Multiple sequence alignment - TraesCS4A01G051400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G051400 chr4A 100.000 5373 0 0 899 6271 42126744 42121372 0.000000e+00 9923.0
1 TraesCS4A01G051400 chr4A 100.000 665 0 0 1 665 42127642 42126978 0.000000e+00 1229.0
2 TraesCS4A01G051400 chr4D 94.500 3673 132 30 1723 5349 421892700 421896348 0.000000e+00 5600.0
3 TraesCS4A01G051400 chr4D 91.934 843 43 11 899 1726 421891503 421892335 0.000000e+00 1157.0
4 TraesCS4A01G051400 chr4D 91.449 573 31 10 5664 6221 421896751 421897320 0.000000e+00 771.0
5 TraesCS4A01G051400 chr4D 89.904 416 9 15 251 665 421890990 421891373 7.260000e-139 505.0
6 TraesCS4A01G051400 chr4D 96.970 231 6 1 5343 5573 421896517 421896746 2.740000e-103 387.0
7 TraesCS4A01G051400 chr4D 92.857 70 4 1 5578 5647 366329963 366329895 4.000000e-17 100.0
8 TraesCS4A01G051400 chr4B 94.303 2159 89 11 3431 5573 518874588 518876728 0.000000e+00 3275.0
9 TraesCS4A01G051400 chr4B 92.703 2083 100 25 900 2968 518871746 518873790 0.000000e+00 2957.0
10 TraesCS4A01G051400 chr4B 94.669 619 22 3 2840 3448 518873789 518874406 0.000000e+00 950.0
11 TraesCS4A01G051400 chr4B 89.209 556 27 18 114 665 518871097 518871623 0.000000e+00 664.0
12 TraesCS4A01G051400 chr4B 85.407 418 50 9 5770 6180 168565643 168565230 2.090000e-114 424.0
13 TraesCS4A01G051400 chr4B 81.412 425 53 20 5768 6180 99577778 99578188 2.180000e-84 324.0
14 TraesCS4A01G051400 chr4B 95.050 101 5 0 5665 5765 518876734 518876834 6.510000e-35 159.0
15 TraesCS4A01G051400 chr3D 84.670 424 49 12 5766 6180 570565865 570566281 5.850000e-110 409.0
16 TraesCS4A01G051400 chr7D 84.382 429 49 12 5768 6180 45815249 45814823 7.570000e-109 405.0
17 TraesCS4A01G051400 chr6B 82.904 427 46 14 5767 6181 658194023 658193612 5.980000e-95 359.0
18 TraesCS4A01G051400 chr6B 90.000 70 5 2 5583 5652 150282686 150282753 8.660000e-14 89.8
19 TraesCS4A01G051400 chr1D 81.295 417 56 17 5777 6183 62690451 62690855 1.010000e-82 318.0
20 TraesCS4A01G051400 chr2A 79.854 412 68 9 5777 6181 70662412 70662815 2.860000e-73 287.0
21 TraesCS4A01G051400 chr5B 79.469 414 73 11 5776 6180 61650307 61649897 3.700000e-72 283.0
22 TraesCS4A01G051400 chr5B 93.103 58 4 0 5578 5635 345349910 345349967 1.120000e-12 86.1
23 TraesCS4A01G051400 chr2B 92.000 75 3 2 5578 5652 765393555 765393626 1.110000e-17 102.0
24 TraesCS4A01G051400 chr1B 91.379 58 4 1 5578 5635 306076876 306076820 1.870000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G051400 chr4A 42121372 42127642 6270 True 5576 9923 100.0000 1 6271 2 chr4A.!!$R1 6270
1 TraesCS4A01G051400 chr4D 421890990 421897320 6330 False 1684 5600 92.9514 251 6221 5 chr4D.!!$F1 5970
2 TraesCS4A01G051400 chr4B 518871097 518876834 5737 False 1601 3275 93.1868 114 5765 5 chr4B.!!$F2 5651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 454 0.036306 ACCATCGTCTCCAACCCAAC 59.964 55.000 0.00 0.0 0.00 3.77 F
1240 1275 0.597637 CTGTCAGGTTCGCTTCGTGT 60.598 55.000 0.00 0.0 0.00 4.49 F
1318 1353 0.106708 GGTGAACTGCCACTGACTGA 59.893 55.000 0.00 0.0 37.24 3.41 F
1572 1607 0.314935 CGCTGTGGTTTGCAGGATTT 59.685 50.000 0.00 0.0 34.73 2.17 F
1713 1748 0.808755 CGGTGTTTTGCATAGGGACC 59.191 55.000 0.00 0.0 0.00 4.46 F
3268 3826 1.668751 GGAAGTTGAACGTGAACTGCA 59.331 47.619 16.77 0.0 33.85 4.41 F
3476 4242 1.673033 CCTTGTCTTGCTGTACCTCCG 60.673 57.143 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1286 0.398318 ACAGGAAGTGAAGTGGAGGC 59.602 55.000 0.00 0.00 0.00 4.70 R
2071 2477 0.899717 GCATGTCTGGCAAGGGGAAA 60.900 55.000 0.00 0.00 0.00 3.13 R
2773 3203 1.133199 AGGTGAAGGAATGGGCAAACA 60.133 47.619 0.00 0.00 0.00 2.83 R
2774 3204 1.546029 GAGGTGAAGGAATGGGCAAAC 59.454 52.381 0.00 0.00 0.00 2.93 R
3634 4400 2.377531 TCCCCCTGGAACCTAAAGAAAC 59.622 50.000 0.00 0.00 37.86 2.78 R
4467 5234 0.698238 AACTGATAAGCCTGGCACCA 59.302 50.000 22.65 11.27 0.00 4.17 R
5394 6344 3.949754 CACATCCAATGCCTTGTACAGAT 59.050 43.478 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.817063 CGCGCAACAGGATTGCCG 62.817 66.667 8.75 7.00 42.10 5.69
18 19 3.737172 GCGCAACAGGATTGCCGT 61.737 61.111 0.30 0.00 42.10 5.68
19 20 2.176546 CGCAACAGGATTGCCGTG 59.823 61.111 6.08 0.00 42.10 4.94
20 21 2.324330 CGCAACAGGATTGCCGTGA 61.324 57.895 6.08 0.00 42.10 4.35
21 22 1.210155 GCAACAGGATTGCCGTGAC 59.790 57.895 0.01 0.00 39.38 3.67
22 23 1.497278 CAACAGGATTGCCGTGACG 59.503 57.895 0.00 0.00 39.96 4.35
23 24 1.070786 AACAGGATTGCCGTGACGT 59.929 52.632 3.64 0.00 39.96 4.34
24 25 1.227999 AACAGGATTGCCGTGACGTG 61.228 55.000 3.64 0.00 39.96 4.49
25 26 1.667830 CAGGATTGCCGTGACGTGT 60.668 57.895 3.64 0.00 39.96 4.49
26 27 1.070786 AGGATTGCCGTGACGTGTT 59.929 52.632 3.64 0.00 39.96 3.32
27 28 1.206578 GGATTGCCGTGACGTGTTG 59.793 57.895 3.64 0.00 0.00 3.33
28 29 1.206578 GATTGCCGTGACGTGTTGG 59.793 57.895 3.64 0.00 0.00 3.77
29 30 1.225376 GATTGCCGTGACGTGTTGGA 61.225 55.000 3.64 0.00 0.00 3.53
30 31 1.227999 ATTGCCGTGACGTGTTGGAG 61.228 55.000 3.64 0.00 0.00 3.86
31 32 3.041940 GCCGTGACGTGTTGGAGG 61.042 66.667 3.64 0.00 0.00 4.30
32 33 3.041940 CCGTGACGTGTTGGAGGC 61.042 66.667 3.64 0.00 0.00 4.70
33 34 3.041940 CGTGACGTGTTGGAGGCC 61.042 66.667 0.00 0.00 0.00 5.19
34 35 3.041940 GTGACGTGTTGGAGGCCG 61.042 66.667 0.00 0.00 0.00 6.13
35 36 4.980805 TGACGTGTTGGAGGCCGC 62.981 66.667 0.00 0.00 0.00 6.53
36 37 4.681978 GACGTGTTGGAGGCCGCT 62.682 66.667 6.40 0.00 0.00 5.52
37 38 4.681978 ACGTGTTGGAGGCCGCTC 62.682 66.667 6.40 0.00 0.00 5.03
38 39 4.680237 CGTGTTGGAGGCCGCTCA 62.680 66.667 6.40 0.00 0.00 4.26
39 40 2.281484 GTGTTGGAGGCCGCTCAA 60.281 61.111 6.40 6.37 0.00 3.02
40 41 2.281484 TGTTGGAGGCCGCTCAAC 60.281 61.111 23.97 23.97 40.59 3.18
41 42 2.281484 GTTGGAGGCCGCTCAACA 60.281 61.111 25.02 7.36 40.11 3.33
42 43 2.032528 TTGGAGGCCGCTCAACAG 59.967 61.111 6.40 0.00 0.00 3.16
43 44 3.551496 TTGGAGGCCGCTCAACAGG 62.551 63.158 6.40 0.00 0.00 4.00
44 45 3.706373 GGAGGCCGCTCAACAGGA 61.706 66.667 6.40 0.00 0.00 3.86
45 46 2.435059 GAGGCCGCTCAACAGGAC 60.435 66.667 0.00 0.00 35.21 3.85
46 47 3.959991 GAGGCCGCTCAACAGGACC 62.960 68.421 0.00 0.00 35.72 4.46
