Multiple sequence alignment - TraesCS4A01G049200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G049200 chr4A 100.000 6538 0 0 1 6538 40244545 40251082 0.000000e+00 12074.0
1 TraesCS4A01G049200 chr4B 92.056 3663 183 45 486 4088 520404425 520400811 0.000000e+00 5053.0
2 TraesCS4A01G049200 chr4B 92.430 2325 104 22 4246 6538 520400815 520398531 0.000000e+00 3253.0
3 TraesCS4A01G049200 chr4B 86.279 430 28 14 27 453 520404922 520404521 7.780000e-119 438.0
4 TraesCS4A01G049200 chr4B 94.915 177 6 3 4075 4248 71600800 71600624 2.320000e-69 274.0
5 TraesCS4A01G049200 chr4D 93.074 2339 99 21 4246 6538 424470386 424468065 0.000000e+00 3363.0
6 TraesCS4A01G049200 chr4D 91.692 2299 129 35 1839 4088 424472667 424470382 0.000000e+00 3131.0
7 TraesCS4A01G049200 chr4D 91.800 939 44 22 937 1847 424473621 424472688 0.000000e+00 1277.0
8 TraesCS4A01G049200 chr4D 88.267 375 14 9 532 896 424474199 424473845 7.840000e-114 422.0
9 TraesCS4A01G049200 chr4D 86.040 351 27 7 27 371 424477012 424476678 2.240000e-94 357.0
10 TraesCS4A01G049200 chr4D 84.783 92 12 2 3124 3215 457585576 457585665 2.510000e-14 91.6
11 TraesCS4A01G049200 chr4D 100.000 34 0 0 445 478 424476605 424476572 5.470000e-06 63.9
12 TraesCS4A01G049200 chr1A 79.741 1081 130 54 2694 3698 395197351 395196284 0.000000e+00 701.0
13 TraesCS4A01G049200 chr2A 79.352 1080 132 56 2693 3696 473412705 473413769 0.000000e+00 675.0
14 TraesCS4A01G049200 chr2A 93.370 181 11 1 4082 4261 124381847 124382027 3.890000e-67 267.0
15 TraesCS4A01G049200 chr2D 96.450 169 5 1 4084 4251 161906851 161907019 1.800000e-70 278.0
16 TraesCS4A01G049200 chr2D 92.593 189 9 5 4085 4268 196347492 196347304 3.890000e-67 267.0
17 TraesCS4A01G049200 chr2D 87.500 88 10 1 3128 3215 427340704 427340790 4.170000e-17 100.0
18 TraesCS4A01G049200 chr2D 86.364 88 11 1 3128 3215 403343436 403343522 1.940000e-15 95.3
19 TraesCS4A01G049200 chr2B 87.552 241 28 2 2682 2922 154933540 154933302 1.800000e-70 278.0
20 TraesCS4A01G049200 chr5B 94.444 180 8 2 4085 4262 607474812 607474633 6.460000e-70 276.0
21 TraesCS4A01G049200 chr5B 94.915 177 6 3 4074 4249 427931193 427931367 2.320000e-69 274.0
22 TraesCS4A01G049200 chr5A 95.402 174 6 2 4076 4248 290391869 290391697 6.460000e-70 276.0
23 TraesCS4A01G049200 chr5A 95.906 171 6 1 4081 4250 429513461 429513631 6.460000e-70 276.0
24 TraesCS4A01G049200 chr5A 74.468 188 44 3 3512 3698 402964375 402964559 1.950000e-10 78.7
25 TraesCS4A01G049200 chr7D 94.444 180 7 3 4082 4259 517575232 517575410 2.320000e-69 274.0
26 TraesCS4A01G049200 chr6A 88.393 224 26 0 2689 2912 479887549 479887326 3.000000e-68 270.0
27 TraesCS4A01G049200 chr6A 85.593 236 31 2 2689 2922 445970173 445970407 1.820000e-60 244.0
28 TraesCS4A01G049200 chr3D 85.425 247 32 4 2689 2935 253508228 253507986 3.030000e-63 254.0
29 TraesCS4A01G049200 chr3A 85.020 247 33 4 2689 2935 336593985 336593743 1.410000e-61 248.0
30 TraesCS4A01G049200 chr5D 84.462 251 26 6 2693 2943 230539786 230540023 1.100000e-57 235.0
31 TraesCS4A01G049200 chr6D 89.011 91 9 1 3128 3218 96704966 96704877 1.930000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G049200 chr4A 40244545 40251082 6537 False 12074.000000 12074 100.000000 1 6538 1 chr4A.!!$F1 6537
1 TraesCS4A01G049200 chr4B 520398531 520404922 6391 True 2914.666667 5053 90.255000 27 6538 3 chr4B.!!$R2 6511
2 TraesCS4A01G049200 chr4D 424468065 424477012 8947 True 1435.650000 3363 91.812167 27 6538 6 chr4D.!!$R1 6511
3 TraesCS4A01G049200 chr1A 395196284 395197351 1067 True 701.000000 701 79.741000 2694 3698 1 chr1A.!!$R1 1004
4 TraesCS4A01G049200 chr2A 473412705 473413769 1064 False 675.000000 675 79.352000 2693 3696 1 chr2A.!!$F2 1003

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 2949 0.108472 GGCAGGAAAAATGCTGGAGC 60.108 55.0 0.00 0.0 43.35 4.70 F
759 3138 0.108585 CGGAGGAGGAGGAGAGAGAG 59.891 65.0 0.00 0.0 0.00 3.20 F
1292 3859 0.321653 CAGCGCCTTCTGGTAACCTT 60.322 55.0 2.29 0.0 35.27 3.50 F
1316 3883 0.623324 CCCAGTCCCCATCCCACTAA 60.623 60.0 0.00 0.0 0.00 2.24 F
3126 5839 0.742505 CCGACGATGGTGCCTTAGTA 59.257 55.0 0.00 0.0 0.00 1.82 F
3834 6584 0.254462 TGTGTGTGTGCTTCTGGGAA 59.746 50.0 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 4422 2.693591 TGATACACAGGCAGTAGTAGGC 59.306 50.000 0.00 0.0 0.00 3.93 R
2691 5323 1.550976 GTTCCCAAACCAAACACACCA 59.449 47.619 0.00 0.0 0.00 4.17 R
3056 5765 0.670162 GGTGTGCAGTGACATTTGCT 59.330 50.000 13.79 0.0 40.87 3.91 R
3157 5870 1.606531 GGCAGCCCTCTCACTCATT 59.393 57.895 0.00 0.0 0.00 2.57 R
4496 7259 0.178992 TGCTTGCTGTAAACTGGGCT 60.179 50.000 0.00 0.0 0.00 5.19 R
5683 8484 0.324614 TGGATCAGTCGGCAACACAT 59.675 50.000 0.00 0.0 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.859495 ACTAGTATCGGGTACTACTACCAC 58.141 45.833 4.03 0.00 44.18 4.16
24 25 4.778213 AGTATCGGGTACTACTACCACA 57.222 45.455 0.00 0.00 44.18 4.17
25 26 4.455606 AGTATCGGGTACTACTACCACAC 58.544 47.826 0.00 0.00 44.18 3.82
60 61 2.290641 CACAAAGTAGCCTTGTGTGGTC 59.709 50.000 7.39 0.00 36.78 4.02
161 163 0.179189 GCACTGATTTTTCCTCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
162 164 1.156736 CACTGATTTTTCCTCCGCGT 58.843 50.000 4.92 0.00 0.00 6.01
165 167 1.060465 GATTTTTCCTCCGCGTCGC 59.940 57.895 7.29 7.29 0.00 5.19
298 309 4.980805 AACGCGCGTGGTGTGGAT 62.981 61.111 38.44 15.84 39.86 3.41
