Multiple sequence alignment - TraesCS4A01G050100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G050100 chr4A 100.000 4081 0 0 1 4081 40870869 40874949 0.000000e+00 7537.0
1 TraesCS4A01G050100 chr4A 99.074 108 1 0 3353 3460 255332225 255332118 1.160000e-45 195.0
2 TraesCS4A01G050100 chr4B 92.395 2919 152 35 450 3354 519800751 519797889 0.000000e+00 4096.0
3 TraesCS4A01G050100 chr4B 93.443 427 20 4 3458 3877 519797890 519797465 9.630000e-176 627.0
4 TraesCS4A01G050100 chr4B 88.031 259 26 4 195 449 519803640 519803383 6.630000e-78 302.0
5 TraesCS4A01G050100 chr4B 90.811 185 14 2 3899 4081 519797364 519797181 1.130000e-60 244.0
6 TraesCS4A01G050100 chr4D 93.339 2447 119 16 911 3353 423387798 423385392 0.000000e+00 3576.0
7 TraesCS4A01G050100 chr4D 87.797 631 52 9 193 819 423388817 423388208 0.000000e+00 715.0
8 TraesCS4A01G050100 chr4D 81.965 621 59 19 3506 4081 423385356 423384744 1.030000e-130 477.0
9 TraesCS4A01G050100 chr4D 97.826 46 1 0 194 239 102162154 102162109 3.380000e-11 80.5
10 TraesCS4A01G050100 chr3D 93.909 197 12 0 1 197 342618126 342617930 8.580000e-77 298.0
11 TraesCS4A01G050100 chr3D 94.301 193 11 0 1 193 465195834 465196026 3.080000e-76 296.0
12 TraesCS4A01G050100 chr1D 93.909 197 12 0 1 197 448103329 448103133 8.580000e-77 298.0
13 TraesCS4A01G050100 chr6D 93.814 194 12 0 1 194 376838057 376838250 3.990000e-75 292.0
14 TraesCS4A01G050100 chr5B 93.401 197 13 0 1 197 183772266 183772070 3.990000e-75 292.0
15 TraesCS4A01G050100 chr2B 93.814 194 12 0 1 194 462205218 462205411 3.990000e-75 292.0
16 TraesCS4A01G050100 chr7D 93.401 197 12 1 1 197 473622698 473622893 1.440000e-74 291.0
17 TraesCS4A01G050100 chr3A 91.943 211 12 4 1 209 579047311 579047518 1.440000e-74 291.0
18 TraesCS4A01G050100 chr3A 92.965 199 14 0 1 199 606609414 606609216 1.440000e-74 291.0
19 TraesCS4A01G050100 chr3A 99.065 107 1 0 3353 3459 402126395 402126289 4.160000e-45 193.0
20 TraesCS4A01G050100 chr3A 95.575 113 5 0 3348 3460 51697423 51697535 9.010000e-42 182.0
21 TraesCS4A01G050100 chr5A 99.074 108 1 0 3352 3459 411889312 411889205 1.160000e-45 195.0
22 TraesCS4A01G050100 chr5A 98.131 107 2 0 3350 3456 585094185 585094291 1.940000e-43 187.0
23 TraesCS4A01G050100 chr5A 98.131 107 2 0 3353 3459 612173493 612173599 1.940000e-43 187.0
24 TraesCS4A01G050100 chr6A 96.491 114 4 0 3346 3459 21048275 21048388 5.380000e-44 189.0
25 TraesCS4A01G050100 chr7A 98.131 107 2 0 3353 3459 532357000 532357106 1.940000e-43 187.0
26 TraesCS4A01G050100 chr2A 99.038 104 1 0 3353 3456 523072537 523072640 1.940000e-43 187.0
27 TraesCS4A01G050100 chr3B 93.878 49 2 1 194 241 166686633 166686681 5.660000e-09 73.1
28 TraesCS4A01G050100 chr3B 91.667 48 4 0 194 241 690110662 690110709 2.630000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G050100 chr4A 40870869 40874949 4080 False 7537.000000 7537 100.000000 1 4081 1 chr4A.!!$F1 4080
1 TraesCS4A01G050100 chr4B 519797181 519803640 6459 True 1317.250000 4096 91.170000 195 4081 4 chr4B.!!$R1 3886
2 TraesCS4A01G050100 chr4D 423384744 423388817 4073 True 1589.333333 3576 87.700333 193 4081 3 chr4D.!!$R2 3888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 292 0.103937 GATCTTCAGAGCTGACCGGG 59.896 60.0 6.32 0.0 39.66 5.73 F
908 3553 0.172127 TTGCACAAGCGCAAGAAACA 59.828 45.0 11.47 0.0 46.61 2.83 F
1173 4138 0.523546 CTTACAGCGAGCACGACGAT 60.524 55.0 8.01 0.0 42.66 3.73 F
2764 5729 0.038159 GGTAGGAAGGGATGATCGCG 60.038 60.0 0.00 0.0 34.19 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 4945 0.107945 GGAGGAGCAAGCAGTCGATT 60.108 55.0 0.0 0.0 0.0 3.34 R
2173 5138 0.179018 ACTGCTTCCTTTGCTTCCGT 60.179 50.0 0.0 0.0 0.0 4.69 R
2852 5817 0.537188 TTCCTCCTCGCTTCCATCAC 59.463 55.0 0.0 0.0 0.0 3.06 R
3954 7023 0.472471 ACCGCCTTTTGTTCCTCTCA 59.528 50.0 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.970317 GCCATCATATCATGTCAATCCAA 57.030 39.130 0.00 0.00 0.00 3.53
23 24 5.706916 GCCATCATATCATGTCAATCCAAC 58.293 41.667 0.00 0.00 0.00 3.77
24 25 5.618418 GCCATCATATCATGTCAATCCAACG 60.618 44.000 0.00 0.00 0.00 4.10
25 26 5.702209 CCATCATATCATGTCAATCCAACGA 59.298 40.000 0.00 0.00 0.00 3.85
26 27 6.205270 CCATCATATCATGTCAATCCAACGAA 59.795 38.462 0.00 0.00 0.00 3.85
27 28 6.603237 TCATATCATGTCAATCCAACGAAC 57.397 37.500 0.00 0.00 0.00 3.95
28 29 6.348498 TCATATCATGTCAATCCAACGAACT 58.652 36.000 0.00 0.00 0.00 3.01
29 30 7.496747 TCATATCATGTCAATCCAACGAACTA 58.503 34.615 0.00 0.00 0.00 2.24
30 31 7.653311 TCATATCATGTCAATCCAACGAACTAG 59.347 37.037 0.00 0.00 0.00 2.57
31 32 5.400066 TCATGTCAATCCAACGAACTAGA 57.600 39.130 0.00 0.00 0.00 2.43
32 33 5.168569 TCATGTCAATCCAACGAACTAGAC 58.831 41.667 0.00 0.00 0.00 2.59
33 34 4.866508 TGTCAATCCAACGAACTAGACT 57.133 40.909 0.00 0.00 0.00 3.24
34 35 4.556233 TGTCAATCCAACGAACTAGACTG 58.444 43.478 0.00 0.00 0.00 3.51
35 36 3.368236 GTCAATCCAACGAACTAGACTGC 59.632 47.826 0.00 0.00 0.00 4.40
36 37 3.258372 TCAATCCAACGAACTAGACTGCT 59.742 43.478 0.00 0.00 0.00 4.24
37 38 3.963428 ATCCAACGAACTAGACTGCTT 57.037 42.857 0.00 0.00 0.00 3.91
38 39 3.299340 TCCAACGAACTAGACTGCTTC 57.701 47.619 0.00 0.00 0.00 3.86
39 40 2.626266 TCCAACGAACTAGACTGCTTCA 59.374 45.455 0.00 0.00 0.00 3.02
40 41 3.069016 TCCAACGAACTAGACTGCTTCAA 59.931 43.478 0.00 0.00 0.00 2.69
41 42 3.997021 CCAACGAACTAGACTGCTTCAAT 59.003 43.478 0.00 0.00 0.00 2.57
42 43 4.143030 CCAACGAACTAGACTGCTTCAATG 60.143 45.833 0.00 0.00 0.00 2.82
43 44 4.258702 ACGAACTAGACTGCTTCAATGT 57.741 40.909 0.00 0.00 0.00 2.71
44 45 4.238514 ACGAACTAGACTGCTTCAATGTC 58.761 43.478 0.00 0.00 0.00 3.06
45 46 3.301906 CGAACTAGACTGCTTCAATGTCG 59.698 47.826 0.00 0.00 36.01 4.35