48 49 4.329545 GCCGCTCAACAGGACCCA 62.330 66.667 0.00 0.00 0.00 4.51
49 50 2.429930 CCGCTCAACAGGACCCAA 59.570 61.111 0.00 0.00 0.00 4.12
50 51 1.966451 CCGCTCAACAGGACCCAAC 60.966 63.158 0.00 0.00 0.00 3.77
51 52 1.966451 CGCTCAACAGGACCCAACC 60.966 63.158 0.00 0.00 0.00 3.77
52 53 1.456287 GCTCAACAGGACCCAACCT 59.544 57.895 0.00 0.00 41.43 3.50
53 54 0.178990 GCTCAACAGGACCCAACCTT 60.179 55.000 0.00 0.00 38.32 3.50
54 55 1.754201 GCTCAACAGGACCCAACCTTT 60.754 52.381 0.00 0.00 38.32 3.11
55 56 2.230660 CTCAACAGGACCCAACCTTTC 58.769 52.381 0.00 0.00 38.32 2.62
56 57 1.566703 TCAACAGGACCCAACCTTTCA 59.433 47.619 0.00 0.00 38.32 2.69
57 58 2.024846 TCAACAGGACCCAACCTTTCAA 60.025 45.455 0.00 0.00 38.32 2.69
58 59 2.067365 ACAGGACCCAACCTTTCAAC 57.933 50.000 0.00 0.00 38.32 3.18
59 60 1.286553 ACAGGACCCAACCTTTCAACA 59.713 47.619 0.00 0.00 38.32 3.33
60 61 1.956477 CAGGACCCAACCTTTCAACAG 59.044 52.381 0.00 0.00 38.32 3.16
61 62 1.850345 AGGACCCAACCTTTCAACAGA 59.150 47.619 0.00 0.00 36.86 3.41
62 63 2.243736 AGGACCCAACCTTTCAACAGAA 59.756 45.455 0.00 0.00 36.86 3.02
63 64 3.117131 AGGACCCAACCTTTCAACAGAAT 60.117 43.478 0.00 0.00 36.86 2.40
64 65 4.105697 AGGACCCAACCTTTCAACAGAATA 59.894 41.667 0.00 0.00 36.86 1.75
65 66 4.830600 GGACCCAACCTTTCAACAGAATAA 59.169 41.667 0.00 0.00 0.00 1.40
66 67 5.303333 GGACCCAACCTTTCAACAGAATAAA 59.697 40.000 0.00 0.00 0.00 1.40
67 68 6.156748 ACCCAACCTTTCAACAGAATAAAC 57.843 37.500 0.00 0.00 0.00 2.01
68 69 5.219633 CCCAACCTTTCAACAGAATAAACG 58.780 41.667 0.00 0.00 0.00 3.60
69 70 5.009210 CCCAACCTTTCAACAGAATAAACGA 59.991 40.000 0.00 0.00 0.00 3.85
70 71 6.460399 CCCAACCTTTCAACAGAATAAACGAA 60.460 38.462 0.00 0.00 0.00 3.85
71 72 6.636850 CCAACCTTTCAACAGAATAAACGAAG 59.363 38.462 0.00 0.00 0.00 3.79
72 73 7.414436 CAACCTTTCAACAGAATAAACGAAGA 58.586 34.615 0.00 0.00 0.00 2.87
73 74 7.190920 ACCTTTCAACAGAATAAACGAAGAG 57.809 36.000 0.00 0.00 0.00 2.85
74 75 6.204882 ACCTTTCAACAGAATAAACGAAGAGG 59.795 38.462 0.00 0.00 0.00 3.69
75 76 6.204882 CCTTTCAACAGAATAAACGAAGAGGT 59.795 38.462 0.00 0.00 0.00 3.85
76 77 6.539649 TTCAACAGAATAAACGAAGAGGTG 57.460 37.500 0.00 0.00 0.00 4.00
77 78 5.607477 TCAACAGAATAAACGAAGAGGTGT 58.393 37.500 0.00 0.00 0.00 4.16
78 79 5.465390 TCAACAGAATAAACGAAGAGGTGTG 59.535 40.000 0.00 0.00 0.00 3.82
79 80 4.957296 ACAGAATAAACGAAGAGGTGTGT 58.043 39.130 0.00 0.00 0.00 3.72
80 81 4.750098 ACAGAATAAACGAAGAGGTGTGTG 59.250 41.667 0.00 0.00 0.00 3.82
81 82 3.746492 AGAATAAACGAAGAGGTGTGTGC 59.254 43.478 0.00 0.00 0.00 4.57
82 83 1.493772 TAAACGAAGAGGTGTGTGCG 58.506 50.000 0.00 0.00 0.00 5.34
83 84 1.772063 AAACGAAGAGGTGTGTGCGC 61.772 55.000 0.00 0.00 0.00 6.09
84 85 3.767230 CGAAGAGGTGTGTGCGCG 61.767 66.667 0.00 0.00 0.00 6.86
85 86 4.077188 GAAGAGGTGTGTGCGCGC 62.077 66.667 27.26 27.26 0.00 6.86
91 92 4.368808 GTGTGTGCGCGCGTTCAT 62.369 61.111 32.35 0.00 0.00 2.57
92 93 2.735100 TGTGTGCGCGCGTTCATA 60.735 55.556 32.35 23.57 0.00 2.15
93 94 2.310966 TGTGTGCGCGCGTTCATAA 61.311 52.632 32.35 18.20 0.00 1.90
94 95 1.154562 GTGTGCGCGCGTTCATAAA 60.155 52.632 32.35 2.27 0.00 1.40
95 96 0.723129 GTGTGCGCGCGTTCATAAAA 60.723 50.000 32.35 1.38 0.00 1.52
96 97 0.451957 TGTGCGCGCGTTCATAAAAG 60.452 50.000 32.35 0.00 0.00 2.27
97 98 0.452122 GTGCGCGCGTTCATAAAAGT 60.452 50.000 32.35 0.00 0.00 2.66
98 99 0.451957 TGCGCGCGTTCATAAAAGTG 60.452 50.000 32.35 0.00 0.00 3.16
99 100 0.452122 GCGCGCGTTCATAAAAGTGT 60.452 50.000 32.35 0.00 0.00 3.55
100 101 1.201834 GCGCGCGTTCATAAAAGTGTA 60.202 47.619 32.35 0.00 0.00 2.90
101 102 2.536130 GCGCGCGTTCATAAAAGTGTAT 60.536 45.455 32.35 0.00 0.00 2.29
102 103 3.019589 CGCGCGTTCATAAAAGTGTATG 58.980 45.455 24.19 0.00 33.49 2.39
103 104 3.482923 CGCGCGTTCATAAAAGTGTATGT 60.483 43.478 24.19 0.00 33.85 2.29
104 105 4.259490 CGCGCGTTCATAAAAGTGTATGTA 60.259 41.667 24.19 0.00 33.85 2.29
105 106 4.953814 GCGCGTTCATAAAAGTGTATGTAC 59.046 41.667 8.43 0.00 33.85 2.90
109 110 7.041187 CGTTCATAAAAGTGTATGTACGTGT 57.959 36.000 13.07 0.00 44.00 4.49
110 111 6.946037 CGTTCATAAAAGTGTATGTACGTGTG 59.054 38.462 13.07 0.00 44.00 3.82
111 112 7.358600 CGTTCATAAAAGTGTATGTACGTGTGT 60.359 37.037 13.07 0.00 44.00 3.72
112 113 7.341024 TCATAAAAGTGTATGTACGTGTGTG 57.659 36.000 0.00 0.00 33.85 3.82
117 118 4.221342 AGTGTATGTACGTGTGTGTTACG 58.779 43.478 0.00 0.00 46.31 3.18
179 180 9.457436 TGAGTATCTGTGATTGTACTGTACTTA 57.543 33.333 17.98 7.51 34.92 2.24
231 233 6.500041 TGGTAAAATTTTTCTCACGTCCTTG 58.500 36.000 9.06 0.00 0.00 3.61
245 247 1.275291 GTCCTTGATCACGGGAACTCA 59.725 52.381 17.57 0.00 0.00 3.41
246 248 2.093447 GTCCTTGATCACGGGAACTCAT 60.093 50.000 17.57 0.00 0.00 2.90
247 249 2.168521 TCCTTGATCACGGGAACTCATC 59.831 50.000 17.57 0.00 0.00 2.92
248 250 2.093500 CCTTGATCACGGGAACTCATCA 60.093 50.000 10.41 0.00 0.00 3.07
321 323 2.601367 GTGCCATTGCCACACCCT 60.601 61.111 0.00 0.00 36.33 4.34
449 454 0.036306 ACCATCGTCTCCAACCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
480 485 2.681894 AACACAACACACGCACGCA 61.682 52.632 0.00 0.00 0.00 5.24
482 487 4.217111 ACAACACACGCACGCACG 62.217 61.111 0.00 0.00 39.50 5.34
557 562 1.531578 GTCCAAAGTCCAAACGCTCTC 59.468 52.381 0.00 0.00 0.00 3.20
565 570 3.391382 AAACGCTCTCCCCTCCGG 61.391 66.667 0.00 0.00 0.00 5.14
1023 1037 2.436646 CACCACCACATCTCCGCC 60.437 66.667 0.00 0.00 0.00 6.13
1061 1075 3.773154 GCCCCCTCCCTCTCCTCT 61.773 72.222 0.00 0.00 0.00 3.69
1062 1076 2.612251 CCCCCTCCCTCTCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
1063 1077 2.612251 CCCCTCCCTCTCCTCTCC 59.388 72.222 0.00 0.00 0.00 3.71
1064 1078 2.197324 CCCTCCCTCTCCTCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
1065 1079 2.520741 CCTCCCTCTCCTCTCCGC 60.521 72.222 0.00 0.00 0.00 5.54
1066 1080 2.520741 CTCCCTCTCCTCTCCGCC 60.521 72.222 0.00 0.00 0.00 6.13
1067 1081 3.024356 TCCCTCTCCTCTCCGCCT 61.024 66.667 0.00 0.00 0.00 5.52
1070 1084 2.131067 CCTCTCCTCTCCGCCTTCC 61.131 68.421 0.00 0.00 0.00 3.46
1117 1152 0.695924 TTGAGGCCTTTTCGATCCCA 59.304 50.000 6.77 0.00 0.00 4.37
1119 1154 0.748367 GAGGCCTTTTCGATCCCACC 60.748 60.000 6.77 0.00 0.00 4.61