303 314 3.434319 GCGTGGTGTGGATGGCAG 61.434 66.667 0.00 0.00 0.00 4.85
335 346 3.070576 GCTTCCACCACCCATGCC 61.071 66.667 0.00 0.00 0.00 4.40
371 386 3.703127 GTTCGTTCCCTCCCGGCT 61.703 66.667 0.00 0.00 0.00 5.52
372 387 3.387947 TTCGTTCCCTCCCGGCTC 61.388 66.667 0.00 0.00 0.00 4.70
418 433 1.734117 ACGCGGCAAAGGTACGTAC 60.734 57.895 17.56 17.56 34.79 3.67
419 434 1.444895 CGCGGCAAAGGTACGTACT 60.445 57.895 24.07 8.57 0.00 2.73
420 435 0.179166 CGCGGCAAAGGTACGTACTA 60.179 55.000 24.07 0.00 0.00 1.82
478 528 3.872728 CGTGATCTCCGCCGTCGA 61.873 66.667 0.00 0.00 38.10 4.20
507 601 1.161563 TCAAACCAAACGGCTCGTCC 61.162 55.000 0.69 0.00 39.99 4.79
525 619 1.377725 CGTCTGCCCCTTGCTTGAT 60.378 57.895 0.00 0.00 42.00 2.57
528 2897 2.681064 TGCCCCTTGCTTGATGCC 60.681 61.111 0.00 0.00 42.00 4.40
580 2949 0.108472 GGCAGGAAAAATGCTGGAGC 60.108 55.000 0.00 0.00 43.35 4.70
683 3053 1.799258 AAGCAAGCAAAGTCAGCCCG 61.799 55.000 0.00 0.00 0.00 6.13
754 3133 4.507916 CCGCGGAGGAGGAGGAGA 62.508 72.222 24.07 0.00 45.00 3.71
755 3134 2.904866 CGCGGAGGAGGAGGAGAG 60.905 72.222 0.00 0.00 0.00 3.20
756 3135 2.598467 GCGGAGGAGGAGGAGAGA 59.402 66.667 0.00 0.00 0.00 3.10
757 3136 1.528309 GCGGAGGAGGAGGAGAGAG 60.528 68.421 0.00 0.00 0.00 3.20
758 3137 1.990160 GCGGAGGAGGAGGAGAGAGA 61.990 65.000 0.00 0.00 0.00 3.10
759 3138 0.108585 CGGAGGAGGAGGAGAGAGAG 59.891 65.000 0.00 0.00 0.00 3.20
760 3139 1.518367 GGAGGAGGAGGAGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
761 3140 1.421646 GGAGGAGGAGGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
762 3141 2.408565 GAGGAGGAGGAGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
763 3142 2.370189 GAGGAGGAGGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
764 3143 2.022035 AGGAGGAGGAGAGAGAGAGAGA 60.022 54.545 0.00 0.00 0.00 3.10
765 3144 2.370189 GGAGGAGGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
766 3145 3.309296 GAGGAGGAGAGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
767 3146 3.312890 AGGAGGAGAGAGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
768 3147 3.051803 AGGAGGAGAGAGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
848 3229 4.697756 CTGCCGTCGCCTTTCCCA 62.698 66.667 0.00 0.00 0.00 4.37
875 3256 2.075426 AAAGCAAGGCAGACCAACGC 62.075 55.000 0.00 0.00 39.06 4.84
917 3298 3.711782 CCTTCCCCTCCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
919 3300 2.879490 TTCCCCTCCCCTCCCTGA 60.879 66.667 0.00 0.00 0.00 3.86
995 3561 2.041115 GCGAGGCCAAACCCTTCTC 61.041 63.158 5.01 0.00 40.58 2.87
997 3563 1.000771 GAGGCCAAACCCTTCTCCC 60.001 63.158 5.01 0.00 40.58 4.30
1292 3859 0.321653 CAGCGCCTTCTGGTAACCTT 60.322 55.000 2.29 0.00 35.27 3.50
1312 3879 3.632049 TCCCCAGTCCCCATCCCA 61.632 66.667 0.00 0.00 0.00 4.37
1314 3881 2.286425 CCCAGTCCCCATCCCACT 60.286 66.667 0.00 0.00 0.00 4.00
1315 3882 1.004230 CCCAGTCCCCATCCCACTA 59.996 63.158 0.00 0.00 0.00 2.74
1316 3883 0.623324 CCCAGTCCCCATCCCACTAA 60.623 60.000 0.00 0.00 0.00 2.24
1395 3966 4.925068 AGCATCAATCGCTTTACAATTCC 58.075 39.130 0.00 0.00 35.82 3.01
1463 4034 2.978010 CCGGTGGGTCAAGTGTGC 60.978 66.667 0.00 0.00 0.00 4.57
1503 4074 2.038269 CCGTGGGGAATTCGGTGTG 61.038 63.158 0.00 0.00 39.51 3.82
1504 4075 1.302192 CGTGGGGAATTCGGTGTGT 60.302 57.895 0.00 0.00 0.00 3.72
1508 4079 1.165270 GGGGAATTCGGTGTGTTCAG 58.835 55.000 0.00 0.00 0.00 3.02
1520 4091 3.304458 GGTGTGTTCAGGAACGGAAAATC 60.304 47.826 7.58 0.00 45.20 2.17
1526 4097 3.873910 TCAGGAACGGAAAATCTGATCC 58.126 45.455 7.25 7.25 42.95 3.36
1540 4116 7.526142 AAATCTGATCCGCTATGTACTCTAA 57.474 36.000 0.00 0.00 0.00 2.10
1541 4117 7.710676 AATCTGATCCGCTATGTACTCTAAT 57.289 36.000 0.00 0.00 0.00 1.73
1610 4195 5.435686 AGGTTGGAGTGATGCTTGTAATA 57.564 39.130 0.00 0.00 0.00 0.98
1614 4199 6.072175 GGTTGGAGTGATGCTTGTAATACAAA 60.072 38.462 7.30 0.00 37.69 2.83
1622 4207 7.485913 GTGATGCTTGTAATACAAATTGTGGAG 59.514 37.037 9.15 0.00 37.69 3.86
1637 4222 3.599343 TGTGGAGAACATGTGTCTATGC 58.401 45.455 0.00 0.00 32.36 3.14
1639 4224 4.466015 TGTGGAGAACATGTGTCTATGCTA 59.534 41.667 0.00 0.00 32.36 3.49
1641 4226 5.874810 GTGGAGAACATGTGTCTATGCTAAA 59.125 40.000 0.00 0.00 0.00 1.85
1651 4242 3.455910 TGTCTATGCTAAACCCAGCTCAT 59.544 43.478 0.00 0.00 42.30 2.90
1717 4308 5.202004 ACCTCAGTACACTATACCTTCTGG 58.798 45.833 0.00 0.00 39.83 3.86
1830 4422 3.070734 AGGCATCAGCTTATCTGTAGTGG 59.929 47.826 0.00 0.00 43.32 4.00
1853 4475 4.202264 GCCTACTACTGCCTGTGTATCATT 60.202 45.833 0.00 0.00 0.00 2.57
1862 4484 7.887381 ACTGCCTGTGTATCATTATCTAGTAC 58.113 38.462 0.00 0.00 0.00 2.73
1899 4521 6.806739 GGCAGCTAAAAACAAATTCTAACGAT 59.193 34.615 0.00 0.00 0.00 3.73
1983 4606 4.081406 TGTTCTGGCATGCATAGAAAGTT 58.919 39.130 27.70 0.00 32.76 2.66
2215 4838 4.497340 GCTGGATCGAAGTGTCAAAAACAA 60.497 41.667 0.00 0.00 40.31 2.83
2245 4868 3.062639 CGCGCAGTACTTGAATTCTGAAT 59.937 43.478 8.75 0.00 0.00 2.57
2419 5043 9.077885 ACAAACTGGTGAACTACAATATGAAAT 57.922 29.630 0.00 0.00 0.00 2.17
2565 5197 8.552296 ACATGTCCTTTTCTACTTATCCTCAAT 58.448 33.333 0.00 0.00 0.00 2.57
2622 5254 1.679977 CCATGGGCAGAACAGTGGG 60.680 63.158 2.85 0.00 0.00 4.61
2722 5354 2.018515 GTTTGGGAACGAAGTGGAACA 58.981 47.619 0.00 0.00 45.00 3.18
2920 5552 8.956426 AGAAAACTAAACTGAACTGAATGTTGA 58.044 29.630 0.00 0.00 39.30 3.18
2921 5553 9.567848 GAAAACTAAACTGAACTGAATGTTGAA 57.432 29.630 0.00 0.00 39.30 2.69
