 1.217916 ACTCTCTCTCGATCCCCTCA 58.782 55.000 0.00 0.00 0.00 3.86
4210 6142 2.334023 GATCCCCTCACAAGGCTATCT 58.666 52.381 0.00 0.00 41.85 1.98
4334 6266 1.599240 GCATCCTCCAGAATCGCCC 60.599 63.158 0.00 0.00 0.00 6.13
4363 6295 1.198767 CTGAGAGCAGCTTCGATTCG 58.801 55.000 0.00 0.00 34.95 3.34
4456 6391 0.109086 AGAGCCACATCGAGTTCACG 60.109 55.000 0.00 0.00 0.00 4.35
4631 6566 2.288213 GGGTTTCTTAACAACAGCAGGC 60.288 50.000 0.00 0.00 35.92 4.85
4632 6567 2.604614 GGTTTCTTAACAACAGCAGGCG 60.605 50.000 0.00 0.00 35.92 5.52
4660 6595 6.295011 GCTAGTTATATGTGCTCATCTGACCT 60.295 42.308 4.19 0.00 35.70 3.85
4689 6624 1.079127 TAGGAAGAAGCTGCGTGGC 60.079 57.895 0.00 0.00 0.00 5.01
4697 6632 3.124921 GCTGCGTGGCGTTGGTAT 61.125 61.111 0.00 0.00 0.00 2.73
4702 6637 1.079405 CGTGGCGTTGGTATCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
4709 6644 2.888594 CGTTGGTATCTGGTGAATCGT 58.111 47.619 0.00 0.00 0.00 3.73
4711 6646 3.062099 CGTTGGTATCTGGTGAATCGTTG 59.938 47.826 0.00 0.00 0.00 4.10
4719 6654 3.118445 TCTGGTGAATCGTTGGCATATGA 60.118 43.478 6.97 0.00 0.00 2.15
4735 6670 0.323178 ATGACAGAGCAAAGCTGGGG 60.323 55.000 0.00 0.00 39.88 4.96
4864 6799 1.919839 GCATTGTGGTGTGTTTCGACG 60.920 52.381 0.00 0.00 0.00 5.12
4909 6847 9.809096 TTCAGTAGAAATTGTCTGATGATCTAC 57.191 33.333 0.00 0.00 37.12 2.59
4935 6922 2.642139 TACCGCTCGTCTTTACCTTG 57.358 50.000 0.00 0.00 0.00 3.61
4956 6951 0.676466 CTGCCAATCGGTTGCTGGTA 60.676 55.000 1.86 0.00 33.90 3.25
5014 7011 3.173599 CAAACAATGGCGCTACTGAATG 58.826 45.455 9.81 3.43 0.00 2.67
5034 7031 2.166254 TGCTGAATCATACGAGCACAGA 59.834 45.455 0.00 0.00 36.54 3.41
5050 7047 1.250328 CAGAGCCACATTCCAGCAAA 58.750 50.000 0.00 0.00 0.00 3.68
5071 7068 4.613925 ACAAAGACTTCTCATCAGAGCA 57.386 40.909 0.00 0.00 41.81 4.26
5072 7069 4.314121 ACAAAGACTTCTCATCAGAGCAC 58.686 43.478 0.00 0.00 41.81 4.40
5073 7070 4.202295 ACAAAGACTTCTCATCAGAGCACA 60.202 41.667 0.00 0.00 41.81 4.57
5074 7071 4.613925 AAGACTTCTCATCAGAGCACAA 57.386 40.909 0.00 0.00 41.81 3.33
5075 7072 4.613925 AGACTTCTCATCAGAGCACAAA 57.386 40.909 0.00 0.00 41.81 2.83
5076 7073 5.163281 AGACTTCTCATCAGAGCACAAAT 57.837 39.130 0.00 0.00 41.81 2.32
5122 7119 1.851658 CGCCAAACACAAAAAGAGGG 58.148 50.000 0.00 0.00 0.00 4.30
5127 7134 4.837972 CCAAACACAAAAAGAGGGGAAAA 58.162 39.130 0.00 0.00 0.00 2.29
