Multiple sequence alignment - TraesCS4A01G048600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G048600 | chr4A | 100.000 | 3213 | 0 | 0 | 1 | 3213 | 39462075 | 39465287 | 0.000000e+00 | 5934.0 |
1 | TraesCS4A01G048600 | chr4A | 100.000 | 28 | 0 | 0 | 2181 | 2208 | 738811732 | 738811759 | 6.000000e-03 | 52.8 |
2 | TraesCS4A01G048600 | chr4B | 92.331 | 1343 | 66 | 16 | 841 | 2170 | 520935114 | 520933796 | 0.000000e+00 | 1875.0 |
3 | TraesCS4A01G048600 | chr4B | 94.305 | 878 | 48 | 1 | 2338 | 3213 | 520933346 | 520932469 | 0.000000e+00 | 1343.0 |
4 | TraesCS4A01G048600 | chr4B | 88.710 | 186 | 8 | 4 | 2166 | 2340 | 520933623 | 520933440 | 6.980000e-52 | 215.0 |
5 | TraesCS4A01G048600 | chr4B | 87.719 | 57 | 7 | 0 | 723 | 779 | 117194486 | 117194430 | 2.070000e-07 | 67.6 |
6 | TraesCS4A01G048600 | chr4D | 93.569 | 1244 | 66 | 9 | 928 | 2170 | 425283613 | 425282383 | 0.000000e+00 | 1842.0 |
7 | TraesCS4A01G048600 | chr4D | 95.427 | 1006 | 44 | 2 | 2208 | 3213 | 425280975 | 425279972 | 0.000000e+00 | 1602.0 |
8 | TraesCS4A01G048600 | chr4D | 82.576 | 396 | 27 | 14 | 255 | 618 | 425284988 | 425284603 | 8.660000e-81 | 311.0 |
9 | TraesCS4A01G048600 | chr4D | 85.405 | 185 | 16 | 8 | 1 | 184 | 54673489 | 54673663 | 7.080000e-42 | 182.0 |
10 | TraesCS4A01G048600 | chr4D | 96.610 | 59 | 2 | 0 | 841 | 899 | 425284001 | 425283943 | 7.340000e-17 | 99.0 |
11 | TraesCS4A01G048600 | chr4D | 96.875 | 32 | 0 | 1 | 718 | 749 | 476309368 | 476309398 | 6.000000e-03 | 52.8 |
12 | TraesCS4A01G048600 | chr6D | 89.796 | 196 | 16 | 2 | 1 | 196 | 292078872 | 292079063 | 6.880000e-62 | 248.0 |
13 | TraesCS4A01G048600 | chr6A | 89.583 | 192 | 14 | 5 | 1 | 192 | 113535440 | 113535625 | 4.140000e-59 | 239.0 |
14 | TraesCS4A01G048600 | chr6A | 77.509 | 289 | 38 | 11 | 316 | 579 | 504476031 | 504475745 | 7.180000e-32 | 148.0 |
15 | TraesCS4A01G048600 | chr5D | 87.500 | 200 | 20 | 4 | 1 | 199 | 276265568 | 276265373 | 3.230000e-55 | 226.0 |
16 | TraesCS4A01G048600 | chr5D | 91.489 | 47 | 4 | 0 | 722 | 768 | 469466546 | 469466592 | 7.440000e-07 | 65.8 |
17 | TraesCS4A01G048600 | chr7D | 85.930 | 199 | 22 | 4 | 1 | 198 | 633593526 | 633593333 | 1.170000e-49 | 207.0 |
18 | TraesCS4A01G048600 | chr7D | 87.395 | 119 | 12 | 3 | 467 | 584 | 64181092 | 64181208 | 2.010000e-27 | 134.0 |
19 | TraesCS4A01G048600 | chr7D | 100.000 | 28 | 0 | 0 | 2181 | 2208 | 4870857 | 4870884 | 6.000000e-03 | 52.8 |
20 | TraesCS4A01G048600 | chr1D | 85.859 | 198 | 21 | 4 | 1 | 198 | 399159011 | 399158821 | 1.510000e-48 | 204.0 |
21 | TraesCS4A01G048600 | chr2A | 80.756 | 291 | 28 | 11 | 302 | 566 | 12328378 | 12328090 | 5.440000e-48 | 202.0 |
22 | TraesCS4A01G048600 | chr2A | 79.252 | 294 | 28 | 22 | 302 | 566 | 12329159 | 12328870 | 1.180000e-39 | 174.0 |
23 | TraesCS4A01G048600 | chr2A | 81.421 | 183 | 24 | 9 | 19 | 199 | 738967296 | 738967122 | 1.200000e-29 | 141.0 |
24 | TraesCS4A01G048600 | chr3B | 83.756 | 197 | 25 | 5 | 4 | 200 | 421011893 | 421012082 | 2.550000e-41 | 180.0 |
25 | TraesCS4A01G048600 | chr2D | 79.038 | 291 | 31 | 19 | 302 | 566 | 11844092 | 11843806 | 4.260000e-39 | 172.0 |
26 | TraesCS4A01G048600 | chr2D | 76.699 | 309 | 44 | 15 | 302 | 585 | 526115465 | 526115160 | 2.580000e-31 | 147.0 |
27 | TraesCS4A01G048600 | chr2D | 90.741 | 54 | 5 | 0 | 722 | 775 | 119282423 | 119282370 | 4.450000e-09 | 73.1 |
28 | TraesCS4A01G048600 | chr2B | 85.294 | 170 | 18 | 6 | 4 | 172 | 10415475 | 10415312 | 5.510000e-38 | 169.0 |
29 | TraesCS4A01G048600 | chr5B | 86.066 | 122 | 14 | 3 | 467 | 587 | 708334841 | 708334960 | 9.360000e-26 | 128.0 |
30 | TraesCS4A01G048600 | chr5B | 74.754 | 305 | 51 | 16 | 299 | 579 | 376392414 | 376392716 | 2.620000e-21 | 113.0 |
31 | TraesCS4A01G048600 | chr7B | 93.182 | 44 | 3 | 0 | 2165 | 2208 | 623563658 | 623563615 | 7.440000e-07 | 65.8 |
32 | TraesCS4A01G048600 | chr7B | 97.222 | 36 | 1 | 0 | 2173 | 2208 | 623502422 | 623502387 | 9.620000e-06 | 62.1 |
33 | TraesCS4A01G048600 | chr7B | 97.222 | 36 | 1 | 0 | 2173 | 2208 | 623520299 | 623520264 | 9.620000e-06 | 62.1 |
34 | TraesCS4A01G048600 | chr7B | 97.222 | 36 | 1 | 0 | 2173 | 2208 | 623534966 | 623534931 | 9.620000e-06 | 62.1 |
35 | TraesCS4A01G048600 | chr5A | 97.059 | 34 | 1 | 0 | 554 | 587 | 281060944 | 281060977 | 1.240000e-04 | 58.4 |
36 | TraesCS4A01G048600 | chr7A | 100.000 | 28 | 0 | 0 | 723 | 750 | 94304271 | 94304244 | 6.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G048600 | chr4A | 39462075 | 39465287 | 3212 | False | 5934.000000 | 5934 | 100.0000 | 1 | 3213 | 1 | chr4A.!!$F1 | 3212 |
1 | TraesCS4A01G048600 | chr4B | 520932469 | 520935114 | 2645 | True | 1144.333333 | 1875 | 91.7820 | 841 | 3213 | 3 | chr4B.!!$R2 | 2372 |
2 | TraesCS4A01G048600 | chr4D | 425279972 | 425284988 | 5016 | True | 963.500000 | 1842 | 92.0455 | 255 | 3213 | 4 | chr4D.!!$R1 | 2958 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
218 | 219 | 0.032615 | CTAGGGTGGTGCTCTCCTCT | 60.033 | 60.0 | 0.0 | 0.0 | 0.0 | 3.69 | F |
219 | 220 | 0.033011 | TAGGGTGGTGCTCTCCTCTC | 60.033 | 60.0 | 0.0 | 0.0 | 0.0 | 3.20 | F |
1740 | 2570 | 0.181350 | GTCAGCCCCTCCGATGATTT | 59.819 | 55.0 | 0.0 | 0.0 | 0.0 | 2.17 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1844 | 2674 | 0.674895 | GATGCCAGCACCTCGTTCTT | 60.675 | 55.000 | 0.00 | 0.0 | 0.0 | 2.52 | R |
2036 | 2866 | 1.207329 | GACACGGTGGGAGCTAGAATT | 59.793 | 52.381 | 13.48 | 0.0 | 0.0 | 2.17 | R |
2829 | 5307 | 1.280457 | GCCTTCCCTCTCCTCTTTGA | 58.720 | 55.000 | 0.00 | 0.0 | 0.0 | 2.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 3.924507 | GCCGAATCAATGCCCTGT | 58.075 | 55.556 | 0.00 | 0.00 | 0.00 | 4.00 |
18 | 19 | 2.192605 | GCCGAATCAATGCCCTGTT | 58.807 | 52.632 | 0.00 | 0.00 | 0.00 | 3.16 |
19 | 20 | 0.532115 | GCCGAATCAATGCCCTGTTT | 59.468 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
20 | 21 | 1.066929 | GCCGAATCAATGCCCTGTTTT | 60.067 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
21 | 22 | 2.609350 | CCGAATCAATGCCCTGTTTTG | 58.391 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
22 | 23 | 1.994779 | CGAATCAATGCCCTGTTTTGC | 59.005 | 47.619 | 0.00 | 0.00 | 0.00 | 3.68 |