3056 5765 2.054021 TGATCTGGAGAAACACCCACA 58.946 47.619 0.00 0.00 0.00 4.17
3117 5826 2.291043 AAAGCTCCCCGACGATGGT 61.291 57.895 0.00 0.00 0.00 3.55
3125 5838 1.515954 CCGACGATGGTGCCTTAGT 59.484 57.895 0.00 0.00 0.00 2.24
3126 5839 0.742505 CCGACGATGGTGCCTTAGTA 59.257 55.000 0.00 0.00 0.00 1.82
3148 5861 4.517934 CCAGCCTCCATGCCTGGG 62.518 72.222 8.28 0.00 43.34 4.45
3157 5870 1.383799 CATGCCTGGGTGGAAGGAA 59.616 57.895 0.00 0.00 36.91 3.36
3159 5872 0.712380 ATGCCTGGGTGGAAGGAAAT 59.288 50.000 0.00 0.00 36.91 2.17
3205 5918 1.134877 TGCTCGGCTGAAGAAGATGAG 60.135 52.381 0.00 0.00 33.85 2.90
3215 5928 2.548464 AGAAGATGAGTGAGAGGGCT 57.452 50.000 0.00 0.00 0.00 5.19
3241 5954 4.631740 TCCCTGCTCGGTGGGACA 62.632 66.667 0.00 0.00 46.69 4.02
3304 6017 3.058160 GCACCAGCGCAAGGATGT 61.058 61.111 23.50 2.05 38.28 3.06
3399 6112 3.402681 CAGCGGAGGGGGACATGT 61.403 66.667 0.00 0.00 0.00 3.21
3410 6123 3.978193 GACATGTGGGGGTGGCCA 61.978 66.667 1.15 0.00 0.00 5.36
3482 6225 2.367512 GGGGAGGGAGATGTGGCT 60.368 66.667 0.00 0.00 0.00 4.75
3483 6226 2.003548 GGGGAGGGAGATGTGGCTT 61.004 63.158 0.00 0.00 0.00 4.35
3503 6247 2.647158 GGGGAGGAAAGACGAGCGT 61.647 63.158 0.00 0.00 0.00 5.07
3536 6286 1.007734 GTTCTGTGTCGTCCGCTCA 60.008 57.895 0.00 0.00 0.00 4.26
3597 6347 2.609825 CATTCTCTGGAATCGGCGG 58.390 57.895 7.21 0.00 39.87 6.13
3648 6398 4.115199 AATGGGCTCTGGGGACGC 62.115 66.667 0.00 0.00 0.00 5.19
3669 6419 3.130340 GCAACCGACCCATTACATTTCAT 59.870 43.478 0.00 0.00 0.00 2.57
3759 6509 2.172717 GGGACTAGCAGGCATTTTCCTA 59.827 50.000 0.00 0.00 33.95 2.94
3825 6575 2.770589 GGGGTGTGTGTGTGTGTGC 61.771 63.158 0.00 0.00 0.00 4.57
3834 6584 0.254462 TGTGTGTGTGCTTCTGGGAA 59.746 50.000 0.00 0.00 0.00 3.97
3836 6586 1.956477 GTGTGTGTGCTTCTGGGAATT 59.044 47.619 0.00 0.00 0.00 2.17
3883 6635 6.634955 GCCACCCCTTCCGAATTCATATATAT 60.635 42.308 6.22 0.00 0.00 0.86
3912 6664 5.326200 AGGTCTTCCTGATACAAACTACG 57.674 43.478 0.00 0.00 43.33 3.51
3970 6722 5.764192 TGGTACAAGTATGTTGGGTTTGTAC 59.236 40.000 14.24 14.24 46.60 2.90
4083 6835 7.388776 ACAATGTGGAAATCCGATCATACTATG 59.611 37.037 0.00 0.00 39.43 2.23
4084 6836 6.419484 TGTGGAAATCCGATCATACTATGT 57.581 37.500 0.00 0.00 39.43 2.29
4085 6837 7.533289 TGTGGAAATCCGATCATACTATGTA 57.467 36.000 0.00 0.00 39.43 2.29
4086 6838 7.375834 TGTGGAAATCCGATCATACTATGTAC 58.624 38.462 0.00 0.00 39.43 2.90
4087 6839 7.232737 TGTGGAAATCCGATCATACTATGTACT 59.767 37.037 0.00 0.00 39.43 2.73
4088 6840 7.755822 GTGGAAATCCGATCATACTATGTACTC 59.244 40.741 0.00 0.00 39.43 2.59
4089 6841 7.093902 TGGAAATCCGATCATACTATGTACTCC 60.094 40.741 0.00 0.00 39.43 3.85
4090 6842 6.777213 AATCCGATCATACTATGTACTCCC 57.223 41.667 0.00 0.00 0.00 4.30
4091 6843 4.597004 TCCGATCATACTATGTACTCCCC 58.403 47.826 0.00 0.00 0.00 4.81
4092 6844 3.700038 CCGATCATACTATGTACTCCCCC 59.300 52.174 0.00 0.00 0.00 5.40
4093 6845 4.570079 CCGATCATACTATGTACTCCCCCT 60.570 50.000 0.00 0.00 0.00 4.79
4094 6846 4.399618 CGATCATACTATGTACTCCCCCTG 59.600 50.000 0.00 0.00 0.00 4.45
4095 6847 4.827036 TCATACTATGTACTCCCCCTGT 57.173 45.455 0.00 0.00 0.00 4.00
4096 6848 4.737578 TCATACTATGTACTCCCCCTGTC 58.262 47.826 0.00 0.00 0.00 3.51
4097 6849 2.473576 ACTATGTACTCCCCCTGTCC 57.526 55.000 0.00 0.00 0.00 4.02
4098 6850 1.938069 ACTATGTACTCCCCCTGTCCT 59.062 52.381 0.00 0.00 0.00 3.85
4099 6851 3.136896 ACTATGTACTCCCCCTGTCCTA 58.863 50.000 0.00 0.00 0.00 2.94
4100 6852 3.534747 ACTATGTACTCCCCCTGTCCTAA 59.465 47.826 0.00 0.00 0.00 2.69
4101 6853 3.502051 ATGTACTCCCCCTGTCCTAAA 57.498 47.619 0.00 0.00 0.00 1.85
4102 6854 3.502051 TGTACTCCCCCTGTCCTAAAT 57.498 47.619 0.00 0.00 0.00 1.40
4103 6855 4.630382 TGTACTCCCCCTGTCCTAAATA 57.370 45.455 0.00 0.00 0.00 1.40
4104 6856 5.166013 TGTACTCCCCCTGTCCTAAATAT 57.834 43.478 0.00 0.00 0.00 1.28
4105 6857 5.544682 TGTACTCCCCCTGTCCTAAATATT 58.455 41.667 0.00 0.00 0.00 1.28
4106 6858 5.974370 TGTACTCCCCCTGTCCTAAATATTT 59.026 40.000 5.89 5.89 0.00 1.40
4107 6859 5.388599 ACTCCCCCTGTCCTAAATATTTG 57.611 43.478 11.05 1.40 0.00 2.32
4108 6860 4.794067 ACTCCCCCTGTCCTAAATATTTGT 59.206 41.667 11.05 0.00 0.00 2.83
4109 6861 5.104067 ACTCCCCCTGTCCTAAATATTTGTC 60.104 44.000 11.05 0.00 0.00 3.18
4110 6862 5.043762 TCCCCCTGTCCTAAATATTTGTCT 58.956 41.667 11.05 0.00 0.00 3.41
4111 6863 5.494706 TCCCCCTGTCCTAAATATTTGTCTT 59.505 40.000 11.05 0.00 0.00 3.01
4112 6864 6.011096 TCCCCCTGTCCTAAATATTTGTCTTT 60.011 38.462 11.05 0.00 0.00 2.52
4113 6865 6.667848 CCCCCTGTCCTAAATATTTGTCTTTT 59.332 38.462 11.05 0.00 0.00 2.27
4114 6866 7.180229 CCCCCTGTCCTAAATATTTGTCTTTTT 59.820 37.037 11.05 0.00 0.00 1.94
4115 6867 9.250246 CCCCTGTCCTAAATATTTGTCTTTTTA 57.750 33.333 11.05 0.00 0.00 1.52
4143 6895 9.314321 AGATTTCAAATGAACTACTACATACGG 57.686 33.333 0.00 0.00 33.13 4.02
4144 6896 9.309516 GATTTCAAATGAACTACTACATACGGA 57.690 33.333 0.00 0.00 33.13 4.69
4145 6897 9.832445 ATTTCAAATGAACTACTACATACGGAT 57.168 29.630 0.00 0.00 33.13 4.18
4146 6898 8.642908 TTCAAATGAACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
4148 6900 8.905850 TCAAATGAACTACTACATACGGATGTA 58.094 33.333 19.32 19.32 44.77 2.29
4149 6901 9.692749 CAAATGAACTACTACATACGGATGTAT 57.307 33.333 20.64 13.02 45.42 2.29