5132 7139 4.405680 ACACAAAAAGAGGGGAAAAAGAGG 59.594 41.667 0.00 0.00 0.00 3.69
5201 7210 6.839124 ATTTCAGTTCCAGCACATATTTGA 57.161 33.333 0.00 0.00 0.00 2.69
5257 7266 2.357009 AGCAAACACAAGCTCAAGACTG 59.643 45.455 0.00 0.00 36.00 3.51
5266 7275 2.603021 AGCTCAAGACTGGAGAGAACA 58.397 47.619 11.33 0.00 34.24 3.18
5305 7314 6.377429 TGAACATAAGTACAGAAGAGACGGAT 59.623 38.462 0.00 0.00 0.00 4.18
5360 7371 7.327275 CCTCTACAGCTACATATTTGAATCGTC 59.673 40.741 0.00 0.00 0.00 4.20
5434 7445 6.310941 TCTTGGTCTTTGATAAAACCATCCA 58.689 36.000 0.00 0.00 41.23 3.41
5477 7488 3.746492 CAGTCACCAGTAAGTAAACAGGC 59.254 47.826 0.00 0.00 29.43 4.85
5488 7499 3.230976 AGTAAACAGGCAAAGGGAAAGG 58.769 45.455 0.00 0.00 0.00 3.11
5553 7564 5.972107 AAAAACTTCAGCTGCTACATCAT 57.028 34.783 9.47 0.00 0.00 2.45
5571 7582 5.050769 ACATCATAAGAAACATAGCGCGAAG 60.051 40.000 12.10 0.00 0.00 3.79
5623 7634 1.308998 ACGGTCAAGGAACTGCAAAG 58.691 50.000 0.00 0.00 40.86 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.462606 AGGAGAAACGAATTCCTTATTTAACAT 57.537 29.630 0.00 0.00 38.13 2.71
41 42 8.857694 AGGAGAAACGAATTCCTTATTTAACA 57.142 30.769 0.00 0.00 38.13 2.41
62 63 1.331214 TTTGGCTGCCTCAAAAGGAG 58.669 50.000 21.03 0.00 46.67 3.69
63 64 1.786937 TTTTGGCTGCCTCAAAAGGA 58.213 45.000 21.03 0.00 46.67 3.36
97 98 4.427661 GCCGAGCGAGCAGACAGT 62.428 66.667 0.00 0.00 0.00 3.55
98 99 4.127040 AGCCGAGCGAGCAGACAG 62.127 66.667 0.00 0.00 0.00 3.51
99 100 4.121669 GAGCCGAGCGAGCAGACA 62.122 66.667 0.00 0.00 0.00 3.41
100 101 4.121669 TGAGCCGAGCGAGCAGAC 62.122 66.667 0.00 0.00 0.00 3.51
101 102 3.819920 CTGAGCCGAGCGAGCAGA 61.820 66.667 0.00 0.00 32.22 4.26
124 125 1.464189 GCACGCACGGAATCTCTTTTC 60.464 52.381 0.00 0.00 0.00 2.29
177 180 3.072468 CATGCAGGCTTGGGTGGG 61.072 66.667 0.00 0.00 0.00 4.61
243 257 1.067669 GCGATCTCACATGACCTGCTA 59.932 52.381 0.00 0.00 0.00 3.49
247 261 0.179089 GCAGCGATCTCACATGACCT 60.179 55.000 0.00 0.00 0.00 3.85
248 262 1.485838 CGCAGCGATCTCACATGACC 61.486 60.000 9.98 0.00 0.00 4.02
250 264 0.386838 ATCGCAGCGATCTCACATGA 59.613 50.000 24.88 0.00 43.45 3.07
251 265 1.215244 AATCGCAGCGATCTCACATG 58.785 50.000 29.89 0.00 46.30 3.21
252 266 1.945387 AAATCGCAGCGATCTCACAT 58.055 45.000 29.89 11.17 46.30 3.21
253 267 1.660607 GAAAATCGCAGCGATCTCACA 59.339 47.619 29.89 0.97 46.30 3.58
254 268 1.004504 GGAAAATCGCAGCGATCTCAC 60.005 52.381 29.89 19.61 46.30 3.51
