Multiple sequence alignment - TraesCS4A01G049500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G049500 chr4A 100.000 3807 0 0 1 3807 40281072 40284878 0.000000e+00 7031.0
1 TraesCS4A01G049500 chr4A 87.383 214 14 7 62 266 40267504 40267295 2.290000e-57 233.0
2 TraesCS4A01G049500 chr4B 95.469 1523 51 10 1793 3300 520241303 520239784 0.000000e+00 2414.0
3 TraesCS4A01G049500 chr4B 87.108 1117 81 29 594 1667 520242403 520241307 0.000000e+00 1206.0
4 TraesCS4A01G049500 chr4B 91.133 203 16 2 265 465 520269852 520269650 1.350000e-69 274.0
5 TraesCS4A01G049500 chr4B 98.039 51 1 0 477 527 520268103 520268053 5.240000e-14 89.8
6 TraesCS4A01G049500 chr4B 89.062 64 7 0 3744 3807 169599321 169599258 3.150000e-11 80.5
7 TraesCS4A01G049500 chr4D 96.097 1358 44 5 1796 3147 423946750 423945396 0.000000e+00 2206.0
8 TraesCS4A01G049500 chr4D 87.691 1178 91 18 522 1664 423947915 423946757 0.000000e+00 1323.0
9 TraesCS4A01G049500 chr4D 93.103 145 8 2 265 408 423948492 423948349 1.070000e-50 211.0
10 TraesCS4A01G049500 chr4D 97.015 67 2 0 3234 3300 423945266 423945200 3.110000e-21 113.0
11 TraesCS4A01G049500 chr4D 94.444 54 3 0 3143 3196 423945317 423945264 2.440000e-12 84.2
12 TraesCS4A01G049500 chr5D 92.075 530 27 9 3287 3807 518918457 518917934 0.000000e+00 732.0
13 TraesCS4A01G049500 chr5D 88.292 521 42 13 3298 3807 97990762 97991274 1.170000e-169 606.0
14 TraesCS4A01G049500 chr5B 90.944 519 33 7 3300 3807 506715007 506715522 0.000000e+00 686.0
15 TraesCS4A01G049500 chr5B 90.944 519 33 7 3300 3807 506748214 506748729 0.000000e+00 686.0
16 TraesCS4A01G049500 chr5B 88.889 531 36 13 3294 3807 489227839 489227315 1.930000e-177 632.0
17 TraesCS4A01G049500 chr5B 84.583 240 32 2 32 266 465523444 465523205 2.290000e-57 233.0
18 TraesCS4A01G049500 chr5B 82.540 252 33 6 20 264 465529729 465529976 1.070000e-50 211.0
19 TraesCS4A01G049500 chr2D 88.825 519 34 16 3294 3807 100187353 100187852 1.940000e-172 616.0
20 TraesCS4A01G049500 chr2D 86.179 246 28 3 24 264 612868258 612868014 1.050000e-65 261.0
21 TraesCS4A01G049500 chr2A 84.720 517 54 15 3300 3807 293933851 293934351 9.500000e-136 494.0
22 TraesCS4A01G049500 chr7A 83.523 528 53 24 3295 3801 341432663 341433177 2.680000e-126 462.0
23 TraesCS4A01G049500 chrUn 86.617 269 29 4 3 264 383600032 383600300 1.340000e-74 291.0
24 TraesCS4A01G049500 chrUn 85.821 268 31 4 3 264 458599142 458599408 1.040000e-70 278.0
25 TraesCS4A01G049500 chr3B 86.617 269 29 4 3 264 52604579 52604847 1.340000e-74 291.0
26 TraesCS4A01G049500 chr3B 88.360 189 20 1 3619 3807 777023738 777023552 3.830000e-55 226.0
27 TraesCS4A01G049500 chr3B 92.254 142 9 2 1664 1803 26537146 26537005 2.320000e-47 200.0
28 TraesCS4A01G049500 chr3B 92.754 138 10 0 1657 1794 422206614 422206477 2.320000e-47 200.0
29 TraesCS4A01G049500 chr6B 87.983 233 25 3 3 233 380554949 380554718 4.850000e-69 272.0
30 TraesCS4A01G049500 chr6B 93.478 138 8 1 1664 1801 612317132 612317268 1.790000e-48 204.0
31 TraesCS4A01G049500 chr7D 76.330 545 69 33 3296 3804 34137342 34136822 1.770000e-58 237.0
32 TraesCS4A01G049500 chr7D 93.431 137 7 2 1664 1799 150359427 150359292 6.450000e-48 202.0
33 TraesCS4A01G049500 chr3A 86.047 215 30 0 22 236 119656054 119656268 8.220000e-57 231.0
34 TraesCS4A01G049500 chr3A 92.806 139 8 2 1664 1801 52198856 52198993 2.320000e-47 200.0
35 TraesCS4A01G049500 chr5A 75.657 571 72 41 3293 3804 440753722 440753160 4.950000e-54 222.0
36 TraesCS4A01G049500 chr3D 92.806 139 10 0 1664 1802 3821254 3821116 6.450000e-48 202.0
37 TraesCS4A01G049500 chr3D 90.196 153 11 4 1650 1799 67437049 67437200 3.000000e-46 196.0
38 TraesCS4A01G049500 chr2B 93.382 136 9 0 1657 1792 620596671 620596806 6.450000e-48 202.0
39 TraesCS4A01G049500 chr1B 91.156 147 13 0 1657 1803 16435059 16435205 2.320000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G049500 chr4A 40281072 40284878 3806 False 7031.00 7031 100.0000 1 3807 1 chr4A.!!$F1 3806
1 TraesCS4A01G049500 chr4B 520239784 520242403 2619 True 1810.00 2414 91.2885 594 3300 2 chr4B.!!$R2 2706
2 TraesCS4A01G049500 chr4D 423945200 423948492 3292 True 787.44 2206 93.6700 265 3300 5 chr4D.!!$R1 3035
3 TraesCS4A01G049500 chr5D 518917934 518918457 523 True 732.00 732 92.0750 3287 3807 1 chr5D.!!$R1 520
4 TraesCS4A01G049500 chr5D 97990762 97991274 512 False 606.00 606 88.2920 3298 3807 1 chr5D.!!$F1 509
5 TraesCS4A01G049500 chr5B 506715007 506715522 515 False 686.00 686 90.9440 3300 3807 1 chr5B.!!$F2 507
6 TraesCS4A01G049500 chr5B 506748214 506748729 515 False 686.00 686 90.9440 3300 3807 1 chr5B.!!$F3 507
7 TraesCS4A01G049500 chr5B 489227315 489227839 524 True 632.00 632 88.8890 3294 3807 1 chr5B.!!$R2 513
8 TraesCS4A01G049500 chr2A 293933851 293934351 500 False 494.00 494 84.7200 3300 3807 1 chr2A.!!$F1 507
9 TraesCS4A01G049500 chr7A 341432663 341433177 514 False 462.00 462 83.5230 3295 3801 1 chr7A.!!$F1 506
10 TraesCS4A01G049500 chr7D 34136822 34137342 520 True 237.00 237 76.3300 3296 3804 1 chr7D.!!$R1 508
11 TraesCS4A01G049500 chr5A 440753160 440753722 562 True 222.00 222 75.6570 3293 3804 1 chr5A.!!$R1 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.034574 AAATATGACGTGCTGGCCCA 60.035 50.0 0.00 0.0 0.0 5.36 F
1358 1725 0.036105 GGGTTACCAATTCGTCCCGT 60.036 55.0 2.98 0.0 36.5 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 2165 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.0 0.00 0.0 0.0 4.79 R
3215 3744 0.036732 TCCCACTCATGAGTTGCCAC 59.963 55.0 25.84 0.0 40.2 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.337398 GTAGCGGCTCTCTTCTGTG 57.663 57.895 5.39 0.00 0.00 3.66
19 20 0.804156 GTAGCGGCTCTCTTCTGTGC 60.804 60.000 5.39 0.00 0.00 4.57
20 21 1.949847 TAGCGGCTCTCTTCTGTGCC 61.950 60.000 5.39 0.00 41.59 5.01
21 22 2.977178 CGGCTCTCTTCTGTGCCT 59.023 61.111 0.00 0.00 42.49 4.75
22 23 1.447489 CGGCTCTCTTCTGTGCCTG 60.447 63.158 0.00 0.00 42.49 4.85
23 24 1.676384 GGCTCTCTTCTGTGCCTGT 59.324 57.895 0.00 0.00 41.72 4.00
24 25 0.036022 GGCTCTCTTCTGTGCCTGTT 59.964 55.000 0.00 0.00 41.72 3.16
25 26 1.544314 GGCTCTCTTCTGTGCCTGTTT 60.544 52.381 0.00 0.00 41.72 2.83
26 27 1.803555 GCTCTCTTCTGTGCCTGTTTC 59.196 52.381 0.00 0.00 0.00 2.78
27 28 2.064762 CTCTCTTCTGTGCCTGTTTCG 58.935 52.381 0.00 0.00 0.00 3.46
28 29 0.514691 CTCTTCTGTGCCTGTTTCGC 59.485 55.000 0.00 0.00 0.00 4.70
29 30 0.106708 TCTTCTGTGCCTGTTTCGCT 59.893 50.000 0.00 0.00 0.00 4.93
30 31 0.514691 CTTCTGTGCCTGTTTCGCTC 59.485 55.000 0.00 0.00 0.00 5.03
31 32 1.221466 TTCTGTGCCTGTTTCGCTCG 61.221 55.000 0.00 0.00 0.00 5.03
32 33 3.300667 CTGTGCCTGTTTCGCTCGC 62.301 63.158 0.00 0.00 0.00 5.03
33 34 3.044305 GTGCCTGTTTCGCTCGCT 61.044 61.111 0.00 0.00 0.00 4.93
34 35 2.738521 TGCCTGTTTCGCTCGCTC 60.739 61.111 0.00 0.00 0.00 5.03
35 36 2.433318 GCCTGTTTCGCTCGCTCT 60.433 61.111 0.00 0.00 0.00 4.09
36 37 2.029844 GCCTGTTTCGCTCGCTCTT 61.030 57.895 0.00 0.00 0.00 2.85
37 38 1.960994 GCCTGTTTCGCTCGCTCTTC 61.961 60.000 0.00 0.00 0.00 2.87
38 39 1.355066 CCTGTTTCGCTCGCTCTTCC 61.355 60.000 0.00 0.00 0.00 3.46
39 40 0.667487 CTGTTTCGCTCGCTCTTCCA 60.667 55.000 0.00 0.00 0.00 3.53
40 41 0.249699 TGTTTCGCTCGCTCTTCCAA 60.250 50.000 0.00 0.00 0.00 3.53
41 42 0.440371 GTTTCGCTCGCTCTTCCAAG 59.560 55.000 0.00 0.00 0.00 3.61
42 43 0.317160 TTTCGCTCGCTCTTCCAAGA 59.683 50.000 0.00 0.00 0.00 3.02
43 44 0.317160 TTCGCTCGCTCTTCCAAGAA 59.683 50.000 0.00 0.00 34.03 2.52
44 45 0.388649 TCGCTCGCTCTTCCAAGAAC 60.389 55.000 0.00 0.00 34.03 3.01
45 46 1.678269 CGCTCGCTCTTCCAAGAACG 61.678 60.000 5.88 5.88 43.79 3.95
46 47 0.667792 GCTCGCTCTTCCAAGAACGT 60.668 55.000 10.93 0.00 43.15 3.99
47 48 1.784525 CTCGCTCTTCCAAGAACGTT 58.215 50.000 0.00 0.00 43.15 3.99
48 49 1.721926 CTCGCTCTTCCAAGAACGTTC 59.278 52.381 20.71 20.71 43.15 3.95
49 50 0.435008 CGCTCTTCCAAGAACGTTCG 59.565 55.000 21.87 9.27 39.17 3.95