4188 6940 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4189 6941 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4190 6942 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4191 6943 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4192 6944 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4193 6945 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4194 6946 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4195 6947 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4196 6948 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4197 6949 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4198 6950 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4199 6951 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4200 6952 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4201 6953 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4202 6954 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4203 6955 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4204 6956 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4205 6957 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4206 6958 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4207 6959 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4208 6960 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4209 6961 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4210 6962 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4211 6963 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4212 6964 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4213 6965 6.183360 CCGTATGTAGTCACTTGTTGAAATCC 60.183 42.308 0.00 0.00 35.39 3.01
4214 6966 6.183360 CGTATGTAGTCACTTGTTGAAATCCC 60.183 42.308 0.00 0.00 35.39 3.85
4215 6967 5.304686 TGTAGTCACTTGTTGAAATCCCT 57.695 39.130 0.00 0.00 35.39 4.20
4216 6968 6.428083 TGTAGTCACTTGTTGAAATCCCTA 57.572 37.500 0.00 0.00 35.39 3.53
4217 6969 6.464222 TGTAGTCACTTGTTGAAATCCCTAG 58.536 40.000 0.00 0.00 35.39 3.02
4218 6970 5.825593 AGTCACTTGTTGAAATCCCTAGA 57.174 39.130 0.00 0.00 35.39 2.43
4219 6971 6.187727 AGTCACTTGTTGAAATCCCTAGAA 57.812 37.500 0.00 0.00 35.39 2.10
4220 6972 6.601332 AGTCACTTGTTGAAATCCCTAGAAA 58.399 36.000 0.00 0.00 35.39 2.52
4221 6973 6.712547 AGTCACTTGTTGAAATCCCTAGAAAG 59.287 38.462 0.00 0.00 35.39 2.62
4222 6974 6.710744 GTCACTTGTTGAAATCCCTAGAAAGA 59.289 38.462 0.00 0.00 35.39 2.52
4223 6975 6.710744 TCACTTGTTGAAATCCCTAGAAAGAC 59.289 38.462 0.00 0.00 0.00 3.01
4224 6976 6.486657 CACTTGTTGAAATCCCTAGAAAGACA 59.513 38.462 0.00 0.00 0.00 3.41
4225 6977 7.013274 CACTTGTTGAAATCCCTAGAAAGACAA 59.987 37.037 0.00 0.00 0.00 3.18
4226 6978 7.559897 ACTTGTTGAAATCCCTAGAAAGACAAA 59.440 33.333 0.00 0.00 0.00 2.83
4227 6979 8.477419 TTGTTGAAATCCCTAGAAAGACAAAT 57.523 30.769 0.00 0.00 0.00 2.32
4228 6980 9.581289 TTGTTGAAATCCCTAGAAAGACAAATA 57.419 29.630 0.00 0.00 0.00 1.40
4229 6981 9.753674 TGTTGAAATCCCTAGAAAGACAAATAT 57.246 29.630 0.00 0.00 0.00 1.28
4237 6989 9.901172 TCCCTAGAAAGACAAATATTTAGGAAC 57.099 33.333 9.87 0.00 0.00 3.62
4238 6990 8.827677 CCCTAGAAAGACAAATATTTAGGAACG 58.172 37.037 9.87 0.00 0.00 3.95
4239 6991 8.827677 CCTAGAAAGACAAATATTTAGGAACGG 58.172 37.037 0.00 0.00 0.00 4.44
4240 6992 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4241 6993 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4242 6994 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4243 6995 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4244 6996 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4275 7027 9.567776 TTCAGTGTAACATTTTAAGAGGAATCA 57.432 29.630 0.00 0.00 41.43 2.57
4276 7028 9.567776 TCAGTGTAACATTTTAAGAGGAATCAA 57.432 29.630 0.00 0.00 41.43 2.57
4306 7058 9.060347 ACACTTATGCATCTAAAACTATCATGG 57.940 33.333 0.19 0.00 0.00 3.66
4359 7111 9.899661 TTTAGCTAAGCCTTCTTGAACATATAA 57.100 29.630 6.24 0.00 33.85 0.98
4430 7182 8.274939 CGTAACAGAAATTCAACATTTGCATTT 58.725 29.630 0.00 0.00 38.80 2.32
4431 7183 9.934190 GTAACAGAAATTCAACATTTGCATTTT 57.066 25.926 0.00 0.00 36.79 1.82
4496 7259 1.215673 TGGGTGGGCACTTCTTTGTTA 59.784 47.619 0.00 0.00 0.00 2.41
4521 7284 3.243501 CCAGTTTACAGCAAGCAACACAT 60.244 43.478 0.00 0.00 0.00 3.21
4590 7353 9.952188 GTCTAGTTTATTTGCTTGTTTCTTCTT 57.048 29.630 0.00 0.00 0.00 2.52
4609 7372 6.551601 TCTTCTTCTCTCAAGTTTACTCTGGT 59.448 38.462 0.00 0.00 0.00 4.00
4783 7546 2.026014 CGCGCTGTTTGCCTGTTT 59.974 55.556 5.56 0.00 38.78 2.83
4810 7573 5.630415 TTGGAGATGGGGTAAGTCAATAG 57.370 43.478 0.00 0.00 0.00 1.73
4846 7609 4.502016 TGTCTCTGATGCTTGTGAGATTC 58.498 43.478 0.00 0.00 37.79 2.52
4951 7736 9.654663 GTGAACTTTTCCATGTATCTAGTAACT 57.345 33.333 0.00 0.00 0.00 2.24
4977 7765 6.389906 ACCGCTTTTCCATCATTCTTTTTAG 58.610 36.000 0.00 0.00 0.00 1.85
5028 7816 9.507329 ACTAAGAAATCTTGCAGTGAGATAAAA 57.493 29.630 5.93 0.00 37.40 1.52
5040 7828 5.233050 CAGTGAGATAAAATACGTGCTCAGG 59.767 44.000 0.00 0.00 33.55 3.86
5097 7885 5.215160 CAAGTTCCTGCATGTTAGTTTCAC 58.785 41.667 0.00 0.00 0.00 3.18
5143 7931 5.463724 GTCTTTTGACTGTGTGAGGTCTAAG 59.536 44.000 0.00 0.00 45.55 2.18
5490 8291 5.434408 TGGAGACACACACGTATCTAGTAT 58.566 41.667 0.00 0.00 33.40 2.12
5551 8352 4.422840 TGTCTTTGAACATTGTGTTGCTG 58.577 39.130 0.00 0.00 41.28 4.41
5555 8356 1.408340 TGAACATTGTGTTGCTGTGGG 59.592 47.619 0.00 0.00 41.28 4.61
5605 8406 2.280524 TCGTGCCCTGTGAAACGG 60.281 61.111 0.00 0.00 44.86 4.44