46 47 4.486090 GAACTAGACTGCTTCAATGTCGA 58.514 43.478 0.00 0.00 36.01 4.20
47 48 4.103365 ACTAGACTGCTTCAATGTCGAG 57.897 45.455 0.00 0.00 38.68 4.04
48 49 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
49 50 0.368227 GACTGCTTCAATGTCGAGCG 59.632 55.000 0.00 0.00 39.23 5.03
50 51 1.059994 CTGCTTCAATGTCGAGCGC 59.940 57.895 0.00 0.00 39.23 5.92
51 52 1.357258 CTGCTTCAATGTCGAGCGCT 61.357 55.000 11.27 11.27 39.23 5.92
52 53 1.346538 GCTTCAATGTCGAGCGCTC 59.653 57.895 27.64 27.64 0.00 5.03
53 54 1.354337 GCTTCAATGTCGAGCGCTCA 61.354 55.000 34.69 18.66 0.00 4.26
54 55 1.070821 CTTCAATGTCGAGCGCTCAA 58.929 50.000 34.69 17.41 0.00 3.02
55 56 0.790207 TTCAATGTCGAGCGCTCAAC 59.210 50.000 34.69 28.50 0.00 3.18
56 57 0.319469 TCAATGTCGAGCGCTCAACA 60.319 50.000 31.47 31.47 0.00 3.33
57 58 0.179240 CAATGTCGAGCGCTCAACAC 60.179 55.000 31.93 24.81 0.00 3.32
58 59 0.599991 AATGTCGAGCGCTCAACACA 60.600 50.000 31.93 28.98 0.00 3.72
59 60 0.390340 ATGTCGAGCGCTCAACACAT 60.390 50.000 31.93 29.73 0.00 3.21
60 61 0.599991 TGTCGAGCGCTCAACACATT 60.600 50.000 34.69 0.00 0.00 2.71
61 62 0.512952 GTCGAGCGCTCAACACATTT 59.487 50.000 34.69 0.00 0.00 2.32
62 63 1.724623 GTCGAGCGCTCAACACATTTA 59.275 47.619 34.69 7.19 0.00 1.40
63 64 2.156891 GTCGAGCGCTCAACACATTTAA 59.843 45.455 34.69 5.71 0.00 1.52
64 65 2.156891 TCGAGCGCTCAACACATTTAAC 59.843 45.455 34.69 6.02 0.00 2.01
65 66 2.495939 GAGCGCTCAACACATTTAACG 58.504 47.619 31.91 0.00 0.00 3.18
66 67 1.871039 AGCGCTCAACACATTTAACGT 59.129 42.857 2.64 0.00 0.00 3.99
67 68 1.969256 GCGCTCAACACATTTAACGTG 59.031 47.619 0.00 3.23 40.32 4.49
68 69 1.969256 CGCTCAACACATTTAACGTGC 59.031 47.619 0.00 0.00 37.93 5.34
69 70 2.601029 CGCTCAACACATTTAACGTGCA 60.601 45.455 0.00 0.00 37.93 4.57
70 71 2.973224 GCTCAACACATTTAACGTGCAG 59.027 45.455 0.00 1.01 37.93 4.41
71 72 3.548014 GCTCAACACATTTAACGTGCAGT 60.548 43.478 0.00 0.00 37.93 4.40
72 73 4.597079 CTCAACACATTTAACGTGCAGTT 58.403 39.130 0.00 6.74 46.36 3.16
73 74 5.736486 TCAACACATTTAACGTGCAGTTA 57.264 34.783 0.00 0.00 43.86 2.24
83 84 3.216147 ACGTGCAGTTAATTTCATGCC 57.784 42.857 0.00 0.00 37.89 4.40
84 85 2.556189 ACGTGCAGTTAATTTCATGCCA 59.444 40.909 0.00 0.00 37.89 4.92
85 86 3.005261 ACGTGCAGTTAATTTCATGCCAA 59.995 39.130 0.00 0.00 37.89 4.52
86 87 3.986572 CGTGCAGTTAATTTCATGCCAAA 59.013 39.130 0.00 0.00 37.89 3.28
87 88 4.626604 CGTGCAGTTAATTTCATGCCAAAT 59.373 37.500 0.00 0.00 37.89 2.32
88 89 5.804473 CGTGCAGTTAATTTCATGCCAAATA 59.196 36.000 0.00 0.00 37.89 1.40
89 90 6.476380 CGTGCAGTTAATTTCATGCCAAATAT 59.524 34.615 0.00 0.00 37.89 1.28
90 91 7.647318 CGTGCAGTTAATTTCATGCCAAATATA 59.353 33.333 0.00 0.00 37.89 0.86
91 92 8.971321 GTGCAGTTAATTTCATGCCAAATATAG 58.029 33.333 0.00 0.00 37.89 1.31
92 93 8.694540 TGCAGTTAATTTCATGCCAAATATAGT 58.305 29.630 6.13 0.00 37.89 2.12
93 94 8.971321 GCAGTTAATTTCATGCCAAATATAGTG 58.029 33.333 0.00 0.00 32.49 2.74
174 175 7.775397 ATACTTCCAAATTAACATGCATTGC 57.225 32.000 0.00 0.46 0.00 3.56
175 176 5.549347 ACTTCCAAATTAACATGCATTGCA 58.451 33.333 14.72 14.72 44.86 4.08
176 177 5.409214 ACTTCCAAATTAACATGCATTGCAC 59.591 36.000 14.66 0.00 43.04 4.57
177 178 3.925299 TCCAAATTAACATGCATTGCACG 59.075 39.130 14.66 8.59 43.04 5.34
178 179 3.679025 CCAAATTAACATGCATTGCACGT 59.321 39.130 14.66 9.40 43.04 4.49
179 180 4.861462 CCAAATTAACATGCATTGCACGTA 59.139 37.500 14.66 3.65 43.04 3.57
180 181 5.220191 CCAAATTAACATGCATTGCACGTAC 60.220 40.000 14.66 0.00 43.04 3.67
181 182 4.693538 ATTAACATGCATTGCACGTACA 57.306 36.364 14.66 2.32 43.04 2.90
182 183 2.330231 AACATGCATTGCACGTACAC 57.670 45.000 14.66 0.00 43.04 2.90
183 184 1.522668 ACATGCATTGCACGTACACT 58.477 45.000 14.66 0.00 43.04 3.55
184 185 1.879380 ACATGCATTGCACGTACACTT 59.121 42.857 14.66 0.00 43.04 3.16
185 186 2.293122 ACATGCATTGCACGTACACTTT 59.707 40.909 14.66 0.00 43.04 2.66
186 187 2.397777 TGCATTGCACGTACACTTTG 57.602 45.000 7.38 0.00 31.71 2.77
187 188 1.943340 TGCATTGCACGTACACTTTGA 59.057 42.857 7.38 0.00 31.71 2.69
188 189 2.286713 TGCATTGCACGTACACTTTGAC 60.287 45.455 7.38 0.00 31.71 3.18
189 190 2.032030 GCATTGCACGTACACTTTGACT 60.032 45.455 3.15 0.00 0.00 3.41
190 191 3.185594 GCATTGCACGTACACTTTGACTA 59.814 43.478 3.15 0.00 0.00 2.59
191 192 4.666655 GCATTGCACGTACACTTTGACTAG 60.667 45.833 3.15 0.00 0.00 2.57
227 230 6.377146 GGGCAAGAGTTTGAGGTTGAAATATA 59.623 38.462 0.00 0.00 36.36 0.86
253 256 4.451629 TCTCTCTTTATCCAACGGTGAC 57.548 45.455 0.00 0.00 0.00 3.67
259 262 4.282449 TCTTTATCCAACGGTGACAGAGAA 59.718 41.667 0.00 0.00 0.00 2.87
271 274 3.259374 GTGACAGAGAAAGGAGTCATGGA 59.741 47.826 0.00 0.00 42.28 3.41
289 292 0.103937 GATCTTCAGAGCTGACCGGG 59.896 60.000 6.32 0.00 39.66 5.73
337 341 8.896320 AAACTGAAACCAAACTAAACTTGTTT 57.104 26.923 4.14 4.14 38.04 2.83
338 342 8.896320 AACTGAAACCAAACTAAACTTGTTTT 57.104 26.923 4.00 0.00 35.71 2.43
355 359 9.713713 AACTTGTTTTAAACTTACAACATTGGT 57.286 25.926 9.33 1.57 34.45 3.67
383 387 0.969149 CACCTGAGTGCCACTGTCTA 59.031 55.000 0.00 0.00 37.14 2.59
396 400 4.941263 GCCACTGTCTATGGTTTACAATCA 59.059 41.667 0.00 0.00 39.63 2.57
427 431 8.983724 CGAATTTCAGGATAGGTTTATCTCTTC 58.016 37.037 0.00 0.00 36.67 2.87
440 445 8.160106 AGGTTTATCTCTTCAGATTTGTTGACT 58.840 33.333 0.00 0.00 40.18 3.41
453 3089 7.379529 CAGATTTGTTGACTCCATTGTTGTTAC 59.620 37.037 0.00 0.00 0.00 2.50
481 3117 2.481568 GCTACGGTCCAACAAGTAAACC 59.518 50.000 0.00 0.00 0.00 3.27
589 3228 3.074412 ACCTTTACCTGCTCAACATTCG 58.926 45.455 0.00 0.00 0.00 3.34
590 3229 3.244422 ACCTTTACCTGCTCAACATTCGA 60.244 43.478 0.00 0.00 0.00 3.71
624 3263 4.437121 GCTACCTCGTACTACTGAAGTGTG 60.437 50.000 0.00 0.00 39.39 3.82