1159 1194 1.469940 GCGCAGATATACCTCATCGGG 60.470 57.143 0.30 0.00 36.97 5.14
1192 1227 1.154073 GGAGTTCGCGCTCTACGTT 60.154 57.895 5.56 0.00 46.11 3.99
1240 1275 0.597637 CTGTCAGGTTCGCTTCGTGT 60.598 55.000 0.00 0.00 0.00 4.49
1248 1283 4.796231 CGCTTCGTGTCCTCCCCG 62.796 72.222 0.00 0.00 0.00 5.73
1251 1286 3.338126 CTTCGTGTCCTCCCCGACG 62.338 68.421 0.00 0.00 35.40 5.12
1263 1298 2.432628 CCGACGCCTCCACTTCAC 60.433 66.667 0.00 0.00 0.00 3.18
1270 1305 0.398318 GCCTCCACTTCACTTCCTGT 59.602 55.000 0.00 0.00 0.00 4.00
1316 1351 1.069765 CGGTGAACTGCCACTGACT 59.930 57.895 0.00 0.00 44.14 3.41
1318 1353 0.106708 GGTGAACTGCCACTGACTGA 59.893 55.000 0.00 0.00 37.24 3.41
1339 1374 7.097834 ACTGAGTGCTGTTTAATTCTAGGTAC 58.902 38.462 0.00 0.00 0.00 3.34
1357 1392 0.343372 ACCTGAGGGAGGATAAGCCA 59.657 55.000 2.38 0.00 46.33 4.75
1366 1401 2.185867 GATAAGCCACGCGGGTCA 59.814 61.111 12.47 0.00 44.22 4.02
1410 1445 2.103263 GGGACTACATCATGGAGGACAC 59.897 54.545 0.73 0.00 30.79 3.67
1539 1574 2.496070 TCGACCTGGGATGTTTGAGTAG 59.504 50.000 0.00 0.00 0.00 2.57
1572 1607 0.314935 CGCTGTGGTTTGCAGGATTT 59.685 50.000 0.00 0.00 34.73 2.17
1592 1627 9.014297 AGGATTTGAAAACACAAGAATAGGTAG 57.986 33.333 0.00 0.00 0.00 3.18
1596 1631 8.974060 TTGAAAACACAAGAATAGGTAGAACT 57.026 30.769 0.00 0.00 0.00 3.01
1639 1674 9.645128 TGACATTTGGAATCCTACATTGAATAT 57.355 29.630 0.00 0.00 0.00 1.28
1697 1732 1.388837 GCCACAGGAAAAACACCGGT 61.389 55.000 0.00 0.00 36.37 5.28
1698 1733 3.936585 CACAGGAAAAACACCGGTG 57.063 52.632 32.83 32.83 44.05 4.94
1713 1748 0.808755 CGGTGTTTTGCATAGGGACC 59.191 55.000 0.00 0.00 0.00 4.46
1785 2189 5.360649 GGTCTAACCTCTTGCTAGGAATT 57.639 43.478 0.00 0.00 39.15 2.17
1798 2202 9.601810 TCTTGCTAGGAATTCTATGGAATAGTA 57.398 33.333 4.56 0.00 46.98 1.82
1854 2259 3.291584 GGAGGGTCCATTCCTTTGAATC 58.708 50.000 4.74 0.00 39.20 2.52
1862 2267 5.067023 GTCCATTCCTTTGAATCAGATGGAC 59.933 44.000 18.99 18.99 43.23 4.02
1863 2268 5.044624 TCCATTCCTTTGAATCAGATGGACT 60.045 40.000 8.96 0.35 39.20 3.85
1864 2269 5.298777 CCATTCCTTTGAATCAGATGGACTC 59.701 44.000 0.00 0.00 39.20 3.36
1865 2270 5.768980 TTCCTTTGAATCAGATGGACTCT 57.231 39.130 1.56 0.00 33.14 3.24
1866 2271 6.874278 TTCCTTTGAATCAGATGGACTCTA 57.126 37.500 1.56 0.00 31.13 2.43
1867 2272 6.874278 TCCTTTGAATCAGATGGACTCTAA 57.126 37.500 0.00 0.00 31.13 2.10
1868 2273 7.257790 TCCTTTGAATCAGATGGACTCTAAA 57.742 36.000 0.00 0.00 31.13 1.85
1869 2274 7.865820 TCCTTTGAATCAGATGGACTCTAAAT 58.134 34.615 0.00 0.00 31.13 1.40
1945 2350 4.933505 TCTCTGAGAGATATGCAACTGG 57.066 45.455 8.34 0.00 33.35 4.00
1969 2374 6.596888 GGTTGGGTTTTACTGGTATCTACTTC 59.403 42.308 0.00 0.00 0.00 3.01
2018 2423 6.981737 ACTTTTGCCCTCTAAATACCCTTAT 58.018 36.000 0.00 0.00 0.00 1.73
2071 2477 3.630769 TGAACTGTGACGTCTGTTCTAGT 59.369 43.478 29.86 18.37 42.53 2.57
2171 2577 8.439286 GTGTTTGCTTTGTTAATTTTCTGTTGA 58.561 29.630 0.00 0.00 0.00 3.18
2181 2587 8.681806 TGTTAATTTTCTGTTGAACACTCATCA 58.318 29.630 0.00 0.00 31.81 3.07
2187 2593 7.857734 TTCTGTTGAACACTCATCACTAAAA 57.142 32.000 0.00 0.00 29.98 1.52
2269 2675 5.007136 GCTAGTCAATAAGGTGTGAGAATGC 59.993 44.000 0.00 0.00 0.00 3.56
2294 2700 7.764901 GCCATACTAGTAACTTCCATATTAGCC 59.235 40.741 6.70 0.00 0.00 3.93
2296 2702 6.973460 ACTAGTAACTTCCATATTAGCCGT 57.027 37.500 0.00 0.00 0.00 5.68
2299 2705 8.574737 ACTAGTAACTTCCATATTAGCCGTAAG 58.425 37.037 0.00 0.00 0.00 2.34
2345 2751 5.060506 TGCATAAGTCATAACATTACCCCG 58.939 41.667 0.00 0.00 0.00 5.73
2404 2810 2.649331 TTGGCGAGTTAGTAGCTGAC 57.351 50.000 0.00 0.00 0.00 3.51
2569 2978 5.189659 TGGAACAACCAATCGTTTTTAGG 57.810 39.130 0.00 0.00 46.75 2.69
2586 2995 5.511234 TTTAGGGAGTAGTTAGCTTAGCG 57.489 43.478 0.00 0.00 0.00 4.26
2720 3150 9.019656 AGACAGAGGTATTATGCTCAGTTATAG 57.980 37.037 0.00 0.00 0.00 1.31
2773 3203 6.495181 TGGTTTACACATATTGTCCATGGTTT 59.505 34.615 12.58 0.00 39.91 3.27
2774 3204 6.811170 GGTTTACACATATTGTCCATGGTTTG 59.189 38.462 12.58 0.21 39.91 2.93
2894 3442 6.405278 AAACCATTAGTCAAAGAGGTTTGG 57.595 37.500 6.59 0.00 42.89 3.28
3018 3566 3.388350 GGTCCTCCTATTGGTACTTCCTG 59.612 52.174 0.00 0.00 37.07 3.86
3222 3780 9.599322 CGGTGCTATTTTAAAGAATATGATGTC 57.401 33.333 0.00 0.00 0.00 3.06
3268 3826 1.668751 GGAAGTTGAACGTGAACTGCA 59.331 47.619 16.77 0.00 33.85 4.41
3290 3848 7.386059 TGCAAGATGTCTATGTTCTAACTTGA 58.614 34.615 0.00 0.00 35.67 3.02
3366 3926 7.466805 TGATCTTTTAGCAAATCAATGTCTCG 58.533 34.615 0.00 0.00 0.00 4.04
3401 3961 8.870160 TTAATTGTCCACAAACAAGAATTCAG 57.130 30.769 8.44 2.21 42.09 3.02
3476 4242 1.673033 CCTTGTCTTGCTGTACCTCCG 60.673 57.143 0.00 0.00 0.00 4.63
3498 4264 6.719370 TCCGATGATTTCCCCCTTATATTTTG 59.281 38.462 0.00 0.00 0.00 2.44
3506 4272 8.706322 TTTCCCCCTTATATTTTGAAGATAGC 57.294 34.615 0.00 0.00 0.00 2.97
3539 4305 3.548770 CACATGGATTGCTACCACATCT 58.451 45.455 0.00 0.00 40.36 2.90
3547 4313 3.443099 TGCTACCACATCTTCTCATCG 57.557 47.619 0.00 0.00 0.00 3.84
3557 4323 6.403527 CCACATCTTCTCATCGCAATAAAACA 60.404 38.462 0.00 0.00 0.00 2.83
3558 4324 7.022979 CACATCTTCTCATCGCAATAAAACAA 58.977 34.615 0.00 0.00 0.00 2.83
3712 4479 6.295462 GCCTTACATGGCCATCATATCAATTT 60.295 38.462 17.61 0.00 46.82 1.82
3807 4574 2.396590 TCTTCTATCGTTGTTGGCCC 57.603 50.000 0.00 0.00 0.00 5.80
3832 4599 7.155328 CGATTAAGGTCCTGTATCTAGCAATT 58.845 38.462 0.00 0.00 0.00 2.32
3850 4617 5.183904 AGCAATTCGGCTATTTTGTCTTCTT 59.816 36.000 0.00 0.00 43.70 2.52
3851 4618 5.863935 GCAATTCGGCTATTTTGTCTTCTTT 59.136 36.000 0.00 0.00 0.00 2.52
3858 4625 8.626526 TCGGCTATTTTGTCTTCTTTTTAGTTT 58.373 29.630 0.00 0.00 0.00 2.66
3910 4677 4.023291 GCTTCCATTAAGGTGATCCCAAA 58.977 43.478 3.45 0.00 39.02 3.28
3911 4678 4.651045 GCTTCCATTAAGGTGATCCCAAAT 59.349 41.667 3.45 0.80 39.02 2.32
4209 4976 5.070981 CCATACCTCTCCTCATCTTTTAGCA 59.929 44.000 0.00 0.00 0.00 3.49
4239 5006 2.654749 GCAAAAAGGGTGCCACTATC 57.345 50.000 0.00 0.00 35.91 2.08
4344 5111 7.445121 AGTAGATTGTGATATACCATGGTGTG 58.555 38.462 28.17 0.00 31.75 3.82
4357 5124 4.018506 ACCATGGTGTGTGATATCCTTGAA 60.019 41.667 18.99 0.00 0.00 2.69