257 271 1.576356 GAGGAAAATCGCAGCGATCT 58.424 50.000 29.89 21.73 46.30 2.75
326 342 1.649390 CTCCGTCGGAGTGGACAGAG 61.649 65.000 29.66 5.10 44.25 3.35
338 354 1.065358 ACGTAAAATGTGCTCCGTCG 58.935 50.000 0.00 0.00 0.00 5.12
345 361 8.889849 ATCAAATTGTACTACGTAAAATGTGC 57.110 30.769 0.00 0.00 33.31 4.57
350 366 9.438228 TCCATGATCAAATTGTACTACGTAAAA 57.562 29.630 0.00 0.00 0.00 1.52
351 367 9.607988 ATCCATGATCAAATTGTACTACGTAAA 57.392 29.630 0.00 0.00 0.00 2.01
352 368 9.256477 GATCCATGATCAAATTGTACTACGTAA 57.744 33.333 0.00 0.00 38.77 3.18
353 369 8.417884 TGATCCATGATCAAATTGTACTACGTA 58.582 33.333 0.00 0.00 44.70 3.57
355 371 7.713764 TGATCCATGATCAAATTGTACTACG 57.286 36.000 0.00 0.00 44.70 3.51
371 1717 2.680312 ACCTTGAGTCGTGATCCATG 57.320 50.000 0.00 0.00 0.00 3.66
383 1729 1.219393 GCCGGAGAGGAACCTTGAG 59.781 63.158 5.05 0.00 45.00 3.02
384 1730 2.646175 CGCCGGAGAGGAACCTTGA 61.646 63.158 5.05 0.00 45.00 3.02
400 1778 1.435408 GATGGCCAGAAAGCTCTCGC 61.435 60.000 13.05 0.00 35.25 5.03
411 1789 1.523258 CCGCAGAGAAGATGGCCAG 60.523 63.158 13.05 0.00 0.00 4.85
481 1859 1.507141 CCTTTGTCTGCACCGTGGTC 61.507 60.000 0.00 0.00 0.00 4.02
482 1860 1.525995 CCTTTGTCTGCACCGTGGT 60.526 57.895 0.00 0.00 0.00 4.16
483 1861 1.507141 GACCTTTGTCTGCACCGTGG 61.507 60.000 0.00 0.00 38.53 4.94
484 1862 0.813610 TGACCTTTGTCTGCACCGTG 60.814 55.000 0.00 0.00 42.28 4.94
485 1863 0.532862 CTGACCTTTGTCTGCACCGT 60.533 55.000 0.00 0.00 42.28 4.83
486 1864 1.230635 CCTGACCTTTGTCTGCACCG 61.231 60.000 0.00 0.00 42.28 4.94
487 1865 0.108585 TCCTGACCTTTGTCTGCACC 59.891 55.000 0.00 0.00 42.28 5.01
504 1882 2.914059 TGCTTTTATTACTCGCCCTCC 58.086 47.619 0.00 0.00 0.00 4.30
631 2012 1.227002 GGAGAATGACGACGGAGGC 60.227 63.158 0.00 0.00 0.00 4.70
632 2013 1.437986 GGGAGAATGACGACGGAGG 59.562 63.158 0.00 0.00 0.00 4.30
737 2120 1.496060 GGGATGGAAATGGGGGTTTC 58.504 55.000 0.00 0.00 37.37 2.78
761 2154 1.594021 CTGGTTGTTTTTGGCCGGC 60.594 57.895 21.18 21.18 0.00 6.13
779 2172 5.006153 AGGCTTGGTTTTTGTTACTTGTC 57.994 39.130 0.00 0.00 0.00 3.18
798 2191 2.687805 GGGGAGCGACGAAAAAGGC 61.688 63.158 0.00 0.00 0.00 4.35
899 2292 0.103208 CGAGCAGGTCCATCTGGTAC 59.897 60.000 0.00 0.00 44.35 3.34
900 2293 1.676678 GCGAGCAGGTCCATCTGGTA 61.677 60.000 0.00 0.00 44.35 3.25
992 2386 2.360191 GCTTCCTCATTGCCCCCA 59.640 61.111 0.00 0.00 0.00 4.96