637 3276 1.726791 GAAGTGTGTATGCAGGTGTCG 59.273 52.381 0.00 0.00 0.00 4.35
675 3314 4.745649 AGTACTAATTCAGGTTCGCAGTC 58.254 43.478 0.00 0.00 0.00 3.51
691 3331 4.994852 TCGCAGTCTGCAATATATTAACCC 59.005 41.667 24.13 0.00 45.36 4.11
692 3332 4.997395 CGCAGTCTGCAATATATTAACCCT 59.003 41.667 24.13 0.00 45.36 4.34
698 3338 8.220559 AGTCTGCAATATATTAACCCTGAACAT 58.779 33.333 0.00 0.00 0.00 2.71
708 3348 6.870971 TTAACCCTGAACATCAGTAACAAC 57.129 37.500 6.62 0.00 42.80 3.32
709 3349 4.431416 ACCCTGAACATCAGTAACAACA 57.569 40.909 6.62 0.00 42.80 3.33
710 3350 4.985538 ACCCTGAACATCAGTAACAACAT 58.014 39.130 6.62 0.00 42.80 2.71
731 3371 4.286297 TGATCTGAAAAGTTCATCCCGT 57.714 40.909 0.00 0.00 39.30 5.28
736 3376 0.958876 AAAAGTTCATCCCGTCCGGC 60.959 55.000 0.00 0.00 0.00 6.13
748 3388 1.148157 CGTCCGGCTGCTGAACATAG 61.148 60.000 10.70 0.00 0.00 2.23
750 3390 0.461548 TCCGGCTGCTGAACATAGAG 59.538 55.000 10.70 0.00 0.00 2.43
758 3398 4.092675 GCTGCTGAACATAGAGAACAGTTC 59.907 45.833 5.00 5.00 40.45 3.01
760 3400 4.040339 TGCTGAACATAGAGAACAGTTCCA 59.960 41.667 9.85 0.00 39.57 3.53
790 3430 7.428826 CCTGAAAAGAAGTTAACAAGAGCATT 58.571 34.615 8.61 0.00 0.00 3.56
800 3440 9.696917 AAGTTAACAAGAGCATTAAAAATCCAG 57.303 29.630 8.61 0.00 0.00 3.86
816 3456 4.833478 ATCCAGTGCTAATTGACTGACT 57.167 40.909 13.03 0.00 41.90 3.41
820 3460 4.940046 CCAGTGCTAATTGACTGACTGATT 59.060 41.667 13.03 0.00 41.90 2.57
821 3461 5.163784 CCAGTGCTAATTGACTGACTGATTG 60.164 44.000 13.03 0.00 41.90 2.67
822 3462 5.410746 CAGTGCTAATTGACTGACTGATTGT 59.589 40.000 7.87 0.00 41.90 2.71
823 3463 5.410746 AGTGCTAATTGACTGACTGATTGTG 59.589 40.000 0.00 0.00 0.00 3.33
863 3508 4.286291 CCCACTTCTACAAAACCCTACTCT 59.714 45.833 0.00 0.00 0.00 3.24
867 3512 6.015350 CACTTCTACAAAACCCTACTCTCTCA 60.015 42.308 0.00 0.00 0.00 3.27
870 3515 4.608948 ACAAAACCCTACTCTCTCACTG 57.391 45.455 0.00 0.00 0.00 3.66
871 3516 3.244249 ACAAAACCCTACTCTCTCACTGC 60.244 47.826 0.00 0.00 0.00 4.40
872 3517 2.614134 AACCCTACTCTCTCACTGCT 57.386 50.000 0.00 0.00 0.00 4.24
873 3518 2.614134 ACCCTACTCTCTCACTGCTT 57.386 50.000 0.00 0.00 0.00 3.91
874 3519 2.452505 ACCCTACTCTCTCACTGCTTC 58.547 52.381 0.00 0.00 0.00 3.86
875 3520 2.042433 ACCCTACTCTCTCACTGCTTCT 59.958 50.000 0.00 0.00 0.00 2.85
876 3521 2.687935 CCCTACTCTCTCACTGCTTCTC 59.312 54.545 0.00 0.00 0.00 2.87
877 3522 3.620488 CCTACTCTCTCACTGCTTCTCT 58.380 50.000 0.00 0.00 0.00 3.10
878 3523 4.016444 CCTACTCTCTCACTGCTTCTCTT 58.984 47.826 0.00 0.00 0.00 2.85
879 3524 4.096382 CCTACTCTCTCACTGCTTCTCTTC 59.904 50.000 0.00 0.00 0.00 2.87
880 3525 2.825532 ACTCTCTCACTGCTTCTCTTCC 59.174 50.000 0.00 0.00 0.00 3.46
881 3526 3.091545 CTCTCTCACTGCTTCTCTTCCT 58.908 50.000 0.00 0.00 0.00 3.36
882 3527 3.505386 TCTCTCACTGCTTCTCTTCCTT 58.495 45.455 0.00 0.00 0.00 3.36
883 3528 3.509575 TCTCTCACTGCTTCTCTTCCTTC 59.490 47.826 0.00 0.00 0.00 3.46
884 3529 3.505386 TCTCACTGCTTCTCTTCCTTCT 58.495 45.455 0.00 0.00 0.00 2.85
885 3530 4.667573 TCTCACTGCTTCTCTTCCTTCTA 58.332 43.478 0.00 0.00 0.00 2.10
887 3532 3.511934 TCACTGCTTCTCTTCCTTCTACC 59.488 47.826 0.00 0.00 0.00 3.18
891 3536 3.261897 TGCTTCTCTTCCTTCTACCCTTG 59.738 47.826 0.00 0.00 0.00 3.61
892 3537 3.867857 CTTCTCTTCCTTCTACCCTTGC 58.132 50.000 0.00 0.00 0.00 4.01
897 3542 2.859165 TCCTTCTACCCTTGCACAAG 57.141 50.000 3.32 3.32 38.14 3.16
899 3544 0.798776 CTTCTACCCTTGCACAAGCG 59.201 55.000 4.82 0.00 46.23 4.68
908 3553 0.172127 TTGCACAAGCGCAAGAAACA 59.828 45.000 11.47 0.00 46.61 2.83
909 3554 0.172127 TGCACAAGCGCAAGAAACAA 59.828 45.000 11.47 0.00 46.23 2.83
972 3931 1.238439 CCACCAGAAACGTGCAATCT 58.762 50.000 0.00 0.00 0.00 2.40
1027 3986 0.825840 GATCGTGGAGGAGGAGGAGG 60.826 65.000 0.00 0.00 0.00 4.30
1030 3989 1.760480 GTGGAGGAGGAGGAGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
1044 4003 1.760480 GGAGCAGGAGGAGGAGGAC 60.760 68.421 0.00 0.00 0.00 3.85
1045 4004 2.043450 AGCAGGAGGAGGAGGACG 60.043 66.667 0.00 0.00 0.00 4.79
1046 4005 2.043852 GCAGGAGGAGGAGGACGA 60.044 66.667 0.00 0.00 0.00 4.20
1047 4006 2.419739 GCAGGAGGAGGAGGACGAC 61.420 68.421 0.00 0.00 0.00 4.34
1048 4007 2.115911 CAGGAGGAGGAGGACGACG 61.116 68.421 0.00 0.00 0.00 5.12
1049 4008 2.271497 GGAGGAGGAGGACGACGA 59.729 66.667 0.00 0.00 0.00 4.20
1050 4009 1.820481 GGAGGAGGAGGACGACGAG 60.820 68.421 0.00 0.00 0.00 4.18
1051 4010 1.820481 GAGGAGGAGGACGACGAGG 60.820 68.421 0.00 0.00 0.00 4.63
1052 4011 3.519930 GGAGGAGGACGACGAGGC 61.520 72.222 0.00 0.00 0.00 4.70
1095 4060 1.428219 CTGCTTCTTCTGCGCCATG 59.572 57.895 4.18 0.00 0.00 3.66
1173 4138 0.523546 CTTACAGCGAGCACGACGAT 60.524 55.000 8.01 0.00 42.66 3.73
1275 4240 2.060383 CATGTCCCTCCTCCTCGCA 61.060 63.158 0.00 0.00 0.00 5.10
1458 4423 4.796231 ATGACGTGGGTCGAGCGC 62.796 66.667 8.77 0.00 46.49 5.92
1990 4955 1.208052 AGTACATGGCAATCGACTGCT 59.792 47.619 19.29 0.75 42.25 4.24
2012 4977 2.829458 CCTCCTCCTCGACGACCC 60.829 72.222 0.00 0.00 0.00 4.46
2229 5194 4.611367 AGGTAAAGATCGAGAGGAAGGAA 58.389 43.478 0.00 0.00 0.00 3.36
2238 5203 2.167487 CGAGAGGAAGGAAAGGGAAGAG 59.833 54.545 0.00 0.00 0.00 2.85
2306 5271 1.801178 GAAGAAGAGACAAGGCAACGG 59.199 52.381 0.00 0.00 46.39 4.44
2628 5593 4.323477 CGGAAGCACGGGGGACAA 62.323 66.667 0.00 0.00 0.00 3.18
2630 5595 2.671963 GAAGCACGGGGGACAACC 60.672 66.667 0.00 0.00 39.11 3.77
2701 5666 3.234353 AGGATGATCGGTAAGCAGATGA 58.766 45.455 0.00 0.00 29.85 2.92
2764 5729 0.038159 GGTAGGAAGGGATGATCGCG 60.038 60.000 0.00 0.00 34.19 5.87
2780 5745 2.815722 GCGTAGGAAGCGATGATCC 58.184 57.895 0.00 0.00 35.88 3.36
2908 5873 5.568620 ACTGAGGTTTTGTAGATCAGGTT 57.431 39.130 5.59 0.00 41.32 3.50