4361 5128 7.285172 CCATGGTGTGTGATATCCTTGAAATTA 59.715 37.037 2.57 0.00 0.00 1.40
4431 5198 5.127845 CGCTATCCATATACAGATTGGTCCT 59.872 44.000 0.00 0.00 0.00 3.85
4467 5234 0.108992 CAAATGCACGCATTGGAGCT 60.109 50.000 17.45 0.00 44.86 4.09
4579 5346 4.202121 GGTACCTGCGTCTCAGATAATTCA 60.202 45.833 4.06 0.00 45.72 2.57
4754 5522 7.577303 AGCTTGGAACCTTTCATATTCTGATA 58.423 34.615 0.00 0.00 32.72 2.15
4879 5654 5.539582 TCCGTGTGCAAAATTACTATGAC 57.460 39.130 0.00 0.00 0.00 3.06
4924 5699 0.237761 GTGACAGTACGTCTCGCTGT 59.762 55.000 15.47 12.59 45.60 4.40
4926 5701 2.095532 GTGACAGTACGTCTCGCTGTAT 59.904 50.000 15.47 0.00 45.60 2.29
5081 5856 5.533903 TGGTAAGACCGTTCCTAGATGATAC 59.466 44.000 0.00 0.00 42.58 2.24
5390 6340 2.291475 TGCTTGCATTAGATTGGGGTCA 60.291 45.455 0.00 0.00 0.00 4.02
5394 6344 5.068987 GCTTGCATTAGATTGGGGTCATTAA 59.931 40.000 0.00 0.00 0.00 1.40
5409 6359 5.594317 GGGTCATTAATCTGTACAAGGCATT 59.406 40.000 0.00 0.00 0.00 3.56
5410 6360 6.460123 GGGTCATTAATCTGTACAAGGCATTG 60.460 42.308 10.01 10.01 42.46 2.82
5420 6370 5.693961 TGTACAAGGCATTGGATGTGATAT 58.306 37.500 16.45 0.00 40.97 1.63
5573 6523 5.183140 TGAGATCCCAATCGTTTTTCTTTCC 59.817 40.000 0.00 0.00 36.97 3.13
5574 6524 5.325239 AGATCCCAATCGTTTTTCTTTCCT 58.675 37.500 0.00 0.00 36.97 3.36
5575 6525 5.775195 AGATCCCAATCGTTTTTCTTTCCTT 59.225 36.000 0.00 0.00 36.97 3.36
5577 6527 6.228616 TCCCAATCGTTTTTCTTTCCTTTT 57.771 33.333 0.00 0.00 0.00 2.27
5578 6528 6.645306 TCCCAATCGTTTTTCTTTCCTTTTT 58.355 32.000 0.00 0.00 0.00 1.94
5601 6551 8.652592 TTTTTCGTTTCTTTTGCATTGAAAAG 57.347 26.923 9.72 11.25 42.13 2.27
5602 6552 6.959671 TTCGTTTCTTTTGCATTGAAAAGT 57.040 29.167 15.77 0.00 41.68 2.66
5603 6553 8.467402 TTTCGTTTCTTTTGCATTGAAAAGTA 57.533 26.923 15.77 8.73 41.68 2.24
5604 6554 8.467402 TTCGTTTCTTTTGCATTGAAAAGTAA 57.533 26.923 15.77 8.54 41.68 2.24
5605 6555 8.114359 TCGTTTCTTTTGCATTGAAAAGTAAG 57.886 30.769 15.77 2.66 41.68 2.34
5606 6556 7.971168 TCGTTTCTTTTGCATTGAAAAGTAAGA 59.029 29.630 15.77 4.46 41.68 2.10
5607 6557 8.591312 CGTTTCTTTTGCATTGAAAAGTAAGAA 58.409 29.630 8.14 8.79 41.68 2.52
5608 6558 9.906111 GTTTCTTTTGCATTGAAAAGTAAGAAG 57.094 29.630 8.14 1.59 41.68 2.85
5609 6559 9.651913 TTTCTTTTGCATTGAAAAGTAAGAAGT 57.348 25.926 8.14 0.00 41.68 3.01
5610 6560 9.651913 TTCTTTTGCATTGAAAAGTAAGAAGTT 57.348 25.926 8.14 0.00 41.68 2.66
5611 6561 9.301153 TCTTTTGCATTGAAAAGTAAGAAGTTC 57.699 29.630 8.14 0.00 41.68 3.01
5612 6562 8.994429 TTTTGCATTGAAAAGTAAGAAGTTCA 57.006 26.923 5.50 0.00 0.00 3.18
5613 6563 8.633075 TTTGCATTGAAAAGTAAGAAGTTCAG 57.367 30.769 5.50 0.00 31.98 3.02
5614 6564 7.333528 TGCATTGAAAAGTAAGAAGTTCAGT 57.666 32.000 5.50 0.00 31.98 3.41
5615 6565 7.771183 TGCATTGAAAAGTAAGAAGTTCAGTT 58.229 30.769 5.50 0.00 31.98 3.16
5616 6566 8.898761 TGCATTGAAAAGTAAGAAGTTCAGTTA 58.101 29.630 5.50 0.00 31.98 2.24
5617 6567 9.170584 GCATTGAAAAGTAAGAAGTTCAGTTAC 57.829 33.333 5.50 6.31 31.98 2.50
5622 6572 9.207042 GAAAAGTAAGAAGTTCAGTTACAAACG 57.793 33.333 14.19 0.00 36.23 3.60
5623 6573 7.838771 AAGTAAGAAGTTCAGTTACAAACGT 57.161 32.000 14.19 0.00 36.23 3.99
5624 6574 7.460751 AGTAAGAAGTTCAGTTACAAACGTC 57.539 36.000 14.19 7.90 35.12 4.34
5625 6575 5.729974 AAGAAGTTCAGTTACAAACGTCC 57.270 39.130 5.50 0.46 35.37 4.79
5626 6576 3.800506 AGAAGTTCAGTTACAAACGTCCG 59.199 43.478 5.50 0.00 35.37 4.79
5627 6577 3.441496 AGTTCAGTTACAAACGTCCGA 57.559 42.857 0.00 0.00 36.23 4.55
5628 6578 3.378339 AGTTCAGTTACAAACGTCCGAG 58.622 45.455 0.00 0.00 36.23 4.63
5629 6579 2.427232 TCAGTTACAAACGTCCGAGG 57.573 50.000 0.00 0.00 36.23 4.63
5630 6580 1.955778 TCAGTTACAAACGTCCGAGGA 59.044 47.619 0.00 0.00 36.23 3.71
5631 6581 2.056577 CAGTTACAAACGTCCGAGGAC 58.943 52.381 12.07 12.07 41.40 3.85
5641 6591 4.124351 CCGAGGACGCGCAGGTTA 62.124 66.667 5.73 0.00 38.29 2.85
5642 6592 2.879462 CGAGGACGCGCAGGTTAC 60.879 66.667 5.73 0.00 0.00 2.50
5643 6593 2.260434 GAGGACGCGCAGGTTACA 59.740 61.111 5.73 0.00 0.00 2.41
5644 6594 1.373748 GAGGACGCGCAGGTTACAA 60.374 57.895 5.73 0.00 0.00 2.41
5645 6595 1.623973 GAGGACGCGCAGGTTACAAC 61.624 60.000 5.73 0.00 0.00 3.32
5646 6596 2.468532 GACGCGCAGGTTACAACG 59.531 61.111 5.73 0.00 0.00 4.10
5647 6597 2.279650 ACGCGCAGGTTACAACGT 60.280 55.556 5.73 0.00 0.00 3.99
5648 6598 1.824272 GACGCGCAGGTTACAACGTT 61.824 55.000 5.73 0.00 33.31 3.99
5649 6599 1.438059 CGCGCAGGTTACAACGTTG 60.438 57.895 26.20 26.20 0.00 4.10
5650 6600 1.823260 CGCGCAGGTTACAACGTTGA 61.823 55.000 33.66 15.02 0.00 3.18
5651 6601 0.515564 GCGCAGGTTACAACGTTGAT 59.484 50.000 33.66 19.62 0.00 2.57
5652 6602 1.727880 GCGCAGGTTACAACGTTGATA 59.272 47.619 33.66 18.64 0.00 2.15
5653 6603 2.350498 GCGCAGGTTACAACGTTGATAT 59.650 45.455 33.66 14.85 0.00 1.63
5654 6604 3.784199 GCGCAGGTTACAACGTTGATATG 60.784 47.826 33.66 22.23 0.00 1.78
5655 6605 3.369756 CGCAGGTTACAACGTTGATATGT 59.630 43.478 33.66 15.03 0.00 2.29
5656 6606 4.142988 CGCAGGTTACAACGTTGATATGTT 60.143 41.667 33.66 13.35 33.79 2.71
5704 6654 5.590663 TGCTGTTAGGTGTGTTGTTAATCAA 59.409 36.000 0.00 0.00 0.00 2.57
5723 6673 7.935338 AATCAATCAATTTACGCATTCCATC 57.065 32.000 0.00 0.00 0.00 3.51
5777 6727 1.607148 GCTTACTGGACAAAAACGCCT 59.393 47.619 0.00 0.00 0.00 5.52
5806 6756 1.765657 GAGCTCCATGGAGGCCTCT 60.766 63.158 36.92 26.79 42.19 3.69
5809 6759 0.107643 GCTCCATGGAGGCCTCTAAC 59.892 60.000 36.92 17.91 42.19 2.34
5825 6775 6.427853 GGCCTCTAACAGCATTTTTCAAATTT 59.572 34.615 0.00 0.00 0.00 1.82
5896 6850 8.694394 CATATAGATGAAGACACAATGTACACG 58.306 37.037 0.00 0.00 34.73 4.49
5909 6864 7.968956 ACACAATGTACACGTGTGAAATTTTTA 59.031 29.630 32.74 4.53 42.10 1.52
5911 6866 7.166804 ACAATGTACACGTGTGAAATTTTTAGC 59.833 33.333 30.83 6.79 0.00 3.09
5932 6887 5.460646 AGCACAAAATACGTTGAAATGAGG 58.539 37.500 0.00 0.00 32.59 3.86
5945 6900 4.885413 TGAAATGAGGGATGTGCAAAAAG 58.115 39.130 0.00 0.00 0.00 2.27
5966 6921 7.486407 AAAGGACAAATATGAGGCTTTTGAT 57.514 32.000 14.52 1.66 35.03 2.57
5969 6924 6.096001 AGGACAAATATGAGGCTTTTGATCAC 59.904 38.462 14.52 3.92 35.03 3.06
6028 6987 3.713858 TTGCACAGGTCACATTTCAAG 57.286 42.857 0.00 0.00 0.00 3.02