1163 2557 2.439245 GGTTGGGGAAGGTGGGTC 59.561 66.667 0.00 0.00 0.00 4.46
1209 2603 3.072468 TTAGGAGGCACCGGACCG 61.072 66.667 9.46 6.99 44.74 4.79
1211 2605 1.218316 CAGTTAGGAGGCACCGGAC 59.782 63.158 9.46 0.00 44.74 4.79
1212 2606 1.077805 TCAGTTAGGAGGCACCGGA 59.922 57.895 9.46 0.00 44.74 5.14
1213 2607 1.218316 GTCAGTTAGGAGGCACCGG 59.782 63.158 0.00 0.00 44.74 5.28
1214 2608 1.153823 CGTCAGTTAGGAGGCACCG 60.154 63.158 0.00 0.00 44.74 4.94
1215 2609 1.218316 CCGTCAGTTAGGAGGCACC 59.782 63.158 0.00 0.00 39.35 5.01
1216 2610 0.108756 GTCCGTCAGTTAGGAGGCAC 60.109 60.000 0.00 0.00 37.18 5.01
1217 2611 0.251653 AGTCCGTCAGTTAGGAGGCA 60.252 55.000 0.00 0.00 37.18 4.75
1218 2612 0.456628 GAGTCCGTCAGTTAGGAGGC 59.543 60.000 0.00 0.00 37.18 4.70
1219 2613 1.473278 GTGAGTCCGTCAGTTAGGAGG 59.527 57.143 0.00 0.00 37.18 4.30
1220 2614 2.420722 GAGTGAGTCCGTCAGTTAGGAG 59.579 54.545 0.00 0.00 39.11 3.69
1221 2615 2.224695 TGAGTGAGTCCGTCAGTTAGGA 60.225 50.000 0.00 0.00 39.11 2.94
1222 2616 2.095161 GTGAGTGAGTCCGTCAGTTAGG 60.095 54.545 0.00 0.00 39.11 2.69
1223 2617 2.814919 AGTGAGTGAGTCCGTCAGTTAG 59.185 50.000 0.00 0.00 39.11 2.34
1224 2618 2.552743 CAGTGAGTGAGTCCGTCAGTTA 59.447 50.000 0.00 0.00 39.11 2.24
1228 2622 0.952280 GTCAGTGAGTGAGTCCGTCA 59.048 55.000 0.00 0.00 35.13 4.35
1231 2625 0.387878 GCAGTCAGTGAGTGAGTCCG 60.388 60.000 28.46 4.42 36.62 4.79
1232 2626 0.965439 AGCAGTCAGTGAGTGAGTCC 59.035 55.000 28.46 12.59 36.62 3.85
1233 2627 1.934399 GCAGCAGTCAGTGAGTGAGTC 60.934 57.143 28.46 12.91 36.62 3.36
1234 2628 0.033228 GCAGCAGTCAGTGAGTGAGT 59.967 55.000 28.46 13.60 39.67 3.41
1235 2629 0.033090 TGCAGCAGTCAGTGAGTGAG 59.967 55.000 28.46 20.28 35.20 3.51
1237 2631 1.226686 GGTGCAGCAGTCAGTGAGTG 61.227 60.000 21.57 21.57 36.20 3.51
1242 2636 1.242076 GATTTGGTGCAGCAGTCAGT 58.758 50.000 19.25 0.81 0.00 3.41
1244 2638 0.953727 GTGATTTGGTGCAGCAGTCA 59.046 50.000 23.66 23.66 0.00 3.41
1246 2640 0.178981 AGGTGATTTGGTGCAGCAGT 60.179 50.000 19.25 11.96 35.12 4.40
1248 2642 1.808531 GCAGGTGATTTGGTGCAGCA 61.809 55.000 15.99 15.99 35.91 4.41
1250 2644 2.343506 TGCAGGTGATTTGGTGCAG 58.656 52.632 0.00 0.00 40.93 4.41
1255 2649 3.009723 ACGTAATCTGCAGGTGATTTGG 58.990 45.455 15.13 5.01 35.90 3.28
1261 2655 1.014044 ACGCACGTAATCTGCAGGTG 61.014 55.000 15.13 14.30 34.00 4.00