2909 5874 6.681729 ACTGAGGTTTTGTAGATCAGGTTA 57.318 37.500 5.59 0.00 41.32 2.85
2910 5875 6.702329 ACTGAGGTTTTGTAGATCAGGTTAG 58.298 40.000 5.59 0.00 41.32 2.34
2911 5876 5.488341 TGAGGTTTTGTAGATCAGGTTAGC 58.512 41.667 0.00 0.00 0.00 3.09
2965 5930 6.709643 CAACACCTATCTTTAATCTTGCGAG 58.290 40.000 0.00 0.00 0.00 5.03
2975 5940 2.496899 ATCTTGCGAGGTTGATTGGT 57.503 45.000 0.00 0.00 0.00 3.67
2979 5944 4.439057 TCTTGCGAGGTTGATTGGTATAC 58.561 43.478 0.00 0.00 0.00 1.47
3096 6065 5.865085 AGATGTGAAGTGTAAACAGCCTTA 58.135 37.500 0.00 0.00 30.64 2.69
3107 6076 7.716998 AGTGTAAACAGCCTTATTATCTCATGG 59.283 37.037 0.00 0.00 0.00 3.66
3187 6157 1.129437 GCGAGAGTGGTTGCTGAATTC 59.871 52.381 0.00 0.00 0.00 2.17
3192 6162 0.593128 GTGGTTGCTGAATTCGCTGT 59.407 50.000 18.44 0.00 0.00 4.40
3196 6166 4.273480 GTGGTTGCTGAATTCGCTGTATAT 59.727 41.667 18.44 0.00 0.00 0.86
3234 6204 5.355350 GTCACTTGTAGCCTTTGCATTCTAT 59.645 40.000 0.00 0.00 41.13 1.98
3274 6244 8.016301 TCTACATGACTTAGCAAGAGAATGAT 57.984 34.615 0.00 0.00 0.00 2.45
3285 6255 2.219458 AGAGAATGATCTGCCGCATTG 58.781 47.619 0.00 0.00 35.54 2.82
3354 6324 6.144402 CCACAAAGTTGAGCACAATCAAATAC 59.856 38.462 0.00 0.00 40.72 1.89
3355 6325 6.919662 CACAAAGTTGAGCACAATCAAATACT 59.080 34.615 0.00 0.00 40.72 2.12
3356 6326 7.113965 CACAAAGTTGAGCACAATCAAATACTC 59.886 37.037 0.00 0.00 40.72 2.59
3357 6327 5.886960 AGTTGAGCACAATCAAATACTCC 57.113 39.130 0.00 0.00 40.72 3.85
3358 6328 4.702131 AGTTGAGCACAATCAAATACTCCC 59.298 41.667 0.00 0.00 40.72 4.30
3359 6329 4.574674 TGAGCACAATCAAATACTCCCT 57.425 40.909 0.00 0.00 0.00 4.20
3360 6330 4.517285 TGAGCACAATCAAATACTCCCTC 58.483 43.478 0.00 0.00 0.00 4.30
3361 6331 3.879892 GAGCACAATCAAATACTCCCTCC 59.120 47.826 0.00 0.00 0.00 4.30
3362 6332 2.614057 GCACAATCAAATACTCCCTCCG 59.386 50.000 0.00 0.00 0.00 4.63
3363 6333 3.873910 CACAATCAAATACTCCCTCCGT 58.126 45.455 0.00 0.00 0.00 4.69
3364 6334 4.261801 CACAATCAAATACTCCCTCCGTT 58.738 43.478 0.00 0.00 0.00 4.44
3365 6335 4.332819 CACAATCAAATACTCCCTCCGTTC 59.667 45.833 0.00 0.00 0.00 3.95
3366 6336 2.953466 TCAAATACTCCCTCCGTTCG 57.047 50.000 0.00 0.00 0.00 3.95
3367 6337 1.479323 TCAAATACTCCCTCCGTTCGG 59.521 52.381 4.74 4.74 0.00 4.30
3368 6338 1.479323 CAAATACTCCCTCCGTTCGGA 59.521 52.381 13.34 13.34 0.00 4.55
3369 6339 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
3370 6340 1.856629 ATACTCCCTCCGTTCGGAAA 58.143 50.000 14.79 3.49 33.41 3.13
3371 6341 1.856629 TACTCCCTCCGTTCGGAAAT 58.143 50.000 14.79 2.39 33.41 2.17
3372 6342 1.856629 ACTCCCTCCGTTCGGAAATA 58.143 50.000 14.79 2.82 33.41 1.40
3373 6343 1.479730 ACTCCCTCCGTTCGGAAATAC 59.520 52.381 14.79 0.00 33.41 1.89
3374 6344 1.755380 CTCCCTCCGTTCGGAAATACT 59.245 52.381 14.79 0.00 33.41 2.12
3375 6345 2.167900 CTCCCTCCGTTCGGAAATACTT 59.832 50.000 14.79 0.00 33.41 2.24
3376 6346 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3377 6347 2.354403 CCCTCCGTTCGGAAATACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3378 6348 2.928116 CCTCCGTTCGGAAATACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3379 6349 2.928116 CTCCGTTCGGAAATACTTGTCC 59.072 50.000 14.79 0.00 33.41 4.02
3380 6350 2.564062 TCCGTTCGGAAATACTTGTCCT 59.436 45.455 11.66 0.00 0.00 3.85
3381 6351 3.763360 TCCGTTCGGAAATACTTGTCCTA 59.237 43.478 11.66 0.00 0.00 2.94
3382 6352 4.110482 CCGTTCGGAAATACTTGTCCTAG 58.890 47.826 5.19 0.00 0.00 3.02
3383 6353 4.142315 CCGTTCGGAAATACTTGTCCTAGA 60.142 45.833 5.19 0.00 0.00 2.43
3384 6354 5.404946 CGTTCGGAAATACTTGTCCTAGAA 58.595 41.667 0.00 0.00 0.00 2.10
3385 6355 5.865552 CGTTCGGAAATACTTGTCCTAGAAA 59.134 40.000 0.00 0.00 0.00 2.52
3386 6356 6.534079 CGTTCGGAAATACTTGTCCTAGAAAT 59.466 38.462 0.00 0.00 0.00 2.17
3387 6357 7.464178 CGTTCGGAAATACTTGTCCTAGAAATG 60.464 40.741 0.00 0.00 0.00 2.32
3388 6358 6.346096 TCGGAAATACTTGTCCTAGAAATGG 58.654 40.000 0.00 0.00 0.00 3.16
3389 6359 6.070424 TCGGAAATACTTGTCCTAGAAATGGT 60.070 38.462 0.00 0.00 0.00 3.55
3390 6360 6.598064 CGGAAATACTTGTCCTAGAAATGGTT 59.402 38.462 0.00 0.00 0.00 3.67
3391 6361 7.414098 CGGAAATACTTGTCCTAGAAATGGTTG 60.414 40.741 0.00 0.00 0.00 3.77
3392 6362 7.393515 GGAAATACTTGTCCTAGAAATGGTTGT 59.606 37.037 0.00 0.00 0.00 3.32
3393 6363 9.444600 GAAATACTTGTCCTAGAAATGGTTGTA 57.555 33.333 0.00 0.00 0.00 2.41
3394 6364 9.975218 AAATACTTGTCCTAGAAATGGTTGTAT 57.025 29.630 0.00 0.00 0.00 2.29
3395 6365 9.614792 AATACTTGTCCTAGAAATGGTTGTATC 57.385 33.333 0.00 0.00 0.00 2.24
3396 6366 7.259088 ACTTGTCCTAGAAATGGTTGTATCT 57.741 36.000 0.00 0.00 0.00 1.98
3397 6367 8.375493 ACTTGTCCTAGAAATGGTTGTATCTA 57.625 34.615 0.00 0.00 0.00 1.98
3398 6368 8.478877 ACTTGTCCTAGAAATGGTTGTATCTAG 58.521 37.037 0.00 0.00 40.55 2.43
3399 6369 8.603898 TTGTCCTAGAAATGGTTGTATCTAGA 57.396 34.615 9.60 0.00 42.48 2.43
3400 6370 8.008513 TGTCCTAGAAATGGTTGTATCTAGAC 57.991 38.462 9.60 7.06 42.48 2.59
3401 6371 7.839705 TGTCCTAGAAATGGTTGTATCTAGACT 59.160 37.037 9.60 0.00 42.48 3.24
3402 6372 8.697292 GTCCTAGAAATGGTTGTATCTAGACTT 58.303 37.037 9.60 0.00 42.48 3.01
3403 6373 8.696374 TCCTAGAAATGGTTGTATCTAGACTTG 58.304 37.037 9.60 0.00 42.48 3.16
3404 6374 8.478877 CCTAGAAATGGTTGTATCTAGACTTGT 58.521 37.037 9.60 0.00 42.48 3.16
3405 6375 9.877178 CTAGAAATGGTTGTATCTAGACTTGTT 57.123 33.333 0.00 0.00 42.48 2.83
3407 6377 9.574516 AGAAATGGTTGTATCTAGACTTGTTTT 57.425 29.630 0.00 0.00 0.00 2.43
3412 6382 9.485206 TGGTTGTATCTAGACTTGTTTTAGTTC 57.515 33.333 0.00 0.00 0.00 3.01
3413 6383 9.708092 GGTTGTATCTAGACTTGTTTTAGTTCT 57.292 33.333 0.00 0.00 0.00 3.01
3423 6393 9.708092 AGACTTGTTTTAGTTCTAGATACAACC 57.292 33.333 0.00 0.00 0.00 3.77
3424 6394 9.485206 GACTTGTTTTAGTTCTAGATACAACCA 57.515 33.333 0.00 0.00 0.00 3.67