5678 8479 2.428890 GTGCATACAGTGAGCCTAGACT 59.571 50.000 0.00 0.00 0.00 3.24
5679 8480 3.632604 GTGCATACAGTGAGCCTAGACTA 59.367 47.826 0.00 0.00 0.00 2.59
5681 8482 4.138290 GCATACAGTGAGCCTAGACTAGA 58.862 47.826 11.27 0.00 0.00 2.43
5682 8483 4.023536 GCATACAGTGAGCCTAGACTAGAC 60.024 50.000 11.27 0.00 0.00 2.59
5683 8484 3.722908 ACAGTGAGCCTAGACTAGACA 57.277 47.619 11.27 5.65 0.00 3.41
5716 8517 3.116590 ACTGATCCATGATGAGTAGGGGA 60.117 47.826 0.00 0.00 34.95 4.81
5753 8554 6.349300 TCTTTTCTTAGAATCGGAGAATGGG 58.651 40.000 0.00 0.00 43.58 4.00
5773 8574 4.289410 TGGGAATCCACTGATCTCTTTTCA 59.711 41.667 0.09 0.00 38.32 2.69
5792 8593 2.295909 TCATTTTCGCCTCTTGGTTTGG 59.704 45.455 0.00 0.00 35.27 3.28
5848 8649 1.713647 TCTACCAGGGCCAAATTCCAA 59.286 47.619 6.18 0.00 0.00 3.53
5865 8674 3.575351 AAGCCACGTCTCGGTGCTC 62.575 63.158 7.77 0.00 36.98 4.26
5951 8760 0.818296 AGAAACGGGAGAGGATCGTG 59.182 55.000 0.00 0.00 42.67 4.35
6002 8812 4.478699 CAACGTTGTGGTAATCGTAGAGA 58.521 43.478 20.21 0.00 43.63 3.10
6023 8833 2.029666 CAGTGATCCGATCGGCCC 59.970 66.667 29.62 21.65 34.68 5.80
6032 8842 2.969238 GATCGGCCCACATCGCAG 60.969 66.667 0.00 0.00 0.00 5.18
6080 8894 1.374758 CACTGACTGAACCCCGAGC 60.375 63.158 0.00 0.00 0.00 5.03
6181 8995 1.927174 CAGTGCTACGTCCATGCTAAC 59.073 52.381 0.00 0.00 0.00 2.34
6200 9014 9.956720 ATGCTAACATGCTTATTTATCTTCAAC 57.043 29.630 0.00 0.00 34.35 3.18
6205 9019 7.688372 ACATGCTTATTTATCTTCAACTGACG 58.312 34.615 0.00 0.00 0.00 4.35
6224 9038 4.235360 GACGATTAGATTACACCATCCGG 58.765 47.826 0.00 0.00 38.77 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.814553 CACTATTGTGTGGTAGTAGTACCCGAT 61.815 44.444 21.70 14.24 40.56 4.18
7 8 7.574568 CACTATTGTGTGGTAGTAGTACCCGA 61.575 46.154 21.70 8.67 40.56 5.14
8 9 5.449588 CACTATTGTGTGGTAGTAGTACCCG 60.450 48.000 21.70 5.09 40.56 5.28
9 10 5.899299 CACTATTGTGTGGTAGTAGTACCC 58.101 45.833 21.70 14.16 40.56 3.69
21 22 0.251121 TGGCCCACCACTATTGTGTG 60.251 55.000 0.00 5.07 42.67 3.82
22 23 2.159713 TGGCCCACCACTATTGTGT 58.840 52.632 0.00 0.00 42.67 3.72
42 43 1.140252 ACGACCACACAAGGCTACTTT 59.860 47.619 0.00 0.00 33.81 2.66
43 44 0.756903 ACGACCACACAAGGCTACTT 59.243 50.000 0.00 0.00 37.43 2.24
45 46 0.249741 ACACGACCACACAAGGCTAC 60.250 55.000 0.00 0.00 0.00 3.58
138 140 0.794605 GAGGAAAAATCAGTGCGCGC 60.795 55.000 27.26 27.26 0.00 6.86
230 232 2.425394 GAACGCGCATTGCCGTTTC 61.425 57.895 26.88 19.50 42.11 2.78
288 299 1.679977 ATGCTGCCATCCACACCAC 60.680 57.895 0.00 0.00 0.00 4.16
289 300 1.679641 CATGCTGCCATCCACACCA 60.680 57.895 0.00 0.00 0.00 4.17
290 301 2.420568 CCATGCTGCCATCCACACC 61.421 63.158 0.00 0.00 0.00 4.16
291 302 3.072486 GCCATGCTGCCATCCACAC 62.072 63.158 0.00 0.00 0.00 3.82
292 303 2.756691 GCCATGCTGCCATCCACA 60.757 61.111 0.00 0.00 0.00 4.17
293 304 2.131709 ATGCCATGCTGCCATCCAC 61.132 57.895 0.00 0.00 0.00 4.02
294 305 2.131067 CATGCCATGCTGCCATCCA 61.131 57.895 0.00 0.00 0.00 3.41
295 306 2.734591 CATGCCATGCTGCCATCC 59.265 61.111 0.00 0.00 0.00 3.51
296 307 2.734591 CCATGCCATGCTGCCATC 59.265 61.111 0.00 0.00 0.00 3.51
297 308 2.650226 TAGCCATGCCATGCTGCCAT 62.650 55.000 0.00 0.00 38.52 4.40
298 309 3.361916 TAGCCATGCCATGCTGCCA 62.362 57.895 0.00 0.00 38.52 4.92
299 310 2.520020 TAGCCATGCCATGCTGCC 60.520 61.111 0.00 0.00 38.52 4.85
300 311 2.726274 GTAGCCATGCCATGCTGC 59.274 61.111 0.00 0.00 38.52 5.25
301 312 3.028130 CGTAGCCATGCCATGCTG 58.972 61.111 0.00 0.00 38.52 4.41
411 426 0.028637 GCGCCTCCTGTAGTACGTAC 59.971 60.000 18.10 18.10 0.00 3.67
418 433 3.736482 GACGACGCGCCTCCTGTAG 62.736 68.421 5.73 0.00 0.00 2.74
419 434 3.807538 GACGACGCGCCTCCTGTA 61.808 66.667 5.73 0.00 0.00 2.74
478 528 4.555709 TGGTTTGAGCGCGGTGGT 62.556 61.111 18.92 0.00 0.00 4.16
484 534 2.729491 GCCGTTTGGTTTGAGCGC 60.729 61.111 0.00 0.00 37.67 5.92
525 619 1.033202 TACGGATCACTAGCGTGGCA 61.033 55.000 4.49 0.00 41.53 4.92
528 2897 0.316772 CCGTACGGATCACTAGCGTG 60.317 60.000 30.64 0.00 38.94 5.34
580 2949 2.611473 CCTGTCTGTAACTCTGCCAGTG 60.611 54.545 0.00 0.00 34.56 3.66
747 3126 3.309296 TCTCTCTCTCTCTCTCTCCTCC 58.691 54.545 0.00 0.00 0.00 4.30
748 3127 4.219115 TCTCTCTCTCTCTCTCTCTCCTC 58.781 52.174 0.00 0.00 0.00 3.71
749 3128 4.078922 TCTCTCTCTCTCTCTCTCTCTCCT 60.079 50.000 0.00 0.00 0.00 3.69
750 3129 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
751 3130 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
752 3131 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
753 3132 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
754 3133 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
755 3134 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
756 3135 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
757 3136 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
758 3137 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
759 3138 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
760 3139 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
761 3140 4.892934 AGTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
762 3141 4.648762 CAGTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
763 3142 4.202202 CCAGTCTCTCTCTCTCTCTCTCTC 60.202 54.167 0.00 0.00 0.00 3.20
764 3143 3.708631 CCAGTCTCTCTCTCTCTCTCTCT 59.291 52.174 0.00 0.00 0.00 3.10
765 3144 3.181461 CCCAGTCTCTCTCTCTCTCTCTC 60.181 56.522 0.00 0.00 0.00 3.20