50 51 0.790814 GCTCTTCCAAGAACGTTCGG 59.209 55.000 21.87 17.71 34.03 4.30
51 52 1.872653 GCTCTTCCAAGAACGTTCGGT 60.873 52.381 21.87 11.81 34.03 4.69
52 53 2.480845 CTCTTCCAAGAACGTTCGGTT 58.519 47.619 21.87 9.67 42.96 4.44
53 54 2.206750 TCTTCCAAGAACGTTCGGTTG 58.793 47.619 21.87 19.94 39.50 3.77
54 55 2.159071 TCTTCCAAGAACGTTCGGTTGA 60.159 45.455 24.18 17.60 39.50 3.18
55 56 2.312722 TCCAAGAACGTTCGGTTGAA 57.687 45.000 24.18 8.17 39.50 2.69
56 57 5.734200 TCTTCCAAGAACGTTCGGTTGAAC 61.734 45.833 24.18 2.13 40.55 3.18
65 66 1.790755 TTCGGTTGAACCAGTGATCG 58.209 50.000 15.58 0.00 38.47 3.69
66 67 0.963225 TCGGTTGAACCAGTGATCGA 59.037 50.000 15.58 0.74 38.47 3.59
67 68 1.067846 TCGGTTGAACCAGTGATCGAG 60.068 52.381 15.58 0.00 38.47 4.04
68 69 1.079503 GGTTGAACCAGTGATCGAGC 58.920 55.000 9.98 0.00 38.42 5.03
69 70 1.079503 GTTGAACCAGTGATCGAGCC 58.920 55.000 0.00 0.00 0.00 4.70
70 71 0.684535 TTGAACCAGTGATCGAGCCA 59.315 50.000 0.00 0.00 0.00 4.75
71 72 0.247460 TGAACCAGTGATCGAGCCAG 59.753 55.000 0.00 0.00 0.00 4.85
72 73 0.460987 GAACCAGTGATCGAGCCAGG 60.461 60.000 0.00 0.00 0.00 4.45
73 74 2.202987 CCAGTGATCGAGCCAGGC 60.203 66.667 1.84 1.84 0.00 4.85
74 75 2.580815 CAGTGATCGAGCCAGGCA 59.419 61.111 15.80 0.00 0.00 4.75
75 76 1.145598 CAGTGATCGAGCCAGGCAT 59.854 57.895 15.80 0.00 0.00 4.40
76 77 1.145598 AGTGATCGAGCCAGGCATG 59.854 57.895 15.80 5.26 0.00 4.06
77 78 1.153289 GTGATCGAGCCAGGCATGT 60.153 57.895 15.80 0.00 0.00 3.21
78 79 1.153309 TGATCGAGCCAGGCATGTG 60.153 57.895 15.80 0.00 0.00 3.21
79 80 1.144716 GATCGAGCCAGGCATGTGA 59.855 57.895 15.80 5.77 0.00 3.58
80 81 0.462581 GATCGAGCCAGGCATGTGAA 60.463 55.000 15.80 0.00 0.00 3.18
81 82 0.035152 ATCGAGCCAGGCATGTGAAA 60.035 50.000 15.80 0.00 0.00 2.69
82 83 0.955428 TCGAGCCAGGCATGTGAAAC 60.955 55.000 15.80 0.00 37.35 2.78
83 84 1.503542 GAGCCAGGCATGTGAAACG 59.496 57.895 15.80 0.00 42.39 3.60
84 85 0.955428 GAGCCAGGCATGTGAAACGA 60.955 55.000 15.80 0.00 42.39 3.85
85 86 1.210155 GCCAGGCATGTGAAACGAC 59.790 57.895 6.55 0.00 42.39 4.34
86 87 1.875963 CCAGGCATGTGAAACGACC 59.124 57.895 0.00 0.00 42.39 4.79
87 88 0.888736 CCAGGCATGTGAAACGACCA 60.889 55.000 0.00 0.00 42.39 4.02
88 89 0.518636 CAGGCATGTGAAACGACCAG 59.481 55.000 0.00 0.00 42.39 4.00
89 90 0.606401 AGGCATGTGAAACGACCAGG 60.606 55.000 0.00 0.00 42.39 4.45
90 91 1.586154 GGCATGTGAAACGACCAGGG 61.586 60.000 0.00 0.00 42.39 4.45
91 92 1.586154 GCATGTGAAACGACCAGGGG 61.586 60.000 0.00 0.00 42.39 4.79
92 93 1.303317 ATGTGAAACGACCAGGGGC 60.303 57.895 0.00 0.00 42.39 5.80
93 94 2.063015 ATGTGAAACGACCAGGGGCA 62.063 55.000 0.00 0.00 42.39 5.36
94 95 1.527380 GTGAAACGACCAGGGGCAA 60.527 57.895 0.00 0.00 0.00 4.52
95 96 1.104577 GTGAAACGACCAGGGGCAAA 61.105 55.000 0.00 0.00 0.00 3.68
96 97 0.395862 TGAAACGACCAGGGGCAAAA 60.396 50.000 0.00 0.00 0.00 2.44
97 98 0.966179 GAAACGACCAGGGGCAAAAT 59.034 50.000 0.00 0.00 0.00 1.82
98 99 0.966179 AAACGACCAGGGGCAAAATC 59.034 50.000 0.00 0.00 0.00 2.17
99 100 1.241315 AACGACCAGGGGCAAAATCG 61.241 55.000 0.00 0.00 35.74 3.34
100 101 1.674322 CGACCAGGGGCAAAATCGT 60.674 57.895 0.00 0.00 0.00 3.73
101 102 1.644786 CGACCAGGGGCAAAATCGTC 61.645 60.000 0.00 0.00 0.00 4.20
102 103 1.304134 ACCAGGGGCAAAATCGTCC 60.304 57.895 0.00 0.00 0.00 4.79
103 104 1.000896 CCAGGGGCAAAATCGTCCT 60.001 57.895 0.00 0.00 0.00 3.85
104 105 0.254747 CCAGGGGCAAAATCGTCCTA 59.745 55.000 0.00 0.00 0.00 2.94
105 106 1.379527 CAGGGGCAAAATCGTCCTAC 58.620 55.000 0.00 0.00 0.00 3.18
106 107 0.988832 AGGGGCAAAATCGTCCTACA 59.011 50.000 0.00 0.00 0.00 2.74
107 108 1.353022 AGGGGCAAAATCGTCCTACAA 59.647 47.619 0.00 0.00 0.00 2.41
108 109 2.164338 GGGGCAAAATCGTCCTACAAA 58.836 47.619 0.00 0.00 0.00 2.83
109 110 2.559231 GGGGCAAAATCGTCCTACAAAA 59.441 45.455 0.00 0.00 0.00 2.44
110 111 3.194755 GGGGCAAAATCGTCCTACAAAAT 59.805 43.478 0.00 0.00 0.00 1.82
111 112 4.399934 GGGGCAAAATCGTCCTACAAAATA 59.600 41.667 0.00 0.00 0.00 1.40
112 113 5.068591 GGGGCAAAATCGTCCTACAAAATAT 59.931 40.000 0.00 0.00 0.00 1.28
113 114 5.977129 GGGCAAAATCGTCCTACAAAATATG 59.023 40.000 0.00 0.00 0.00 1.78
114 115 6.183360 GGGCAAAATCGTCCTACAAAATATGA 60.183 38.462 0.00 0.00 0.00 2.15
115 116 6.691388 GGCAAAATCGTCCTACAAAATATGAC 59.309 38.462 0.00 0.00 0.00 3.06
117 118 7.461107 CAAAATCGTCCTACAAAATATGACGT 58.539 34.615 9.74 0.00 46.41 4.34
118 119 6.583912 AATCGTCCTACAAAATATGACGTG 57.416 37.500 9.74 0.00 46.41 4.49
119 120 3.861113 TCGTCCTACAAAATATGACGTGC 59.139 43.478 9.74 0.00 46.41 5.34
120 121 3.863424 CGTCCTACAAAATATGACGTGCT 59.137 43.478 0.00 0.00 42.68 4.40
121 122 4.259810 CGTCCTACAAAATATGACGTGCTG 60.260 45.833 0.00 0.00 42.68 4.41
122 123 4.034048 GTCCTACAAAATATGACGTGCTGG 59.966 45.833 0.00 0.00 0.00 4.85
123 124 2.919666 ACAAAATATGACGTGCTGGC 57.080 45.000 0.00 0.00 0.00 4.85
124 125 1.472480 ACAAAATATGACGTGCTGGCC 59.528 47.619 0.00 0.00 0.00 5.36
125 126 1.102978 AAAATATGACGTGCTGGCCC 58.897 50.000 0.00 0.00 0.00 5.80
126 127 0.034574 AAATATGACGTGCTGGCCCA 60.035 50.000 0.00 0.00 0.00 5.36
127 128 0.183492 AATATGACGTGCTGGCCCAT 59.817 50.000 0.00 0.00 0.00 4.00
128 129 1.055849 ATATGACGTGCTGGCCCATA 58.944 50.000 0.00 0.00 0.00 2.74
129 130 0.105964 TATGACGTGCTGGCCCATAC 59.894 55.000 0.00 0.00 0.00 2.39
130 131 2.513897 GACGTGCTGGCCCATACC 60.514 66.667 0.00 0.00 0.00 2.73
131 132 3.009115 ACGTGCTGGCCCATACCT 61.009 61.111 0.00 0.00 0.00 3.08
132 133 1.682451 GACGTGCTGGCCCATACCTA 61.682 60.000 0.00 0.00 0.00 3.08
133 134 1.069765 CGTGCTGGCCCATACCTAG 59.930 63.158 0.00 0.00 0.00 3.02
134 135 1.399744 CGTGCTGGCCCATACCTAGA 61.400 60.000 0.00 0.00 0.00 2.43
135 136 0.394565 GTGCTGGCCCATACCTAGAG 59.605 60.000 0.00 0.00 0.00 2.43
136 137 0.264657 TGCTGGCCCATACCTAGAGA 59.735 55.000 0.00 0.00 0.00 3.10
137 138 1.343985 TGCTGGCCCATACCTAGAGAA 60.344 52.381 0.00 0.00 0.00 2.87
138 139 1.346068 GCTGGCCCATACCTAGAGAAG 59.654 57.143 0.00 0.00 0.00 2.85
158 159 8.753133 AGAGAAGGAAAGAAAAACTTGATTTGT 58.247 29.630 0.00 0.00 38.98 2.83
159 160 8.707938 AGAAGGAAAGAAAAACTTGATTTGTG 57.292 30.769 0.00 0.00 38.98 3.33
160 161 8.314021 AGAAGGAAAGAAAAACTTGATTTGTGT 58.686 29.630 0.00 0.00 38.98 3.72
161 162 8.479313 AAGGAAAGAAAAACTTGATTTGTGTC 57.521 30.769 0.00 0.00 38.98 3.67
162 163 7.610865 AGGAAAGAAAAACTTGATTTGTGTCA 58.389 30.769 0.00 0.00 38.98 3.58
163 164 8.260114 AGGAAAGAAAAACTTGATTTGTGTCAT 58.740 29.630 0.00 0.00 38.98 3.06
164 165 8.882736 GGAAAGAAAAACTTGATTTGTGTCATT 58.117 29.630 0.00 0.00 38.98 2.57
171 172 9.829507 AAAACTTGATTTGTGTCATTTAATCCA 57.170 25.926 0.00 0.00 0.00 3.41
172 173 9.480053 AAACTTGATTTGTGTCATTTAATCCAG 57.520 29.630 0.00 0.00 0.00 3.86
173 174 7.092716 ACTTGATTTGTGTCATTTAATCCAGC 58.907 34.615 0.00 0.00 0.00 4.85
174 175 6.839124 TGATTTGTGTCATTTAATCCAGCT 57.161 33.333 0.00 0.00 0.00 4.24
175 176 6.623486 TGATTTGTGTCATTTAATCCAGCTG 58.377 36.000 6.78 6.78 0.00 4.24
176 177 6.209192 TGATTTGTGTCATTTAATCCAGCTGT 59.791 34.615 13.81 0.00 0.00 4.40
177 178 5.627499 TTGTGTCATTTAATCCAGCTGTC 57.373 39.130 13.81 0.00 0.00 3.51
178 179 4.650734 TGTGTCATTTAATCCAGCTGTCA 58.349 39.130 13.81 0.00 0.00 3.58
179 180 5.069318 TGTGTCATTTAATCCAGCTGTCAA 58.931 37.500 13.81 0.00 0.00 3.18
180 181 5.711506 TGTGTCATTTAATCCAGCTGTCAAT 59.288 36.000 13.81 0.03 0.00 2.57
181 182 6.127925 TGTGTCATTTAATCCAGCTGTCAATC 60.128 38.462 13.81 0.00 0.00 2.67
182 183 5.945191 TGTCATTTAATCCAGCTGTCAATCA 59.055 36.000 13.81 0.00 0.00 2.57
183 184 6.433716 TGTCATTTAATCCAGCTGTCAATCAA 59.566 34.615 13.81 0.00 0.00 2.57
184 185 7.039853 TGTCATTTAATCCAGCTGTCAATCAAA 60.040 33.333 13.81 5.55 0.00 2.69
185 186 7.977853 GTCATTTAATCCAGCTGTCAATCAAAT 59.022 33.333 13.81 7.54 0.00 2.32
186 187 8.192774 TCATTTAATCCAGCTGTCAATCAAATC 58.807 33.333 13.81 0.00 0.00 2.17
187 188 7.707624 TTTAATCCAGCTGTCAATCAAATCT 57.292 32.000 13.81 0.00 0.00 2.40
188 189 8.806429 TTTAATCCAGCTGTCAATCAAATCTA 57.194 30.769 13.81 0.00 0.00 1.98