23 | 24 | 2.349590 | GAATCAATGCCCTGTTTTGCC | 58.650 | 47.619 | 0.00 | 0.00 | 0.00 | 4.52 |
24 | 25 | 0.247185 | ATCAATGCCCTGTTTTGCCG | 59.753 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
25 | 26 | 0.825425 | TCAATGCCCTGTTTTGCCGA | 60.825 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
26 | 27 | 0.033228 | CAATGCCCTGTTTTGCCGAA | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
27 | 28 | 0.975887 | AATGCCCTGTTTTGCCGAAT | 59.024 | 45.000 | 0.00 | 0.00 | 0.00 | 3.34 |
28 | 29 | 0.975887 | ATGCCCTGTTTTGCCGAATT | 59.024 | 45.000 | 0.00 | 0.00 | 0.00 | 2.17 |
29 | 30 | 0.755686 | TGCCCTGTTTTGCCGAATTT | 59.244 | 45.000 | 0.00 | 0.00 | 0.00 | 1.82 |
30 | 31 | 1.139853 | TGCCCTGTTTTGCCGAATTTT | 59.860 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
31 | 32 | 1.530720 | GCCCTGTTTTGCCGAATTTTG | 59.469 | 47.619 | 0.00 | 0.00 | 0.00 | 2.44 |
32 | 33 | 2.804933 | GCCCTGTTTTGCCGAATTTTGA | 60.805 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
33 | 34 | 2.799978 | CCCTGTTTTGCCGAATTTTGAC | 59.200 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
34 | 35 | 2.799978 | CCTGTTTTGCCGAATTTTGACC | 59.200 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
35 | 36 | 2.464865 | TGTTTTGCCGAATTTTGACCG | 58.535 | 42.857 | 0.00 | 0.00 | 0.00 | 4.79 |
36 | 37 | 2.099263 | TGTTTTGCCGAATTTTGACCGA | 59.901 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
37 | 38 | 3.117046 | GTTTTGCCGAATTTTGACCGAA | 58.883 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
38 | 39 | 3.651803 | TTTGCCGAATTTTGACCGAAT | 57.348 | 38.095 | 0.00 | 0.00 | 0.00 | 3.34 |
39 | 40 | 4.768130 | TTTGCCGAATTTTGACCGAATA | 57.232 | 36.364 | 0.00 | 0.00 | 0.00 | 1.75 |
40 | 41 | 4.974368 | TTGCCGAATTTTGACCGAATAT | 57.026 | 36.364 | 0.00 | 0.00 | 0.00 | 1.28 |
41 | 42 | 4.545823 | TGCCGAATTTTGACCGAATATC | 57.454 | 40.909 | 0.00 | 0.00 | 0.00 | 1.63 |
42 | 43 | 3.942115 | TGCCGAATTTTGACCGAATATCA | 59.058 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
43 | 44 | 4.578516 | TGCCGAATTTTGACCGAATATCAT | 59.421 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
44 | 45 | 5.067153 | TGCCGAATTTTGACCGAATATCATT | 59.933 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
45 | 46 | 5.977129 | GCCGAATTTTGACCGAATATCATTT | 59.023 | 36.000 | 0.00 | 0.00 | 0.00 | 2.32 |
46 | 47 | 6.475402 | GCCGAATTTTGACCGAATATCATTTT | 59.525 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
47 | 48 | 7.305993 | GCCGAATTTTGACCGAATATCATTTTC | 60.306 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
48 | 49 | 7.700234 | CCGAATTTTGACCGAATATCATTTTCA | 59.300 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
49 | 50 | 9.071221 | CGAATTTTGACCGAATATCATTTTCAA | 57.929 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
54 | 55 | 9.703892 | TTTGACCGAATATCATTTTCAAAATGT | 57.296 | 25.926 | 20.03 | 11.46 | 30.60 | 2.71 |
55 | 56 | 9.703892 | TTGACCGAATATCATTTTCAAAATGTT | 57.296 | 25.926 | 20.03 | 15.15 | 0.00 | 2.71 |
56 | 57 | 9.703892 | TGACCGAATATCATTTTCAAAATGTTT | 57.296 | 25.926 | 20.03 | 13.15 | 0.00 | 2.83 |
75 | 76 | 4.821935 | AAAAAGGGCGTCTGAGGG | 57.178 | 55.556 | 0.00 | 0.00 | 0.00 | 4.30 |
76 | 77 | 1.603739 | AAAAAGGGCGTCTGAGGGC | 60.604 | 57.895 | 14.65 | 14.65 | 0.00 | 5.19 |
77 | 78 | 3.901797 | AAAAGGGCGTCTGAGGGCG | 62.902 | 63.158 | 16.14 | 0.05 | 0.00 | 6.13 |
105 | 106 | 4.785453 | CGGCAGAGGCTGGGAACC | 62.785 | 72.222 | 0.00 | 0.00 | 42.93 | 3.62 |
106 | 107 | 4.432741 | GGCAGAGGCTGGGAACCC | 62.433 | 72.222 | 2.46 | 2.46 | 43.21 | 4.11 |
117 | 118 | 3.467226 | GGAACCCGATCGCCTCCA | 61.467 | 66.667 | 10.32 | 0.00 | 0.00 | 3.86 |
118 | 119 | 2.202892 | GAACCCGATCGCCTCCAC | 60.203 | 66.667 | 10.32 | 0.00 | 0.00 | 4.02 |
119 | 120 | 4.143333 | AACCCGATCGCCTCCACG | 62.143 | 66.667 | 10.32 | 0.00 | 0.00 | 4.94 |
131 | 132 | 2.755836 | CCTCCACGGCAAAAATATCG | 57.244 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
132 | 133 | 1.268539 | CCTCCACGGCAAAAATATCGC | 60.269 | 52.381 | 0.00 | 0.00 | 0.00 | 4.58 |
133 | 134 | 1.670811 | CTCCACGGCAAAAATATCGCT | 59.329 | 47.619 | 0.00 | 0.00 | 0.00 | 4.93 |
134 | 135 | 1.400142 | TCCACGGCAAAAATATCGCTG | 59.600 | 47.619 | 0.00 | 0.00 | 38.04 | 5.18 |
135 | 136 | 1.533756 | CCACGGCAAAAATATCGCTGG | 60.534 | 52.381 | 0.00 | 0.00 | 36.31 | 4.85 |
136 | 137 | 1.132262 | CACGGCAAAAATATCGCTGGT | 59.868 | 47.619 | 0.00 | 0.00 | 36.31 | 4.00 |
137 | 138 | 1.816224 | ACGGCAAAAATATCGCTGGTT | 59.184 | 42.857 | 0.00 | 0.00 | 36.31 | 3.67 |
138 | 139 | 2.159435 | ACGGCAAAAATATCGCTGGTTC | 60.159 | 45.455 | 0.00 | 0.00 | 36.31 | 3.62 |
139 | 140 | 2.450160 | GGCAAAAATATCGCTGGTTCG | 58.550 | 47.619 | 0.00 | 0.00 | 0.00 | 3.95 |
140 | 141 | 1.846175 | GCAAAAATATCGCTGGTTCGC | 59.154 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
141 | 142 | 2.450160 | CAAAAATATCGCTGGTTCGCC | 58.550 | 47.619 | 0.00 | 0.00 | 37.92 | 5.54 |
142 | 143 | 1.021968 | AAAATATCGCTGGTTCGCCC | 58.978 | 50.000 | 0.00 | 0.00 | 36.08 | 6.13 |
143 | 144 | 0.818040 | AAATATCGCTGGTTCGCCCC | 60.818 | 55.000 | 0.00 | 0.00 | 36.08 | 5.80 |
144 | 145 | 2.676163 | AATATCGCTGGTTCGCCCCC | 62.676 | 60.000 | 0.00 | 0.00 | 36.08 | 5.40 |
163 | 164 | 3.178539 | AGCGGCGCTTTTTCTAGC | 58.821 | 55.556 | 31.35 | 0.00 | 33.89 | 3.42 |
164 | 165 | 2.100410 | GCGGCGCTTTTTCTAGCC | 59.900 | 61.111 | 26.86 | 0.00 | 45.67 | 3.93 |
165 | 166 | 2.791927 | CGGCGCTTTTTCTAGCCC | 59.208 | 61.111 | 7.64 | 0.00 | 46.36 | 5.19 |
166 | 167 | 2.761195 | CGGCGCTTTTTCTAGCCCC | 61.761 | 63.158 | 7.64 | 0.00 | 46.36 | 5.80 |
167 | 168 | 1.378646 | GGCGCTTTTTCTAGCCCCT | 60.379 | 57.895 | 7.64 | 0.00 | 43.54 | 4.79 |
168 | 169 | 0.965866 | GGCGCTTTTTCTAGCCCCTT | 60.966 | 55.000 | 7.64 | 0.00 | 43.54 | 3.95 |
169 | 170 | 0.171231 | GCGCTTTTTCTAGCCCCTTG | 59.829 | 55.000 | 0.00 | 0.00 | 37.90 | 3.61 |
170 | 171 | 0.811281 | CGCTTTTTCTAGCCCCTTGG | 59.189 | 55.000 | 0.00 | 0.00 | 37.90 | 3.61 |
172 | 173 | 1.852633 | CTTTTTCTAGCCCCTTGGGG | 58.147 | 55.000 | 20.18 | 20.18 | 44.57 | 4.96 |
195 | 196 | 3.746957 | GGGGGCTGGAGATGTTCT | 58.253 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