3435 6405 9.871238 GTTCTAGATACAACCATTTCTAAGACA 57.129 33.333 0.00 0.00 0.00 3.41
3438 6408 9.877178 CTAGATACAACCATTTCTAAGACAAGT 57.123 33.333 0.00 0.00 0.00 3.16
3444 6414 8.793592 ACAACCATTTCTAAGACAAGTATTTCC 58.206 33.333 0.00 0.00 0.00 3.13
3445 6415 7.611213 ACCATTTCTAAGACAAGTATTTCCG 57.389 36.000 0.00 0.00 0.00 4.30
3446 6416 7.391620 ACCATTTCTAAGACAAGTATTTCCGA 58.608 34.615 0.00 0.00 0.00 4.55
3447 6417 7.881232 ACCATTTCTAAGACAAGTATTTCCGAA 59.119 33.333 0.00 0.00 0.00 4.30
3448 6418 8.893727 CCATTTCTAAGACAAGTATTTCCGAAT 58.106 33.333 0.00 0.00 0.00 3.34
3449 6419 9.708222 CATTTCTAAGACAAGTATTTCCGAATG 57.292 33.333 0.00 0.00 0.00 2.67
3450 6420 7.843490 TTCTAAGACAAGTATTTCCGAATGG 57.157 36.000 0.00 0.00 0.00 3.16
3451 6421 7.177832 TCTAAGACAAGTATTTCCGAATGGA 57.822 36.000 0.00 0.00 44.61 3.41
3460 6430 2.822215 TCCGAATGGAGGGAGTAGC 58.178 57.895 0.00 0.00 40.17 3.58
3461 6431 0.032515 TCCGAATGGAGGGAGTAGCA 60.033 55.000 0.00 0.00 40.17 3.49
3462 6432 0.390860 CCGAATGGAGGGAGTAGCAG 59.609 60.000 0.00 0.00 37.49 4.24
3463 6433 0.249657 CGAATGGAGGGAGTAGCAGC 60.250 60.000 0.00 0.00 0.00 5.25
3475 6445 4.201822 GGGAGTAGCAGCGTTCAAAAATAG 60.202 45.833 0.00 0.00 0.00 1.73
3476 6446 4.335272 GAGTAGCAGCGTTCAAAAATAGC 58.665 43.478 0.00 0.00 0.00 2.97
3525 6495 1.203994 GTGGCGAGCCTTACAACTCTA 59.796 52.381 15.75 0.00 36.94 2.43
3568 6540 8.707938 AAAAAGAGATTGCTATTTATTGCCAC 57.292 30.769 0.00 0.00 34.66 5.01
3570 6542 6.630444 AGAGATTGCTATTTATTGCCACAG 57.370 37.500 0.00 0.00 0.00 3.66
3593 6566 2.687425 TGGTTCAACATAATGCCATCGG 59.313 45.455 0.00 0.00 0.00 4.18
3776 6757 0.600557 TGATTTTCGGCGTTGGCATT 59.399 45.000 6.85 0.00 42.47 3.56
3807 6798 4.645136 TGTTGATGTCTTCTAGCGGTAGAT 59.355 41.667 23.87 9.66 35.12 1.98
3952 7021 4.937620 TGCTACAATGCAAACTAGAGAAGG 59.062 41.667 0.00 0.00 40.29 3.46
3953 7022 5.178797 GCTACAATGCAAACTAGAGAAGGA 58.821 41.667 0.00 0.00 0.00 3.36
3954 7023 5.819901 GCTACAATGCAAACTAGAGAAGGAT 59.180 40.000 0.00 0.00 0.00 3.24
3968 7039 5.803552 AGAGAAGGATGAGAGGAACAAAAG 58.196 41.667 0.00 0.00 0.00 2.27
3989 7060 2.267642 GTGCGGCATGAGGGTACA 59.732 61.111 5.72 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.618418 CGTTGGATTGACATGATATGATGGC 60.618 44.000 7.11 3.93 0.00 4.40
1 2 5.702209 TCGTTGGATTGACATGATATGATGG 59.298 40.000 7.11 0.00 0.00 3.51
2 3 6.790285 TCGTTGGATTGACATGATATGATG 57.210 37.500 0.00 0.06 0.00 3.07
3 4 6.994496 AGTTCGTTGGATTGACATGATATGAT 59.006 34.615 0.00 0.00 0.00 2.45
4 5 6.348498 AGTTCGTTGGATTGACATGATATGA 58.652 36.000 0.00 0.00 0.00 2.15
5 6 6.609237 AGTTCGTTGGATTGACATGATATG 57.391 37.500 0.00 0.00 0.00 1.78
6 7 7.653713 GTCTAGTTCGTTGGATTGACATGATAT 59.346 37.037 0.00 0.00 0.00 1.63
7 8 6.978659 GTCTAGTTCGTTGGATTGACATGATA 59.021 38.462 0.00 0.00 0.00 2.15
8 9 5.812642 GTCTAGTTCGTTGGATTGACATGAT 59.187 40.000 0.00 0.00 0.00 2.45
9 10 5.047306 AGTCTAGTTCGTTGGATTGACATGA 60.047 40.000 0.00 0.00 0.00 3.07
10 11 5.062683 CAGTCTAGTTCGTTGGATTGACATG 59.937 44.000 0.00 0.00 0.00 3.21
11 12 5.171476 CAGTCTAGTTCGTTGGATTGACAT 58.829 41.667 0.00 0.00 0.00 3.06
12 13 4.556233 CAGTCTAGTTCGTTGGATTGACA 58.444 43.478 0.00 0.00 0.00 3.58
13 14 3.368236 GCAGTCTAGTTCGTTGGATTGAC 59.632 47.826 0.00 0.00 0.00 3.18
14 15 3.258372 AGCAGTCTAGTTCGTTGGATTGA 59.742 43.478 0.00 0.00 0.00 2.57
15 16 3.589988 AGCAGTCTAGTTCGTTGGATTG 58.410 45.455 0.00 0.00 0.00 2.67
16 17 3.963428 AGCAGTCTAGTTCGTTGGATT 57.037 42.857 0.00 0.00 0.00 3.01
17 18 3.258372 TGAAGCAGTCTAGTTCGTTGGAT 59.742 43.478 0.00 0.00 0.00 3.41
18 19 2.626266 TGAAGCAGTCTAGTTCGTTGGA 59.374 45.455 0.00 0.00 0.00 3.53
19 20 3.026630 TGAAGCAGTCTAGTTCGTTGG 57.973 47.619 0.00 0.00 0.00 3.77
20 21 4.449068 ACATTGAAGCAGTCTAGTTCGTTG 59.551 41.667 0.00 0.00 0.00 4.10
21 22 4.632153 ACATTGAAGCAGTCTAGTTCGTT 58.368 39.130 0.00 0.00 0.00 3.85
22 23 4.238514 GACATTGAAGCAGTCTAGTTCGT 58.761 43.478 0.00 0.00 0.00 3.85
23 24 3.301906 CGACATTGAAGCAGTCTAGTTCG 59.698 47.826 0.00 0.00 0.00 3.95
24 25 4.486090 TCGACATTGAAGCAGTCTAGTTC 58.514 43.478 0.00 0.00 0.00 3.01
25 26 4.489810 CTCGACATTGAAGCAGTCTAGTT 58.510 43.478 0.00 0.00 0.00 2.24
26 27 3.674682 GCTCGACATTGAAGCAGTCTAGT 60.675 47.826 0.00 0.00 30.43 2.57
27 28 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
28 29 2.732282 CGCTCGACATTGAAGCAGTCTA 60.732 50.000 9.76 0.00 0.00 2.59
29 30 1.719600 GCTCGACATTGAAGCAGTCT 58.280 50.000 0.00 0.00 0.00 3.24
30 31 0.368227 CGCTCGACATTGAAGCAGTC 59.632 55.000 9.76 0.00 0.00 3.51
31 32 1.630244 GCGCTCGACATTGAAGCAGT 61.630 55.000 0.00 0.00 0.00 4.40
32 33 1.059994 GCGCTCGACATTGAAGCAG 59.940 57.895 0.00 5.34 0.00 4.24
33 34 1.354337 GAGCGCTCGACATTGAAGCA 61.354 55.000 23.61 0.00 0.00 3.91
34 35 1.346538 GAGCGCTCGACATTGAAGC 59.653 57.895 23.61 0.00 0.00 3.86
35 36 1.070821 TTGAGCGCTCGACATTGAAG 58.929 50.000 30.75 0.00 0.00 3.02
36 37 0.790207 GTTGAGCGCTCGACATTGAA 59.210 50.000 40.41 22.88 42.27 2.69
37 38 0.319469 TGTTGAGCGCTCGACATTGA 60.319 50.000 42.95 27.81 46.09 2.57
38 39 2.153039 TGTTGAGCGCTCGACATTG 58.847 52.632 42.95 0.00 46.09 2.82
39 40 4.673403 TGTTGAGCGCTCGACATT 57.327 50.000 42.95 9.77 46.09 2.71
42 43 0.512952 AAATGTGTTGAGCGCTCGAC 59.487 50.000 39.44 39.44 42.86 4.20
43 44 2.073117 TAAATGTGTTGAGCGCTCGA 57.927 45.000 30.75 27.40 0.00 4.04
44 45 2.495939 GTTAAATGTGTTGAGCGCTCG 58.504 47.619 30.75 0.00 0.00 5.03
45 46 2.096417 ACGTTAAATGTGTTGAGCGCTC 60.096 45.455 30.42 30.42 0.00 5.03
46 47 1.871039 ACGTTAAATGTGTTGAGCGCT 59.129 42.857 11.27 11.27 0.00 5.92
47 48 1.969256 CACGTTAAATGTGTTGAGCGC 59.031 47.619 0.00 0.00 30.72 5.92