189 190 8.985315 TTAATCCAGCTGTCAATCAAATCTAT 57.015 30.769 13.81 0.00 0.00 1.98
190 191 6.879276 ATCCAGCTGTCAATCAAATCTATG 57.121 37.500 13.81 0.00 0.00 2.23
191 192 5.748402 TCCAGCTGTCAATCAAATCTATGT 58.252 37.500 13.81 0.00 0.00 2.29
192 193 5.819379 TCCAGCTGTCAATCAAATCTATGTC 59.181 40.000 13.81 0.00 0.00 3.06
193 194 5.587443 CCAGCTGTCAATCAAATCTATGTCA 59.413 40.000 13.81 0.00 0.00 3.58
194 195 6.262496 CCAGCTGTCAATCAAATCTATGTCAT 59.738 38.462 13.81 0.00 0.00 3.06
195 196 7.353497 CAGCTGTCAATCAAATCTATGTCATC 58.647 38.462 5.25 0.00 0.00 2.92
196 197 7.226918 CAGCTGTCAATCAAATCTATGTCATCT 59.773 37.037 5.25 0.00 0.00 2.90
197 198 8.427276 AGCTGTCAATCAAATCTATGTCATCTA 58.573 33.333 0.00 0.00 0.00 1.98
198 199 9.049523 GCTGTCAATCAAATCTATGTCATCTAA 57.950 33.333 0.00 0.00 0.00 2.10
230 231 7.991084 AAAAGAAAGATGTGTCATGAGATCA 57.009 32.000 0.00 0.00 0.00 2.92
231 232 7.991084 AAAGAAAGATGTGTCATGAGATCAA 57.009 32.000 0.00 0.00 0.00 2.57
232 233 7.991084 AAGAAAGATGTGTCATGAGATCAAA 57.009 32.000 0.00 0.00 0.00 2.69
233 234 7.612668 AGAAAGATGTGTCATGAGATCAAAG 57.387 36.000 0.00 0.00 0.00 2.77
234 235 7.166851 AGAAAGATGTGTCATGAGATCAAAGT 58.833 34.615 0.00 0.00 0.00 2.66
235 236 6.981762 AAGATGTGTCATGAGATCAAAGTC 57.018 37.500 0.00 0.00 0.00 3.01
236 237 6.297080 AGATGTGTCATGAGATCAAAGTCT 57.703 37.500 0.00 0.00 0.00 3.24
237 238 6.339730 AGATGTGTCATGAGATCAAAGTCTC 58.660 40.000 0.00 0.00 43.90 3.36
246 247 5.755330 GAGATCAAAGTCTCAGAAACGTC 57.245 43.478 0.00 0.00 43.27 4.34
247 248 5.201713 AGATCAAAGTCTCAGAAACGTCA 57.798 39.130 0.00 0.00 0.00 4.35
248 249 5.788450 AGATCAAAGTCTCAGAAACGTCAT 58.212 37.500 0.00 0.00 0.00 3.06
249 250 6.925211 AGATCAAAGTCTCAGAAACGTCATA 58.075 36.000 0.00 0.00 0.00 2.15
250 251 7.551585 AGATCAAAGTCTCAGAAACGTCATAT 58.448 34.615 0.00 0.00 0.00 1.78
251 252 8.037758 AGATCAAAGTCTCAGAAACGTCATATT 58.962 33.333 0.00 0.00 0.00 1.28
252 253 9.302345 GATCAAAGTCTCAGAAACGTCATATTA 57.698 33.333 0.00 0.00 0.00 0.98
253 254 9.823647 ATCAAAGTCTCAGAAACGTCATATTAT 57.176 29.630 0.00 0.00 0.00 1.28
254 255 9.302345 TCAAAGTCTCAGAAACGTCATATTATC 57.698 33.333 0.00 0.00 0.00 1.75
255 256 8.543774 CAAAGTCTCAGAAACGTCATATTATCC 58.456 37.037 0.00 0.00 0.00 2.59
256 257 7.348080 AGTCTCAGAAACGTCATATTATCCA 57.652 36.000 0.00 0.00 0.00 3.41
257 258 7.957002 AGTCTCAGAAACGTCATATTATCCAT 58.043 34.615 0.00 0.00 0.00 3.41
258 259 8.424918 AGTCTCAGAAACGTCATATTATCCATT 58.575 33.333 0.00 0.00 0.00 3.16
259 260 9.046296 GTCTCAGAAACGTCATATTATCCATTT 57.954 33.333 0.00 0.00 0.00 2.32
260 261 9.045223 TCTCAGAAACGTCATATTATCCATTTG 57.955 33.333 0.00 0.00 0.00 2.32
261 262 7.639039 TCAGAAACGTCATATTATCCATTTGC 58.361 34.615 0.00 0.00 0.00 3.68
262 263 7.498900 TCAGAAACGTCATATTATCCATTTGCT 59.501 33.333 0.00 0.00 0.00 3.91
263 264 7.800380 CAGAAACGTCATATTATCCATTTGCTC 59.200 37.037 0.00 0.00 0.00 4.26
300 302 4.078516 GTAGGGGCTCGCCGTTGT 62.079 66.667 1.24 0.00 36.85 3.32
332 334 8.044309 TGAAACTCCATTCCTATGAATAAACGA 58.956 33.333 0.00 0.00 39.20 3.85
403 405 5.319453 TCGACTAACTTGGTTCTCTTAGGA 58.681 41.667 0.00 0.00 0.00 2.94
404 406 5.415077 TCGACTAACTTGGTTCTCTTAGGAG 59.585 44.000 0.00 0.00 40.73 3.69
405 407 5.408880 ACTAACTTGGTTCTCTTAGGAGC 57.591 43.478 0.00 0.00 39.31 4.70
406 408 4.838986 ACTAACTTGGTTCTCTTAGGAGCA 59.161 41.667 0.00 0.00 39.31 4.26
421 698 4.286297 AGGAGCACTACAAGCAAACATA 57.714 40.909 0.00 0.00 0.00 2.29
424 701 4.331168 GGAGCACTACAAGCAAACATAGAG 59.669 45.833 0.00 0.00 0.00 2.43
436 713 4.455877 GCAAACATAGAGTAACTGCCTTGT 59.544 41.667 0.00 0.00 0.00 3.16
459 736 6.547141 TGTCAATCCCATGAATAAAGTCCATC 59.453 38.462 0.00 0.00 0.00 3.51
461 738 6.547141 TCAATCCCATGAATAAAGTCCATCAC 59.453 38.462 0.00 0.00 0.00 3.06
467 744 4.323417 TGAATAAAGTCCATCACAGCGTT 58.677 39.130 0.00 0.00 0.00 4.84
468 745 4.154015 TGAATAAAGTCCATCACAGCGTTG 59.846 41.667 0.00 0.00 0.00 4.10
469 746 2.254546 AAAGTCCATCACAGCGTTGA 57.745 45.000 6.16 0.00 0.00 3.18
485 762 3.311596 GCGTTGAAGACCAGTTTAAGTGT 59.688 43.478 0.00 0.00 0.00 3.55
503 780 9.883142 TTTAAGTGTTGGAATTTTGACATTTCT 57.117 25.926 0.00 0.00 0.00 2.52
506 783 8.006298 AGTGTTGGAATTTTGACATTTCTGTA 57.994 30.769 0.00 0.00 35.14 2.74
510 787 7.214467 TGGAATTTTGACATTTCTGTAGTCC 57.786 36.000 0.00 0.00 35.14 3.85
523 800 3.162666 CTGTAGTCCACTGTAGACCCAA 58.837 50.000 2.71 0.00 34.67 4.12
526 803 2.902608 AGTCCACTGTAGACCCAATCA 58.097 47.619 2.71 0.00 34.67 2.57
558 879 0.456221 AAGAGTATGCTCGTCCACCG 59.544 55.000 5.08 0.00 46.03 4.94
564 885 1.391933 ATGCTCGTCCACCGCTGATA 61.392 55.000 0.00 0.00 36.19 2.15
566 887 1.065928 CTCGTCCACCGCTGATACC 59.934 63.158 0.00 0.00 36.19 2.73
598 926 1.609580 GGCACGTTGATACTGGACCAA 60.610 52.381 0.00 0.00 0.00 3.67
613 941 4.633980 CAAACGACTTGGCAAGCC 57.366 55.556 26.45 15.57 0.00 4.35
625 953 3.582998 TGGCAAGCCAATCTAGCTAAT 57.417 42.857 12.11 0.00 44.12 1.73
626 954 3.902218 TGGCAAGCCAATCTAGCTAATT 58.098 40.909 12.11 0.00 44.12 1.40
627 955 4.280819 TGGCAAGCCAATCTAGCTAATTT 58.719 39.130 12.11 0.00 44.12 1.82
640 972 3.019564 AGCTAATTTCAGTGGGCACATC 58.980 45.455 0.00 0.00 0.00 3.06
647 979 2.436646 GTGGGCACATCTGTCCCG 60.437 66.667 0.00 0.00 42.19 5.14
649 981 2.125106 GGGCACATCTGTCCCGTC 60.125 66.667 3.21 0.00 35.94 4.79
700 1032 3.717294 ATCACCGGCCAGTCCACC 61.717 66.667 0.00 0.00 34.01 4.61
720 1052 1.598130 GTCCACTGCCACTGGTCAC 60.598 63.158 0.00 0.00 0.00 3.67
737 1069 4.762825 CGGTCTCCGTGAAAACCA 57.237 55.556 0.00 0.00 42.73 3.67
766 1099 2.974148 CTGACTTGCCGTGCAGCA 60.974 61.111 0.00 0.00 40.61 4.41
767 1100 2.962827 CTGACTTGCCGTGCAGCAG 61.963 63.158 0.00 5.33 45.13 4.24
768 1101 4.395583 GACTTGCCGTGCAGCAGC 62.396 66.667 0.00 0.00 45.13 5.25
884 1217 2.989253 GGGGAAGCCACCAAACCG 60.989 66.667 0.00 0.00 0.00 4.44
945 1279 2.125552 TTCCTCGCATCACGCAGG 60.126 61.111 0.00 0.00 42.60 4.85
946 1280 4.819761 TCCTCGCATCACGCAGGC 62.820 66.667 0.00 0.00 42.60 4.85
991 1349 4.301027 CGTAGGGATCCGGCAGCC 62.301 72.222 5.45 0.00 0.00 4.85
1236 1594 4.849329 CGCGGCTCCTACACGGTC 62.849 72.222 0.00 0.00 0.00 4.79
1246 1613 1.668101 CTACACGGTCAGAGCCTCCC 61.668 65.000 0.00 0.00 0.00 4.30
1279 1646 2.032634 GCGATTGCAGTTCCCGTGA 61.033 57.895 0.00 0.00 42.15 4.35
1281 1648 0.670546 CGATTGCAGTTCCCGTGACT 60.671 55.000 0.00 0.00 0.00 3.41
1284 1651 1.444119 TTGCAGTTCCCGTGACTTGC 61.444 55.000 0.00 0.00 0.00 4.01
1296 1663 3.325870 CGTGACTTGCTTGGTTAGATCA 58.674 45.455 0.00 0.00 0.00 2.92
1298 1665 4.143030 CGTGACTTGCTTGGTTAGATCAAG 60.143 45.833 0.00 0.00 43.10 3.02
1310 1677 0.673644 AGATCAAGGCGTTTCGGGTG 60.674 55.000 0.00 0.00 0.00 4.61
1312 1679 0.953960 ATCAAGGCGTTTCGGGTGTC 60.954 55.000 0.00 0.00 0.00 3.67
1317 1684 2.735857 CGTTTCGGGTGTCGTCCC 60.736 66.667 3.68 3.68 43.78 4.46
1330 1697 1.069500 GTCGTCCCGTGAAATTTGTGG 60.069 52.381 0.00 0.00 0.00 4.17
1343 1710 4.692523 AATTTGTGGGAGGATTAGGGTT 57.307 40.909 0.00 0.00 0.00 4.11
1358 1725 0.036105 GGGTTACCAATTCGTCCCGT 60.036 55.000 2.98 0.00 36.50 5.28
1359 1726 1.206849 GGGTTACCAATTCGTCCCGTA 59.793 52.381 2.98 0.00 36.50 4.02
1362 1729 0.101040 TACCAATTCGTCCCGTAGCG 59.899 55.000 0.00 0.00 0.00 4.26
1370 1737 1.729838 GTCCCGTAGCGCGATCATC 60.730 63.158 12.10 0.00 44.77 2.92
1371 1738 2.801162 CCCGTAGCGCGATCATCG 60.801 66.667 12.10 10.06 44.77 3.84
1373 1740 2.051256 CGTAGCGCGATCATCGGT 60.051 61.111 12.10 12.56 44.77 4.69
1381 1760 1.332290 CGCGATCATCGGTTGATTGTG 60.332 52.381 9.59 13.80 45.29 3.33
1383 1762 2.095853 GCGATCATCGGTTGATTGTGTT 59.904 45.455 9.59 0.00 45.29 3.32
1387 1766 5.447683 CGATCATCGGTTGATTGTGTTGATT 60.448 40.000 0.00 0.00 45.29 2.57
1407 1786 1.228094 GCCTGGCTTGATAGCTCCC 60.228 63.158 12.43 0.00 46.90 4.30
1433 1812 3.013921 TGGGTAGCGATCATTCCAAAAC 58.986 45.455 0.00 0.00 0.00 2.43
1538 1928 3.483421 GGGACCAGGGTTATTAATTCGG 58.517 50.000 0.00 0.00 0.00 4.30