766 3145 2.774234 CCCAGTCTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
767 3146 2.771943 TCCCAGTCTCTCTCTCTCTCTC 59.228 54.545 0.00 0.00 0.00 3.20
768 3147 2.774234 CTCCCAGTCTCTCTCTCTCTCT 59.226 54.545 0.00 0.00 0.00 3.10
812 3193 3.574074 TTTCTGGGGAGCTGCAGCC 62.574 63.158 34.39 24.38 43.38 4.85
848 3229 3.615709 GCCTTGCTTTTGGCCGGT 61.616 61.111 1.90 0.00 43.11 5.28
902 3283 2.271493 GATCAGGGAGGGGAGGGGAA 62.271 65.000 0.00 0.00 0.00 3.97
903 3284 2.628465 ATCAGGGAGGGGAGGGGA 60.628 66.667 0.00 0.00 0.00 4.81
904 3285 2.122189 GATCAGGGAGGGGAGGGG 60.122 72.222 0.00 0.00 0.00 4.79
905 3286 2.525381 CGATCAGGGAGGGGAGGG 60.525 72.222 0.00 0.00 0.00 4.30
906 3287 1.834822 GTCGATCAGGGAGGGGAGG 60.835 68.421 0.00 0.00 0.00 4.30
948 3514 2.907897 GATTGGGCGGAGTGGACGAG 62.908 65.000 0.00 0.00 0.00 4.18
949 3515 3.000819 ATTGGGCGGAGTGGACGA 61.001 61.111 0.00 0.00 0.00 4.20
951 3517 2.124695 GGATTGGGCGGAGTGGAC 60.125 66.667 0.00 0.00 0.00 4.02
1292 3859 2.372688 GATGGGGACTGGGGAGGA 59.627 66.667 0.00 0.00 0.00 3.71
1312 3879 2.802816 GCGCGGATGATGAGAAATTAGT 59.197 45.455 8.83 0.00 0.00 2.24
1314 3881 3.111853 AGCGCGGATGATGAGAAATTA 57.888 42.857 8.83 0.00 0.00 1.40
1315 3882 1.959042 AGCGCGGATGATGAGAAATT 58.041 45.000 8.83 0.00 0.00 1.82
1316 3883 2.036475 ACTAGCGCGGATGATGAGAAAT 59.964 45.455 8.83 0.00 0.00 2.17
1371 3942 3.656651 TTGTAAAGCGATTGATGCTCG 57.343 42.857 0.00 0.00 43.14 5.03
1395 3966 4.495422 AGCAACGATTGGAAGTAGTAGTG 58.505 43.478 0.00 0.00 0.00 2.74
1503 4074 4.095036 GGATCAGATTTTCCGTTCCTGAAC 59.905 45.833 0.00 0.00 37.41 3.18
1504 4075 4.261801 GGATCAGATTTTCCGTTCCTGAA 58.738 43.478 0.00 0.00 37.41 3.02
1520 4091 6.150307 AGTGATTAGAGTACATAGCGGATCAG 59.850 42.308 0.00 0.00 0.00 2.90
1526 4097 5.690997 TGGAGTGATTAGAGTACATAGCG 57.309 43.478 0.00 0.00 0.00 4.26
1610 4195 4.889409 AGACACATGTTCTCCACAATTTGT 59.111 37.500 0.00 0.00 39.50 2.83
1614 4199 4.637534 GCATAGACACATGTTCTCCACAAT 59.362 41.667 12.05 1.19 39.50 2.71
1622 4207 4.941263 TGGGTTTAGCATAGACACATGTTC 59.059 41.667 0.00 0.00 33.74 3.18
1637 4222 4.504858 AGTTCGTTATGAGCTGGGTTTAG 58.495 43.478 0.00 0.00 36.71 1.85
1639 4224 3.418684 AGTTCGTTATGAGCTGGGTTT 57.581 42.857 0.00 0.00 36.71 3.27
1641 4226 4.281182 CCTATAGTTCGTTATGAGCTGGGT 59.719 45.833 0.00 0.00 38.74 4.51
1651 4242 7.262772 CAAATCCACACTCCTATAGTTCGTTA 58.737 38.462 0.00 0.00 35.76 3.18
1717 4308 9.283420 GAAGGTAAGTGTAACGAACTTATAGTC 57.717 37.037 0.00 0.00 45.86 2.59
1830 4422 2.693591 TGATACACAGGCAGTAGTAGGC 59.306 50.000 0.00 0.00 0.00 3.93
1853 4475 8.966069 CTGCCTATAGTATGCAGTACTAGATA 57.034 38.462 16.88 8.87 46.25 1.98
1983 4606 4.278669 TCCGCCTTGTAAATGTTTAAAGCA 59.721 37.500 0.00 0.00 0.00 3.91
2119 4742 3.343941 TGCAGGGGATTGTACTACAAC 57.656 47.619 3.67 0.00 41.40 3.32
2215 4838 4.436998 GTACTGCGCGCACTCCCT 62.437 66.667 33.09 12.46 0.00 4.20
2414 5038 7.332182 GTCAACAACAACAAAAACCCTATTTCA 59.668 33.333 0.00 0.00 0.00 2.69
2419 5043 4.380655 CCGTCAACAACAACAAAAACCCTA 60.381 41.667 0.00 0.00 0.00 3.53
2486 5110 8.211629 AGTTCACTAGTTTGTAATATGGGGATC 58.788 37.037 0.00 0.00 0.00 3.36
2497 5121 9.918630 GTTCCTATTGTAGTTCACTAGTTTGTA 57.081 33.333 0.00 0.00 30.46 2.41
2525 5149 8.821686 AAAAGGACATGTGGATGTGATATTTA 57.178 30.769 1.15 0.00 43.22 1.40
2565 5197 6.765989 AGTGAACAGAAATGCAGTTTAGTACA 59.234 34.615 0.00 0.00 0.00 2.90
2680 5312 6.538945 ACCAAACACACCATAAAAGAACTT 57.461 33.333 0.00 0.00 0.00 2.66
2691 5323 1.550976 GTTCCCAAACCAAACACACCA 59.449 47.619 0.00 0.00 0.00 4.17
2722 5354 4.019174 GTGGAATGGAACCATGACATTCT 58.981 43.478 20.90 0.00 45.93 2.40
2919 5551 7.743104 ACAATCGATGTAATCAAGTGTTCTTC 58.257 34.615 0.00 0.00 45.97 2.87
2920 5552 7.672983 ACAATCGATGTAATCAAGTGTTCTT 57.327 32.000 0.00 0.00 45.97 2.52
2921 5553 8.771920 TTACAATCGATGTAATCAAGTGTTCT 57.228 30.769 0.00 0.00 46.88 3.01
2948 5580 3.066064 TGCAGCGTCAAGTACATTTGTTT 59.934 39.130 0.00 0.00 0.00 2.83
2953 5585 2.169832 ACTGCAGCGTCAAGTACATT 57.830 45.000 15.27 0.00 0.00 2.71
3056 5765 0.670162 GGTGTGCAGTGACATTTGCT 59.330 50.000 13.79 0.00 40.87 3.91
3117 5826 2.900273 CTGGGCGCTACTAAGGCA 59.100 61.111 7.64 0.00 34.32 4.75
3125 5838 3.865383 CATGGAGGCTGGGCGCTA 61.865 66.667 7.64 0.00 39.13 4.26
3145 5858 2.040278 CTCACTCATTTCCTTCCACCCA 59.960 50.000 0.00 0.00 0.00 4.51
3148 5861 3.604582 CCTCTCACTCATTTCCTTCCAC 58.395 50.000 0.00 0.00 0.00 4.02
3157 5870 1.606531 GGCAGCCCTCTCACTCATT 59.393 57.895 0.00 0.00 0.00 2.57
3159 5872 3.005539 GGGCAGCCCTCTCACTCA 61.006 66.667 24.99 0.00 41.34 3.41
3205 5918 4.459089 GTCGGGCAGCCCTCTCAC 62.459 72.222 28.80 15.03 42.67 3.51
3282 5995 4.400109 CTTGCGCTGGTGCTGCTG 62.400 66.667 9.73 0.00 38.69 4.41
3289 6002 2.360350 CCACATCCTTGCGCTGGT 60.360 61.111 9.73 0.00 0.00 4.00
3385 6098 3.797353 CCCACATGTCCCCCTCCG 61.797 72.222 0.00 0.00 0.00 4.63
3395 6108 4.764771 CCTGGCCACCCCCACATG 62.765 72.222 0.00 0.00 0.00 3.21
3482 6225 1.885163 GCTCGTCTTTCCTCCCCGAA 61.885 60.000 0.00 0.00 0.00 4.30
3483 6226 2.348888 GCTCGTCTTTCCTCCCCGA 61.349 63.158 0.00 0.00 0.00 5.14
3503 6247 1.136147 GAACGGCTCGCTCGACTTA 59.864 57.895 6.75 0.00 0.00 2.24
3595 6345 0.953960 CAAAGGAACGAGAACCCCCG 60.954 60.000 0.00 0.00 0.00 5.73
3596 6346 0.399075 TCAAAGGAACGAGAACCCCC 59.601 55.000 0.00 0.00 0.00 5.40