6029 6988 1.955778 TGCACAGGTCACATTTCAAGG 59.044 47.619 0.00 0.00 0.00 3.61
6058 7017 9.906660 TTTCATCCTGAATTTTTACACACATAC 57.093 29.630 0.00 0.00 36.11 2.39
6221 7185 5.193099 AGCAACAAGTAATAGGGATTGGT 57.807 39.130 0.00 0.00 0.00 3.67
6222 7186 5.193679 AGCAACAAGTAATAGGGATTGGTC 58.806 41.667 0.00 0.00 0.00 4.02
6223 7187 4.338400 GCAACAAGTAATAGGGATTGGTCC 59.662 45.833 0.00 0.00 44.29 4.46
6257 7221 6.848562 AAAGTAATATGGATTGGAGGGAGT 57.151 37.500 0.00 0.00 0.00 3.85
6258 7222 7.947782 AAAGTAATATGGATTGGAGGGAGTA 57.052 36.000 0.00 0.00 0.00 2.59
6259 7223 6.936968 AGTAATATGGATTGGAGGGAGTAC 57.063 41.667 0.00 0.00 0.00 2.73
6260 7224 6.390504 AGTAATATGGATTGGAGGGAGTACA 58.609 40.000 0.00 0.00 0.00 2.90
6261 7225 7.025620 AGTAATATGGATTGGAGGGAGTACAT 58.974 38.462 0.00 0.00 0.00 2.29
6262 7226 6.380079 AATATGGATTGGAGGGAGTACATC 57.620 41.667 0.00 0.00 0.00 3.06
6263 7227 3.129262 TGGATTGGAGGGAGTACATCA 57.871 47.619 0.00 0.00 0.00 3.07
6264 7228 3.459828 TGGATTGGAGGGAGTACATCAA 58.540 45.455 0.00 0.00 0.00 2.57
6265 7229 3.199946 TGGATTGGAGGGAGTACATCAAC 59.800 47.826 0.00 0.00 0.00 3.18
6266 7230 3.456277 GGATTGGAGGGAGTACATCAACT 59.544 47.826 0.00 0.00 0.00 3.16
6267 7231 4.654262 GGATTGGAGGGAGTACATCAACTA 59.346 45.833 0.00 0.00 0.00 2.24
6268 7232 5.308237 GGATTGGAGGGAGTACATCAACTAT 59.692 44.000 0.00 0.00 0.00 2.12
6269 7233 6.183361 GGATTGGAGGGAGTACATCAACTATT 60.183 42.308 0.00 0.00 0.00 1.73
6270 7234 6.636454 TTGGAGGGAGTACATCAACTATTT 57.364 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.817063 CGGCAATCCTGTTGCGCG 62.817 66.667 0.00 0.00 45.78 6.86
1 2 3.737172 ACGGCAATCCTGTTGCGC 61.737 61.111 0.00 0.00 45.78 6.09
2 3 2.176546 CACGGCAATCCTGTTGCG 59.823 61.111 6.67 5.23 45.78 4.85
3 4 1.210155 GTCACGGCAATCCTGTTGC 59.790 57.895 4.27 4.27 44.22 4.17
4 5 1.227999 ACGTCACGGCAATCCTGTTG 61.228 55.000 0.35 0.00 0.00 3.33
5 6 1.070786 ACGTCACGGCAATCCTGTT 59.929 52.632 0.35 0.00 0.00 3.16
6 7 1.667830 CACGTCACGGCAATCCTGT 60.668 57.895 0.35 0.00 0.00 4.00
7 8 1.227999 AACACGTCACGGCAATCCTG 61.228 55.000 0.35 0.00 0.00 3.86
8 9 1.070786 AACACGTCACGGCAATCCT 59.929 52.632 0.35 0.00 0.00 3.24
9 10 1.206578 CAACACGTCACGGCAATCC 59.793 57.895 0.35 0.00 0.00 3.01
10 11 1.206578 CCAACACGTCACGGCAATC 59.793 57.895 0.35 0.00 0.00 2.67
11 12 1.227704 TCCAACACGTCACGGCAAT 60.228 52.632 0.35 0.00 0.00 3.56
12 13 1.885388 CTCCAACACGTCACGGCAA 60.885 57.895 0.35 0.00 0.00 4.52
13 14 2.279851 CTCCAACACGTCACGGCA 60.280 61.111 0.35 0.00 0.00 5.69
14 15 3.041940 CCTCCAACACGTCACGGC 61.042 66.667 0.35 0.00 0.00 5.68
15 16 3.041940 GCCTCCAACACGTCACGG 61.042 66.667 0.35 0.00 0.00 4.94
16 17 3.041940 GGCCTCCAACACGTCACG 61.042 66.667 0.00 0.00 0.00 4.35
17 18 3.041940 CGGCCTCCAACACGTCAC 61.042 66.667 0.00 0.00 0.00 3.67
18 19 4.980805 GCGGCCTCCAACACGTCA 62.981 66.667 0.00 0.00 0.00 4.35
19 20 4.681978 AGCGGCCTCCAACACGTC 62.682 66.667 0.00 0.00 0.00 4.34
20 21 4.681978 GAGCGGCCTCCAACACGT 62.682 66.667 0.00 0.00 31.68 4.49
21 22 4.680237 TGAGCGGCCTCCAACACG 62.680 66.667 0.00 0.00 37.29 4.49
22 23 2.281484 TTGAGCGGCCTCCAACAC 60.281 61.111 0.00 0.00 37.29 3.32
23 24 2.281484 GTTGAGCGGCCTCCAACA 60.281 61.111 20.00 4.37 37.29 3.33
24 25 2.281484 TGTTGAGCGGCCTCCAAC 60.281 61.111 18.81 18.81 37.29 3.77
25 26 2.032528 CTGTTGAGCGGCCTCCAA 59.967 61.111 0.00 0.00 37.29 3.53
26 27 4.020617 CCTGTTGAGCGGCCTCCA 62.021 66.667 0.00 0.00 37.29 3.86
27 28 3.706373 TCCTGTTGAGCGGCCTCC 61.706 66.667 0.00 0.00 37.29 4.30
28 29 2.435059 GTCCTGTTGAGCGGCCTC 60.435 66.667 0.00 0.00 38.62 4.70
29 30 4.021925 GGTCCTGTTGAGCGGCCT 62.022 66.667 0.00 0.00 0.00 5.19
31 32 3.842925 TTGGGTCCTGTTGAGCGGC 62.843 63.158 0.00 0.00 42.55 6.53
32 33 1.966451 GTTGGGTCCTGTTGAGCGG 60.966 63.158 0.00 0.00 42.55 5.52
33 34 1.966451 GGTTGGGTCCTGTTGAGCG 60.966 63.158 0.00 0.00 42.55 5.03
34 35 0.178990 AAGGTTGGGTCCTGTTGAGC 60.179 55.000 0.00 0.00 40.86 4.26
35 36 2.230660 GAAAGGTTGGGTCCTGTTGAG 58.769 52.381 0.00 0.00 37.93 3.02
36 37 1.566703 TGAAAGGTTGGGTCCTGTTGA 59.433 47.619 0.00 0.00 37.93 3.18
37 38 2.065899 TGAAAGGTTGGGTCCTGTTG 57.934 50.000 0.00 0.00 37.93 3.33
38 39 2.291930 TGTTGAAAGGTTGGGTCCTGTT 60.292 45.455 0.00 0.00 37.93 3.16
39 40 1.286553 TGTTGAAAGGTTGGGTCCTGT 59.713 47.619 0.00 0.00 37.93 4.00
40 41 1.956477 CTGTTGAAAGGTTGGGTCCTG 59.044 52.381 0.00 0.00 37.93 3.86
41 42 1.850345 TCTGTTGAAAGGTTGGGTCCT 59.150 47.619 0.00 0.00 39.84 3.85
42 43 2.358322 TCTGTTGAAAGGTTGGGTCC 57.642 50.000 0.00 0.00 0.00 4.46
43 44 6.213677 GTTTATTCTGTTGAAAGGTTGGGTC 58.786 40.000 0.00 0.00 35.63 4.46
44 45 5.221165 CGTTTATTCTGTTGAAAGGTTGGGT 60.221 40.000 0.00 0.00 35.63 4.51
45 46 5.009210 TCGTTTATTCTGTTGAAAGGTTGGG 59.991 40.000 0.00 0.00 35.63 4.12
46 47 6.067263 TCGTTTATTCTGTTGAAAGGTTGG 57.933 37.500 0.00 0.00 35.63 3.77
47 48 7.414436 TCTTCGTTTATTCTGTTGAAAGGTTG 58.586 34.615 0.00 0.00 35.63 3.77
48 49 7.255139 CCTCTTCGTTTATTCTGTTGAAAGGTT 60.255 37.037 0.00 0.00 35.63 3.50
49 50 6.204882 CCTCTTCGTTTATTCTGTTGAAAGGT 59.795 38.462 0.00 0.00 35.63 3.50
50 51 6.204882 ACCTCTTCGTTTATTCTGTTGAAAGG 59.795 38.462 0.00 0.00 35.63 3.11
51 52 7.072030 CACCTCTTCGTTTATTCTGTTGAAAG 58.928 38.462 0.00 0.00 35.63 2.62
52 53 6.540914 ACACCTCTTCGTTTATTCTGTTGAAA 59.459 34.615 0.00 0.00 35.63 2.69
53 54 6.018262 CACACCTCTTCGTTTATTCTGTTGAA 60.018 38.462 0.00 0.00 36.54 2.69
54 55 5.465390 CACACCTCTTCGTTTATTCTGTTGA 59.535 40.000 0.00 0.00 0.00 3.18
55 56 5.236478 ACACACCTCTTCGTTTATTCTGTTG 59.764 40.000 0.00 0.00 0.00 3.33
56 57 5.236478 CACACACCTCTTCGTTTATTCTGTT 59.764 40.000 0.00 0.00 0.00 3.16
57 58 4.750098 CACACACCTCTTCGTTTATTCTGT 59.250 41.667 0.00 0.00 0.00 3.41
58 59 4.377431 GCACACACCTCTTCGTTTATTCTG 60.377 45.833 0.00 0.00 0.00 3.02
59 60 3.746492 GCACACACCTCTTCGTTTATTCT 59.254 43.478 0.00 0.00 0.00 2.40
60 61 3.423123 CGCACACACCTCTTCGTTTATTC 60.423 47.826 0.00 0.00 0.00 1.75
61 62 2.478894 CGCACACACCTCTTCGTTTATT 59.521 45.455 0.00 0.00 0.00 1.40
62 63 2.066262 CGCACACACCTCTTCGTTTAT 58.934 47.619 0.00 0.00 0.00 1.40
63 64 1.493772 CGCACACACCTCTTCGTTTA 58.506 50.000 0.00 0.00 0.00 2.01