196 | 197 | 2.930935 | GGGGGCTGGAGATGTTCTA | 58.069 | 57.895 | 0.00 | 0.00 | 0.00 | 2.10 |
197 | 198 | 1.213296 | GGGGGCTGGAGATGTTCTAA | 58.787 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
198 | 199 | 1.141858 | GGGGGCTGGAGATGTTCTAAG | 59.858 | 57.143 | 0.00 | 0.00 | 0.00 | 2.18 |
199 | 200 | 1.475930 | GGGGCTGGAGATGTTCTAAGC | 60.476 | 57.143 | 4.04 | 4.04 | 35.81 | 3.09 |
200 | 201 | 1.488393 | GGGCTGGAGATGTTCTAAGCT | 59.512 | 52.381 | 10.01 | 0.00 | 36.40 | 3.74 |
201 | 202 | 2.700897 | GGGCTGGAGATGTTCTAAGCTA | 59.299 | 50.000 | 10.01 | 0.00 | 36.40 | 3.32 |
202 | 203 | 3.244044 | GGGCTGGAGATGTTCTAAGCTAG | 60.244 | 52.174 | 10.01 | 0.00 | 36.40 | 3.42 |
203 | 204 | 3.244044 | GGCTGGAGATGTTCTAAGCTAGG | 60.244 | 52.174 | 10.01 | 0.00 | 36.40 | 3.02 |
204 | 205 | 3.244044 | GCTGGAGATGTTCTAAGCTAGGG | 60.244 | 52.174 | 0.00 | 0.00 | 34.59 | 3.53 |
205 | 206 | 3.964031 | CTGGAGATGTTCTAAGCTAGGGT | 59.036 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
206 | 207 | 3.706594 | TGGAGATGTTCTAAGCTAGGGTG | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 4.61 |
207 | 208 | 3.070302 | GGAGATGTTCTAAGCTAGGGTGG | 59.930 | 52.174 | 0.00 | 0.00 | 0.00 | 4.61 |
208 | 209 | 3.707102 | GAGATGTTCTAAGCTAGGGTGGT | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
209 | 210 | 3.452627 | AGATGTTCTAAGCTAGGGTGGTG | 59.547 | 47.826 | 0.00 | 0.00 | 0.00 | 4.17 |
210 | 211 | 1.278127 | TGTTCTAAGCTAGGGTGGTGC | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
211 | 212 | 1.555533 | GTTCTAAGCTAGGGTGGTGCT | 59.444 | 52.381 | 0.00 | 0.00 | 38.87 | 4.40 |
212 | 213 | 1.486211 | TCTAAGCTAGGGTGGTGCTC | 58.514 | 55.000 | 0.00 | 0.00 | 35.85 | 4.26 |
213 | 214 | 1.007238 | TCTAAGCTAGGGTGGTGCTCT | 59.993 | 52.381 | 0.00 | 0.00 | 35.85 | 4.09 |
214 | 215 | 1.410882 | CTAAGCTAGGGTGGTGCTCTC | 59.589 | 57.143 | 0.00 | 0.00 | 35.85 | 3.20 |
215 | 216 | 1.268283 | AAGCTAGGGTGGTGCTCTCC | 61.268 | 60.000 | 0.00 | 0.00 | 35.85 | 3.71 |
216 | 217 | 1.687493 | GCTAGGGTGGTGCTCTCCT | 60.687 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
217 | 218 | 1.681486 | GCTAGGGTGGTGCTCTCCTC | 61.681 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
218 | 219 | 0.032615 | CTAGGGTGGTGCTCTCCTCT | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
219 | 220 | 0.033011 | TAGGGTGGTGCTCTCCTCTC | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
220 | 221 | 2.363172 | GGGTGGTGCTCTCCTCTCC | 61.363 | 68.421 | 0.00 | 0.00 | 0.00 | 3.71 |
221 | 222 | 1.305718 | GGTGGTGCTCTCCTCTCCT | 60.306 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
222 | 223 | 0.907230 | GGTGGTGCTCTCCTCTCCTT | 60.907 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
223 | 224 | 0.980423 | GTGGTGCTCTCCTCTCCTTT | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
224 | 225 | 1.349357 | GTGGTGCTCTCCTCTCCTTTT | 59.651 | 52.381 | 0.00 | 0.00 | 0.00 | 2.27 |
225 | 226 | 2.057922 | TGGTGCTCTCCTCTCCTTTTT | 58.942 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
246 | 247 | 6.737254 | TTTTCCTGCTTTTATTACGAGGAG | 57.263 | 37.500 | 0.00 | 0.00 | 31.34 | 3.69 |
247 | 248 | 4.402056 | TCCTGCTTTTATTACGAGGAGG | 57.598 | 45.455 | 4.03 | 4.03 | 46.71 | 4.30 |
248 | 249 | 3.134081 | TCCTGCTTTTATTACGAGGAGGG | 59.866 | 47.826 | 9.74 | 0.00 | 45.76 | 4.30 |
249 | 250 | 3.134081 | CCTGCTTTTATTACGAGGAGGGA | 59.866 | 47.826 | 2.60 | 0.00 | 43.07 | 4.20 |
250 | 251 | 4.202367 | CCTGCTTTTATTACGAGGAGGGAT | 60.202 | 45.833 | 2.60 | 0.00 | 43.07 | 3.85 |
251 | 252 | 4.703897 | TGCTTTTATTACGAGGAGGGATG | 58.296 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
252 | 253 | 3.498777 | GCTTTTATTACGAGGAGGGATGC | 59.501 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
253 | 254 | 4.703897 | CTTTTATTACGAGGAGGGATGCA | 58.296 | 43.478 | 0.00 | 0.00 | 0.00 | 3.96 |
262 | 263 | 2.621998 | GAGGAGGGATGCATGTCATTTG | 59.378 | 50.000 | 2.46 | 0.00 | 35.05 | 2.32 |
301 | 302 | 7.885297 | CATGAGGTGGACAAAGAGAATTTTTA | 58.115 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
305 | 306 | 5.470368 | GTGGACAAAGAGAATTTTTAGGGC | 58.530 | 41.667 | 0.00 | 0.00 | 0.00 | 5.19 |
312 | 313 | 7.728532 | ACAAAGAGAATTTTTAGGGCTCCTTTA | 59.271 | 33.333 | 0.00 | 0.00 | 34.61 | 1.85 |
351 | 352 | 8.792830 | TTGTAGAACTTTGGAGGATTAGAATG | 57.207 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
358 | 359 | 7.633789 | ACTTTGGAGGATTAGAATGCTTAGAA | 58.366 | 34.615 | 0.00 | 0.00 | 37.20 | 2.10 |
360 | 361 | 9.129532 | CTTTGGAGGATTAGAATGCTTAGAAAT | 57.870 | 33.333 | 0.00 | 0.00 | 37.20 | 2.17 |
361 | 362 | 9.479549 | TTTGGAGGATTAGAATGCTTAGAAATT | 57.520 | 29.630 | 0.00 | 0.00 | 37.20 | 1.82 |
362 | 363 | 9.479549 | TTGGAGGATTAGAATGCTTAGAAATTT | 57.520 | 29.630 | 0.00 | 0.00 | 37.20 | 1.82 |
401 | 410 | 9.551734 | TTCATAGGACTGAATCACATAGAAATG | 57.448 | 33.333 | 0.00 | 0.00 | 33.40 | 2.32 |
403 | 412 | 8.986847 | CATAGGACTGAATCACATAGAAATGTC | 58.013 | 37.037 | 0.00 | 0.00 | 44.70 | 3.06 |
404 | 413 | 7.192852 | AGGACTGAATCACATAGAAATGTCT | 57.807 | 36.000 | 0.00 | 0.00 | 44.70 | 3.41 |
405 | 414 | 7.271511 | AGGACTGAATCACATAGAAATGTCTC | 58.728 | 38.462 | 0.00 | 0.00 | 44.70 | 3.36 |
406 | 415 | 6.481644 | GGACTGAATCACATAGAAATGTCTCC | 59.518 | 42.308 | 0.00 | 0.00 | 44.70 | 3.71 |
407 | 416 | 7.192852 | ACTGAATCACATAGAAATGTCTCCT | 57.807 | 36.000 | 0.00 | 0.00 | 44.70 | 3.69 |
408 | 417 | 8.311395 | ACTGAATCACATAGAAATGTCTCCTA | 57.689 | 34.615 | 0.00 | 0.00 | 44.70 | 2.94 |
409 | 418 | 8.762645 | ACTGAATCACATAGAAATGTCTCCTAA | 58.237 | 33.333 | 0.00 | 0.00 | 44.70 | 2.69 |
410 | 419 | 9.258826 | CTGAATCACATAGAAATGTCTCCTAAG | 57.741 | 37.037 | 0.00 | 0.00 | 44.70 | 2.18 |
411 | 420 | 8.206867 | TGAATCACATAGAAATGTCTCCTAAGG | 58.793 | 37.037 | 0.00 | 0.00 | 44.70 | 2.69 |
426 | 435 | 9.268282 | TGTCTCCTAAGGATTTCTTTGTACTAT | 57.732 | 33.333 | 0.00 | 0.00 | 36.93 | 2.12 |
458 | 467 | 4.702131 | GGATTTGTAGCATCCACTCAAACT | 59.298 | 41.667 | 0.00 | 0.00 | 40.21 | 2.66 |
460 | 469 | 5.437289 | TTTGTAGCATCCACTCAAACTTG | 57.563 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
469 | 492 | 5.083533 | TCCACTCAAACTTGTTGCATTTT | 57.916 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