3597 6347 1.202722 TGTCAAAGGAACGAGAACCCC 60.203 52.381 0.00 0.00 0.00 4.95
3648 6398 4.981806 ATGAAATGTAATGGGTCGGTTG 57.018 40.909 0.00 0.00 0.00 3.77
3759 6509 9.988350 CTTTGAAGTACGTATGATAGCAAAAAT 57.012 29.630 0.00 0.00 0.00 1.82
3842 6592 2.826128 GGTGGCCCCTCTTTCTTAAAAG 59.174 50.000 0.00 0.00 42.77 2.27
3843 6593 2.884320 GGTGGCCCCTCTTTCTTAAAA 58.116 47.619 0.00 0.00 0.00 1.52
3883 6635 6.442541 TTGTATCAGGAAGACCTTGGTTTA 57.557 37.500 0.00 0.00 45.36 2.01
3912 6664 1.318576 AGGTAAACAGTGCCACAAGC 58.681 50.000 0.00 0.00 44.14 4.01
3970 6722 2.299297 AGGTTGGGACTAAGTCGTTCTG 59.701 50.000 0.00 0.00 32.65 3.02
4049 6801 6.046593 TCGGATTTCCACATTGTAGTATGAC 58.953 40.000 0.00 0.00 35.14 3.06
4083 6835 6.126565 ACAAATATTTAGGACAGGGGGAGTAC 60.127 42.308 0.00 0.00 0.00 2.73
4084 6836 5.974370 ACAAATATTTAGGACAGGGGGAGTA 59.026 40.000 0.00 0.00 0.00 2.59
4085 6837 4.794067 ACAAATATTTAGGACAGGGGGAGT 59.206 41.667 0.00 0.00 0.00 3.85
4086 6838 5.132816 AGACAAATATTTAGGACAGGGGGAG 59.867 44.000 0.00 0.00 0.00 4.30
4087 6839 5.043762 AGACAAATATTTAGGACAGGGGGA 58.956 41.667 0.00 0.00 0.00 4.81
4088 6840 5.388599 AGACAAATATTTAGGACAGGGGG 57.611 43.478 0.00 0.00 0.00 5.40
4089 6841 7.718334 AAAAGACAAATATTTAGGACAGGGG 57.282 36.000 0.00 0.00 0.00 4.79
4117 6869 9.314321 CCGTATGTAGTAGTTCATTTGAAATCT 57.686 33.333 0.00 0.00 35.58 2.40
4118 6870 9.309516 TCCGTATGTAGTAGTTCATTTGAAATC 57.690 33.333 0.00 0.00 35.58 2.17
4119 6871 9.832445 ATCCGTATGTAGTAGTTCATTTGAAAT 57.168 29.630 0.00 0.00 35.58 2.17
4120 6872 9.093970 CATCCGTATGTAGTAGTTCATTTGAAA 57.906 33.333 0.00 0.00 35.58 2.69
4121 6873 8.255206 ACATCCGTATGTAGTAGTTCATTTGAA 58.745 33.333 0.00 0.00 44.66 2.69
4122 6874 7.778083 ACATCCGTATGTAGTAGTTCATTTGA 58.222 34.615 0.00 0.00 44.66 2.69
4166 6918 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4167 6919 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4168 6920 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4169 6921 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4170 6922 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4171 6923 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4172 6924 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4173 6925 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4174 6926 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4175 6927 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4176 6928 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4177 6929 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4178 6930 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4179 6931 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4180 6932 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4181 6933 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4182 6934 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4183 6935 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4184 6936 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4185 6937 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4186 6938 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4187 6939 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4188 6940 6.183360 GGATTTCAACAAGTGACTACATACGG 60.183 42.308 0.00 0.00 35.39 4.02
4189 6941 6.183360 GGGATTTCAACAAGTGACTACATACG 60.183 42.308 0.00 0.00 35.39 3.06
4190 6942 6.879458 AGGGATTTCAACAAGTGACTACATAC 59.121 38.462 0.00 0.00 35.39 2.39
4191 6943 7.016153 AGGGATTTCAACAAGTGACTACATA 57.984 36.000 0.00 0.00 35.39 2.29
4192 6944 5.880901 AGGGATTTCAACAAGTGACTACAT 58.119 37.500 0.00 0.00 35.39 2.29
4193 6945 5.304686 AGGGATTTCAACAAGTGACTACA 57.695 39.130 0.00 0.00 35.39 2.74
4194 6946 6.698380 TCTAGGGATTTCAACAAGTGACTAC 58.302 40.000 0.00 0.00 35.39 2.73
4195 6947 6.928348 TCTAGGGATTTCAACAAGTGACTA 57.072 37.500 0.00 0.00 35.39 2.59
4196 6948 5.825593 TCTAGGGATTTCAACAAGTGACT 57.174 39.130 0.00 0.00 35.39 3.41
4197 6949 6.710744 TCTTTCTAGGGATTTCAACAAGTGAC 59.289 38.462 0.00 0.00 35.39 3.67
4198 6950 6.710744 GTCTTTCTAGGGATTTCAACAAGTGA 59.289 38.462 0.00 0.00 0.00 3.41
4199 6951 6.486657 TGTCTTTCTAGGGATTTCAACAAGTG 59.513 38.462 0.00 0.00 0.00 3.16
4200 6952 6.601332 TGTCTTTCTAGGGATTTCAACAAGT 58.399 36.000 0.00 0.00 0.00 3.16
4201 6953 7.510549 TTGTCTTTCTAGGGATTTCAACAAG 57.489 36.000 0.00 0.00 0.00 3.16
4202 6954 7.889873 TTTGTCTTTCTAGGGATTTCAACAA 57.110 32.000 0.00 0.00 0.00 2.83
4203 6955 9.753674 ATATTTGTCTTTCTAGGGATTTCAACA 57.246 29.630 0.00 0.00 0.00 3.33
4211 6963 9.901172 GTTCCTAAATATTTGTCTTTCTAGGGA 57.099 33.333 11.05 0.00 0.00 4.20
4212 6964 8.827677 CGTTCCTAAATATTTGTCTTTCTAGGG 58.172 37.037 11.05 0.00 0.00 3.53
4213 6965 8.827677 CCGTTCCTAAATATTTGTCTTTCTAGG 58.172 37.037 11.05 6.95 0.00 3.02
4214 6966 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4215 6967 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4216 6968 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4217 6969 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4218 6970 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4219 6971 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4220 6972 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4221 6973 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4222 6974 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4223 6975 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4224 6976 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4225 6977 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4226 6978 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4227 6979 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4228 6980 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4229 6981 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4230 6982 3.245371 TGAAGTACTCCCTCCGTTCCTAA 60.245 47.826 0.00 0.00 0.00 2.69