64 65 1.772063 GCGCACACACCTCTTCGTTT 61.772 55.000 0.30 0.00 0.00 3.60
65 66 2.244651 GCGCACACACCTCTTCGTT 61.245 57.895 0.30 0.00 0.00 3.85
66 67 2.661866 GCGCACACACCTCTTCGT 60.662 61.111 0.30 0.00 0.00 3.85
67 68 3.767230 CGCGCACACACCTCTTCG 61.767 66.667 8.75 0.00 0.00 3.79
68 69 4.077188 GCGCGCACACACCTCTTC 62.077 66.667 29.10 0.00 0.00 2.87
74 75 2.487443 TTATGAACGCGCGCACACAC 62.487 55.000 32.58 16.76 0.00 3.82
75 76 1.832411 TTTATGAACGCGCGCACACA 61.832 50.000 32.58 25.17 0.00 3.72
76 77 0.723129 TTTTATGAACGCGCGCACAC 60.723 50.000 32.58 20.38 0.00 3.82
77 78 0.451957 CTTTTATGAACGCGCGCACA 60.452 50.000 32.58 28.72 0.00 4.57
78 79 0.452122 ACTTTTATGAACGCGCGCAC 60.452 50.000 32.58 23.88 0.00 5.34
79 80 0.451957 CACTTTTATGAACGCGCGCA 60.452 50.000 32.58 21.73 0.00 6.09
80 81 0.452122 ACACTTTTATGAACGCGCGC 60.452 50.000 32.58 23.91 0.00 6.86
81 82 2.773036 TACACTTTTATGAACGCGCG 57.227 45.000 30.96 30.96 0.00 6.86
82 83 3.998522 ACATACACTTTTATGAACGCGC 58.001 40.909 5.73 0.00 34.14 6.86
83 84 5.178260 CGTACATACACTTTTATGAACGCG 58.822 41.667 3.53 3.53 34.14 6.01
84 85 5.949787 CACGTACATACACTTTTATGAACGC 59.050 40.000 0.00 0.00 34.14 4.84
85 86 6.946037 CACACGTACATACACTTTTATGAACG 59.054 38.462 0.00 0.00 34.14 3.95
86 87 7.738609 CACACACGTACATACACTTTTATGAAC 59.261 37.037 0.00 0.00 34.14 3.18
87 88 7.438757 ACACACACGTACATACACTTTTATGAA 59.561 33.333 0.00 0.00 34.14 2.57
88 89 6.924612 ACACACACGTACATACACTTTTATGA 59.075 34.615 0.00 0.00 34.14 2.15
89 90 7.112528 ACACACACGTACATACACTTTTATG 57.887 36.000 0.00 0.00 35.82 1.90
90 91 7.718272 AACACACACGTACATACACTTTTAT 57.282 32.000 0.00 0.00 0.00 1.40
91 92 7.096681 CGTAACACACACGTACATACACTTTTA 60.097 37.037 0.00 0.00 34.74 1.52
92 93 6.291743 CGTAACACACACGTACATACACTTTT 60.292 38.462 0.00 0.00 34.74 2.27
93 94 5.173673 CGTAACACACACGTACATACACTTT 59.826 40.000 0.00 0.00 34.74 2.66
94 95 4.676471 CGTAACACACACGTACATACACTT 59.324 41.667 0.00 0.00 34.74 3.16
95 96 4.221342 CGTAACACACACGTACATACACT 58.779 43.478 0.00 0.00 34.74 3.55
96 97 4.535629 CGTAACACACACGTACATACAC 57.464 45.455 0.00 0.00 34.74 2.90
105 106 0.924777 TCTTGCACGTAACACACACG 59.075 50.000 0.00 0.00 44.80 4.49
106 107 3.602390 ATTCTTGCACGTAACACACAC 57.398 42.857 0.00 0.00 0.00 3.82
107 108 5.736486 TTTATTCTTGCACGTAACACACA 57.264 34.783 0.00 0.00 0.00 3.72
108 109 8.716619 TTATTTTATTCTTGCACGTAACACAC 57.283 30.769 0.00 0.00 0.00 3.82
109 110 9.731819 TTTTATTTTATTCTTGCACGTAACACA 57.268 25.926 0.00 0.00 0.00 3.72
142 143 9.702494 CAATCACAGATACTCACATACACATAT 57.298 33.333 0.00 0.00 0.00 1.78
143 144 8.695456 ACAATCACAGATACTCACATACACATA 58.305 33.333 0.00 0.00 0.00 2.29
147 148 8.190784 CAGTACAATCACAGATACTCACATACA 58.809 37.037 0.00 0.00 0.00 2.29
148 149 8.191446 ACAGTACAATCACAGATACTCACATAC 58.809 37.037 0.00 0.00 0.00 2.39
153 154 7.939784 AGTACAGTACAATCACAGATACTCA 57.060 36.000 13.37 0.00 0.00 3.41
212 214 6.438763 GTGATCAAGGACGTGAGAAAAATTT 58.561 36.000 0.00 0.00 0.00 1.82
215 217 3.493129 CGTGATCAAGGACGTGAGAAAAA 59.507 43.478 0.00 0.00 0.00 1.94
216 218 3.057019 CGTGATCAAGGACGTGAGAAAA 58.943 45.455 0.00 0.00 0.00 2.29
224 226 0.246635 AGTTCCCGTGATCAAGGACG 59.753 55.000 27.02 12.44 35.31 4.79
231 233 4.003648 AGTTTTGATGAGTTCCCGTGATC 58.996 43.478 0.00 0.00 0.00 2.92
245 247 6.601217 GGATCTCTAGCTTTTGGAGTTTTGAT 59.399 38.462 0.00 0.00 35.95 2.57
246 248 5.940470 GGATCTCTAGCTTTTGGAGTTTTGA 59.060 40.000 0.00 0.00 35.95 2.69
247 249 5.707298 TGGATCTCTAGCTTTTGGAGTTTTG 59.293 40.000 0.00 0.00 35.95 2.44
248 250 5.880901 TGGATCTCTAGCTTTTGGAGTTTT 58.119 37.500 0.00 0.00 35.95 2.43
313 315 2.046892 CTTGAGCCGAGGGTGTGG 60.047 66.667 0.00 0.00 0.00 4.17
314 316 1.374758 GACTTGAGCCGAGGGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
315 317 2.584391 GGACTTGAGCCGAGGGTGT 61.584 63.158 0.00 0.00 0.00 4.16
321 323 2.144078 TGGGTTGGACTTGAGCCGA 61.144 57.895 0.00 0.00 36.23 5.54
449 454 1.723608 TTGTGTTGGCGCTGGTGAAG 61.724 55.000 7.64 0.00 0.00 3.02
529 534 2.033602 GACTTTGGACCGTGGGGG 59.966 66.667 0.00 0.00 43.62 5.40
568 573 1.524849 GATTTGAGGCGAGGGGAGC 60.525 63.158 0.00 0.00 0.00 4.70
898 903 0.526211 CACCGGACAATCAGAGACGA 59.474 55.000 9.46 0.00 0.00 4.20
1046 1060 2.612251 GGAGAGGAGAGGGAGGGG 59.388 72.222 0.00 0.00 0.00 4.79
1055 1069 4.214327 GCGGAAGGCGGAGAGGAG 62.214 72.222 0.00 0.00 0.00 3.69
1117 1152 3.329889 TTGGGGATCTGCAGCGGT 61.330 61.111 9.47 0.00 0.00 5.68
1119 1154 2.825836 GGTTGGGGATCTGCAGCG 60.826 66.667 9.47 0.00 0.00 5.18
1159 1194 1.031029 ACTCCCGCTCCTCGTAGAAC 61.031 60.000 0.00 0.00 34.09 3.01
1192 1227 0.537188 GCTCGTTGGAGATGGAGGAA 59.463 55.000 0.00 0.00 43.27 3.36
1248 1283 0.670854 GGAAGTGAAGTGGAGGCGTC 60.671 60.000 0.00 0.00 0.00 5.19
1251 1286 0.398318 ACAGGAAGTGAAGTGGAGGC 59.602 55.000 0.00 0.00 0.00 4.70
1263 1298 1.079503 GCGCCTAAACTGACAGGAAG 58.920 55.000 7.51 0.96 33.42 3.46
1270 1305 1.940883 ATCCGACGCGCCTAAACTGA 61.941 55.000 5.73 0.00 0.00 3.41
1316 1351 6.212791 AGGTACCTAGAATTAAACAGCACTCA 59.787 38.462 14.41 0.00 0.00 3.41
1318 1353 6.212791 TCAGGTACCTAGAATTAAACAGCACT 59.787 38.462 15.80 0.00 0.00 4.40
1339 1374 0.761802 GTGGCTTATCCTCCCTCAGG 59.238 60.000 0.00 0.00 45.15 3.86
1410 1445 1.216710 GGTCAAGAGCAGACCGGAG 59.783 63.158 9.46 0.00 45.35 4.63
1539 1574 1.132640 CAGCGGCGCTAAACTCAAC 59.867 57.895 35.90 0.00 36.40 3.18
1572 1607 8.974060 AAGTTCTACCTATTCTTGTGTTTTCA 57.026 30.769 0.00 0.00 0.00 2.69
1612 1647 7.773489 TTCAATGTAGGATTCCAAATGTCAA 57.227 32.000 5.29 0.00 0.00 3.18
1640 1675 9.063615 ACTTCTATAACCGATTTCTGTGTTTTT 57.936 29.630 0.00 0.00 0.00 1.94
1697 1732 2.570415 TTCGGTCCCTATGCAAAACA 57.430 45.000 0.00 0.00 0.00 2.83
1698 1733 2.099098 CCATTCGGTCCCTATGCAAAAC 59.901 50.000 0.00 0.00 0.00 2.43
1713 1748 0.677288 ATGGCATTGGCATCCATTCG 59.323 50.000 19.12 0.00 45.69 3.34
1748 2152 6.650427 GGTTAGACCTCCTTGAAATTTTGT 57.350 37.500 0.00 0.00 34.73 2.83
1798 2202 7.352522 TGGATTGGTTTTCTACTAGGGGATATT 59.647 37.037 0.00 0.00 0.00 1.28
1854 2259 6.263392 TCCGTTAGAGATTTAGAGTCCATCTG 59.737 42.308 2.53 0.00 39.20 2.90