518 | 541 | 6.631763 | ATCATGTAGGATTGAGATGGCATA | 57.368 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
519 | 542 | 6.631763 | TCATGTAGGATTGAGATGGCATAT | 57.368 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
521 | 544 | 6.214005 | TCATGTAGGATTGAGATGGCATATCA | 59.786 | 38.462 | 20.13 | 20.13 | 0.00 | 2.15 |
541 | 564 | 9.976511 | CATATCATGCCAATTCTATGTTTTTCT | 57.023 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
585 | 618 | 3.137176 | CCTATGAATCAAAGAGGCCCTCA | 59.863 | 47.826 | 14.46 | 0.00 | 32.06 | 3.86 |
596 | 629 | 1.215382 | GGCCCTCAAATCAAACGGC | 59.785 | 57.895 | 0.00 | 0.00 | 35.60 | 5.68 |
614 | 647 | 3.243569 | ACGGCCAGAAAGAAGATAGATCG | 60.244 | 47.826 | 2.24 | 0.00 | 0.00 | 3.69 |
618 | 651 | 4.739137 | GCCAGAAAGAAGATAGATCGTGCT | 60.739 | 45.833 | 0.00 | 0.00 | 0.00 | 4.40 |
622 | 1120 | 5.534654 | AGAAAGAAGATAGATCGTGCTAGCT | 59.465 | 40.000 | 17.23 | 0.00 | 38.65 | 3.32 |
644 | 1142 | 5.183522 | GCTATAGTAGAACTAGTGGCCGAAT | 59.816 | 44.000 | 0.00 | 0.00 | 33.66 | 3.34 |
664 | 1162 | 4.789012 | ATTGTTGTATGGCTTGGTTCTG | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
673 | 1171 | 1.145803 | GCTTGGTTCTGTACACGACC | 58.854 | 55.000 | 13.57 | 13.57 | 0.00 | 4.79 |
699 | 1197 | 3.135225 | CGTGGAACAATGTAGTGTGGAA | 58.865 | 45.455 | 0.00 | 0.00 | 44.16 | 3.53 |
701 | 1199 | 3.502211 | GTGGAACAATGTAGTGTGGAAGG | 59.498 | 47.826 | 0.00 | 0.00 | 44.16 | 3.46 |
719 | 1217 | 1.294780 | GTAGCACTGCTGCCTGAGT | 59.705 | 57.895 | 14.15 | 0.00 | 45.53 | 3.41 |
725 | 1223 | 2.419297 | GCACTGCTGCCTGAGTAATACT | 60.419 | 50.000 | 0.00 | 0.00 | 37.45 | 2.12 |
726 | 1224 | 3.866651 | CACTGCTGCCTGAGTAATACTT | 58.133 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
727 | 1225 | 3.868077 | CACTGCTGCCTGAGTAATACTTC | 59.132 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
728 | 1226 | 3.118592 | ACTGCTGCCTGAGTAATACTTCC | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
729 | 1227 | 3.107601 | TGCTGCCTGAGTAATACTTCCT | 58.892 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
730 | 1228 | 3.133003 | TGCTGCCTGAGTAATACTTCCTC | 59.867 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
731 | 1229 | 3.386402 | GCTGCCTGAGTAATACTTCCTCT | 59.614 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
732 | 1230 | 4.739137 | GCTGCCTGAGTAATACTTCCTCTG | 60.739 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
733 | 1231 | 4.353777 | TGCCTGAGTAATACTTCCTCTGT | 58.646 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
734 | 1232 | 4.777896 | TGCCTGAGTAATACTTCCTCTGTT | 59.222 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
735 | 1233 | 5.248477 | TGCCTGAGTAATACTTCCTCTGTTT | 59.752 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
736 | 1234 | 5.813157 | GCCTGAGTAATACTTCCTCTGTTTC | 59.187 | 44.000 | 0.00 | 0.00 | 0.00 | 2.78 |
737 | 1235 | 6.574465 | GCCTGAGTAATACTTCCTCTGTTTCA | 60.574 | 42.308 | 0.00 | 0.00 | 0.00 | 2.69 |
738 | 1236 | 7.386851 | CCTGAGTAATACTTCCTCTGTTTCAA | 58.613 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
739 | 1237 | 7.878127 | CCTGAGTAATACTTCCTCTGTTTCAAA | 59.122 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
740 | 1238 | 9.273016 | CTGAGTAATACTTCCTCTGTTTCAAAA | 57.727 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
741 | 1239 | 9.793259 | TGAGTAATACTTCCTCTGTTTCAAAAT | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
748 | 1246 | 8.329203 | ACTTCCTCTGTTTCAAAATAGATGAC | 57.671 | 34.615 | 6.69 | 0.00 | 35.92 | 3.06 |
749 | 1247 | 7.391833 | ACTTCCTCTGTTTCAAAATAGATGACC | 59.608 | 37.037 | 6.69 | 0.00 | 35.92 | 4.02 |
750 | 1248 | 7.020827 | TCCTCTGTTTCAAAATAGATGACCT | 57.979 | 36.000 | 2.91 | 0.00 | 35.92 | 3.85 |
751 | 1249 | 7.461749 | TCCTCTGTTTCAAAATAGATGACCTT | 58.538 | 34.615 | 2.91 | 0.00 | 35.92 | 3.50 |
752 | 1250 | 8.602424 | TCCTCTGTTTCAAAATAGATGACCTTA | 58.398 | 33.333 | 2.91 | 0.00 | 35.92 | 2.69 |
753 | 1251 | 9.401058 | CCTCTGTTTCAAAATAGATGACCTTAT | 57.599 | 33.333 | 2.91 | 0.00 | 35.92 | 1.73 |
832 | 1330 | 7.739498 | TGAAAGGAGTACAAAGTATTTCACC | 57.261 | 36.000 | 0.00 | 0.00 | 35.03 | 4.02 |
833 | 1331 | 7.284074 | TGAAAGGAGTACAAAGTATTTCACCA | 58.716 | 34.615 | 0.00 | 0.00 | 35.03 | 4.17 |
836 | 1334 | 8.528044 | AAGGAGTACAAAGTATTTCACCAAAA | 57.472 | 30.769 | 0.00 | 0.00 | 35.03 | 2.44 |
913 | 1733 | 0.671251 | GGTGCAAACCGAACCAATCA | 59.329 | 50.000 | 0.00 | 0.00 | 33.94 | 2.57 |
914 | 1734 | 1.067821 | GGTGCAAACCGAACCAATCAA | 59.932 | 47.619 | 0.00 | 0.00 | 33.94 | 2.57 |
915 | 1735 | 2.288763 | GGTGCAAACCGAACCAATCAAT | 60.289 | 45.455 | 0.00 | 0.00 | 33.94 | 2.57 |
916 | 1736 | 2.986479 | GTGCAAACCGAACCAATCAATC | 59.014 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
917 | 1737 | 2.029470 | TGCAAACCGAACCAATCAATCC | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
918 | 1738 | 2.673893 | GCAAACCGAACCAATCAATCCC | 60.674 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
919 | 1739 | 1.847328 | AACCGAACCAATCAATCCCC | 58.153 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
920 | 1740 | 0.999712 | ACCGAACCAATCAATCCCCT | 59.000 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
921 | 1741 | 1.340991 | ACCGAACCAATCAATCCCCTG | 60.341 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
922 | 1742 | 1.064758 | CCGAACCAATCAATCCCCTGA | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
923 | 1743 | 2.620367 | CCGAACCAATCAATCCCCTGAA | 60.620 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
924 | 1744 | 2.423538 | CGAACCAATCAATCCCCTGAAC | 59.576 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
925 | 1745 | 3.430453 | GAACCAATCAATCCCCTGAACA | 58.570 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
926 | 1746 | 3.091633 | ACCAATCAATCCCCTGAACAG | 57.908 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
951 | 1771 | 4.857251 | GGCGACGGATCCAAATCT | 57.143 | 55.556 | 13.41 | 0.00 | 32.12 | 2.40 |
952 | 1772 | 2.606275 | GGCGACGGATCCAAATCTC | 58.394 | 57.895 | 13.41 | 0.85 | 32.12 | 2.75 |
972 | 1792 | 0.462403 | GCGCACGGTTCCCCTATAAA | 60.462 | 55.000 | 0.30 | 0.00 | 0.00 | 1.40 |