1564 1954 5.792741 TCCTGCCCAATTAATTTTCTTGTG 58.207 37.500 0.00 0.00 0.00 3.33
1599 1989 5.940192 TGGCTACACAACAGAATTTGTAG 57.060 39.130 7.93 7.93 42.88 2.74
1610 2000 3.689161 CAGAATTTGTAGGTTGCCATCGA 59.311 43.478 0.00 0.00 0.00 3.59
1638 2028 2.456627 AGCAAGTCAGCTTCAGGGA 58.543 52.632 0.00 0.00 43.70 4.20
1644 2034 2.178580 AGTCAGCTTCAGGGAGAGAAG 58.821 52.381 0.00 0.00 44.08 2.85
1651 2041 1.633774 TCAGGGAGAGAAGCGAAACT 58.366 50.000 0.00 0.00 0.00 2.66
1652 2042 1.546476 TCAGGGAGAGAAGCGAAACTC 59.454 52.381 0.00 0.00 0.00 3.01
1667 2057 6.028987 AGCGAAACTCGACTAAATCTTACTC 58.971 40.000 0.00 0.00 43.74 2.59
1669 2059 6.195060 GCGAAACTCGACTAAATCTTACTCTC 59.805 42.308 0.00 0.00 43.74 3.20
1670 2060 7.465989 CGAAACTCGACTAAATCTTACTCTCT 58.534 38.462 0.00 0.00 43.74 3.10
1671 2061 7.637132 CGAAACTCGACTAAATCTTACTCTCTC 59.363 40.741 0.00 0.00 43.74 3.20
1672 2062 6.930667 ACTCGACTAAATCTTACTCTCTCC 57.069 41.667 0.00 0.00 0.00 3.71
1673 2063 5.524646 ACTCGACTAAATCTTACTCTCTCCG 59.475 44.000 0.00 0.00 0.00 4.63
1674 2064 5.426504 TCGACTAAATCTTACTCTCTCCGT 58.573 41.667 0.00 0.00 0.00 4.69
1675 2065 5.523188 TCGACTAAATCTTACTCTCTCCGTC 59.477 44.000 0.00 0.00 0.00 4.79
1676 2066 5.277442 CGACTAAATCTTACTCTCTCCGTCC 60.277 48.000 0.00 0.00 0.00 4.79
1677 2067 4.575645 ACTAAATCTTACTCTCTCCGTCCG 59.424 45.833 0.00 0.00 0.00 4.79
1678 2068 1.970092 ATCTTACTCTCTCCGTCCGG 58.030 55.000 0.00 0.00 0.00 5.14
1679 2069 0.907486 TCTTACTCTCTCCGTCCGGA 59.093 55.000 0.00 0.00 42.90 5.14
1680 2070 1.280133 TCTTACTCTCTCCGTCCGGAA 59.720 52.381 5.23 0.00 44.66 4.30
1681 2071 2.089980 CTTACTCTCTCCGTCCGGAAA 58.910 52.381 5.23 0.00 44.66 3.13
1682 2072 2.431954 TACTCTCTCCGTCCGGAAAT 57.568 50.000 5.23 0.00 44.66 2.17
1683 2073 2.431954 ACTCTCTCCGTCCGGAAATA 57.568 50.000 5.23 0.00 44.66 1.40
1684 2074 2.022934 ACTCTCTCCGTCCGGAAATAC 58.977 52.381 5.23 0.00 44.66 1.89
1685 2075 2.299521 CTCTCTCCGTCCGGAAATACT 58.700 52.381 5.23 0.00 44.66 2.12
1686 2076 2.688958 CTCTCTCCGTCCGGAAATACTT 59.311 50.000 5.23 0.00 44.66 2.24
1687 2077 2.426024 TCTCTCCGTCCGGAAATACTTG 59.574 50.000 5.23 0.00 44.66 3.16
1688 2078 2.165845 CTCTCCGTCCGGAAATACTTGT 59.834 50.000 5.23 0.00 44.66 3.16
1689 2079 2.165030 TCTCCGTCCGGAAATACTTGTC 59.835 50.000 5.23 0.00 44.66 3.18
1690 2080 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1691 2081 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1692 2082 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1693 2083 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1694 2084 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1695 2085 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1696 2086 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1697 2087 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1698 2088 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1699 2089 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
1700 2090 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
1701 2091 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
1702 2092 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
1708 2098 8.421249 ACTTGTCATCAAAATGGATAAAAGGA 57.579 30.769 0.00 0.00 33.42 3.36
1709 2099 8.526147 ACTTGTCATCAAAATGGATAAAAGGAG 58.474 33.333 0.00 0.00 33.42 3.69
1710 2100 8.648698 TTGTCATCAAAATGGATAAAAGGAGA 57.351 30.769 0.00 0.00 33.42 3.71
1711 2101 8.827832 TGTCATCAAAATGGATAAAAGGAGAT 57.172 30.769 0.00 0.00 33.42 2.75
1712 2102 8.689061 TGTCATCAAAATGGATAAAAGGAGATG 58.311 33.333 0.00 0.00 33.42 2.90
1713 2103 8.689972 GTCATCAAAATGGATAAAAGGAGATGT 58.310 33.333 0.00 0.00 33.42 3.06
1714 2104 9.919416 TCATCAAAATGGATAAAAGGAGATGTA 57.081 29.630 0.00 0.00 33.42 2.29
1722 2112 8.112016 TGGATAAAAGGAGATGTATCTAGACG 57.888 38.462 0.00 0.00 37.25 4.18
1723 2113 7.724506 TGGATAAAAGGAGATGTATCTAGACGT 59.275 37.037 0.00 0.00 37.25 4.34
1724 2114 9.228949 GGATAAAAGGAGATGTATCTAGACGTA 57.771 37.037 0.00 0.00 37.25 3.57
1731 2121 9.796180 AGGAGATGTATCTAGACGTATTTTAGT 57.204 33.333 0.00 0.00 37.25 2.24
1741 2131 9.339850 TCTAGACGTATTTTAGTTCTAGATGCT 57.660 33.333 0.00 0.00 32.48 3.79
1742 2132 9.953697 CTAGACGTATTTTAGTTCTAGATGCTT 57.046 33.333 0.00 0.00 0.00 3.91
1776 2166 7.307493 TCCATTTTGATGACAAGTATTCTCG 57.693 36.000 0.00 0.00 37.32 4.04
1777 2167 6.316140 TCCATTTTGATGACAAGTATTCTCGG 59.684 38.462 0.00 0.00 37.32 4.63
1778 2168 6.316140 CCATTTTGATGACAAGTATTCTCGGA 59.684 38.462 0.00 0.00 37.32 4.55
1779 2169 6.721571 TTTTGATGACAAGTATTCTCGGAC 57.278 37.500 0.00 0.00 37.32 4.79
1780 2170 4.028852 TGATGACAAGTATTCTCGGACG 57.971 45.455 0.00 0.00 0.00 4.79
1781 2171 2.933495 TGACAAGTATTCTCGGACGG 57.067 50.000 0.00 0.00 0.00 4.79
1782 2172 2.439409 TGACAAGTATTCTCGGACGGA 58.561 47.619 0.00 0.00 0.00 4.69
1783 2173 2.422479 TGACAAGTATTCTCGGACGGAG 59.578 50.000 3.68 3.68 44.58 4.63
1784 2174 1.749634 ACAAGTATTCTCGGACGGAGG 59.250 52.381 9.88 0.00 43.34 4.30
1785 2175 1.067212 CAAGTATTCTCGGACGGAGGG 59.933 57.143 9.88 0.00 43.34 4.30
1786 2176 0.549950 AGTATTCTCGGACGGAGGGA 59.450 55.000 9.88 0.77 43.34 4.20
1787 2177 0.953003 GTATTCTCGGACGGAGGGAG 59.047 60.000 9.88 0.00 43.34 4.30
1788 2178 0.549950 TATTCTCGGACGGAGGGAGT 59.450 55.000 9.88 0.00 43.34 3.85
1789 2179 0.549950 ATTCTCGGACGGAGGGAGTA 59.450 55.000 9.88 0.00 43.34 2.59
1790 2180 0.393537 TTCTCGGACGGAGGGAGTAC 60.394 60.000 9.88 0.00 43.34 2.73
1791 2181 1.224039 CTCGGACGGAGGGAGTACT 59.776 63.158 0.00 0.00 39.22 2.73
1848 2238 6.987404 GGTTATTGAGCAAAACCAAAAGGTAA 59.013 34.615 15.80 0.00 41.89 2.85
1894 2284 3.825328 ACAACTGCTTGTTCCATCTCTT 58.175 40.909 0.00 0.00 37.31 2.85
1897 2287 4.090761 ACTGCTTGTTCCATCTCTTTGA 57.909 40.909 0.00 0.00 0.00 2.69
1917 2311 5.426689 TGAGATACTGAAGAAACTGCCAT 57.573 39.130 0.00 0.00 0.00 4.40
1944 2338 5.840243 TCAATCTTCTGGCCAAACATATG 57.160 39.130 7.01 0.00 0.00 1.78
2127 2529 3.338249 ACGTTGGATTGAGAAGTCATGG 58.662 45.455 0.00 0.00 30.85 3.66
2224 2628 4.082408 TGTTGTCTACAGGACCGTATCTTG 60.082 45.833 0.00 0.00 43.89 3.02
2347 2751 0.882042 AAGCTCAGGCACGTGTTCTG 60.882 55.000 24.91 24.91 41.70 3.02
2362 2766 1.476488 GTTCTGGAGAGACTGAGAGGC 59.524 57.143 0.00 0.00 0.00 4.70
2459 2863 1.200252 TCGACTTCGGAAGCAGAGAAG 59.800 52.381 17.37 8.88 44.86 2.85
2687 3091 2.815503 TGTCTCGATGGTTTCTACGACA 59.184 45.455 0.00 0.00 0.00 4.35
2792 3196 4.393680 GCCCATACTGTCGAACAAACATAA 59.606 41.667 0.00 0.00 0.00 1.90
2804 3208 1.212250 AAACATAAGGTCCCGGCCCT 61.212 55.000 5.12 5.12 0.00 5.19
2812 3216 3.083349 TCCCGGCCCTGATGACAG 61.083 66.667 0.00 0.00 43.12 3.51
2865 3269 3.714798 GGGGGTATGACCTTATGACTTCA 59.285 47.826 0.00 0.00 38.64 3.02
3103 3507 8.576442 ACATACTTTTACCAACAAATCTTGAGG 58.424 33.333 0.00 0.00 36.15 3.86
3157 3644 5.957796 GCATTAGCAAGTACATTTACGTGTC 59.042 40.000 0.00 0.79 39.23 3.67
3159 3646 7.676338 GCATTAGCAAGTACATTTACGTGTCAT 60.676 37.037 0.00 0.00 39.23 3.06
3162 3649 6.966021 AGCAAGTACATTTACGTGTCATTTT 58.034 32.000 0.00 0.00 39.23 1.82
3195 3724 6.625873 ATTTCTCCAAAACTCTTCTGTGAC 57.374 37.500 0.00 0.00 0.00 3.67
3196 3725 5.359194 TTCTCCAAAACTCTTCTGTGACT 57.641 39.130 0.00 0.00 0.00 3.41
3197 3726 4.697514 TCTCCAAAACTCTTCTGTGACTG 58.302 43.478 0.00 0.00 0.00 3.51
3198 3727 3.808728 TCCAAAACTCTTCTGTGACTGG 58.191 45.455 0.00 0.00 0.00 4.00
3199 3728 3.454447 TCCAAAACTCTTCTGTGACTGGA 59.546 43.478 0.00 0.00 0.00 3.86
3200 3729 3.812053 CCAAAACTCTTCTGTGACTGGAG 59.188 47.826 0.00 0.00 0.00 3.86
3201 3730 4.446371 CAAAACTCTTCTGTGACTGGAGT 58.554 43.478 0.00 0.00 38.66 3.85
3202 3731 4.762289 AAACTCTTCTGTGACTGGAGTT 57.238 40.909 7.81 7.81 45.39 3.01
3203 3732 4.762289 AACTCTTCTGTGACTGGAGTTT 57.238 40.909 7.81 0.00 42.29 2.66
3204 3733 4.329462 ACTCTTCTGTGACTGGAGTTTC 57.671 45.455 0.00 0.00 34.13 2.78
3205 3734 3.070302 ACTCTTCTGTGACTGGAGTTTCC 59.930 47.826 0.00 0.00 34.13 3.13