1262 2656 0.736325 GACGCACGTAATCTGCAGGT 60.736 55.000 15.13 2.68 34.00 4.00
1404 2804 3.019003 ATGAAGGCCGTGGTCCGAG 62.019 63.158 0.00 0.00 39.56 4.63
1584 2984 0.539051 AGAAGAACATGCCCTCCTCG 59.461 55.000 0.00 0.00 0.00 4.63
1664 3073 2.134346 ACAACATGTTGCGAAATTGCC 58.866 42.857 33.23 0.00 44.03 4.52
1678 3088 5.596361 TGGTGGAAACATGTAAAGACAACAT 59.404 36.000 0.00 0.00 46.14 2.71
1809 3242 9.410556 GTGTAGCAATAACATTTGATTCAAACT 57.589 29.630 13.80 6.87 36.13 2.66
1835 3268 2.743126 CCCGTAAGATAGAGCGACCTAG 59.257 54.545 0.00 0.00 43.02 3.02
1841 3274 2.352814 CCATTCCCCGTAAGATAGAGCG 60.353 54.545 0.00 0.00 43.02 5.03
1893 3326 9.272901 CATAAACACATACGAAGGTTTGTAATG 57.727 33.333 0.00 0.17 36.39 1.90
1949 3382 0.248054 CAACACACTTGTCGCACACC 60.248 55.000 0.00 0.00 33.55 4.16
2080 3513 0.389687 GAGCCACTGTGAGAGAGCAC 60.390 60.000 9.86 0.00 39.22 4.40
2111 3544 2.817844 CCCTTTGTAGTTCCTTTTCCCG 59.182 50.000 0.00 0.00 0.00 5.14
2152 3585 2.224305 ACACTTACCAGGAGAACAGCAC 60.224 50.000 0.00 0.00 0.00 4.40
2283 3728 7.750229 TGATGGCTATGAAGTTATGATTTCC 57.250 36.000 0.00 0.00 0.00 3.13
2302 3748 6.455360 AGTTGGTTGCATAAGTTATGATGG 57.545 37.500 24.11 0.73 38.45 3.51
2403 3851 2.203538 ACAAGCTGCCCAAGGTGG 60.204 61.111 0.00 0.00 36.51 4.61
2421 3869 0.465460 TTCCTGACAACCACTGCACC 60.465 55.000 0.00 0.00 0.00 5.01
2571 4019 3.125316 GCCTCAGTGCAGTAAACATGTAC 59.875 47.826 0.00 0.00 33.96 2.90
2578 4026 2.857186 TCATGCCTCAGTGCAGTAAA 57.143 45.000 0.00 0.00 45.93 2.01
2660 4128 6.148811 GTGCAAGTAGCCTGTAATAAGTCAAA 59.851 38.462 0.00 0.00 44.83 2.69
2663 4131 4.571176 GGTGCAAGTAGCCTGTAATAAGTC 59.429 45.833 0.00 0.00 44.83 3.01
2746 4215 8.233190 GTCTCAAAGTGATTTACCTTCTTGATG 58.767 37.037 0.00 0.00 0.00 3.07
2812 4281 1.628727 CCTCCCCCTCTCCATCTCA 59.371 63.158 0.00 0.00 0.00 3.27
2817 4288 3.368501 CCTCCCTCCCCCTCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
2881 4352 2.283884 CCAAACATGTTTTGCACGGAAC 59.716 45.455 21.10 0.00 0.00 3.62
2882 4353 2.544685 CCAAACATGTTTTGCACGGAA 58.455 42.857 21.10 0.00 0.00 4.30
2883 4354 1.804372 GCCAAACATGTTTTGCACGGA 60.804 47.619 31.58 0.00 39.92 4.69
2884 4355 0.581053 GCCAAACATGTTTTGCACGG 59.419 50.000 31.58 24.21 39.92 4.94
2885 4356 0.581053 GGCCAAACATGTTTTGCACG 59.419 50.000 34.78 19.51 41.35 5.34
2886 4357 1.661341 TGGCCAAACATGTTTTGCAC 58.339 45.000 34.78 26.87 41.35 4.57