973 | 1793 | 1.812708 | GCGCACGGTTCCCCTATAAAT | 60.813 | 52.381 | 0.30 | 0.00 | 0.00 | 1.40 |
986 | 1806 | 6.335934 | TCCCCTATAAATATACCAGCTCCAA | 58.664 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1000 | 1824 | 0.320771 | CTCCAAACTACGCAGGCACT | 60.321 | 55.000 | 0.00 | 0.00 | 43.88 | 4.40 |
1007 | 1831 | 2.579684 | CTACGCAGGCACTTCCCCTC | 62.580 | 65.000 | 0.00 | 0.00 | 34.60 | 4.30 |
1014 | 1838 | 1.562672 | GGCACTTCCCCTCCTGCTTA | 61.563 | 60.000 | 0.00 | 0.00 | 0.00 | 3.09 |
1030 | 1854 | 4.321750 | CCTGCTTATACGGTAATCACGGAT | 60.322 | 45.833 | 0.00 | 0.00 | 38.63 | 4.18 |
1180 | 2010 | 1.153489 | CCTCCTGCACGACATCCTG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
1439 | 2269 | 4.400961 | GCAGCAGGAAGACGGCCT | 62.401 | 66.667 | 0.00 | 0.00 | 41.55 | 5.19 |
1503 | 2333 | 1.533338 | GGTCGACATACACTACGGCTG | 60.533 | 57.143 | 18.91 | 0.00 | 0.00 | 4.85 |
1506 | 2336 | 1.480219 | GACATACACTACGGCTGCGC | 61.480 | 60.000 | 0.00 | 0.00 | 0.00 | 6.09 |
1573 | 2403 | 4.082523 | GCTACCTGCCGCCTCACA | 62.083 | 66.667 | 0.00 | 0.00 | 35.15 | 3.58 |
1626 | 2456 | 2.756691 | TTTCGGGCGGGATCTCGA | 60.757 | 61.111 | 21.68 | 5.43 | 0.00 | 4.04 |
1700 | 2530 | 1.729470 | CTGCTACGTCGCATCTCCCT | 61.729 | 60.000 | 15.69 | 0.00 | 39.52 | 4.20 |
1736 | 2566 | 3.144120 | CTCGTCAGCCCCTCCGATG | 62.144 | 68.421 | 0.00 | 0.00 | 0.00 | 3.84 |
1738 | 2568 | 2.502492 | CGTCAGCCCCTCCGATGAT | 61.502 | 63.158 | 0.00 | 0.00 | 0.00 | 2.45 |
1739 | 2569 | 1.832912 | GTCAGCCCCTCCGATGATT | 59.167 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
1740 | 2570 | 0.181350 | GTCAGCCCCTCCGATGATTT | 59.819 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1741 | 2571 | 0.469917 | TCAGCCCCTCCGATGATTTC | 59.530 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1742 | 2572 | 0.471617 | CAGCCCCTCCGATGATTTCT | 59.528 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1743 | 2573 | 1.694150 | CAGCCCCTCCGATGATTTCTA | 59.306 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
1752 | 2582 | 5.508153 | CCTCCGATGATTTCTACTACAGGTG | 60.508 | 48.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1768 | 2598 | 1.605058 | GGTGCTCCGCTCTTGTCCTA | 61.605 | 60.000 | 0.00 | 0.00 | 0.00 | 2.94 |
1779 | 2609 | 1.201647 | TCTTGTCCTAGCGTTTCCTCG | 59.798 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
1844 | 2674 | 1.742761 | CTACCCCGTCGTCACTTCTA | 58.257 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1876 | 2706 | 4.819761 | GCATCGCTCGTCCAGGCA | 62.820 | 66.667 | 0.00 | 0.00 | 0.00 | 4.75 |
1921 | 2751 | 2.743928 | GAGGTGCAGCGGAACAGG | 60.744 | 66.667 | 10.78 | 0.00 | 0.00 | 4.00 |
2005 | 2835 | 4.843728 | TCCCCAATGTCAGAAATCTACAC | 58.156 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2036 | 2866 | 5.394443 | GGGTTTACCACGACAGTATGTATCA | 60.394 | 44.000 | 0.69 | 0.00 | 45.99 | 2.15 |
2051 | 2881 | 4.689612 | TGTATCAATTCTAGCTCCCACC | 57.310 | 45.455 | 0.00 | 0.00 | 0.00 | 4.61 |
2089 | 2921 | 4.821260 | TGATATCGCATTGGTAGCATGTTT | 59.179 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
2150 | 2982 | 7.402811 | TGTGTAGTTCTCTGAAAATTGTACG | 57.597 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2180 | 4441 | 6.231951 | TGTTAAAATTGTACGGATCTCCACA | 58.768 | 36.000 | 0.00 | 0.00 | 35.14 | 4.17 |
2216 | 4595 | 7.298854 | TGAATATAGCATCGACTTAAGTCTCG | 58.701 | 38.462 | 28.30 | 19.28 | 42.66 | 4.04 |
2219 | 4598 | 2.097791 | AGCATCGACTTAAGTCTCGGTC | 59.902 | 50.000 | 28.30 | 15.55 | 42.66 | 4.79 |
2230 | 4609 | 3.428746 | AGTCTCGGTCGATTGAGATTG | 57.571 | 47.619 | 18.72 | 0.00 | 42.73 | 2.67 |
2246 | 4625 | 4.156556 | TGAGATTGAGCAATCCCGAAAAAG | 59.843 | 41.667 | 17.12 | 0.00 | 46.28 | 2.27 |
2294 | 4673 | 3.960102 | TCAACTCCAAATTCAAAGTGCCT | 59.040 | 39.130 | 0.00 | 0.00 | 0.00 | 4.75 |
2440 | 4916 | 4.100035 | TGTTCACAGATCCTAGTAGCATGG | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
2592 | 5068 | 4.281688 | ACAAGAATTTCAGGTGTTCCATGG | 59.718 | 41.667 | 4.97 | 4.97 | 35.89 | 3.66 |
2599 | 5075 | 2.173519 | CAGGTGTTCCATGGCTTGAAT | 58.826 | 47.619 | 6.96 | 0.00 | 35.89 | 2.57 |
2683 | 5159 | 2.178912 | ACGCCCAAAATCTCGAGAAA | 57.821 | 45.000 | 20.91 | 0.00 | 0.00 | 2.52 |
2689 | 5165 | 3.191371 | CCCAAAATCTCGAGAAAGTTGGG | 59.809 | 47.826 | 35.61 | 35.61 | 42.13 | 4.12 |
2767 | 5245 | 7.094334 | GGACGATTTTCTCCTTTCTTGGTATTT | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2771 | 5249 | 8.727100 | ATTTTCTCCTTTCTTGGTATTTCCTT | 57.273 | 30.769 | 0.00 | 0.00 | 37.07 | 3.36 |
2829 | 5307 | 2.165437 | TCAACAAAGTTTTTGGAGCGCT | 59.835 | 40.909 | 11.27 | 11.27 | 0.00 | 5.92 |
2890 | 5368 | 0.939419 | AAACGCCGTAACTCAACACC | 59.061 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2893 | 5371 | 1.012486 | CGCCGTAACTCAACACCTCC | 61.012 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3057 | 5535 | 0.596577 | CACGGGTCCGATGACGATAT | 59.403 | 55.000 | 16.90 | 0.00 | 42.73 | 1.63 |
3098 | 5576 | 5.351458 | AGAACAGAAAATGGCAAAGTGAAC | 58.649 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
3100 | 5578 | 5.343307 | ACAGAAAATGGCAAAGTGAACTT | 57.657 | 34.783 | 0.00 | 0.00 | 37.91 | 2.66 |
3122 | 5600 | 7.636150 | CTTGAATTAAGTTGATGGAGGACAT | 57.364 | 36.000 | 0.00 | 0.00 | 44.18 | 3.06 |
3138 | 5616 | 2.866762 | GGACATAAGGAACATGCGTCTC | 59.133 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3182 | 5660 | 3.566322 | CCACGGATCTACTAGAAGGTGAG | 59.434 | 52.174 | 0.00 | 4.04 | 29.75 | 3.51 |
3206 | 5684 | 1.202475 | GCACGGTTGGTTGGAACATTT | 60.202 | 47.619 | 0.00 | 0.00 | 39.30 | 2.32 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.532115 | AAACAGGGCATTGATTCGGC | 59.468 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1 | 2 | 2.609350 | CAAAACAGGGCATTGATTCGG | 58.391 | 47.619 | 0.00 | 0.00 | 0.00 | 4.30 |
2 | 3 | 1.994779 | GCAAAACAGGGCATTGATTCG | 59.005 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
3 | 4 | 2.349590 | GGCAAAACAGGGCATTGATTC | 58.650 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
4 | 5 | 1.338011 | CGGCAAAACAGGGCATTGATT | 60.338 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
5 | 6 | 0.247185 | CGGCAAAACAGGGCATTGAT | 59.753 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6 | 7 | 0.825425 | TCGGCAAAACAGGGCATTGA | 60.825 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