48 49 1.969256 GCACGTTAAATGTGTTGAGCG 59.031 47.619 9.95 0.00 37.43 5.03
49 50 2.973224 CTGCACGTTAAATGTGTTGAGC 59.027 45.455 9.95 0.00 37.43 4.26
50 51 4.209452 ACTGCACGTTAAATGTGTTGAG 57.791 40.909 9.95 6.98 37.43 3.02
51 52 4.624336 AACTGCACGTTAAATGTGTTGA 57.376 36.364 9.95 0.00 37.43 3.18
61 62 4.216472 TGGCATGAAATTAACTGCACGTTA 59.784 37.500 0.00 5.10 37.05 3.18
62 63 3.005261 TGGCATGAAATTAACTGCACGTT 59.995 39.130 0.00 6.74 39.64 3.99
63 64 2.556189 TGGCATGAAATTAACTGCACGT 59.444 40.909 0.00 0.00 36.34 4.49
64 65 3.214697 TGGCATGAAATTAACTGCACG 57.785 42.857 0.00 0.00 36.34 5.34
65 66 7.775397 ATATTTGGCATGAAATTAACTGCAC 57.225 32.000 0.00 0.53 36.34 4.57
66 67 8.694540 ACTATATTTGGCATGAAATTAACTGCA 58.305 29.630 0.00 0.00 36.34 4.41
67 68 8.971321 CACTATATTTGGCATGAAATTAACTGC 58.029 33.333 0.00 0.00 0.00 4.40
148 149 9.480053 GCAATGCATGTTAATTTGGAAGTATAT 57.520 29.630 0.00 0.00 0.00 0.86
149 150 8.473219 TGCAATGCATGTTAATTTGGAAGTATA 58.527 29.630 2.72 0.00 31.71 1.47
150 151 7.278424 GTGCAATGCATGTTAATTTGGAAGTAT 59.722 33.333 12.38 0.00 41.91 2.12
151 152 6.589523 GTGCAATGCATGTTAATTTGGAAGTA 59.410 34.615 12.38 0.00 41.91 2.24
152 153 5.409214 GTGCAATGCATGTTAATTTGGAAGT 59.591 36.000 12.38 0.00 41.91 3.01
153 154 5.444877 CGTGCAATGCATGTTAATTTGGAAG 60.445 40.000 18.55 0.00 41.91 3.46
154 155 4.388165 CGTGCAATGCATGTTAATTTGGAA 59.612 37.500 18.55 0.00 41.91 3.53
155 156 3.925299 CGTGCAATGCATGTTAATTTGGA 59.075 39.130 18.55 0.00 41.91 3.53
156 157 4.247794 CGTGCAATGCATGTTAATTTGG 57.752 40.909 18.55 0.00 41.91 3.28
166 167 2.551887 TCAAAGTGTACGTGCAATGCAT 59.448 40.909 12.38 0.00 41.91 3.96
167 168 1.943340 TCAAAGTGTACGTGCAATGCA 59.057 42.857 8.25 2.72 35.60 3.96
168 169 2.032030 AGTCAAAGTGTACGTGCAATGC 60.032 45.455 8.25 0.00 0.00 3.56
169 170 3.878086 AGTCAAAGTGTACGTGCAATG 57.122 42.857 8.25 8.35 0.00 2.82
170 171 4.628074 ACTAGTCAAAGTGTACGTGCAAT 58.372 39.130 8.25 3.76 0.00 3.56
171 172 4.049546 ACTAGTCAAAGTGTACGTGCAA 57.950 40.909 8.25 0.00 0.00 4.08
172 173 3.720949 ACTAGTCAAAGTGTACGTGCA 57.279 42.857 0.82 0.82 0.00 4.57
173 174 7.217825 GTCTAATACTAGTCAAAGTGTACGTGC 59.782 40.741 0.00 0.00 0.00 5.34
174 175 8.449397 AGTCTAATACTAGTCAAAGTGTACGTG 58.551 37.037 0.00 0.00 36.36 4.49
175 176 8.558973 AGTCTAATACTAGTCAAAGTGTACGT 57.441 34.615 0.00 0.00 36.36 3.57
189 190 7.837689 TCAAACTCTTGCCCTAGTCTAATACTA 59.162 37.037 0.00 0.00 34.60 1.82
190 191 6.668283 TCAAACTCTTGCCCTAGTCTAATACT 59.332 38.462 0.00 0.00 35.96 2.12
191 192 6.875076 TCAAACTCTTGCCCTAGTCTAATAC 58.125 40.000 0.00 0.00 32.14 1.89
227 230 4.283722 ACCGTTGGATAAAGAGAGAAGTGT 59.716 41.667 0.00 0.00 0.00 3.55
253 256 5.105023 TGAAGATCCATGACTCCTTTCTCTG 60.105 44.000 0.00 0.00 0.00 3.35
259 262 3.134442 GCTCTGAAGATCCATGACTCCTT 59.866 47.826 0.00 0.00 0.00 3.36
271 274 0.324738 TCCCGGTCAGCTCTGAAGAT 60.325 55.000 0.00 0.00 41.85 2.40
354 358 2.084546 GCACTCAGGTGGGTCATTTAC 58.915 52.381 0.00 0.00 43.18 2.01
355 359 1.004277 GGCACTCAGGTGGGTCATTTA 59.996 52.381 0.00 0.00 43.18 1.40
366 370 1.134580 CCATAGACAGTGGCACTCAGG 60.135 57.143 19.13 9.68 0.00 3.86
383 387 6.773976 AATTCGGACATGATTGTAAACCAT 57.226 33.333 0.00 0.00 35.79 3.55
396 400 5.373812 AACCTATCCTGAAATTCGGACAT 57.626 39.130 2.89 0.00 30.90 3.06
427 431 5.835257 ACAACAATGGAGTCAACAAATCTG 58.165 37.500 0.00 0.00 0.00 2.90
440 445 4.968259 AGCAGTACAGTAACAACAATGGA 58.032 39.130 0.00 0.00 0.00 3.41
453 3089 1.271379 TGTTGGACCGTAGCAGTACAG 59.729 52.381 0.00 0.00 27.45 2.74
481 3117 1.445518 AAAAAGCGGTTGGCCAAGG 59.554 52.632 21.21 15.36 45.17 3.61
525 3161 2.030805 GCAAGGCTTGAGTAACACAAGG 60.031 50.000 30.45 0.00 43.12 3.61
624 3263 3.000041 TCATTGTTCGACACCTGCATAC 59.000 45.455 0.00 0.00 0.00 2.39
675 3314 8.394971 TGATGTTCAGGGTTAATATATTGCAG 57.605 34.615 8.28 0.00 0.00 4.41
692 3332 7.160726 TCAGATCATGTTGTTACTGATGTTCA 58.839 34.615 0.00 0.00 30.00 3.18
698 3338 8.450578 AACTTTTCAGATCATGTTGTTACTGA 57.549 30.769 0.00 0.00 33.53 3.41
707 3347 4.637534 CGGGATGAACTTTTCAGATCATGT 59.362 41.667 0.00 0.00 41.41 3.21
708 3348 4.637534 ACGGGATGAACTTTTCAGATCATG 59.362 41.667 0.00 0.00 41.41 3.07
709 3349 4.848357 ACGGGATGAACTTTTCAGATCAT 58.152 39.130 0.00 0.00 43.42 2.45
710 3350 4.253685 GACGGGATGAACTTTTCAGATCA 58.746 43.478 0.00 0.00 43.98 2.92
731 3371 0.461548 CTCTATGTTCAGCAGCCGGA 59.538 55.000 5.05 0.00 0.00 5.14
736 3376 4.629200 GGAACTGTTCTCTATGTTCAGCAG 59.371 45.833 19.05 0.00 40.12 4.24
748 3388 2.834549 TCAGGGAGATGGAACTGTTCTC 59.165 50.000 19.05 10.47 36.08 2.87
750 3390 3.703001 TTCAGGGAGATGGAACTGTTC 57.297 47.619 12.05 12.05 32.92 3.18
758 3398 6.003950 TGTTAACTTCTTTTCAGGGAGATGG 58.996 40.000 7.22 0.00 0.00 3.51
760 3400 7.518188 TCTTGTTAACTTCTTTTCAGGGAGAT 58.482 34.615 7.22 0.00 0.00 2.75
790 3430 7.665559 AGTCAGTCAATTAGCACTGGATTTTTA 59.334 33.333 10.11 0.00 40.49 1.52
800 3440 5.625251 CACAATCAGTCAGTCAATTAGCAC 58.375 41.667 0.00 0.00 0.00 4.40
823 3463 1.177256 GGGGGACATGATGCAGATGC 61.177 60.000 0.00 0.00 42.50 3.91
863 3508 3.505386 AGAAGGAAGAGAAGCAGTGAGA 58.495 45.455 0.00 0.00 0.00 3.27
867 3512 2.835156 GGGTAGAAGGAAGAGAAGCAGT 59.165 50.000 0.00 0.00 0.00 4.40
870 3515 3.867857 CAAGGGTAGAAGGAAGAGAAGC 58.132 50.000 0.00 0.00 0.00 3.86
871 3516 3.261897 TGCAAGGGTAGAAGGAAGAGAAG 59.738 47.826 0.00 0.00 0.00 2.85
872 3517 3.008049 GTGCAAGGGTAGAAGGAAGAGAA 59.992 47.826 0.00 0.00 0.00 2.87
873 3518 2.567615 GTGCAAGGGTAGAAGGAAGAGA 59.432 50.000 0.00 0.00 0.00 3.10
874 3519 2.303022 TGTGCAAGGGTAGAAGGAAGAG 59.697 50.000 0.00 0.00 0.00 2.85
875 3520 2.334977 TGTGCAAGGGTAGAAGGAAGA 58.665 47.619 0.00 0.00 0.00 2.87
876 3521 2.859165 TGTGCAAGGGTAGAAGGAAG 57.141 50.000 0.00 0.00 0.00 3.46