3206 3735 2.368875 TCTTCTGTGACTGGAGTTTCCC 59.631 50.000 0.00 0.00 35.03 3.97
3207 3736 1.056660 TCTGTGACTGGAGTTTCCCC 58.943 55.000 0.00 0.00 35.03 4.81
3208 3737 1.059913 CTGTGACTGGAGTTTCCCCT 58.940 55.000 0.00 0.00 35.03 4.79
3209 3738 1.421646 CTGTGACTGGAGTTTCCCCTT 59.578 52.381 0.00 0.00 35.03 3.95
3210 3739 1.850345 TGTGACTGGAGTTTCCCCTTT 59.150 47.619 0.00 0.00 35.03 3.11
3211 3740 2.243736 TGTGACTGGAGTTTCCCCTTTT 59.756 45.455 0.00 0.00 35.03 2.27
3212 3741 3.296854 GTGACTGGAGTTTCCCCTTTTT 58.703 45.455 0.00 0.00 35.03 1.94
3229 3758 3.731652 TTTTTGGTGGCAACTCATGAG 57.268 42.857 21.37 21.37 37.61 2.90
3230 3759 2.363306 TTTGGTGGCAACTCATGAGT 57.637 45.000 22.89 22.89 44.94 3.41
3231 3760 1.608055 TTGGTGGCAACTCATGAGTG 58.392 50.000 28.52 21.40 41.58 3.51
3232 3761 0.250858 TGGTGGCAACTCATGAGTGG 60.251 55.000 28.52 26.08 41.58 4.00
3233 3762 0.962356 GGTGGCAACTCATGAGTGGG 60.962 60.000 28.52 22.89 41.58 4.61
3234 3763 0.036732 GTGGCAACTCATGAGTGGGA 59.963 55.000 28.52 10.64 41.58 4.37
3287 3816 8.152023 GGGGGTATATCTTCTGTATCTGAATT 57.848 38.462 0.00 0.00 0.00 2.17
3317 3846 0.822121 AAGGCCTTGTTCGGTTGTCC 60.822 55.000 19.73 0.00 0.00 4.02
3379 3908 2.127708 GGTGATCCCCCTACTTGTCAT 58.872 52.381 0.00 0.00 0.00 3.06
3452 3983 9.170734 GTTCGGTTACTCCCTTTTTATATTCTT 57.829 33.333 0.00 0.00 0.00 2.52
3531 4104 2.032620 GAGAAGAGGCTTACCGGATGA 58.967 52.381 9.46 0.00 42.76 2.92
3674 4292 2.221055 GCTCGAACTTTTTCTTCTCGCA 59.779 45.455 0.00 0.00 0.00 5.10
3680 4298 2.415512 ACTTTTTCTTCTCGCATACCGC 59.584 45.455 0.00 0.00 36.73 5.68
3709 4327 1.077716 GTGGGAGGGATTGGTTCCG 60.078 63.158 0.00 0.00 46.52 4.30
3716 4334 1.078285 GGATTGGTTCCGCGGGTAA 60.078 57.895 27.83 10.79 33.93 2.85
3721 4339 2.664398 GTTCCGCGGGTAAAGGGA 59.336 61.111 27.83 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.804156 GCACAGAAGAGAGCCGCTAC 60.804 60.000 0.00 0.00 0.00 3.58
2 3 2.264166 GCACAGAAGAGAGCCGCT 59.736 61.111 0.00 0.00 0.00 5.52
3 4 2.817396 GGCACAGAAGAGAGCCGC 60.817 66.667 0.00 0.00 37.41 6.53
6 7 1.803555 GAAACAGGCACAGAAGAGAGC 59.196 52.381 0.00 0.00 0.00 4.09
13 14 1.664649 CGAGCGAAACAGGCACAGA 60.665 57.895 0.00 0.00 0.00 3.41
14 15 2.856032 CGAGCGAAACAGGCACAG 59.144 61.111 0.00 0.00 0.00 3.66
15 16 3.345808 GCGAGCGAAACAGGCACA 61.346 61.111 0.00 0.00 0.00 4.57
16 17 3.016474 GAGCGAGCGAAACAGGCAC 62.016 63.158 0.00 0.00 0.00 5.01
17 18 2.715532 AAGAGCGAGCGAAACAGGCA 62.716 55.000 0.00 0.00 0.00 4.75
18 19 1.960994 GAAGAGCGAGCGAAACAGGC 61.961 60.000 0.00 0.00 0.00 4.85
19 20 1.355066 GGAAGAGCGAGCGAAACAGG 61.355 60.000 0.00 0.00 0.00 4.00
20 21 0.667487 TGGAAGAGCGAGCGAAACAG 60.667 55.000 0.00 0.00 0.00 3.16
21 22 0.249699 TTGGAAGAGCGAGCGAAACA 60.250 50.000 0.00 0.00 0.00 2.83
22 23 0.440371 CTTGGAAGAGCGAGCGAAAC 59.560 55.000 0.00 0.00 0.00 2.78
23 24 0.317160 TCTTGGAAGAGCGAGCGAAA 59.683 50.000 0.00 0.00 0.00 3.46
24 25 0.317160 TTCTTGGAAGAGCGAGCGAA 59.683 50.000 0.00 0.00 36.22 4.70
25 26 0.388649 GTTCTTGGAAGAGCGAGCGA 60.389 55.000 0.00 0.00 36.22 4.93
26 27 2.074124 GTTCTTGGAAGAGCGAGCG 58.926 57.895 0.00 0.00 36.22 5.03
31 32 0.790814 CCGAACGTTCTTGGAAGAGC 59.209 55.000 24.80 0.00 36.22 4.09
32 33 2.150397 ACCGAACGTTCTTGGAAGAG 57.850 50.000 24.80 7.56 36.22 2.85
33 34 2.159071 TCAACCGAACGTTCTTGGAAGA 60.159 45.455 24.80 17.75 29.93 2.87
34 35 2.206750 TCAACCGAACGTTCTTGGAAG 58.793 47.619 24.80 16.11 29.93 3.46
35 36 2.312722 TCAACCGAACGTTCTTGGAA 57.687 45.000 24.80 7.07 29.93 3.53
36 37 1.935199 GTTCAACCGAACGTTCTTGGA 59.065 47.619 24.80 15.57 42.05 3.53
37 38 2.378507 GTTCAACCGAACGTTCTTGG 57.621 50.000 24.80 20.92 42.05 3.61
46 47 1.341852 TCGATCACTGGTTCAACCGAA 59.658 47.619 1.02 0.00 42.58 4.30
47 48 0.963225 TCGATCACTGGTTCAACCGA 59.037 50.000 1.02 0.00 42.58 4.69
48 49 1.350193 CTCGATCACTGGTTCAACCG 58.650 55.000 1.02 0.00 42.58 4.44
49 50 1.079503 GCTCGATCACTGGTTCAACC 58.920 55.000 0.00 0.00 39.22 3.77
50 51 1.079503 GGCTCGATCACTGGTTCAAC 58.920 55.000 0.00 0.00 0.00 3.18
51 52 0.684535 TGGCTCGATCACTGGTTCAA 59.315 50.000 0.00 0.00 0.00 2.69
52 53 0.247460 CTGGCTCGATCACTGGTTCA 59.753 55.000 0.00 0.00 0.00 3.18
53 54 0.460987 CCTGGCTCGATCACTGGTTC 60.461 60.000 0.00 0.00 0.00 3.62
54 55 1.599047 CCTGGCTCGATCACTGGTT 59.401 57.895 0.00 0.00 0.00 3.67
55 56 3.023949 GCCTGGCTCGATCACTGGT 62.024 63.158 12.43 0.00 0.00 4.00
56 57 2.202987 GCCTGGCTCGATCACTGG 60.203 66.667 12.43 0.00 0.00 4.00
57 58 1.145598 ATGCCTGGCTCGATCACTG 59.854 57.895 21.03 0.00 0.00 3.66
58 59 1.145598 CATGCCTGGCTCGATCACT 59.854 57.895 21.03 0.00 0.00 3.41
59 60 1.153289 ACATGCCTGGCTCGATCAC 60.153 57.895 21.03 0.00 0.00 3.06
60 61 1.153309 CACATGCCTGGCTCGATCA 60.153 57.895 21.03 0.00 0.00 2.92
61 62 0.462581 TTCACATGCCTGGCTCGATC 60.463 55.000 21.03 0.00 0.00 3.69
62 63 0.035152 TTTCACATGCCTGGCTCGAT 60.035 50.000 21.03 1.71 0.00 3.59
63 64 0.955428 GTTTCACATGCCTGGCTCGA 60.955 55.000 21.03 7.95 0.00 4.04
64 65 1.503542 GTTTCACATGCCTGGCTCG 59.496 57.895 21.03 13.02 0.00 5.03
65 66 0.955428 TCGTTTCACATGCCTGGCTC 60.955 55.000 21.03 0.00 0.00 4.70
66 67 1.073025 TCGTTTCACATGCCTGGCT 59.927 52.632 21.03 2.27 0.00 4.75
67 68 1.210155 GTCGTTTCACATGCCTGGC 59.790 57.895 12.87 12.87 0.00 4.85
68 69 0.888736 TGGTCGTTTCACATGCCTGG 60.889 55.000 0.00 0.00 0.00 4.45
69 70 0.518636 CTGGTCGTTTCACATGCCTG 59.481 55.000 0.00 0.00 0.00 4.85
70 71 0.606401 CCTGGTCGTTTCACATGCCT 60.606 55.000 0.00 0.00 0.00 4.75
71 72 1.586154 CCCTGGTCGTTTCACATGCC 61.586 60.000 0.00 0.00 0.00 4.40
72 73 1.586154 CCCCTGGTCGTTTCACATGC 61.586 60.000 0.00 0.00 0.00 4.06
73 74 1.586154 GCCCCTGGTCGTTTCACATG 61.586 60.000 0.00 0.00 0.00 3.21
74 75 1.303317 GCCCCTGGTCGTTTCACAT 60.303 57.895 0.00 0.00 0.00 3.21
75 76 2.112297 GCCCCTGGTCGTTTCACA 59.888 61.111 0.00 0.00 0.00 3.58
76 77 1.104577 TTTGCCCCTGGTCGTTTCAC 61.105 55.000 0.00 0.00 0.00 3.18
77 78 0.395862 TTTTGCCCCTGGTCGTTTCA 60.396 50.000 0.00 0.00 0.00 2.69
78 79 0.966179 ATTTTGCCCCTGGTCGTTTC 59.034 50.000 0.00 0.00 0.00 2.78
79 80 0.966179 GATTTTGCCCCTGGTCGTTT 59.034 50.000 0.00 0.00 0.00 3.60
80 81 1.241315 CGATTTTGCCCCTGGTCGTT 61.241 55.000 0.00 0.00 0.00 3.85
81 82 1.674322 CGATTTTGCCCCTGGTCGT 60.674 57.895 0.00 0.00 0.00 4.34
82 83 1.644786 GACGATTTTGCCCCTGGTCG 61.645 60.000 0.00 0.00 35.42 4.79
83 84 1.313091 GGACGATTTTGCCCCTGGTC 61.313 60.000 0.00 0.00 0.00 4.02
84 85 1.304134 GGACGATTTTGCCCCTGGT 60.304 57.895 0.00 0.00 0.00 4.00
85 86 0.254747 TAGGACGATTTTGCCCCTGG 59.745 55.000 0.00 0.00 0.00 4.45
86 87 1.339631 TGTAGGACGATTTTGCCCCTG 60.340 52.381 0.00 0.00 0.00 4.45
87 88 0.988832 TGTAGGACGATTTTGCCCCT 59.011 50.000 0.00 0.00 0.00 4.79
88 89 1.828979 TTGTAGGACGATTTTGCCCC 58.171 50.000 0.00 0.00 0.00 5.80
89 90 3.926821 TTTTGTAGGACGATTTTGCCC 57.073 42.857 0.00 0.00 0.00 5.36
90 91 6.691388 GTCATATTTTGTAGGACGATTTTGCC 59.309 38.462 0.00 0.00 0.00 4.52
91 92 7.665080 GTCATATTTTGTAGGACGATTTTGC 57.335 36.000 0.00 0.00 0.00 3.68
99 100 4.034048 CCAGCACGTCATATTTTGTAGGAC 59.966 45.833 0.00 0.00 0.00 3.85
100 101 4.188462 CCAGCACGTCATATTTTGTAGGA 58.812 43.478 0.00 0.00 0.00 2.94
101 102 3.242739 GCCAGCACGTCATATTTTGTAGG 60.243 47.826 0.00 0.00 0.00 3.18
102 103 3.242739 GGCCAGCACGTCATATTTTGTAG 60.243 47.826 0.00 0.00 0.00 2.74
103 104 2.680841 GGCCAGCACGTCATATTTTGTA 59.319 45.455 0.00 0.00 0.00 2.41
104 105 1.472480 GGCCAGCACGTCATATTTTGT 59.528 47.619 0.00 0.00 0.00 2.83
105 106 1.202290 GGGCCAGCACGTCATATTTTG 60.202 52.381 4.39 0.00 0.00 2.44
106 107 1.102978 GGGCCAGCACGTCATATTTT 58.897 50.000 4.39 0.00 0.00 1.82
107 108 0.034574 TGGGCCAGCACGTCATATTT 60.035 50.000 0.00 0.00 0.00 1.40
108 109 0.183492 ATGGGCCAGCACGTCATATT 59.817 50.000 13.78 0.00 0.00 1.28
109 110 1.055849 TATGGGCCAGCACGTCATAT 58.944 50.000 13.78 0.00 0.00 1.78
110 111 0.105964 GTATGGGCCAGCACGTCATA 59.894 55.000 13.78 0.00 0.00 2.15
111 112 1.153168 GTATGGGCCAGCACGTCAT 60.153 57.895 13.78 0.00 0.00 3.06