7 | 8 | 0.033228 | TTCGGCAAAACAGGGCATTG | 59.967 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
8 | 9 | 0.975887 | ATTCGGCAAAACAGGGCATT | 59.024 | 45.000 | 0.00 | 0.00 | 0.00 | 3.56 |
9 | 10 | 0.975887 | AATTCGGCAAAACAGGGCAT | 59.024 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
10 | 11 | 0.755686 | AAATTCGGCAAAACAGGGCA | 59.244 | 45.000 | 0.00 | 0.00 | 0.00 | 5.36 |
11 | 12 | 1.530720 | CAAAATTCGGCAAAACAGGGC | 59.469 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
12 | 13 | 2.799978 | GTCAAAATTCGGCAAAACAGGG | 59.200 | 45.455 | 0.00 | 0.00 | 0.00 | 4.45 |
13 | 14 | 2.799978 | GGTCAAAATTCGGCAAAACAGG | 59.200 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
14 | 15 | 2.470999 | CGGTCAAAATTCGGCAAAACAG | 59.529 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
15 | 16 | 2.099263 | TCGGTCAAAATTCGGCAAAACA | 59.901 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
16 | 17 | 2.733517 | TCGGTCAAAATTCGGCAAAAC | 58.266 | 42.857 | 0.00 | 0.00 | 0.00 | 2.43 |
17 | 18 | 3.438297 | TTCGGTCAAAATTCGGCAAAA | 57.562 | 38.095 | 0.00 | 0.00 | 0.00 | 2.44 |
18 | 19 | 3.651803 | ATTCGGTCAAAATTCGGCAAA | 57.348 | 38.095 | 0.00 | 0.00 | 0.00 | 3.68 |
19 | 20 | 4.396478 | TGATATTCGGTCAAAATTCGGCAA | 59.604 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
20 | 21 | 3.942115 | TGATATTCGGTCAAAATTCGGCA | 59.058 | 39.130 | 0.00 | 0.00 | 0.00 | 5.69 |
21 | 22 | 4.545823 | TGATATTCGGTCAAAATTCGGC | 57.454 | 40.909 | 0.00 | 0.00 | 0.00 | 5.54 |
22 | 23 | 7.700234 | TGAAAATGATATTCGGTCAAAATTCGG | 59.300 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
23 | 24 | 8.613613 | TGAAAATGATATTCGGTCAAAATTCG | 57.386 | 30.769 | 0.00 | 0.00 | 0.00 | 3.34 |
28 | 29 | 9.703892 | ACATTTTGAAAATGATATTCGGTCAAA | 57.296 | 25.926 | 30.75 | 0.00 | 33.10 | 2.69 |
29 | 30 | 9.703892 | AACATTTTGAAAATGATATTCGGTCAA | 57.296 | 25.926 | 30.75 | 0.00 | 0.00 | 3.18 |
30 | 31 | 9.703892 | AAACATTTTGAAAATGATATTCGGTCA | 57.296 | 25.926 | 30.75 | 0.00 | 0.00 | 4.02 |
58 | 59 | 1.603739 | GCCCTCAGACGCCCTTTTT | 60.604 | 57.895 | 0.00 | 0.00 | 0.00 | 1.94 |
59 | 60 | 2.034221 | GCCCTCAGACGCCCTTTT | 59.966 | 61.111 | 0.00 | 0.00 | 0.00 | 2.27 |
60 | 61 | 4.394712 | CGCCCTCAGACGCCCTTT | 62.395 | 66.667 | 0.00 | 0.00 | 0.00 | 3.11 |
88 | 89 | 4.785453 | GGTTCCCAGCCTCTGCCG | 62.785 | 72.222 | 0.00 | 0.00 | 38.69 | 5.69 |
89 | 90 | 4.432741 | GGGTTCCCAGCCTCTGCC | 62.433 | 72.222 | 2.59 | 0.00 | 37.61 | 4.85 |
90 | 91 | 4.785453 | CGGGTTCCCAGCCTCTGC | 62.785 | 72.222 | 8.70 | 0.00 | 38.58 | 4.26 |
91 | 92 | 2.317149 | GATCGGGTTCCCAGCCTCTG | 62.317 | 65.000 | 8.70 | 0.00 | 38.58 | 3.35 |
92 | 93 | 2.041265 | ATCGGGTTCCCAGCCTCT | 59.959 | 61.111 | 8.70 | 0.00 | 38.58 | 3.69 |
93 | 94 | 2.506472 | GATCGGGTTCCCAGCCTC | 59.494 | 66.667 | 8.70 | 0.00 | 38.58 | 4.70 |
94 | 95 | 3.470888 | CGATCGGGTTCCCAGCCT | 61.471 | 66.667 | 7.38 | 0.00 | 38.58 | 4.58 |
97 | 98 | 3.447025 | GAGGCGATCGGGTTCCCAG | 62.447 | 68.421 | 18.30 | 1.53 | 0.00 | 4.45 |
98 | 99 | 3.467226 | GAGGCGATCGGGTTCCCA | 61.467 | 66.667 | 18.30 | 0.00 | 0.00 | 4.37 |
99 | 100 | 4.237207 | GGAGGCGATCGGGTTCCC | 62.237 | 72.222 | 18.30 | 8.97 | 0.00 | 3.97 |
100 | 101 | 3.467226 | TGGAGGCGATCGGGTTCC | 61.467 | 66.667 | 18.30 | 9.37 | 0.00 | 3.62 |
101 | 102 | 2.202892 | GTGGAGGCGATCGGGTTC | 60.203 | 66.667 | 18.30 | 0.00 | 0.00 | 3.62 |
102 | 103 | 4.143333 | CGTGGAGGCGATCGGGTT | 62.143 | 66.667 | 18.30 | 0.00 | 0.00 | 4.11 |
112 | 113 | 1.268539 | GCGATATTTTTGCCGTGGAGG | 60.269 | 52.381 | 0.00 | 0.00 | 44.97 | 4.30 |
113 | 114 | 1.670811 | AGCGATATTTTTGCCGTGGAG | 59.329 | 47.619 | 0.00 | 0.00 | 35.03 | 3.86 |
114 | 115 | 1.400142 | CAGCGATATTTTTGCCGTGGA | 59.600 | 47.619 | 0.00 | 0.00 | 35.03 | 4.02 |
115 | 116 | 1.533756 | CCAGCGATATTTTTGCCGTGG | 60.534 | 52.381 | 0.00 | 0.00 | 35.03 | 4.94 |
116 | 117 | 1.132262 | ACCAGCGATATTTTTGCCGTG | 59.868 | 47.619 | 0.00 | 0.00 | 35.03 | 4.94 |
117 | 118 | 1.459450 | ACCAGCGATATTTTTGCCGT | 58.541 | 45.000 | 0.00 | 0.00 | 35.03 | 5.68 |
118 | 119 | 2.450160 | GAACCAGCGATATTTTTGCCG | 58.550 | 47.619 | 0.00 | 0.00 | 35.03 | 5.69 |
119 | 120 | 2.450160 | CGAACCAGCGATATTTTTGCC | 58.550 | 47.619 | 0.00 | 0.00 | 35.03 | 4.52 |
120 | 121 | 1.846175 | GCGAACCAGCGATATTTTTGC | 59.154 | 47.619 | 0.00 | 0.00 | 34.63 | 3.68 |
121 | 122 | 2.450160 | GGCGAACCAGCGATATTTTTG | 58.550 | 47.619 | 0.00 | 0.00 | 38.18 | 2.44 |
122 | 123 | 1.404035 | GGGCGAACCAGCGATATTTTT | 59.596 | 47.619 | 0.00 | 0.00 | 39.85 | 1.94 |
123 | 124 | 1.021968 | GGGCGAACCAGCGATATTTT | 58.978 | 50.000 | 0.00 | 0.00 | 39.85 | 1.82 |
124 | 125 | 0.818040 | GGGGCGAACCAGCGATATTT | 60.818 | 55.000 | 0.00 | 0.00 | 42.91 | 1.40 |
125 | 126 | 1.227853 | GGGGCGAACCAGCGATATT | 60.228 | 57.895 | 0.00 | 0.00 | 42.91 | 1.28 |
126 | 127 | 2.426023 | GGGGCGAACCAGCGATAT | 59.574 | 61.111 | 0.00 | 0.00 | 42.91 | 1.63 |
127 | 128 | 3.857038 | GGGGGCGAACCAGCGATA | 61.857 | 66.667 | 0.00 | 0.00 | 42.91 | 2.92 |
146 | 147 | 2.399356 | GGCTAGAAAAAGCGCCGCT | 61.399 | 57.895 | 5.39 | 5.39 | 43.74 | 5.52 |
147 | 148 | 2.100410 | GGCTAGAAAAAGCGCCGC | 59.900 | 61.111 | 2.29 | 0.00 | 43.74 | 6.53 |
148 | 149 | 2.791927 | GGGCTAGAAAAAGCGCCG | 59.208 | 61.111 | 2.29 | 0.00 | 46.59 | 6.46 |
151 | 152 | 0.811281 | CCAAGGGGCTAGAAAAAGCG | 59.189 | 55.000 | 0.00 | 0.00 | 43.74 | 4.68 |
152 | 153 | 1.186200 | CCCAAGGGGCTAGAAAAAGC | 58.814 | 55.000 | 0.00 | 0.00 | 41.99 | 3.51 |
178 | 179 | 1.141858 | CTTAGAACATCTCCAGCCCCC | 59.858 | 57.143 | 0.00 | 0.00 | 0.00 | 5.40 |
179 | 180 | 1.475930 | GCTTAGAACATCTCCAGCCCC | 60.476 | 57.143 | 1.71 | 0.00 | 30.56 | 5.80 |
180 | 181 | 1.488393 | AGCTTAGAACATCTCCAGCCC | 59.512 | 52.381 | 7.50 | 0.00 | 34.90 | 5.19 |
181 | 182 | 2.998316 | AGCTTAGAACATCTCCAGCC | 57.002 | 50.000 | 7.50 | 0.00 | 34.90 | 4.85 |
182 | 183 | 3.244044 | CCCTAGCTTAGAACATCTCCAGC | 60.244 | 52.174 | 0.00 | 4.17 | 34.68 | 4.85 |
183 | 184 | 3.964031 | ACCCTAGCTTAGAACATCTCCAG | 59.036 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