877 3522 2.814097 GCTTGTGCAAGGGTAGAAGGAA 60.814 50.000 13.07 0.00 38.80 3.36
878 3523 1.271379 GCTTGTGCAAGGGTAGAAGGA 60.271 52.381 13.07 0.00 38.80 3.36
879 3524 1.168714 GCTTGTGCAAGGGTAGAAGG 58.831 55.000 13.07 0.00 38.80 3.46
880 3525 0.798776 CGCTTGTGCAAGGGTAGAAG 59.201 55.000 17.37 0.00 43.69 2.85
881 3526 2.927004 CGCTTGTGCAAGGGTAGAA 58.073 52.632 17.37 0.00 43.69 2.10
882 3527 4.693532 CGCTTGTGCAAGGGTAGA 57.306 55.556 17.37 0.00 43.69 2.59
891 3536 1.006079 GTTTGTTTCTTGCGCTTGTGC 60.006 47.619 9.73 0.00 0.00 4.57
892 3537 1.587946 GGTTTGTTTCTTGCGCTTGTG 59.412 47.619 9.73 0.00 0.00 3.33
897 3542 2.267426 AGTTTGGTTTGTTTCTTGCGC 58.733 42.857 0.00 0.00 0.00 6.09
899 3544 4.749976 TGGTAGTTTGGTTTGTTTCTTGC 58.250 39.130 0.00 0.00 0.00 4.01
908 3553 3.637769 TCTTGCCTTGGTAGTTTGGTTT 58.362 40.909 0.00 0.00 0.00 3.27
909 3554 3.306472 TCTTGCCTTGGTAGTTTGGTT 57.694 42.857 0.00 0.00 0.00 3.67
949 3908 1.301423 TGCACGTTTCTGGTGGTTAC 58.699 50.000 0.00 0.00 35.94 2.50
978 3937 2.154462 GCTTTGGACTTGCTCTTGCTA 58.846 47.619 0.00 0.00 40.48 3.49
1027 3986 2.124693 CGTCCTCCTCCTCCTGCTC 61.125 68.421 0.00 0.00 0.00 4.26
1030 3989 2.115911 CGTCGTCCTCCTCCTCCTG 61.116 68.421 0.00 0.00 0.00 3.86
1044 4003 4.493747 GGGTCTTCGGCCTCGTCG 62.494 72.222 0.00 0.00 37.69 5.12
1045 4004 4.144703 GGGGTCTTCGGCCTCGTC 62.145 72.222 0.00 0.00 37.69 4.20
1137 4102 2.124942 GGCAGCTCCCGGAAGAAG 60.125 66.667 0.73 0.00 0.00 2.85
1329 4294 3.746409 GACGTGGGCGGCGTAGTAG 62.746 68.421 9.37 0.13 43.04 2.57
1348 4313 1.742768 GGATGGTGTAGGAGCCGAG 59.257 63.158 0.00 0.00 0.00 4.63
1666 4631 4.862092 CTCGGCTGCGTCGATGCT 62.862 66.667 28.53 0.00 39.46 3.79
1797 4762 1.633852 GGCACAGCTCGCTCAAGAAG 61.634 60.000 4.72 0.00 0.00 2.85
1980 4945 0.107945 GGAGGAGCAAGCAGTCGATT 60.108 55.000 0.00 0.00 0.00 3.34
1990 4955 2.046864 CGTCGAGGAGGAGGAGCAA 61.047 63.158 0.00 0.00 0.00 3.91
2012 4977 4.383602 CGGCGTGCCAAGTTTCGG 62.384 66.667 12.06 0.00 35.37 4.30
2173 5138 0.179018 ACTGCTTCCTTTGCTTCCGT 60.179 50.000 0.00 0.00 0.00 4.69
2229 5194 1.065854 CGAGACATTGCCTCTTCCCTT 60.066 52.381 0.00 0.00 0.00 3.95
2238 5203 2.577059 TCGTCCCGAGACATTGCC 59.423 61.111 0.00 0.00 43.73 4.52
2306 5271 4.465512 CGCCGTGCCAGAACATGC 62.466 66.667 0.00 0.00 0.00 4.06
2680 5645 3.234353 TCATCTGCTTACCGATCATCCT 58.766 45.455 0.00 0.00 0.00 3.24
2701 5666 4.070552 GAAGAGCCCCGTCACGCT 62.071 66.667 0.00 0.00 38.27 5.07
2764 5729 2.693069 CATGGGATCATCGCTTCCTAC 58.307 52.381 3.00 0.00 32.34 3.18
2780 5745 4.246206 CGCTGCATCGTGGCATGG 62.246 66.667 6.90 0.00 43.97 3.66
2852 5817 0.537188 TTCCTCCTCGCTTCCATCAC 59.463 55.000 0.00 0.00 0.00 3.06
2908 5873 5.240891 AGTAAGTACGTGACACACTAGCTA 58.759 41.667 6.37 0.00 31.34 3.32
2909 5874 4.070716 AGTAAGTACGTGACACACTAGCT 58.929 43.478 6.37 0.00 31.34 3.32
2910 5875 4.416505 AGTAAGTACGTGACACACTAGC 57.583 45.455 6.37 0.13 31.34 3.42
2911 5876 6.517714 CGTAAAGTAAGTACGTGACACACTAG 59.482 42.308 6.37 0.00 39.54 2.57
2965 5930 6.751514 TCATTGTGTGTATACCAATCAACC 57.248 37.500 0.00 0.00 30.40 3.77
2979 5944 8.456471 AGTTGACAAGATTATGATCATTGTGTG 58.544 33.333 14.65 8.71 35.60 3.82
3096 6065 3.826729 TGGATCGACGACCATGAGATAAT 59.173 43.478 13.06 0.00 0.00 1.28
3107 6076 3.357166 AGCTTAGAATGGATCGACGAC 57.643 47.619 0.00 0.00 0.00 4.34
3139 6108 2.292267 AGCCAGCTAATGACCGAAATG 58.708 47.619 0.00 0.00 0.00 2.32
3169 6139 1.129437 GCGAATTCAGCAACCACTCTC 59.871 52.381 14.59 0.00 34.19 3.20
3187 6157 7.010460 TGACTCTTCACATCAAAATATACAGCG 59.990 37.037 0.00 0.00 0.00 5.18
3220 6190 3.621268 TCACGTACATAGAATGCAAAGGC 59.379 43.478 0.00 0.00 41.68 4.35
3234 6204 6.072119 AGTCATGTAGAAGTTGATCACGTACA 60.072 38.462 0.00 0.00 0.00 2.90
3306 6276 9.950680 GTGGAAGTAACCATTGAACATATATTG 57.049 33.333 0.00 0.00 42.17 1.90
3354 6324 1.755380 AGTATTTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3355 6325 1.856629 AGTATTTCCGAACGGAGGGA 58.143 50.000 15.34 7.17 46.06 4.20
3356 6326 2.277084 CAAGTATTTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3357 6327 2.928116 GACAAGTATTTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3358 6328 2.928116 GGACAAGTATTTCCGAACGGAG 59.072 50.000 15.34 5.60 46.06 4.63
3359 6329 2.564062 AGGACAAGTATTTCCGAACGGA 59.436 45.455 12.04 12.04 43.52 4.69
3360 6330 2.968675 AGGACAAGTATTTCCGAACGG 58.031 47.619 6.94 6.94 36.95 4.44
3361 6331 4.990257 TCTAGGACAAGTATTTCCGAACG 58.010 43.478 0.00 0.00 36.95 3.95
3362 6332 7.201617 CCATTTCTAGGACAAGTATTTCCGAAC 60.202 40.741 0.00 0.00 36.95 3.95
3363 6333 6.821665 CCATTTCTAGGACAAGTATTTCCGAA 59.178 38.462 0.00 0.00 36.95 4.30
3364 6334 6.070424 ACCATTTCTAGGACAAGTATTTCCGA 60.070 38.462 0.00 0.00 36.95 4.55
3365 6335 6.113411 ACCATTTCTAGGACAAGTATTTCCG 58.887 40.000 0.00 0.00 36.95 4.30
3366 6336 7.393515 ACAACCATTTCTAGGACAAGTATTTCC 59.606 37.037 0.00 0.00 0.00 3.13
3367 6337 8.336801 ACAACCATTTCTAGGACAAGTATTTC 57.663 34.615 0.00 0.00 0.00 2.17
3368 6338 9.975218 ATACAACCATTTCTAGGACAAGTATTT 57.025 29.630 0.00 0.00 0.00 1.40
3369 6339 9.614792 GATACAACCATTTCTAGGACAAGTATT 57.385 33.333 0.00 0.00 0.00 1.89
3370 6340 8.993424 AGATACAACCATTTCTAGGACAAGTAT 58.007 33.333 0.00 0.00 0.00 2.12
3371 6341 8.375493 AGATACAACCATTTCTAGGACAAGTA 57.625 34.615 0.00 0.00 0.00 2.24
3372 6342 7.259088 AGATACAACCATTTCTAGGACAAGT 57.741 36.000 0.00 0.00 0.00 3.16
3373 6343 8.696374 TCTAGATACAACCATTTCTAGGACAAG 58.304 37.037 6.10 0.00 38.67 3.16
3374 6344 8.475639 GTCTAGATACAACCATTTCTAGGACAA 58.524 37.037 0.00 0.00 38.67 3.18
3375 6345 7.839705 AGTCTAGATACAACCATTTCTAGGACA 59.160 37.037 0.00 0.00 38.67 4.02
3376 6346 8.240267 AGTCTAGATACAACCATTTCTAGGAC 57.760 38.462 0.00 0.00 38.67 3.85