112 113 2.267642 GTATGGGCCAGCACGTCA 59.732 61.111 13.78 0.00 0.00 4.35
113 114 1.682451 TAGGTATGGGCCAGCACGTC 61.682 60.000 13.78 0.95 0.00 4.34
114 115 1.686325 CTAGGTATGGGCCAGCACGT 61.686 60.000 13.78 15.94 0.00 4.49
115 116 1.069765 CTAGGTATGGGCCAGCACG 59.930 63.158 13.78 0.00 0.00 5.34
116 117 0.394565 CTCTAGGTATGGGCCAGCAC 59.605 60.000 13.78 12.50 0.00 4.40
117 118 0.264657 TCTCTAGGTATGGGCCAGCA 59.735 55.000 13.78 0.00 0.00 4.41
118 119 1.346068 CTTCTCTAGGTATGGGCCAGC 59.654 57.143 13.78 7.41 0.00 4.85
119 120 1.974236 CCTTCTCTAGGTATGGGCCAG 59.026 57.143 13.78 0.00 39.39 4.85
120 121 1.578703 TCCTTCTCTAGGTATGGGCCA 59.421 52.381 9.61 9.61 45.03 5.36
121 122 2.400467 TCCTTCTCTAGGTATGGGCC 57.600 55.000 0.00 0.00 45.03 5.80
122 123 3.967987 TCTTTCCTTCTCTAGGTATGGGC 59.032 47.826 0.00 0.00 45.03 5.36
123 124 6.561519 TTTCTTTCCTTCTCTAGGTATGGG 57.438 41.667 0.00 0.00 45.03 4.00
124 125 8.103935 AGTTTTTCTTTCCTTCTCTAGGTATGG 58.896 37.037 0.00 0.00 45.03 2.74
125 126 9.508642 AAGTTTTTCTTTCCTTCTCTAGGTATG 57.491 33.333 0.00 0.00 45.03 2.39
126 127 9.508642 CAAGTTTTTCTTTCCTTCTCTAGGTAT 57.491 33.333 0.00 0.00 38.58 2.73
127 128 8.711170 TCAAGTTTTTCTTTCCTTCTCTAGGTA 58.289 33.333 0.00 0.00 38.58 3.08
128 129 7.574607 TCAAGTTTTTCTTTCCTTCTCTAGGT 58.425 34.615 0.00 0.00 38.58 3.08
129 130 8.628630 ATCAAGTTTTTCTTTCCTTCTCTAGG 57.371 34.615 0.00 0.00 38.71 3.02
132 133 8.753133 ACAAATCAAGTTTTTCTTTCCTTCTCT 58.247 29.630 0.00 0.00 33.63 3.10
133 134 8.811378 CACAAATCAAGTTTTTCTTTCCTTCTC 58.189 33.333 0.00 0.00 33.63 2.87
134 135 8.314021 ACACAAATCAAGTTTTTCTTTCCTTCT 58.686 29.630 0.00 0.00 33.63 2.85
135 136 8.479313 ACACAAATCAAGTTTTTCTTTCCTTC 57.521 30.769 0.00 0.00 33.63 3.46
136 137 8.093927 TGACACAAATCAAGTTTTTCTTTCCTT 58.906 29.630 0.00 0.00 33.63 3.36
137 138 7.610865 TGACACAAATCAAGTTTTTCTTTCCT 58.389 30.769 0.00 0.00 33.63 3.36
138 139 7.826260 TGACACAAATCAAGTTTTTCTTTCC 57.174 32.000 0.00 0.00 33.63 3.13
145 146 9.829507 TGGATTAAATGACACAAATCAAGTTTT 57.170 25.926 7.95 0.00 31.38 2.43
146 147 9.480053 CTGGATTAAATGACACAAATCAAGTTT 57.520 29.630 7.95 0.00 31.38 2.66
147 148 7.599998 GCTGGATTAAATGACACAAATCAAGTT 59.400 33.333 10.26 0.00 33.63 2.66
148 149 7.039504 AGCTGGATTAAATGACACAAATCAAGT 60.040 33.333 10.26 0.00 33.63 3.16
149 150 7.274904 CAGCTGGATTAAATGACACAAATCAAG 59.725 37.037 5.57 6.38 34.04 3.02
150 151 7.092079 CAGCTGGATTAAATGACACAAATCAA 58.908 34.615 5.57 0.00 31.38 2.57
151 152 6.209192 ACAGCTGGATTAAATGACACAAATCA 59.791 34.615 19.93 0.00 31.38 2.57
152 153 6.624423 ACAGCTGGATTAAATGACACAAATC 58.376 36.000 19.93 0.00 0.00 2.17
153 154 6.209192 TGACAGCTGGATTAAATGACACAAAT 59.791 34.615 19.93 0.00 0.00 2.32
154 155 5.534278 TGACAGCTGGATTAAATGACACAAA 59.466 36.000 19.93 0.00 0.00 2.83
155 156 5.069318 TGACAGCTGGATTAAATGACACAA 58.931 37.500 19.93 0.00 0.00 3.33
156 157 4.650734 TGACAGCTGGATTAAATGACACA 58.349 39.130 19.93 0.00 0.00 3.72
157 158 5.627499 TTGACAGCTGGATTAAATGACAC 57.373 39.130 19.93 0.00 0.00 3.67
158 159 5.945191 TGATTGACAGCTGGATTAAATGACA 59.055 36.000 19.93 3.22 0.00 3.58
159 160 6.441093 TGATTGACAGCTGGATTAAATGAC 57.559 37.500 19.93 0.87 0.00 3.06
160 161 7.465353 TTTGATTGACAGCTGGATTAAATGA 57.535 32.000 19.93 1.73 0.00 2.57
161 162 8.195436 AGATTTGATTGACAGCTGGATTAAATG 58.805 33.333 22.43 0.00 0.00 2.32
162 163 8.302515 AGATTTGATTGACAGCTGGATTAAAT 57.697 30.769 19.93 19.85 0.00 1.40
163 164 7.707624 AGATTTGATTGACAGCTGGATTAAA 57.292 32.000 19.93 16.52 0.00 1.52
164 165 8.843262 CATAGATTTGATTGACAGCTGGATTAA 58.157 33.333 19.93 9.08 0.00 1.40
165 166 7.994911 ACATAGATTTGATTGACAGCTGGATTA 59.005 33.333 19.93 3.11 0.00 1.75
166 167 6.832384 ACATAGATTTGATTGACAGCTGGATT 59.168 34.615 19.93 0.00 0.00 3.01
167 168 6.363065 ACATAGATTTGATTGACAGCTGGAT 58.637 36.000 19.93 8.93 0.00 3.41
168 169 5.748402 ACATAGATTTGATTGACAGCTGGA 58.252 37.500 19.93 3.74 0.00 3.86
169 170 5.587443 TGACATAGATTTGATTGACAGCTGG 59.413 40.000 19.93 0.00 0.00 4.85
170 171 6.673154 TGACATAGATTTGATTGACAGCTG 57.327 37.500 13.48 13.48 0.00 4.24
171 172 7.281098 AGATGACATAGATTTGATTGACAGCT 58.719 34.615 0.00 0.00 0.00 4.24
172 173 7.493743 AGATGACATAGATTTGATTGACAGC 57.506 36.000 0.00 0.00 0.00 4.40
204 205 9.506018 TGATCTCATGACACATCTTTCTTTTAA 57.494 29.630 0.00 0.00 0.00 1.52
205 206 9.506018 TTGATCTCATGACACATCTTTCTTTTA 57.494 29.630 0.00 0.00 0.00 1.52
206 207 7.991084 TGATCTCATGACACATCTTTCTTTT 57.009 32.000 0.00 0.00 0.00 2.27
207 208 7.991084 TTGATCTCATGACACATCTTTCTTT 57.009 32.000 0.00 0.00 0.00 2.52
208 209 7.664731 ACTTTGATCTCATGACACATCTTTCTT 59.335 33.333 0.00 0.00 0.00 2.52
209 210 7.166851 ACTTTGATCTCATGACACATCTTTCT 58.833 34.615 0.00 0.00 0.00 2.52
210 211 7.333921 AGACTTTGATCTCATGACACATCTTTC 59.666 37.037 0.00 0.00 0.00 2.62
211 212 7.166851 AGACTTTGATCTCATGACACATCTTT 58.833 34.615 0.00 0.00 0.00 2.52
212 213 6.709281 AGACTTTGATCTCATGACACATCTT 58.291 36.000 0.00 0.00 0.00 2.40
213 214 6.297080 AGACTTTGATCTCATGACACATCT 57.703 37.500 0.00 0.00 0.00 2.90
214 215 6.586868 GAGACTTTGATCTCATGACACATC 57.413 41.667 0.00 0.00 43.99 3.06
224 225 5.223382 TGACGTTTCTGAGACTTTGATCTC 58.777 41.667 0.00 0.00 44.68 2.75
225 226 5.201713 TGACGTTTCTGAGACTTTGATCT 57.798 39.130 0.00 0.00 0.00 2.75
226 227 7.763172 ATATGACGTTTCTGAGACTTTGATC 57.237 36.000 0.00 0.00 0.00 2.92
227 228 9.823647 ATAATATGACGTTTCTGAGACTTTGAT 57.176 29.630 0.00 0.00 0.00 2.57
228 229 9.302345 GATAATATGACGTTTCTGAGACTTTGA 57.698 33.333 0.00 0.00 0.00 2.69
229 230 8.543774 GGATAATATGACGTTTCTGAGACTTTG 58.456 37.037 0.00 0.00 0.00 2.77
230 231 8.258007 TGGATAATATGACGTTTCTGAGACTTT 58.742 33.333 0.00 0.00 0.00 2.66
231 232 7.782049 TGGATAATATGACGTTTCTGAGACTT 58.218 34.615 0.00 0.00 0.00 3.01
232 233 7.348080 TGGATAATATGACGTTTCTGAGACT 57.652 36.000 0.00 0.00 0.00 3.24
233 234 8.594881 AATGGATAATATGACGTTTCTGAGAC 57.405 34.615 0.00 0.00 0.00 3.36
234 235 9.045223 CAAATGGATAATATGACGTTTCTGAGA 57.955 33.333 0.00 0.00 0.00 3.27
235 236 7.800380 GCAAATGGATAATATGACGTTTCTGAG 59.200 37.037 0.00 0.00 0.00 3.35
236 237 7.498900 AGCAAATGGATAATATGACGTTTCTGA 59.501 33.333 0.00 0.00 0.00 3.27
237 238 7.642669 AGCAAATGGATAATATGACGTTTCTG 58.357 34.615 0.00 0.00 0.00 3.02
238 239 7.307396 CGAGCAAATGGATAATATGACGTTTCT 60.307 37.037 0.00 0.00 0.00 2.52
239 240 6.792250 CGAGCAAATGGATAATATGACGTTTC 59.208 38.462 0.00 0.00 0.00 2.78
240 241 6.293407 CCGAGCAAATGGATAATATGACGTTT 60.293 38.462 0.00 0.00 0.00 3.60
241 242 5.179368 CCGAGCAAATGGATAATATGACGTT 59.821 40.000 0.00 0.00 0.00 3.99
242 243 4.690748 CCGAGCAAATGGATAATATGACGT 59.309 41.667 0.00 0.00 0.00 4.34
243 244 4.093408 CCCGAGCAAATGGATAATATGACG 59.907 45.833 0.00 0.00 0.00 4.35
244 245 5.245531 TCCCGAGCAAATGGATAATATGAC 58.754 41.667 0.00 0.00 0.00 3.06
245 246 5.497464 TCCCGAGCAAATGGATAATATGA 57.503 39.130 0.00 0.00 0.00 2.15
246 247 5.106157 GGTTCCCGAGCAAATGGATAATATG 60.106 44.000 0.00 0.00 0.00 1.78
247 248 5.010282 GGTTCCCGAGCAAATGGATAATAT 58.990 41.667 0.00 0.00 0.00 1.28
248 249 4.104102 AGGTTCCCGAGCAAATGGATAATA 59.896 41.667 0.00 0.00 0.00 0.98
249 250 3.117512 AGGTTCCCGAGCAAATGGATAAT 60.118 43.478 0.00 0.00 0.00 1.28
250 251 2.241176 AGGTTCCCGAGCAAATGGATAA 59.759 45.455 0.00 0.00 0.00 1.75
251 252 1.843851 AGGTTCCCGAGCAAATGGATA 59.156 47.619 0.00 0.00 0.00 2.59
252 253 0.625849 AGGTTCCCGAGCAAATGGAT 59.374 50.000 0.00 0.00 0.00 3.41
253 254 0.035439 GAGGTTCCCGAGCAAATGGA 60.035 55.000 0.00 0.00 0.00 3.41
254 255 1.032114 GGAGGTTCCCGAGCAAATGG 61.032 60.000 0.00 0.00 0.00 3.16
255 256 0.322456 TGGAGGTTCCCGAGCAAATG 60.322 55.000 0.00 0.00 35.03 2.32
256 257 0.322546 GTGGAGGTTCCCGAGCAAAT 60.323 55.000 0.00 0.00 35.03 2.32
257 258 1.072505 GTGGAGGTTCCCGAGCAAA 59.927 57.895 0.00 0.00 35.03 3.68
258 259 2.747686 GTGGAGGTTCCCGAGCAA 59.252 61.111 0.00 0.00 35.03 3.91
259 260 3.319198 GGTGGAGGTTCCCGAGCA 61.319 66.667 0.00 0.00 35.03 4.26