1917 2322 8.703743 AGTTGCATATCTCTCAGAGAATTTACT 58.296 33.333 8.90 5.25 42.27 2.24
1945 2350 6.312180 CGAAGTAGATACCAGTAAAACCCAAC 59.688 42.308 0.00 0.00 0.00 3.77
2071 2477 0.899717 GCATGTCTGGCAAGGGGAAA 60.900 55.000 0.00 0.00 0.00 3.13
2171 2577 7.450074 TGGTGATACTTTTAGTGATGAGTGTT 58.550 34.615 0.00 0.00 0.00 3.32
2181 2587 9.388506 CAATGAAGAGATGGTGATACTTTTAGT 57.611 33.333 0.00 0.00 0.00 2.24
2187 2593 5.129980 TCTGCAATGAAGAGATGGTGATACT 59.870 40.000 0.00 0.00 0.00 2.12
2269 2675 7.974501 CGGCTAATATGGAAGTTACTAGTATGG 59.025 40.741 2.79 0.00 0.00 2.74
2294 2700 9.549509 GAGAATACTATATGAACTCTGCTTACG 57.450 37.037 0.00 0.00 0.00 3.18
2299 2705 7.816513 TGCATGAGAATACTATATGAACTCTGC 59.183 37.037 0.00 0.00 33.00 4.26
2341 2747 3.073274 ACCTGAGAAAGATTTTCGGGG 57.927 47.619 11.77 8.15 40.88 5.73
2345 2751 5.007136 CCGCAGATACCTGAGAAAGATTTTC 59.993 44.000 0.00 0.00 41.89 2.29
2393 2799 4.967084 TTGTTTCAGGGTCAGCTACTAA 57.033 40.909 0.00 0.00 0.00 2.24
2404 2810 5.977129 GTGTAACAGTTCATTTGTTTCAGGG 59.023 40.000 0.00 0.00 36.79 4.45
2434 2840 5.946377 ACTCACAAAAGTCTCTGGTTTTTCT 59.054 36.000 0.00 0.00 0.00 2.52
2564 2973 4.202090 GCGCTAAGCTAACTACTCCCTAAA 60.202 45.833 0.00 0.00 44.04 1.85
2586 2995 8.567948 ACCTACACATGTATAAAATGCATTAGC 58.432 33.333 13.39 2.37 42.57 3.09
2662 3071 4.855715 TTAGGACATCCTCGATAGCAAG 57.144 45.455 2.97 0.00 44.77 4.01
2773 3203 1.133199 AGGTGAAGGAATGGGCAAACA 60.133 47.619 0.00 0.00 0.00 2.83
2774 3204 1.546029 GAGGTGAAGGAATGGGCAAAC 59.454 52.381 0.00 0.00 0.00 2.93
2841 3271 5.601582 CGATGCTAGCAAAAACAAAACATG 58.398 37.500 23.54 0.00 0.00 3.21
2908 3456 4.216257 TCACCAAGCTGTCAGAATTTTAGC 59.784 41.667 3.32 0.00 34.71 3.09
3018 3566 8.129211 AGAGTGATTAAAGTTTGTGCTGTAAAC 58.871 33.333 0.00 0.00 38.09 2.01
3189 3747 6.102006 TCTTTAAAATAGCACCGACGATTG 57.898 37.500 0.00 0.00 0.00 2.67
3222 3780 6.037720 TGGTGATGCATTAATTTGGTAGTACG 59.962 38.462 0.00 0.00 0.00 3.67
3322 3882 8.691661 AAGATCAGTGGTAAAATTAGTTGTGT 57.308 30.769 0.00 0.00 0.00 3.72
3323 3883 9.965824 AAAAGATCAGTGGTAAAATTAGTTGTG 57.034 29.630 0.00 0.00 0.00 3.33
3387 3947 9.132521 GGATACATGAAACTGAATTCTTGTTTG 57.867 33.333 24.16 17.09 41.95 2.93
3433 3993 7.619050 AGGATAGCAGTTTATCAGTATCATGG 58.381 38.462 0.00 0.00 32.76 3.66
3476 4242 9.367160 TCTTCAAAATATAAGGGGGAAATCATC 57.633 33.333 0.00 0.00 0.00 2.92
3498 4264 5.171476 TGTGCACTGAACTTAGCTATCTTC 58.829 41.667 19.41 0.00 0.00 2.87
3506 4272 4.673580 GCAATCCATGTGCACTGAACTTAG 60.674 45.833 19.41 3.33 41.80 2.18
3539 4305 8.486383 CAAACATTTGTTTTATTGCGATGAGAA 58.514 29.630 5.95 0.00 45.07 2.87
3547 4313 6.437094 ACATGGCAAACATTTGTTTTATTGC 58.563 32.000 5.95 7.46 45.07 3.56
3557 4323 6.114767 ACTTCAGAAAACATGGCAAACATTT 58.885 32.000 0.00 0.00 37.84 2.32
3558 4324 5.673514 ACTTCAGAAAACATGGCAAACATT 58.326 33.333 0.00 0.00 37.84 2.71
3592 4358 4.443315 CCTTCAAGCAAACAAAGGGTCATT 60.443 41.667 0.00 0.00 35.63 2.57
3634 4400 2.377531 TCCCCCTGGAACCTAAAGAAAC 59.622 50.000 0.00 0.00 37.86 2.78
3807 4574 5.707242 TGCTAGATACAGGACCTTAATCG 57.293 43.478 0.00 0.00 0.00 3.34
3832 4599 7.739498 ACTAAAAAGAAGACAAAATAGCCGA 57.261 32.000 0.00 0.00 0.00 5.54
3858 4625 7.214381 TCGTTTCTCTACAGATTTCTTGGAAA 58.786 34.615 0.00 0.00 0.00 3.13
3877 4644 6.018669 CACCTTAATGGAAGCTCTATCGTTTC 60.019 42.308 0.00 0.00 39.71 2.78
4209 4976 2.043526 ACCCTTTTTGCCATCTCCAGAT 59.956 45.455 0.00 0.00 34.56 2.90
4251 5018 4.141088 ACCTTTGCAGATGGATGGATGTAT 60.141 41.667 8.40 0.00 0.00 2.29
4418 5185 6.288941 TCGAAACATTAGGACCAATCTGTA 57.711 37.500 0.00 0.00 0.00 2.74
4419 5186 5.160607 TCGAAACATTAGGACCAATCTGT 57.839 39.130 0.00 0.00 0.00 3.41
4431 5198 6.912051 GTGCATTTGCTGATATCGAAACATTA 59.088 34.615 3.94 0.00 42.66 1.90
4467 5234 0.698238 AACTGATAAGCCTGGCACCA 59.302 50.000 22.65 11.27 0.00 4.17
4506 5273 8.380742 AGAGAGGAAGACTAACCATAATTTCA 57.619 34.615 0.00 0.00 0.00 2.69
4696 5464 9.565213 GATGAAAGAGGTGAAAATGAGTAATTG 57.435 33.333 0.00 0.00 0.00 2.32
4754 5522 8.924511 TTCTCAAATTGGACTAGAACAGAAAT 57.075 30.769 0.00 0.00 0.00 2.17
4767 5535 8.842358 AAAATCTACGTACTTCTCAAATTGGA 57.158 30.769 0.00 0.00 0.00 3.53
4924 5699 7.210718 TGTAACTTCGTCTCAAAGACAGATA 57.789 36.000 7.78 0.00 45.30 1.98
4926 5701 5.509716 TGTAACTTCGTCTCAAAGACAGA 57.490 39.130 7.78 3.46 45.30 3.41
4944 5719 9.687210 CTGGATTAGCAGTATACGTAATTGTAA 57.313 33.333 0.00 1.84 0.00 2.41
5067 5842 7.362802 AGGTAACAAGGTATCATCTAGGAAC 57.637 40.000 0.00 0.00 41.41 3.62
5069 5844 6.553852 GGAAGGTAACAAGGTATCATCTAGGA 59.446 42.308 0.00 0.00 41.41 2.94
5081 5856 7.718334 AGATTTTTATGGGAAGGTAACAAGG 57.282 36.000 0.00 0.00 41.41 3.61
5305 6080 9.308000 ACATATTTGGTTTGAAGACCTTATTCA 57.692 29.630 0.00 0.00 40.47 2.57
5390 6340 6.835488 ACATCCAATGCCTTGTACAGATTAAT 59.165 34.615 0.00 0.00 0.00 1.40
5394 6344 3.949754 CACATCCAATGCCTTGTACAGAT 59.050 43.478 0.00 0.00 0.00 2.90
5409 6359 8.359875 ACAAAATTACACCAATATCACATCCA 57.640 30.769 0.00 0.00 0.00 3.41
5410 6360 9.651913 AAACAAAATTACACCAATATCACATCC 57.348 29.630 0.00 0.00 0.00 3.51
5420 6370 7.655328 CCAGAATGCTAAACAAAATTACACCAA 59.345 33.333 0.00 0.00 31.97 3.67
5493 6443 8.507249 GCTAACAAAATGTCAGTTCTCAATAGT 58.493 33.333 0.00 0.00 0.00 2.12
5554 6504 5.862678 AAAGGAAAGAAAAACGATTGGGA 57.137 34.783 0.00 0.00 0.00 4.37
5577 6527 7.801752 ACTTTTCAATGCAAAAGAAACGAAAA 58.198 26.923 14.06 8.44 43.41 2.29
5578 6528 7.357951 ACTTTTCAATGCAAAAGAAACGAAA 57.642 28.000 14.06 2.04 43.41 3.46
5579 6529 6.959671 ACTTTTCAATGCAAAAGAAACGAA 57.040 29.167 14.06 0.38 43.41 3.85
5580 6530 7.971168 TCTTACTTTTCAATGCAAAAGAAACGA 59.029 29.630 14.06 4.15 43.41 3.85
5581 6531 8.114359 TCTTACTTTTCAATGCAAAAGAAACG 57.886 30.769 14.06 12.51 43.41 3.60
5582 6532 9.906111 CTTCTTACTTTTCAATGCAAAAGAAAC 57.094 29.630 14.06 0.00 43.41 2.78
5583 6533 9.651913 ACTTCTTACTTTTCAATGCAAAAGAAA 57.348 25.926 14.06 10.57 43.41 2.52
5584 6534 9.651913 AACTTCTTACTTTTCAATGCAAAAGAA 57.348 25.926 14.06 5.36 43.41 2.52
5585 6535 9.301153 GAACTTCTTACTTTTCAATGCAAAAGA 57.699 29.630 14.06 0.00 43.41 2.52
5586 6536 9.086336 TGAACTTCTTACTTTTCAATGCAAAAG 57.914 29.630 6.99 6.99 45.33 2.27