2916 4388 2.858745 TGGAAGTAAGGACCAAGCAAC 58.141 47.619 0.00 0.00 0.00 4.17
2923 4395 4.587684 TCGGATTAGATGGAAGTAAGGACC 59.412 45.833 0.00 0.00 0.00 4.46
2924 4396 5.535406 TCTCGGATTAGATGGAAGTAAGGAC 59.465 44.000 0.00 0.00 0.00 3.85
2989 4617 5.590530 ATTAGCCACAAATATGCCGAAAA 57.409 34.783 0.00 0.00 0.00 2.29
3018 4646 2.160721 AGGAGATGGTCACCGTATGT 57.839 50.000 0.00 0.00 32.07 2.29
3021 4649 4.081862 CAGTTAAAGGAGATGGTCACCGTA 60.082 45.833 0.00 0.00 32.07 4.02
3052 4680 9.694520 CAACATACAGATAATTTTCTGACTTCG 57.305 33.333 26.48 14.49 44.88 3.79
3111 4739 5.774690 TCTCTTGAATGGCATAACAGGTTTT 59.225 36.000 0.00 0.00 0.00 2.43
3112 4740 5.324409 TCTCTTGAATGGCATAACAGGTTT 58.676 37.500 0.00 0.00 0.00 3.27
3124 4752 5.987347 ACAAATGCAAACTTCTCTTGAATGG 59.013 36.000 0.00 0.00 0.00 3.16
3129 4757 7.473027 AATGAACAAATGCAAACTTCTCTTG 57.527 32.000 0.00 0.00 0.00 3.02
3253 5171 4.285517 TCTTCTTGCTGATCTTCCTCTTGT 59.714 41.667 0.00 0.00 0.00 3.16
3388 5306 7.442666 GTCCATACCTGATCTTCAAGGAATAAC 59.557 40.741 3.90 0.00 0.00 1.89
3412 5330 6.053005 TCGGTAGAAATGGATTATTGTGGTC 58.947 40.000 0.00 0.00 0.00 4.02
3413 5331 5.996644 TCGGTAGAAATGGATTATTGTGGT 58.003 37.500 0.00 0.00 0.00 4.16
3414 5332 6.288294 TCTCGGTAGAAATGGATTATTGTGG 58.712 40.000 0.00 0.00 0.00 4.17
3416 5334 5.992217 GCTCTCGGTAGAAATGGATTATTGT 59.008 40.000 0.00 0.00 0.00 2.71
3417 5335 6.226787 AGCTCTCGGTAGAAATGGATTATTG 58.773 40.000 0.00 0.00 0.00 1.90
3455 5375 4.074259 CACATCCAGGATCTGTGTTCAAA 58.926 43.478 13.32 0.00 36.41 2.69
3483 5403 3.181484 TGGAGTGCATCATATTTTGCTGC 60.181 43.478 7.85 0.00 45.58 5.25
3540 5468 7.589395 ACGAAACAACAGCACATTATTCATAA 58.411 30.769 0.00 0.00 0.00 1.90
3803 5735 5.878116 GTGCAATACTAACTGTGGGTATTCA 59.122 40.000 12.55 11.31 34.99 2.57
3849 5781 7.801716 TTGTTAGCACTTCTTGTTCAATACT 57.198 32.000 0.00 0.00 0.00 2.12
3852 5784 9.630098 CATATTTGTTAGCACTTCTTGTTCAAT 57.370 29.630 0.00 0.00 0.00 2.57
3871 5803 9.019764 ACGTGTTTGAAAAAGTCTTCATATTTG 57.980 29.630 0.00 0.00 35.31 2.32
3884 5816 4.677584 AGCATTAGCACGTGTTTGAAAAA 58.322 34.783 18.38 1.95 45.49 1.94
4135 6067 0.395173 TGTCGTGGATGATCGGAGGA 60.395 55.000 0.00 0.00 0.00 3.71
4199 6131 0.745845 CCGCTTGCAGATAGCCTTGT 60.746 55.000 3.34 0.00 44.83 3.16
4363 6295 1.685148 GAAATGGGTGGAGATCAGGC 58.315 55.000 0.00 0.00 0.00 4.85
4631 6566 6.307558 CAGATGAGCACATATAACTAGCTTCG 59.692 42.308 0.00 0.00 36.82 3.79