260 261 3.003763 AGGTGGAGGTTCCCGAGC 61.004 66.667 0.00 0.00 35.03 5.03
261 262 1.305381 AGAGGTGGAGGTTCCCGAG 60.305 63.158 0.00 0.00 35.03 4.63
262 263 1.305046 GAGAGGTGGAGGTTCCCGA 60.305 63.158 0.00 0.00 35.03 5.14
263 264 0.978146 ATGAGAGGTGGAGGTTCCCG 60.978 60.000 0.00 0.00 35.03 5.14
283 284 2.713967 TACAACGGCGAGCCCCTAC 61.714 63.158 16.62 0.00 0.00 3.18
300 302 9.753674 ATTCATAGGAATGGAGTTTCAAAAGTA 57.246 29.630 1.00 0.00 42.10 2.24
332 334 4.057428 GAGCCGACGGAGCACTGT 62.057 66.667 20.50 0.00 38.45 3.55
361 363 5.998363 AGTCGAGCTCAAGAATTAAACCTTT 59.002 36.000 15.40 0.00 0.00 3.11
371 373 3.321111 ACCAAGTTAGTCGAGCTCAAGAA 59.679 43.478 15.40 0.00 0.00 2.52
373 375 3.305398 ACCAAGTTAGTCGAGCTCAAG 57.695 47.619 15.40 0.00 0.00 3.02
381 383 5.640189 TCCTAAGAGAACCAAGTTAGTCG 57.360 43.478 0.00 0.00 0.00 4.18
403 405 4.899502 ACTCTATGTTTGCTTGTAGTGCT 58.100 39.130 0.00 0.00 0.00 4.40
404 406 6.369065 AGTTACTCTATGTTTGCTTGTAGTGC 59.631 38.462 0.00 0.00 0.00 4.40
405 407 7.622256 GCAGTTACTCTATGTTTGCTTGTAGTG 60.622 40.741 0.00 0.00 0.00 2.74
406 408 6.369065 GCAGTTACTCTATGTTTGCTTGTAGT 59.631 38.462 0.00 0.00 0.00 2.73
421 698 3.307762 GGGATTGACAAGGCAGTTACTCT 60.308 47.826 0.00 0.00 0.00 3.24
424 701 2.790433 TGGGATTGACAAGGCAGTTAC 58.210 47.619 0.00 0.00 0.00 2.50
436 713 6.547141 GTGATGGACTTTATTCATGGGATTGA 59.453 38.462 0.00 0.00 0.00 2.57
459 736 1.299541 AACTGGTCTTCAACGCTGTG 58.700 50.000 0.00 0.00 0.00 3.66
461 738 3.560068 ACTTAAACTGGTCTTCAACGCTG 59.440 43.478 0.00 0.00 0.00 5.18
467 744 5.105567 TCCAACACTTAAACTGGTCTTCA 57.894 39.130 0.00 0.00 0.00 3.02
468 745 6.635030 ATTCCAACACTTAAACTGGTCTTC 57.365 37.500 0.00 0.00 0.00 2.87
469 746 7.418337 AAATTCCAACACTTAAACTGGTCTT 57.582 32.000 0.00 0.00 0.00 3.01
485 762 7.286546 TGGACTACAGAAATGTCAAAATTCCAA 59.713 33.333 0.00 0.00 32.84 3.53
503 780 2.984435 TGGGTCTACAGTGGACTACA 57.016 50.000 16.00 12.50 34.47 2.74
506 783 2.902608 TGATTGGGTCTACAGTGGACT 58.097 47.619 16.00 0.00 34.47 3.85
510 787 6.536582 CAGTTCTATTGATTGGGTCTACAGTG 59.463 42.308 0.00 0.00 0.00 3.66
523 800 8.263640 AGCATACTCTTCAACAGTTCTATTGAT 58.736 33.333 0.00 0.00 0.00 2.57
526 803 6.754209 CGAGCATACTCTTCAACAGTTCTATT 59.246 38.462 0.00 0.00 41.09 1.73
558 879 0.753262 AGTGATGGTCCGGTATCAGC 59.247 55.000 15.57 9.85 34.25 4.26
564 885 2.927856 TGCCAGTGATGGTCCGGT 60.928 61.111 0.00 0.00 0.00 5.28
566 887 2.815211 CGTGCCAGTGATGGTCCG 60.815 66.667 0.00 0.00 0.00 4.79
579 907 1.803334 TTGGTCCAGTATCAACGTGC 58.197 50.000 0.00 0.00 0.00 5.34
598 926 0.598065 GATTGGCTTGCCAAGTCGTT 59.402 50.000 27.60 13.89 35.37 3.85
613 941 4.883585 TGCCCACTGAAATTAGCTAGATTG 59.116 41.667 0.00 0.00 0.00 2.67
624 952 2.440409 GACAGATGTGCCCACTGAAAT 58.560 47.619 0.00 0.00 35.85 2.17
625 953 1.545428 GGACAGATGTGCCCACTGAAA 60.545 52.381 0.00 0.00 35.85 2.69
626 954 0.036732 GGACAGATGTGCCCACTGAA 59.963 55.000 0.00 0.00 35.85 3.02
627 955 1.679311 GGACAGATGTGCCCACTGA 59.321 57.895 0.00 0.00 35.85 3.41
647 979 2.745100 GGAAACTTCCGGCGGGAC 60.745 66.667 27.98 4.80 43.74 4.46
700 1032 3.883744 GACCAGTGGCAGTGGACCG 62.884 68.421 40.59 19.37 41.28 4.79
746 1078 4.641645 TGCACGGCAAGTCAGGGG 62.642 66.667 0.00 0.00 34.76 4.79
750 1083 2.974148 CTGCTGCACGGCAAGTCA 60.974 61.111 5.53 0.00 41.94 3.41
770 1103 4.484872 GGAAGGTACGGGCCCTGC 62.485 72.222 22.43 10.49 30.99 4.85
775 1108 4.525949 GCGGAGGAAGGTACGGGC 62.526 72.222 0.00 0.00 0.00 6.13
805 1138 2.847715 GGGTGGGACGGGATAGGG 60.848 72.222 0.00 0.00 0.00 3.53
884 1217 4.468689 CGTCTCTTTCCCCGCCCC 62.469 72.222 0.00 0.00 0.00 5.80
1262 1629 0.670546 AGTCACGGGAACTGCAATCG 60.671 55.000 0.00 0.00 39.14 3.34
1279 1646 3.084786 GCCTTGATCTAACCAAGCAAGT 58.915 45.455 0.00 0.00 39.60 3.16
1281 1648 2.083774 CGCCTTGATCTAACCAAGCAA 58.916 47.619 0.00 0.00 39.60 3.91
1284 1651 3.181520 CGAAACGCCTTGATCTAACCAAG 60.182 47.826 0.00 0.00 40.37 3.61
1296 1663 2.663852 CGACACCCGAAACGCCTT 60.664 61.111 0.00 0.00 41.76 4.35
1298 1665 3.408851 GACGACACCCGAAACGCC 61.409 66.667 0.00 0.00 41.76 5.68
1317 1684 4.096382 CCTAATCCTCCCACAAATTTCACG 59.904 45.833 0.00 0.00 0.00 4.35
1320 1687 4.610333 ACCCTAATCCTCCCACAAATTTC 58.390 43.478 0.00 0.00 0.00 2.17
1330 1697 4.141551 ACGAATTGGTAACCCTAATCCTCC 60.142 45.833 0.00 0.00 0.00 4.30
1358 1725 0.313987 ATCAACCGATGATCGCGCTA 59.686 50.000 9.74 0.00 45.91 4.26
1359 1726 1.068083 ATCAACCGATGATCGCGCT 59.932 52.632 9.74 0.00 45.91 5.92
1370 1737 3.440173 AGGCTAATCAACACAATCAACCG 59.560 43.478 0.00 0.00 0.00 4.44
1371 1738 4.380867 CCAGGCTAATCAACACAATCAACC 60.381 45.833 0.00 0.00 0.00 3.77
1373 1740 3.193267 GCCAGGCTAATCAACACAATCAA 59.807 43.478 3.29 0.00 0.00 2.57
1381 1760 3.251972 GCTATCAAGCCAGGCTAATCAAC 59.748 47.826 16.56 0.00 43.40 3.18
1383 1762 3.131709 GCTATCAAGCCAGGCTAATCA 57.868 47.619 16.56 0.00 43.40 2.57
1407 1786 2.480419 GGAATGATCGCTACCCATTTCG 59.520 50.000 0.00 0.00 31.40 3.46
1433 1812 1.599797 GGGCCCATATCGTTTCCCG 60.600 63.158 19.95 0.00 38.13 5.14
1484 1863 6.786207 TCTATGAGCTATCCATATCGTTTCG 58.214 40.000 0.00 0.00 0.00 3.46
1538 1928 5.089970 AGAAAATTAATTGGGCAGGAAGC 57.910 39.130 0.39 0.00 44.65 3.86
1547 1937 6.201806 TCCAAACGCACAAGAAAATTAATTGG 59.798 34.615 0.39 0.00 35.04 3.16
1559 1949 2.126467 CCAACATTCCAAACGCACAAG 58.874 47.619 0.00 0.00 0.00 3.16
1564 1954 1.268352 TGTAGCCAACATTCCAAACGC 59.732 47.619 0.00 0.00 31.43 4.84
1588 1978 3.689161 TCGATGGCAACCTACAAATTCTG 59.311 43.478 0.00 0.00 0.00 3.02
1599 1989 4.149922 GCTTTAACTTTTTCGATGGCAACC 59.850 41.667 0.00 0.00 0.00 3.77
1637 2027 2.622546 AGTCGAGTTTCGCTTCTCTC 57.377 50.000 0.00 0.00 40.21 3.20
1638 2028 4.500603 TTTAGTCGAGTTTCGCTTCTCT 57.499 40.909 0.00 0.00 40.21 3.10
1644 2034 6.028987 AGAGTAAGATTTAGTCGAGTTTCGC 58.971 40.000 0.00 0.00 40.21 4.70
1651 2041 5.426504 ACGGAGAGAGTAAGATTTAGTCGA 58.573 41.667 0.00 0.00 0.00 4.20
1652 2042 5.277442 GGACGGAGAGAGTAAGATTTAGTCG 60.277 48.000 0.00 0.00 0.00 4.18
1667 2057 2.165845 ACAAGTATTTCCGGACGGAGAG 59.834 50.000 13.64 0.20 46.06 3.20
1669 2059 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1670 2060 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1671 2061 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1672 2062 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1673 2063 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1674 2064 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
1675 2065 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
1676 2066 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
1682 2072 9.527157 TCCTTTTATCCATTTTGATGACAAGTA 57.473 29.630 0.00 0.00 37.32 2.24
1683 2073 8.421249 TCCTTTTATCCATTTTGATGACAAGT 57.579 30.769 0.00 0.00 37.32 3.16
1684 2074 8.742777 TCTCCTTTTATCCATTTTGATGACAAG 58.257 33.333 0.00 0.00 37.32 3.16
1685 2075 8.648698 TCTCCTTTTATCCATTTTGATGACAA 57.351 30.769 0.00 0.00 0.00 3.18
1686 2076 8.689061 CATCTCCTTTTATCCATTTTGATGACA 58.311 33.333 0.00 0.00 32.05 3.58
1687 2077 8.689972 ACATCTCCTTTTATCCATTTTGATGAC 58.310 33.333 0.00 0.00 33.85 3.06
1688 2078 8.827832 ACATCTCCTTTTATCCATTTTGATGA 57.172 30.769 0.00 0.00 33.85 2.92
1696 2086 8.744652 CGTCTAGATACATCTCCTTTTATCCAT 58.255 37.037 0.00 0.00 38.32 3.41
1697 2087 7.724506 ACGTCTAGATACATCTCCTTTTATCCA 59.275 37.037 0.00 0.00 38.32 3.41
1698 2088 8.113173 ACGTCTAGATACATCTCCTTTTATCC 57.887 38.462 0.00 0.00 38.32 2.59
1705 2095 9.796180 ACTAAAATACGTCTAGATACATCTCCT 57.204 33.333 0.00 0.00 38.32 3.69
1715 2105 9.339850 AGCATCTAGAACTAAAATACGTCTAGA 57.660 33.333 10.27 10.27 38.94 2.43
1716 2106 9.953697 AAGCATCTAGAACTAAAATACGTCTAG 57.046 33.333 0.00 0.00 0.00 2.43
1750 2140 9.045223 CGAGAATACTTGTCATCAAAATGGATA 57.955 33.333 0.00 0.00 33.42 2.59
1751 2141 7.012704 CCGAGAATACTTGTCATCAAAATGGAT 59.987 37.037 0.00 0.00 33.42 3.41
1752 2142 6.316140 CCGAGAATACTTGTCATCAAAATGGA 59.684 38.462 0.00 0.00 33.42 3.41