5587 6537 8.994429 TGAACTTCTTACTTTTCAATGCAAAA 57.006 26.923 0.00 0.00 0.00 2.44
5588 6538 8.250332 ACTGAACTTCTTACTTTTCAATGCAAA 58.750 29.630 0.00 0.00 0.00 3.68
5589 6539 7.771183 ACTGAACTTCTTACTTTTCAATGCAA 58.229 30.769 0.00 0.00 0.00 4.08
5590 6540 7.333528 ACTGAACTTCTTACTTTTCAATGCA 57.666 32.000 0.00 0.00 0.00 3.96
5591 6541 9.170584 GTAACTGAACTTCTTACTTTTCAATGC 57.829 33.333 0.00 0.00 0.00 3.56
5596 6546 9.207042 CGTTTGTAACTGAACTTCTTACTTTTC 57.793 33.333 3.76 0.00 0.00 2.29
5597 6547 8.724229 ACGTTTGTAACTGAACTTCTTACTTTT 58.276 29.630 0.00 0.00 0.00 2.27
5598 6548 8.260270 ACGTTTGTAACTGAACTTCTTACTTT 57.740 30.769 0.00 0.00 0.00 2.66
5599 6549 7.010830 GGACGTTTGTAACTGAACTTCTTACTT 59.989 37.037 0.00 0.00 0.00 2.24
5600 6550 6.478016 GGACGTTTGTAACTGAACTTCTTACT 59.522 38.462 0.00 0.00 0.00 2.24
5601 6551 6.560983 CGGACGTTTGTAACTGAACTTCTTAC 60.561 42.308 0.00 0.00 0.00 2.34
5602 6552 5.459762 CGGACGTTTGTAACTGAACTTCTTA 59.540 40.000 0.00 0.00 0.00 2.10
5603 6553 4.269363 CGGACGTTTGTAACTGAACTTCTT 59.731 41.667 0.00 0.00 0.00 2.52
5604 6554 3.800506 CGGACGTTTGTAACTGAACTTCT 59.199 43.478 0.00 0.00 0.00 2.85
5605 6555 3.798337 TCGGACGTTTGTAACTGAACTTC 59.202 43.478 0.00 0.00 0.00 3.01
5606 6556 3.784338 TCGGACGTTTGTAACTGAACTT 58.216 40.909 0.00 0.00 0.00 2.66
5607 6557 3.378339 CTCGGACGTTTGTAACTGAACT 58.622 45.455 0.00 0.00 0.00 3.01
5608 6558 2.473984 CCTCGGACGTTTGTAACTGAAC 59.526 50.000 0.00 0.00 0.00 3.18
5609 6559 2.361757 TCCTCGGACGTTTGTAACTGAA 59.638 45.455 0.00 0.00 0.00 3.02
5610 6560 1.955778 TCCTCGGACGTTTGTAACTGA 59.044 47.619 0.00 0.00 0.00 3.41
5611 6561 2.056577 GTCCTCGGACGTTTGTAACTG 58.943 52.381 0.00 0.00 35.30 3.16
5612 6562 2.428888 GTCCTCGGACGTTTGTAACT 57.571 50.000 0.00 0.00 35.30 2.24
5624 6574 4.124351 TAACCTGCGCGTCCTCGG 62.124 66.667 8.43 3.81 37.56 4.63
5625 6575 2.879462 GTAACCTGCGCGTCCTCG 60.879 66.667 8.43 0.00 40.37 4.63
5626 6576 1.373748 TTGTAACCTGCGCGTCCTC 60.374 57.895 8.43 0.00 0.00 3.71
5627 6577 1.666872 GTTGTAACCTGCGCGTCCT 60.667 57.895 8.43 0.00 0.00 3.85
5628 6578 2.858158 GTTGTAACCTGCGCGTCC 59.142 61.111 8.43 0.00 0.00 4.79
5629 6579 1.824272 AACGTTGTAACCTGCGCGTC 61.824 55.000 8.43 0.00 0.00 5.19
5630 6580 1.884004 AACGTTGTAACCTGCGCGT 60.884 52.632 8.43 0.00 0.00 6.01
5631 6581 1.438059 CAACGTTGTAACCTGCGCG 60.438 57.895 20.21 0.00 0.00 6.86
5632 6582 0.515564 ATCAACGTTGTAACCTGCGC 59.484 50.000 26.47 0.00 0.00 6.09
5633 6583 3.369756 ACATATCAACGTTGTAACCTGCG 59.630 43.478 26.47 11.25 0.00 5.18
5634 6584 4.939509 ACATATCAACGTTGTAACCTGC 57.060 40.909 26.47 0.00 0.00 4.85
5635 6585 5.086058 GCAACATATCAACGTTGTAACCTG 58.914 41.667 26.47 18.66 43.52 4.00
5636 6586 5.001232 AGCAACATATCAACGTTGTAACCT 58.999 37.500 26.47 11.01 43.52 3.50
5637 6587 5.086058 CAGCAACATATCAACGTTGTAACC 58.914 41.667 26.47 9.16 43.52 2.85
5638 6588 5.685841 ACAGCAACATATCAACGTTGTAAC 58.314 37.500 26.47 9.70 43.52 2.50
5639 6589 5.933187 ACAGCAACATATCAACGTTGTAA 57.067 34.783 26.47 16.45 43.52 2.41
5640 6590 5.927115 TGTACAGCAACATATCAACGTTGTA 59.073 36.000 26.47 17.97 43.52 2.41
5641 6591 4.752604 TGTACAGCAACATATCAACGTTGT 59.247 37.500 26.47 16.50 43.52 3.32
5642 6592 5.276240 TGTACAGCAACATATCAACGTTG 57.724 39.130 22.35 22.35 44.26 4.10
5643 6593 5.641636 TGATGTACAGCAACATATCAACGTT 59.358 36.000 12.20 0.00 40.17 3.99
5644 6594 5.175127 TGATGTACAGCAACATATCAACGT 58.825 37.500 12.20 0.00 40.17 3.99
5645 6595 5.717038 TGATGTACAGCAACATATCAACG 57.283 39.130 12.20 0.00 40.17 4.10
5659 6609 5.882000 AGCAACATATCAAAGCTGATGTACA 59.118 36.000 0.00 0.00 42.48 2.90
5660 6610 6.369059 AGCAACATATCAAAGCTGATGTAC 57.631 37.500 0.00 0.00 42.48 2.90
5704 6654 5.824624 AGTGAGATGGAATGCGTAAATTGAT 59.175 36.000 0.00 0.00 0.00 2.57
5723 6673 7.038154 TGACAAACTTATTTCCCAAAGTGAG 57.962 36.000 0.00 0.00 36.12 3.51
5783 6733 3.160047 CTCCATGGAGCTCGGCCT 61.160 66.667 28.45 0.00 35.31 5.19
5878 6832 3.553917 CACACGTGTACATTGTGTCTTCA 59.446 43.478 25.25 0.00 44.49 3.02
5886 6840 7.166638 TGCTAAAAATTTCACACGTGTACATTG 59.833 33.333 22.90 8.95 0.00 2.82
5896 6850 8.536407 ACGTATTTTGTGCTAAAAATTTCACAC 58.464 29.630 9.30 7.59 39.73 3.82
5909 6864 5.460646 CCTCATTTCAACGTATTTTGTGCT 58.539 37.500 0.00 0.00 0.00 4.40
5911 6866 6.007936 TCCCTCATTTCAACGTATTTTGTG 57.992 37.500 0.00 0.00 0.00 3.33
5932 6887 6.397272 TCATATTTGTCCTTTTTGCACATCC 58.603 36.000 0.00 0.00 0.00 3.51
5945 6900 6.127647 TGTGATCAAAAGCCTCATATTTGTCC 60.128 38.462 0.00 0.00 35.92 4.02
5966 6921 8.708378 ACTTTGAGGATGAATAGTATCATGTGA 58.292 33.333 0.00 0.00 40.08 3.58
5969 6924 9.551734 TTGACTTTGAGGATGAATAGTATCATG 57.448 33.333 0.00 0.00 40.08 3.07
6127 7088 6.353404 TGGAGCCCTTTATTTTCGAAAAAT 57.647 33.333 25.77 16.39 0.00 1.82
6134 7095 4.926140 CTCCATGGAGCCCTTTATTTTC 57.074 45.455 28.45 0.00 35.31 2.29
6232 7196 7.652554 ACTCCCTCCAATCCATATTACTTTTT 58.347 34.615 0.00 0.00 0.00 1.94
6233 7197 7.226059 ACTCCCTCCAATCCATATTACTTTT 57.774 36.000 0.00 0.00 0.00 2.27
6234 7198 6.848562 ACTCCCTCCAATCCATATTACTTT 57.151 37.500 0.00 0.00 0.00 2.66
6235 7199 6.849697 TGTACTCCCTCCAATCCATATTACTT 59.150 38.462 0.00 0.00 0.00 2.24
6236 7200 6.390504 TGTACTCCCTCCAATCCATATTACT 58.609 40.000 0.00 0.00 0.00 2.24
6237 7201 6.681729 TGTACTCCCTCCAATCCATATTAC 57.318 41.667 0.00 0.00 0.00 1.89
6238 7202 7.022496 TGATGTACTCCCTCCAATCCATATTA 58.978 38.462 0.00 0.00 0.00 0.98
6239 7203 5.851693 TGATGTACTCCCTCCAATCCATATT 59.148 40.000 0.00 0.00 0.00 1.28
6240 7204 5.415065 TGATGTACTCCCTCCAATCCATAT 58.585 41.667 0.00 0.00 0.00 1.78
6241 7205 4.826616 TGATGTACTCCCTCCAATCCATA 58.173 43.478 0.00 0.00 0.00 2.74
6242 7206 3.668821 TGATGTACTCCCTCCAATCCAT 58.331 45.455 0.00 0.00 0.00 3.41
6243 7207 3.129262 TGATGTACTCCCTCCAATCCA 57.871 47.619 0.00 0.00 0.00 3.41
6244 7208 3.456277 AGTTGATGTACTCCCTCCAATCC 59.544 47.826 0.00 0.00 0.00 3.01
6245 7209 4.762289 AGTTGATGTACTCCCTCCAATC 57.238 45.455 0.00 0.00 0.00 2.67
6246 7210 6.831664 AATAGTTGATGTACTCCCTCCAAT 57.168 37.500 0.00 0.00 0.00 3.16
6247 7211 6.636454 AAATAGTTGATGTACTCCCTCCAA 57.364 37.500 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.