4632 6567 7.328249 GTCAGATGAGCACATATAACTAGCTTC 59.672 40.741 0.00 0.00 36.82 3.86
4660 6595 5.734720 CAGCTTCTTCCTACCATTTCTGTA 58.265 41.667 0.00 0.00 0.00 2.74
4689 6624 2.888594 ACGATTCACCAGATACCAACG 58.111 47.619 0.00 0.00 0.00 4.10
4697 6632 3.118445 TCATATGCCAACGATTCACCAGA 60.118 43.478 0.00 0.00 0.00 3.86
4702 6637 4.122046 CTCTGTCATATGCCAACGATTCA 58.878 43.478 0.00 0.00 0.00 2.57
4709 6644 2.424601 GCTTTGCTCTGTCATATGCCAA 59.575 45.455 0.00 0.00 0.00 4.52
4711 6646 2.033049 CAGCTTTGCTCTGTCATATGCC 59.967 50.000 0.00 0.00 36.40 4.40
4719 6654 0.185901 TTTCCCCAGCTTTGCTCTGT 59.814 50.000 0.00 0.00 36.40 3.41
4849 6784 1.070175 CAATCCGTCGAAACACACCAC 60.070 52.381 0.00 0.00 0.00 4.16
4864 6799 5.105997 ACTGAATTGAGCTTAACTGCAATCC 60.106 40.000 0.00 0.00 34.99 3.01
4909 6847 3.712091 AAAGACGAGCGGTAATAGAGG 57.288 47.619 0.00 0.00 0.00 3.69
4935 6922 3.064324 AGCAACCGATTGGCAGGC 61.064 61.111 0.00 0.09 39.70 4.85
4956 6951 7.005902 TGCCATTGGTAGATCACATCATAATT 58.994 34.615 4.26 0.00 0.00 1.40
4990 6987 1.068333 CAGTAGCGCCATTGTTTGCTT 60.068 47.619 2.29 0.00 38.82 3.91
5014 7011 2.793790 CTCTGTGCTCGTATGATTCAGC 59.206 50.000 0.00 0.00 0.00 4.26
5034 7031 1.412079 TTGTTTGCTGGAATGTGGCT 58.588 45.000 0.00 0.00 0.00 4.75
5050 7047 4.202295 TGTGCTCTGATGAGAAGTCTTTGT 60.202 41.667 0.00 0.00 42.73 2.83
5098 7095 1.592543 CTTTTTGTGTTTGGCGCTTCC 59.407 47.619 7.64 0.00 0.00 3.46
5122 7119 3.328050 TGGTTCTCTCTCCCTCTTTTTCC 59.672 47.826 0.00 0.00 0.00 3.13
5127 7134 2.704190 TGTGGTTCTCTCTCCCTCTT 57.296 50.000 0.00 0.00 0.00 2.85
5132 7139 3.181454 TGGAACTTTGTGGTTCTCTCTCC 60.181 47.826 7.19 0.00 43.43 3.71
5221 7230 3.206642 GTTTGCTTTATTTTTGTGCGCG 58.793 40.909 0.00 0.00 0.00 6.86
5294 7303 4.076394 AGCTACATCCTATCCGTCTCTTC 58.924 47.826 0.00 0.00 0.00 2.87
5305 7314 6.405953 GCTGTTGAAGTAGAAGCTACATCCTA 60.406 42.308 7.29 0.00 0.00 2.94
5360 7371 1.734163 AACTTCATAAGCGAACCCGG 58.266 50.000 0.00 0.00 36.06 5.73
5434 7445 5.163023 ACTGTCCTTTGTAAATTACACCCCT 60.163 40.000 5.19 0.00 38.63 4.79
5477 7488 1.188863 CATCCTGGCCTTTCCCTTTG 58.811 55.000 3.32 0.00 0.00 2.77
5553 7564 3.840468 TCACTTCGCGCTATGTTTCTTA 58.160 40.909 5.56 0.00 0.00 2.10
5571 7582 1.533338 CGAGTGCCGGTGTAGTATCAC 60.533 57.143 1.90 0.00 37.57 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.