184 | 185 | 3.706594 | CACCCTAGCTTAGAACATCTCCA | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
185 | 186 | 3.070302 | CCACCCTAGCTTAGAACATCTCC | 59.930 | 52.174 | 0.00 | 0.00 | 0.00 | 3.71 |
186 | 187 | 3.707102 | ACCACCCTAGCTTAGAACATCTC | 59.293 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
187 | 188 | 3.452627 | CACCACCCTAGCTTAGAACATCT | 59.547 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
188 | 189 | 3.798202 | CACCACCCTAGCTTAGAACATC | 58.202 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
189 | 190 | 2.092914 | GCACCACCCTAGCTTAGAACAT | 60.093 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
190 | 191 | 1.278127 | GCACCACCCTAGCTTAGAACA | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
191 | 192 | 1.555533 | AGCACCACCCTAGCTTAGAAC | 59.444 | 52.381 | 0.00 | 0.00 | 34.37 | 3.01 |
192 | 193 | 1.831736 | GAGCACCACCCTAGCTTAGAA | 59.168 | 52.381 | 0.00 | 0.00 | 39.02 | 2.10 |
193 | 194 | 1.007238 | AGAGCACCACCCTAGCTTAGA | 59.993 | 52.381 | 0.00 | 0.00 | 39.02 | 2.10 |
194 | 195 | 1.410882 | GAGAGCACCACCCTAGCTTAG | 59.589 | 57.143 | 0.00 | 0.00 | 39.02 | 2.18 |
195 | 196 | 1.486211 | GAGAGCACCACCCTAGCTTA | 58.514 | 55.000 | 0.00 | 0.00 | 39.02 | 3.09 |
196 | 197 | 1.268283 | GGAGAGCACCACCCTAGCTT | 61.268 | 60.000 | 0.00 | 0.00 | 39.02 | 3.74 |
197 | 198 | 1.687493 | GGAGAGCACCACCCTAGCT | 60.687 | 63.158 | 0.00 | 0.00 | 42.17 | 3.32 |
198 | 199 | 1.681486 | GAGGAGAGCACCACCCTAGC | 61.681 | 65.000 | 0.00 | 0.00 | 0.00 | 3.42 |
199 | 200 | 0.032615 | AGAGGAGAGCACCACCCTAG | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
200 | 201 | 0.033011 | GAGAGGAGAGCACCACCCTA | 60.033 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
201 | 202 | 1.305718 | GAGAGGAGAGCACCACCCT | 60.306 | 63.158 | 0.00 | 0.00 | 0.00 | 4.34 |
202 | 203 | 2.363172 | GGAGAGGAGAGCACCACCC | 61.363 | 68.421 | 0.00 | 0.00 | 0.00 | 4.61 |
203 | 204 | 0.907230 | AAGGAGAGGAGAGCACCACC | 60.907 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
204 | 205 | 0.980423 | AAAGGAGAGGAGAGCACCAC | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
205 | 206 | 1.734655 | AAAAGGAGAGGAGAGCACCA | 58.265 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
206 | 207 | 2.869101 | AAAAAGGAGAGGAGAGCACC | 57.131 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
222 | 223 | 6.150474 | CCTCCTCGTAATAAAAGCAGGAAAAA | 59.850 | 38.462 | 0.00 | 0.00 | 29.55 | 1.94 |
223 | 224 | 5.646360 | CCTCCTCGTAATAAAAGCAGGAAAA | 59.354 | 40.000 | 0.00 | 0.00 | 29.55 | 2.29 |
224 | 225 | 5.183228 | CCTCCTCGTAATAAAAGCAGGAAA | 58.817 | 41.667 | 0.00 | 0.00 | 29.55 | 3.13 |
225 | 226 | 4.383770 | CCCTCCTCGTAATAAAAGCAGGAA | 60.384 | 45.833 | 0.00 | 0.00 | 29.55 | 3.36 |
226 | 227 | 3.134081 | CCCTCCTCGTAATAAAAGCAGGA | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
227 | 228 | 3.134081 | TCCCTCCTCGTAATAAAAGCAGG | 59.866 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
228 | 229 | 4.402056 | TCCCTCCTCGTAATAAAAGCAG | 57.598 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
229 | 230 | 4.703897 | CATCCCTCCTCGTAATAAAAGCA | 58.296 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
230 | 231 | 3.498777 | GCATCCCTCCTCGTAATAAAAGC | 59.501 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
231 | 232 | 4.703897 | TGCATCCCTCCTCGTAATAAAAG | 58.296 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
232 | 233 | 4.764050 | TGCATCCCTCCTCGTAATAAAA | 57.236 | 40.909 | 0.00 | 0.00 | 0.00 | 1.52 |
233 | 234 | 4.102524 | ACATGCATCCCTCCTCGTAATAAA | 59.897 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
234 | 235 | 3.646162 | ACATGCATCCCTCCTCGTAATAA | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
235 | 236 | 3.239449 | ACATGCATCCCTCCTCGTAATA | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
236 | 237 | 2.037772 | GACATGCATCCCTCCTCGTAAT | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
237 | 238 | 1.412710 | GACATGCATCCCTCCTCGTAA | 59.587 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
238 | 239 | 1.040646 | GACATGCATCCCTCCTCGTA | 58.959 | 55.000 | 0.00 | 0.00 | 0.00 | 3.43 |
239 | 240 | 0.977627 | TGACATGCATCCCTCCTCGT | 60.978 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
240 | 241 | 0.395686 | ATGACATGCATCCCTCCTCG | 59.604 | 55.000 | 0.00 | 0.00 | 28.85 | 4.63 |
241 | 242 | 2.621998 | CAAATGACATGCATCCCTCCTC | 59.378 | 50.000 | 0.00 | 0.00 | 35.78 | 3.71 |
242 | 243 | 2.662866 | CAAATGACATGCATCCCTCCT | 58.337 | 47.619 | 0.00 | 0.00 | 35.78 | 3.69 |
243 | 244 | 1.684983 | CCAAATGACATGCATCCCTCC | 59.315 | 52.381 | 0.00 | 0.00 | 35.78 | 4.30 |
244 | 245 | 1.684983 | CCCAAATGACATGCATCCCTC | 59.315 | 52.381 | 0.00 | 0.00 | 35.78 | 4.30 |
245 | 246 | 1.288633 | TCCCAAATGACATGCATCCCT | 59.711 | 47.619 | 0.00 | 0.00 | 35.78 | 4.20 |
246 | 247 | 1.779221 | TCCCAAATGACATGCATCCC | 58.221 | 50.000 | 0.00 | 0.00 | 35.78 | 3.85 |
247 | 248 | 4.374399 | GAATTCCCAAATGACATGCATCC | 58.626 | 43.478 | 0.00 | 0.00 | 35.78 | 3.51 |
248 | 249 | 4.374399 | GGAATTCCCAAATGACATGCATC | 58.626 | 43.478 | 14.03 | 0.00 | 33.21 | 3.91 |
249 | 250 | 4.411256 | GGAATTCCCAAATGACATGCAT | 57.589 | 40.909 | 14.03 | 0.00 | 34.93 | 3.96 |
250 | 251 | 3.891422 | GGAATTCCCAAATGACATGCA | 57.109 | 42.857 | 14.03 | 0.00 | 34.14 | 3.96 |
262 | 263 | 4.629340 | ACCTCATGGCAAGGGAATTCCC | 62.629 | 54.545 | 33.10 | 33.10 | 46.89 | 3.97 |
279 | 280 | 6.071896 | CCCTAAAAATTCTCTTTGTCCACCTC | 60.072 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
285 | 286 | 5.712446 | AGGAGCCCTAAAAATTCTCTTTGTC | 59.288 | 40.000 | 0.00 | 0.00 | 28.47 | 3.18 |
351 | 352 | 9.567917 | GAATCAAACAACGAAAAATTTCTAAGC | 57.432 | 29.630 | 4.54 | 0.00 | 35.07 | 3.09 |
358 | 359 | 9.191995 | GTCCTATGAATCAAACAACGAAAAATT | 57.808 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
360 | 361 | 7.860373 | CAGTCCTATGAATCAAACAACGAAAAA | 59.140 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
361 | 362 | 7.227711 | TCAGTCCTATGAATCAAACAACGAAAA | 59.772 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
362 | 363 | 6.708502 | TCAGTCCTATGAATCAAACAACGAAA | 59.291 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