4231 6983 2.309755 TGAAGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
4232 6984 1.076677 TGAAGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
4233 6985 1.477295 CTGAAGTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 0.00 3.62
4234 6986 2.094649 CACTGAAGTACTCCCTCCGTTC 60.095 54.545 0.00 0.00 0.00 3.95
4235 6987 1.893801 CACTGAAGTACTCCCTCCGTT 59.106 52.381 0.00 0.00 0.00 4.44
4236 6988 1.203025 ACACTGAAGTACTCCCTCCGT 60.203 52.381 0.00 0.00 0.00 4.69
4237 6989 1.546961 ACACTGAAGTACTCCCTCCG 58.453 55.000 0.00 0.00 0.00 4.63
4238 6990 3.830755 TGTTACACTGAAGTACTCCCTCC 59.169 47.826 0.00 0.00 0.00 4.30
4239 6991 5.662674 ATGTTACACTGAAGTACTCCCTC 57.337 43.478 0.00 0.00 0.00 4.30
4240 6992 6.435292 AAATGTTACACTGAAGTACTCCCT 57.565 37.500 0.00 0.00 0.00 4.20
4241 6993 8.611654 TTAAAATGTTACACTGAAGTACTCCC 57.388 34.615 0.00 0.00 0.00 4.30
4242 6994 9.485206 TCTTAAAATGTTACACTGAAGTACTCC 57.515 33.333 0.00 0.00 0.00 3.85
4244 6996 9.490379 CCTCTTAAAATGTTACACTGAAGTACT 57.510 33.333 0.00 0.00 0.00 2.73
4288 7040 5.049129 GGAGCACCATGATAGTTTTAGATGC 60.049 44.000 0.00 0.00 35.97 3.91
4359 7111 5.193679 AGCAGTAACAAAACCAGAGAAACT 58.806 37.500 0.00 0.00 0.00 2.66
4431 7183 9.246670 ACAAAATTTAGATCATCCACTCATCAA 57.753 29.630 0.00 0.00 0.00 2.57
4496 7259 0.178992 TGCTTGCTGTAAACTGGGCT 60.179 50.000 0.00 0.00 0.00 5.19
4521 7284 7.701539 ATAACTCCAAAGCATGAACACAATA 57.298 32.000 0.00 0.00 0.00 1.90
4590 7353 5.047943 GCACTACCAGAGTAAACTTGAGAGA 60.048 44.000 0.00 0.00 35.64 3.10
4783 7546 1.140852 CTTACCCCATCTCCAATCGCA 59.859 52.381 0.00 0.00 0.00 5.10
4810 7573 5.321959 TCAGAGACATGAACAGAGATGTC 57.678 43.478 0.00 0.00 45.97 3.06
4846 7609 7.495901 AGATGATACAGTAGATTGACCAAGTG 58.504 38.462 0.00 0.00 0.00 3.16
4914 7699 3.242837 GGAAAAGTTCACACGGGTAACAC 60.243 47.826 11.12 0.14 39.74 3.32
4917 7702 3.278668 TGGAAAAGTTCACACGGGTAA 57.721 42.857 0.00 0.00 0.00 2.85
4951 7736 5.975693 AAAGAATGATGGAAAAGCGGTAA 57.024 34.783 0.00 0.00 0.00 2.85
4954 7739 5.289434 GCTAAAAAGAATGATGGAAAAGCGG 59.711 40.000 0.00 0.00 0.00 5.52
4977 7765 1.545582 ACACCACACAGCCAATATTGC 59.454 47.619 10.11 5.92 0.00 3.56
5028 7816 1.814394 TGTCGTAACCTGAGCACGTAT 59.186 47.619 0.00 0.00 37.02 3.06
5040 7828 5.912396 TGCAGTTTCATTCAATTGTCGTAAC 59.088 36.000 5.13 5.80 0.00 2.50
5097 7885 7.729116 AGACAATGCATTTATAATTTCCAGGG 58.271 34.615 9.83 0.00 0.00 4.45
5143 7931 2.673368 CGTGATCTACCAAGAAACAGCC 59.327 50.000 0.00 0.00 34.73 4.85
5551 8352 6.154706 TCAAAAGAATCCTAGTAGAGTCCCAC 59.845 42.308 0.00 0.00 31.25 4.61
5555 8356 6.154706 TGGGTCAAAAGAATCCTAGTAGAGTC 59.845 42.308 0.00 0.00 0.00 3.36
5599 8400 2.225727 GGTTCAGGACATCAACCGTTTC 59.774 50.000 0.00 0.00 30.63 2.78
5605 8406 3.004734 CCAGTTTGGTTCAGGACATCAAC 59.995 47.826 0.00 0.00 31.35 3.18
5667 8468 3.969553 ACACATGTCTAGTCTAGGCTCA 58.030 45.455 12.62 7.65 0.00 4.26
5678 8479 1.616374 TCAGTCGGCAACACATGTCTA 59.384 47.619 0.00 0.00 0.00 2.59
5679 8480 0.392706 TCAGTCGGCAACACATGTCT 59.607 50.000 0.00 0.00 0.00 3.41
5681 8482 1.442769 GATCAGTCGGCAACACATGT 58.557 50.000 0.00 0.00 0.00 3.21
5682 8483 0.729116 GGATCAGTCGGCAACACATG 59.271 55.000 0.00 0.00 0.00 3.21
5683 8484 0.324614 TGGATCAGTCGGCAACACAT 59.675 50.000 0.00 0.00 0.00 3.21
5740 8541 2.780010 AGTGGATTCCCATTCTCCGATT 59.220 45.455 0.00 0.00 45.68 3.34
5743 8544 1.486310 TCAGTGGATTCCCATTCTCCG 59.514 52.381 0.00 0.00 45.68 4.63
5753 8554 7.695618 CGAAAATGAAAAGAGATCAGTGGATTC 59.304 37.037 0.00 0.00 32.67 2.52
5768 8569 4.664150 AACCAAGAGGCGAAAATGAAAA 57.336 36.364 0.00 0.00 39.06 2.29
5773 8574 2.035832 CACCAAACCAAGAGGCGAAAAT 59.964 45.455 0.00 0.00 39.06 1.82
5792 8593 1.875963 CACGGGACAATCCTTGCAC 59.124 57.895 0.00 0.00 36.57 4.57
5848 8649 4.057428 GAGCACCGAGACGTGGCT 62.057 66.667 0.00 0.00 37.13 4.75
5865 8674 0.232303 GCTCAGGACAAACGACAACG 59.768 55.000 0.00 0.00 45.75 4.10
5931 8740 1.104630 ACGATCCTCTCCCGTTTCTC 58.895 55.000 0.00 0.00 32.03 2.87
5951 8760 3.316283 GAAGCATCTGATGTCGATCTCC 58.684 50.000 18.19 0.15 0.00 3.71
6002 8812 2.026734 CGATCGGATCACTGCGCT 59.973 61.111 17.53 0.00 35.99 5.92
6023 8833 3.807538 GCCACCTGCTGCGATGTG 61.808 66.667 8.48 8.48 36.87 3.21
6032 8842 2.985847 GTTCCACTGGCCACCTGC 60.986 66.667 0.00 0.00 40.16 4.85
6033 8843 1.601759 CTGTTCCACTGGCCACCTG 60.602 63.158 0.00 0.00 0.00 4.00
6034 8844 1.352622 TTCTGTTCCACTGGCCACCT 61.353 55.000 0.00 0.00 0.00 4.00
6151 8965 2.404215 ACGTAGCACTGTACAGCTTTG 58.596 47.619 22.90 14.45 42.05 2.77
6181 8995 7.909267 TCGTCAGTTGAAGATAAATAAGCATG 58.091 34.615 0.00 0.00 0.00 4.06
6200 9014 4.917998 CGGATGGTGTAATCTAATCGTCAG 59.082 45.833 0.00 0.00 0.00 3.51
6224 9038 3.437049 GGCACTCCATTTCTTGACACTAC 59.563 47.826 0.00 0.00 0.00 2.73
6452 9266 3.760035 CTGAGGGACCCGTCGGTG 61.760 72.222 11.06 4.33 44.88 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.