3377 6347 8.696374 CAAGTCTAGATACAACCATTTCTAGGA 58.304 37.037 0.00 0.00 38.67 2.94
3378 6348 8.478877 ACAAGTCTAGATACAACCATTTCTAGG 58.521 37.037 0.00 0.00 38.67 3.02
3379 6349 9.877178 AACAAGTCTAGATACAACCATTTCTAG 57.123 33.333 0.00 0.00 39.23 2.43
3381 6351 9.574516 AAAACAAGTCTAGATACAACCATTTCT 57.425 29.630 0.00 0.00 0.00 2.52
3386 6356 9.485206 GAACTAAAACAAGTCTAGATACAACCA 57.515 33.333 0.00 0.00 0.00 3.67
3387 6357 9.708092 AGAACTAAAACAAGTCTAGATACAACC 57.292 33.333 0.00 0.00 0.00 3.77
3397 6367 9.708092 GGTTGTATCTAGAACTAAAACAAGTCT 57.292 33.333 0.00 0.00 30.96 3.24
3398 6368 9.485206 TGGTTGTATCTAGAACTAAAACAAGTC 57.515 33.333 0.00 0.00 30.96 3.01
3409 6379 9.871238 TGTCTTAGAAATGGTTGTATCTAGAAC 57.129 33.333 0.00 0.00 0.00 3.01
3412 6382 9.877178 ACTTGTCTTAGAAATGGTTGTATCTAG 57.123 33.333 0.00 0.00 0.00 2.43
3418 6388 8.793592 GGAAATACTTGTCTTAGAAATGGTTGT 58.206 33.333 0.00 0.00 0.00 3.32
3419 6389 7.962918 CGGAAATACTTGTCTTAGAAATGGTTG 59.037 37.037 0.00 0.00 0.00 3.77
3420 6390 7.881232 TCGGAAATACTTGTCTTAGAAATGGTT 59.119 33.333 0.00 0.00 0.00 3.67
3421 6391 7.391620 TCGGAAATACTTGTCTTAGAAATGGT 58.608 34.615 0.00 0.00 0.00 3.55
3422 6392 7.843490 TCGGAAATACTTGTCTTAGAAATGG 57.157 36.000 0.00 0.00 0.00 3.16
3423 6393 9.708222 CATTCGGAAATACTTGTCTTAGAAATG 57.292 33.333 0.00 0.00 0.00 2.32
3424 6394 8.893727 CCATTCGGAAATACTTGTCTTAGAAAT 58.106 33.333 0.00 0.00 0.00 2.17
3425 6395 8.098286 TCCATTCGGAAATACTTGTCTTAGAAA 58.902 33.333 0.00 0.00 38.83 2.52
3426 6396 7.617225 TCCATTCGGAAATACTTGTCTTAGAA 58.383 34.615 0.00 0.00 38.83 2.10
3427 6397 7.177832 TCCATTCGGAAATACTTGTCTTAGA 57.822 36.000 0.00 0.00 38.83 2.10
3428 6398 6.480320 CCTCCATTCGGAAATACTTGTCTTAG 59.520 42.308 0.00 0.00 42.21 2.18
3429 6399 6.346096 CCTCCATTCGGAAATACTTGTCTTA 58.654 40.000 0.00 0.00 42.21 2.10
3430 6400 5.186198 CCTCCATTCGGAAATACTTGTCTT 58.814 41.667 0.00 0.00 42.21 3.01
3431 6401 4.384208 CCCTCCATTCGGAAATACTTGTCT 60.384 45.833 0.00 0.00 42.21 3.41
3432 6402 3.877508 CCCTCCATTCGGAAATACTTGTC 59.122 47.826 0.00 0.00 42.21 3.18
3433 6403 3.521937 TCCCTCCATTCGGAAATACTTGT 59.478 43.478 0.00 0.00 42.21 3.16
3434 6404 4.130118 CTCCCTCCATTCGGAAATACTTG 58.870 47.826 0.00 0.00 42.21 3.16
3435 6405 3.780850 ACTCCCTCCATTCGGAAATACTT 59.219 43.478 0.00 0.00 42.21 2.24
3436 6406 3.385115 ACTCCCTCCATTCGGAAATACT 58.615 45.455 0.00 0.00 42.21 2.12
3437 6407 3.840124 ACTCCCTCCATTCGGAAATAC 57.160 47.619 0.00 0.00 42.21 1.89
3438 6408 3.323979 GCTACTCCCTCCATTCGGAAATA 59.676 47.826 0.00 0.00 42.21 1.40
3439 6409 2.104963 GCTACTCCCTCCATTCGGAAAT 59.895 50.000 0.00 0.00 42.21 2.17
3440 6410 1.485066 GCTACTCCCTCCATTCGGAAA 59.515 52.381 0.00 0.00 42.21 3.13
3441 6411 1.120530 GCTACTCCCTCCATTCGGAA 58.879 55.000 0.00 0.00 42.21 4.30
3442 6412 0.032515 TGCTACTCCCTCCATTCGGA 60.033 55.000 0.00 0.00 39.79 4.55
3443 6413 0.390860 CTGCTACTCCCTCCATTCGG 59.609 60.000 0.00 0.00 0.00 4.30
3444 6414 0.249657 GCTGCTACTCCCTCCATTCG 60.250 60.000 0.00 0.00 0.00 3.34
3445 6415 0.249657 CGCTGCTACTCCCTCCATTC 60.250 60.000 0.00 0.00 0.00 2.67
3446 6416 0.978146 ACGCTGCTACTCCCTCCATT 60.978 55.000 0.00 0.00 0.00 3.16
3447 6417 0.978146 AACGCTGCTACTCCCTCCAT 60.978 55.000 0.00 0.00 0.00 3.41
3448 6418 1.605058 GAACGCTGCTACTCCCTCCA 61.605 60.000 0.00 0.00 0.00 3.86
3449 6419 1.142097 GAACGCTGCTACTCCCTCC 59.858 63.158 0.00 0.00 0.00 4.30
3450 6420 0.246635 TTGAACGCTGCTACTCCCTC 59.753 55.000 0.00 0.00 0.00 4.30
3451 6421 0.685097 TTTGAACGCTGCTACTCCCT 59.315 50.000 0.00 0.00 0.00 4.20
3452 6422 1.519408 TTTTGAACGCTGCTACTCCC 58.481 50.000 0.00 0.00 0.00 4.30
3453 6423 3.831715 ATTTTTGAACGCTGCTACTCC 57.168 42.857 0.00 0.00 0.00 3.85
3454 6424 4.335272 GCTATTTTTGAACGCTGCTACTC 58.665 43.478 0.00 0.00 0.00 2.59
3455 6425 3.127030 GGCTATTTTTGAACGCTGCTACT 59.873 43.478 0.00 0.00 0.00 2.57
3456 6426 3.127030 AGGCTATTTTTGAACGCTGCTAC 59.873 43.478 0.00 0.00 0.00 3.58
3457 6427 3.343617 AGGCTATTTTTGAACGCTGCTA 58.656 40.909 0.00 0.00 0.00 3.49
3458 6428 2.162681 AGGCTATTTTTGAACGCTGCT 58.837 42.857 0.00 0.00 0.00 4.24
3459 6429 2.636768 AGGCTATTTTTGAACGCTGC 57.363 45.000 0.00 0.00 0.00 5.25
3460 6430 4.298332 ACAAAGGCTATTTTTGAACGCTG 58.702 39.130 3.78 0.00 38.55 5.18
3461 6431 4.037446 TGACAAAGGCTATTTTTGAACGCT 59.963 37.500 3.78 0.00 38.55 5.07
3462 6432 4.295051 TGACAAAGGCTATTTTTGAACGC 58.705 39.130 3.78 0.00 38.55 4.84
3463 6433 5.572896 GGATGACAAAGGCTATTTTTGAACG 59.427 40.000 3.78 0.00 38.55 3.95
3475 6445 2.223665 GCATGCTTAGGATGACAAAGGC 60.224 50.000 17.76 0.00 0.00 4.35
3476 6446 2.032550 CGCATGCTTAGGATGACAAAGG 59.967 50.000 17.76 0.00 0.00 3.11
3568 6540 4.987408 TGGCATTATGTTGAACCATCTG 57.013 40.909 0.00 0.00 0.00 2.90
3570 6542 4.539870 CGATGGCATTATGTTGAACCATC 58.460 43.478 14.63 14.63 46.51 3.51
3586 6559 5.678807 TATGAACTCTCATGGCCGATGGC 62.679 52.174 13.17 0.00 44.30 4.40
3593 6566 4.077300 TGGTGATATGAACTCTCATGGC 57.923 45.455 0.00 0.00 42.48 4.40
3703 6684 2.202932 CGAGATGAAGGCCCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
3776 6757 5.122869 GCTAGAAGACATCAACAATGAAGCA 59.877 40.000 0.00 0.00 39.49 3.91
3887 6938 9.388506 ACATGTTAGATATATTTAGCCATGCTC 57.611 33.333 16.66 0.00 40.44 4.26
3889 6940 9.166173 TGACATGTTAGATATATTTAGCCATGC 57.834 33.333 16.66 12.76 0.00 4.06
3952 7021 1.740025 CCGCCTTTTGTTCCTCTCATC 59.260 52.381 0.00 0.00 0.00 2.92
3953 7022 1.073923 ACCGCCTTTTGTTCCTCTCAT 59.926 47.619 0.00 0.00 0.00 2.90
3954 7023 0.472471 ACCGCCTTTTGTTCCTCTCA 59.528 50.000 0.00 0.00 0.00 3.27
3989 7060 4.141251 ACCACAAGTAGTTCCCATGAAACT 60.141 41.667 15.08 15.08 30.79 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.