1753 2143 6.316140 TCCGAGAATACTTGTCATCAAAATGG 59.684 38.462 0.00 0.00 33.42 3.16
1754 2144 7.182761 GTCCGAGAATACTTGTCATCAAAATG 58.817 38.462 0.00 0.00 32.87 2.32
1755 2145 6.036083 CGTCCGAGAATACTTGTCATCAAAAT 59.964 38.462 0.00 0.00 32.87 1.82
1756 2146 5.347635 CGTCCGAGAATACTTGTCATCAAAA 59.652 40.000 0.00 0.00 32.87 2.44
1757 2147 4.862574 CGTCCGAGAATACTTGTCATCAAA 59.137 41.667 0.00 0.00 32.87 2.69
1758 2148 4.421058 CGTCCGAGAATACTTGTCATCAA 58.579 43.478 0.00 0.00 0.00 2.57
1759 2149 3.181490 CCGTCCGAGAATACTTGTCATCA 60.181 47.826 0.00 0.00 0.00 3.07
1760 2150 3.066342 TCCGTCCGAGAATACTTGTCATC 59.934 47.826 0.00 0.00 0.00 2.92
1761 2151 3.021695 TCCGTCCGAGAATACTTGTCAT 58.978 45.455 0.00 0.00 0.00 3.06
1762 2152 2.422479 CTCCGTCCGAGAATACTTGTCA 59.578 50.000 0.00 0.00 41.63 3.58
1763 2153 2.223525 CCTCCGTCCGAGAATACTTGTC 60.224 54.545 0.00 0.00 41.63 3.18
1764 2154 1.749634 CCTCCGTCCGAGAATACTTGT 59.250 52.381 0.00 0.00 41.63 3.16
1765 2155 1.067212 CCCTCCGTCCGAGAATACTTG 59.933 57.143 0.00 0.00 41.63 3.16
1766 2156 1.064166 TCCCTCCGTCCGAGAATACTT 60.064 52.381 0.00 0.00 41.63 2.24
1767 2157 0.549950 TCCCTCCGTCCGAGAATACT 59.450 55.000 0.00 0.00 41.63 2.12
1768 2158 0.953003 CTCCCTCCGTCCGAGAATAC 59.047 60.000 0.00 0.00 41.63 1.89
1769 2159 0.549950 ACTCCCTCCGTCCGAGAATA 59.450 55.000 0.00 0.00 41.63 1.75
1770 2160 0.549950 TACTCCCTCCGTCCGAGAAT 59.450 55.000 0.00 0.00 41.63 2.40
1771 2161 0.393537 GTACTCCCTCCGTCCGAGAA 60.394 60.000 0.00 0.00 41.63 2.87
1772 2162 1.222936 GTACTCCCTCCGTCCGAGA 59.777 63.158 0.00 0.00 41.63 4.04
1773 2163 0.467384 TAGTACTCCCTCCGTCCGAG 59.533 60.000 0.00 0.00 38.46 4.63
1774 2164 0.467384 CTAGTACTCCCTCCGTCCGA 59.533 60.000 0.00 0.00 0.00 4.55
1775 2165 0.179936 ACTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
1776 2166 2.433662 AACTAGTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
1777 2167 4.702131 TGTTTAACTAGTACTCCCTCCGTC 59.298 45.833 0.00 0.00 0.00 4.79
1778 2168 4.666512 TGTTTAACTAGTACTCCCTCCGT 58.333 43.478 0.00 0.00 0.00 4.69
1779 2169 5.649782 TTGTTTAACTAGTACTCCCTCCG 57.350 43.478 0.00 0.00 0.00 4.63
1780 2170 5.873712 GCTTTGTTTAACTAGTACTCCCTCC 59.126 44.000 0.00 0.00 0.00 4.30
1781 2171 6.461640 TGCTTTGTTTAACTAGTACTCCCTC 58.538 40.000 0.00 0.00 0.00 4.30
1782 2172 6.429521 TGCTTTGTTTAACTAGTACTCCCT 57.570 37.500 0.00 0.00 0.00 4.20
1783 2173 7.527457 CAATGCTTTGTTTAACTAGTACTCCC 58.473 38.462 0.00 0.00 0.00 4.30
1784 2174 7.021790 GCAATGCTTTGTTTAACTAGTACTCC 58.978 38.462 13.29 0.00 35.17 3.85
1785 2175 7.534239 GTGCAATGCTTTGTTTAACTAGTACTC 59.466 37.037 6.82 0.00 35.17 2.59
1786 2176 7.360361 GTGCAATGCTTTGTTTAACTAGTACT 58.640 34.615 6.82 0.00 35.17 2.73
1787 2177 6.581166 GGTGCAATGCTTTGTTTAACTAGTAC 59.419 38.462 6.82 0.00 35.17 2.73
1788 2178 6.488683 AGGTGCAATGCTTTGTTTAACTAGTA 59.511 34.615 6.82 0.00 35.17 1.82
1789 2179 5.301805 AGGTGCAATGCTTTGTTTAACTAGT 59.698 36.000 6.82 0.00 35.17 2.57
1790 2180 5.772521 AGGTGCAATGCTTTGTTTAACTAG 58.227 37.500 6.82 0.00 35.17 2.57
1791 2181 5.782893 AGGTGCAATGCTTTGTTTAACTA 57.217 34.783 6.82 0.00 35.17 2.24
1867 2257 3.879998 TGGAACAAGCAGTTGTAGTTCA 58.120 40.909 0.00 0.00 46.68 3.18
1868 2258 4.757149 AGATGGAACAAGCAGTTGTAGTTC 59.243 41.667 0.00 0.00 46.68 3.01
1869 2259 4.718961 AGATGGAACAAGCAGTTGTAGTT 58.281 39.130 0.00 0.00 46.68 2.24
1870 2260 4.040952 AGAGATGGAACAAGCAGTTGTAGT 59.959 41.667 0.00 0.00 46.68 2.73
1871 2261 4.573900 AGAGATGGAACAAGCAGTTGTAG 58.426 43.478 0.00 0.00 46.68 2.74
1894 2284 5.227569 TGGCAGTTTCTTCAGTATCTCAA 57.772 39.130 0.00 0.00 0.00 3.02
1897 2287 4.397417 GCAATGGCAGTTTCTTCAGTATCT 59.603 41.667 0.00 0.00 40.72 1.98
1917 2311 2.291209 TGGCCAGAAGATTGAAGCAA 57.709 45.000 0.00 0.00 0.00 3.91
1944 2338 8.723942 AGTTTCATCTACACATATCTCAAACC 57.276 34.615 0.00 0.00 0.00 3.27
1977 2379 4.859326 GCAGCATGAACCAGTTTGGTACA 61.859 47.826 0.00 0.00 45.54 2.90
1997 2399 1.032014 GGCAAGAAGACCAAGTTGCA 58.968 50.000 8.07 0.00 45.78 4.08
2127 2529 5.406175 TGAAAATGCACATGAAAGCTAAAGC 59.594 36.000 0.00 0.00 42.49 3.51
2224 2628 8.285394 CCAATGTTGCTATTGTCTATGTATGAC 58.715 37.037 0.00 0.00 36.54 3.06
2347 2751 0.892063 AAACGCCTCTCAGTCTCTCC 59.108 55.000 0.00 0.00 0.00 3.71
2362 2766 5.392165 GGAGGTAGATGATCCGATAGAAACG 60.392 48.000 0.00 0.00 39.76 3.60
2473 2877 2.444388 AGATGATGAGCCAGGCCAATTA 59.556 45.455 8.22 0.00 0.00 1.40
2483 2887 0.534652 GGCTGGACAGATGATGAGCC 60.535 60.000 3.00 0.00 39.31 4.70
2687 3091 1.680735 CAGCCTTATCAGCTCGTCTCT 59.319 52.381 0.00 0.00 38.95 3.10
2792 3196 4.414956 TCATCAGGGCCGGGACCT 62.415 66.667 18.29 18.29 45.50 3.85
2804 3208 4.865629 ACCGAGGGTCTGTCATCA 57.134 55.556 0.00 0.00 0.00 3.07
2865 3269 9.162764 GTGGATTACAACAACACATCTTACTAT 57.837 33.333 0.00 0.00 32.58 2.12
3103 3507 2.232452 TCTCAGTCAACCAAGCTCTAGC 59.768 50.000 0.00 0.00 42.49 3.42
3157 3644 4.706476 TGGAGAAATAGGGCACTCAAAATG 59.294 41.667 0.00 0.00 0.00 2.32
3159 3646 4.380843 TGGAGAAATAGGGCACTCAAAA 57.619 40.909 0.00 0.00 0.00 2.44
3162 3649 4.079253 GTTTTGGAGAAATAGGGCACTCA 58.921 43.478 0.00 0.00 0.00 3.41
3209 3738 3.030291 ACTCATGAGTTGCCACCAAAAA 58.970 40.909 22.89 0.00 38.83 1.94
3210 3739 2.361757 CACTCATGAGTTGCCACCAAAA 59.638 45.455 25.84 0.00 40.20 2.44
3211 3740 1.955778 CACTCATGAGTTGCCACCAAA 59.044 47.619 25.84 0.00 40.20 3.28
3212 3741 1.608055 CACTCATGAGTTGCCACCAA 58.392 50.000 25.84 0.00 40.20 3.67
3213 3742 0.250858 CCACTCATGAGTTGCCACCA 60.251 55.000 25.84 0.00 40.20 4.17
3214 3743 0.962356 CCCACTCATGAGTTGCCACC 60.962 60.000 25.84 0.00 40.20 4.61
3215 3744 0.036732 TCCCACTCATGAGTTGCCAC 59.963 55.000 25.84 0.00 40.20 5.01
3216 3745 0.036732 GTCCCACTCATGAGTTGCCA 59.963 55.000 25.84 8.93 40.20 4.92
3217 3746 0.678048 GGTCCCACTCATGAGTTGCC 60.678 60.000 25.84 19.23 40.20 4.52
3218 3747 0.678048 GGGTCCCACTCATGAGTTGC 60.678 60.000 25.84 14.74 40.20 4.17
3219 3748 0.692476 TGGGTCCCACTCATGAGTTG 59.308 55.000 25.84 21.52 40.20 3.16
3220 3749 0.987294 CTGGGTCCCACTCATGAGTT 59.013 55.000 25.84 8.73 40.20 3.01
3221 3750 1.557269 GCTGGGTCCCACTCATGAGT 61.557 60.000 22.89 22.89 43.61 3.41
3222 3751 1.222936 GCTGGGTCCCACTCATGAG 59.777 63.158 21.37 21.37 0.00 2.90
3223 3752 1.229625 AGCTGGGTCCCACTCATGA 60.230 57.895 6.47 0.00 0.00 3.07
3224 3753 1.077930 CAGCTGGGTCCCACTCATG 60.078 63.158 6.47 0.00 0.00 3.07
3225 3754 2.304056 CCAGCTGGGTCCCACTCAT 61.304 63.158 26.14 0.00 0.00 2.90
3226 3755 2.930019 CCAGCTGGGTCCCACTCA 60.930 66.667 26.14 0.00 0.00 3.41
3227 3756 4.416738 GCCAGCTGGGTCCCACTC 62.417 72.222 33.46 10.92 39.65 3.51
3229 3758 4.729918 CTGCCAGCTGGGTCCCAC 62.730 72.222 33.46 16.33 39.65 4.61
3231 3760 4.729918 CACTGCCAGCTGGGTCCC 62.730 72.222 33.46 17.46 39.65 4.46
3232 3761 4.729918 CCACTGCCAGCTGGGTCC 62.730 72.222 33.46 17.84 39.65 4.46
3266 3795 8.930760 GTGGCAATTCAGATACAGAAGATATAC 58.069 37.037 0.00 0.00 0.00 1.47
3287 3816 2.167037 AAGGCCTTAAGGGGTGGCA 61.167 57.895 18.87 0.00 35.18 4.92
3369 3898 1.406887 CGGGGGTTGGATGACAAGTAG 60.407 57.143 0.00 0.00 40.38 2.57
3379 3908 2.059345 GAGGAACAACGGGGGTTGGA 62.059 60.000 11.21 0.00 38.55 3.53
3452 3983 1.275010 TCTGACCTGATGCGCTTACAA 59.725 47.619 9.73 0.00 0.00 2.41
3531 4104 1.394151 CCACCCCTCCCTTCTCTCT 59.606 63.158 0.00 0.00 0.00 3.10
3611 4206 4.936248 CTCTCTCTCTCGCGCGCG 62.936 72.222 44.84 44.84 41.35 6.86
3612 4207 3.506312 CTCTCTCTCTCTCGCGCGC 62.506 68.421 27.95 23.91 0.00 6.86
3640 4242 2.895426 TTCGAGCTCTCTCTCCCCGG 62.895 65.000 12.85 0.00 37.19 5.73
3674 4292 2.401766 ACGACGGACGAAGCGGTAT 61.402 57.895 6.90 0.00 45.77 2.73
3680 4298 2.178521 CTCCCACGACGGACGAAG 59.821 66.667 6.90 0.00 45.77 3.79
3709 4327 1.683418 ATCCTCGTCCCTTTACCCGC 61.683 60.000 0.00 0.00 0.00 6.13
3736 4354 0.775542 AAACCAGGTGGAACTACCCC 59.224 55.000 2.10 0.00 41.83 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.