365 | 374 | 6.480524 | TTCAGTCCTATGAATCAAACAACG | 57.519 | 37.500 | 0.00 | 0.00 | 34.31 | 4.10 |
394 | 403 | 9.672673 | CAAAGAAATCCTTAGGAGACATTTCTA | 57.327 | 33.333 | 21.07 | 0.00 | 39.21 | 2.10 |
397 | 406 | 9.232473 | GTACAAAGAAATCCTTAGGAGACATTT | 57.768 | 33.333 | 7.19 | 2.02 | 34.05 | 2.32 |
410 | 419 | 9.983804 | CCTACGAAAAATAGTACAAAGAAATCC | 57.016 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
426 | 435 | 5.941058 | TGGATGCTACAAATCCTACGAAAAA | 59.059 | 36.000 | 4.23 | 0.00 | 43.52 | 1.94 |
429 | 438 | 4.161565 | AGTGGATGCTACAAATCCTACGAA | 59.838 | 41.667 | 4.23 | 0.00 | 43.52 | 3.85 |
430 | 439 | 3.704566 | AGTGGATGCTACAAATCCTACGA | 59.295 | 43.478 | 4.23 | 0.00 | 43.52 | 3.43 |
432 | 441 | 5.023533 | TGAGTGGATGCTACAAATCCTAC | 57.976 | 43.478 | 4.23 | 1.75 | 43.52 | 3.18 |
441 | 450 | 4.787598 | CAACAAGTTTGAGTGGATGCTAC | 58.212 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
469 | 492 | 6.587206 | TGGTTTGTTTGATTGCATCATAGA | 57.413 | 33.333 | 0.00 | 0.00 | 39.39 | 1.98 |
521 | 544 | 9.822185 | GGAATAAGAAAAACATAGAATTGGCAT | 57.178 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
558 | 581 | 5.457342 | GGGCCTCTTTGATTCATAGGATTCT | 60.457 | 44.000 | 0.84 | 0.00 | 0.00 | 2.40 |
559 | 582 | 4.764308 | GGGCCTCTTTGATTCATAGGATTC | 59.236 | 45.833 | 0.84 | 0.00 | 0.00 | 2.52 |
561 | 584 | 3.986134 | AGGGCCTCTTTGATTCATAGGAT | 59.014 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
562 | 585 | 3.392616 | GAGGGCCTCTTTGATTCATAGGA | 59.607 | 47.826 | 26.44 | 0.85 | 0.00 | 2.94 |
563 | 586 | 3.137176 | TGAGGGCCTCTTTGATTCATAGG | 59.863 | 47.826 | 32.28 | 5.38 | 0.00 | 2.57 |
564 | 587 | 4.428294 | TGAGGGCCTCTTTGATTCATAG | 57.572 | 45.455 | 32.28 | 0.00 | 0.00 | 2.23 |
585 | 618 | 3.888930 | TCTTCTTTCTGGCCGTTTGATTT | 59.111 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
596 | 629 | 4.942852 | AGCACGATCTATCTTCTTTCTGG | 58.057 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
614 | 647 | 6.348704 | GCCACTAGTTCTACTATAGCTAGCAC | 60.349 | 46.154 | 18.83 | 2.50 | 34.21 | 4.40 |
618 | 651 | 5.012458 | TCGGCCACTAGTTCTACTATAGCTA | 59.988 | 44.000 | 2.24 | 0.00 | 29.08 | 3.32 |
622 | 1120 | 6.548622 | ACAATTCGGCCACTAGTTCTACTATA | 59.451 | 38.462 | 2.24 | 0.00 | 29.08 | 1.31 |
644 | 1142 | 3.561143 | ACAGAACCAAGCCATACAACAA | 58.439 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
673 | 1171 | 3.807622 | ACACTACATTGTTCCACGACTTG | 59.192 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
692 | 1190 | 0.035458 | AGCAGTGCTACCTTCCACAC | 59.965 | 55.000 | 18.11 | 0.00 | 36.99 | 3.82 |
725 | 1223 | 7.461749 | AGGTCATCTATTTTGAAACAGAGGAA | 58.538 | 34.615 | 1.27 | 0.00 | 30.50 | 3.36 |
726 | 1224 | 7.020827 | AGGTCATCTATTTTGAAACAGAGGA | 57.979 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
727 | 1225 | 7.693969 | AAGGTCATCTATTTTGAAACAGAGG | 57.306 | 36.000 | 0.00 | 0.00 | 0.00 | 3.69 |
806 | 1304 | 8.793592 | GGTGAAATACTTTGTACTCCTTTCATT | 58.206 | 33.333 | 0.00 | 0.00 | 34.71 | 2.57 |
807 | 1305 | 7.942341 | TGGTGAAATACTTTGTACTCCTTTCAT | 59.058 | 33.333 | 0.00 | 0.00 | 34.71 | 2.57 |
808 | 1306 | 7.284074 | TGGTGAAATACTTTGTACTCCTTTCA | 58.716 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
809 | 1307 | 7.739498 | TGGTGAAATACTTTGTACTCCTTTC | 57.261 | 36.000 | 0.00 | 0.00 | 0.00 | 2.62 |
810 | 1308 | 8.528044 | TTTGGTGAAATACTTTGTACTCCTTT | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 3.11 |
811 | 1309 | 8.528044 | TTTTGGTGAAATACTTTGTACTCCTT | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
812 | 1310 | 8.528044 | TTTTTGGTGAAATACTTTGTACTCCT | 57.472 | 30.769 | 0.00 | 0.00 | 0.00 | 3.69 |
836 | 1334 | 1.066454 | GCACTTTGCACCGTACCTTTT | 59.934 | 47.619 | 0.00 | 0.00 | 44.26 | 2.27 |
839 | 1337 | 4.058797 | GCACTTTGCACCGTACCT | 57.941 | 55.556 | 0.00 | 0.00 | 44.26 | 3.08 |
888 | 1396 | 1.534163 | GGTTCGGTTTGCACCTTCTAC | 59.466 | 52.381 | 0.00 | 0.00 | 41.64 | 2.59 |
913 | 1733 | 1.073923 | GTGTCCACTGTTCAGGGGATT | 59.926 | 52.381 | 23.99 | 0.00 | 0.00 | 3.01 |
914 | 1734 | 0.693049 | GTGTCCACTGTTCAGGGGAT | 59.307 | 55.000 | 23.99 | 0.00 | 0.00 | 3.85 |
915 | 1735 | 1.754380 | CGTGTCCACTGTTCAGGGGA | 61.754 | 60.000 | 18.53 | 18.53 | 0.00 | 4.81 |
916 | 1736 | 1.301716 | CGTGTCCACTGTTCAGGGG | 60.302 | 63.158 | 14.34 | 14.34 | 0.00 | 4.79 |
917 | 1737 | 1.301716 | CCGTGTCCACTGTTCAGGG | 60.302 | 63.158 | 4.82 | 0.00 | 0.00 | 4.45 |
918 | 1738 | 1.961277 | GCCGTGTCCACTGTTCAGG | 60.961 | 63.158 | 4.82 | 0.00 | 0.00 | 3.86 |
919 | 1739 | 2.310233 | CGCCGTGTCCACTGTTCAG | 61.310 | 63.158 | 0.00 | 0.00 | 0.00 | 3.02 |
920 | 1740 | 2.279851 | CGCCGTGTCCACTGTTCA | 60.280 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
921 | 1741 | 2.028484 | TCGCCGTGTCCACTGTTC | 59.972 | 61.111 | 0.00 | 0.00 | 0.00 | 3.18 |
922 | 1742 | 2.279918 | GTCGCCGTGTCCACTGTT | 60.280 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
923 | 1743 | 4.640855 | CGTCGCCGTGTCCACTGT | 62.641 | 66.667 | 0.00 | 0.00 | 0.00 | 3.55 |
926 | 1746 | 4.430765 | ATCCGTCGCCGTGTCCAC | 62.431 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
943 | 1763 | 2.813474 | CCGTGCGCGAGATTTGGA | 60.813 | 61.111 | 23.45 | 0.00 | 41.33 | 3.53 |
948 | 1768 | 4.814294 | GGGAACCGTGCGCGAGAT | 62.814 | 66.667 | 23.45 | 6.36 | 40.86 | 2.75 |
972 | 1792 | 3.386726 | TGCGTAGTTTGGAGCTGGTATAT | 59.613 | 43.478 | 0.00 | 0.00 | 0.00 | 0.86 |
973 | 1793 | 2.761767 | TGCGTAGTTTGGAGCTGGTATA | 59.238 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
986 | 1806 | 1.003718 | GGGAAGTGCCTGCGTAGTT | 60.004 | 57.895 | 0.00 | 0.00 | 36.66 | 2.24 |
1000 | 1824 | 1.343681 | ACCGTATAAGCAGGAGGGGAA | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 3.97 |
1007 | 1831 | 3.005050 | TCCGTGATTACCGTATAAGCAGG | 59.995 | 47.826 | 7.34 | 7.34 | 0.00 | 4.85 |
1014 | 1838 | 2.095059 | GCCGTATCCGTGATTACCGTAT | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1240 | 2070 | 2.467826 | GGTCATGAAGCGCCAGAGC | 61.468 | 63.158 | 2.29 | 0.83 | 37.41 | 4.09 |
1251 | 2081 | 1.405933 | CGATGTTGAGGCAGGTCATGA | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 3.07 |
1439 | 2269 | 2.577059 | GCGGATCCACCTGTCGAA | 59.423 | 61.111 | 13.41 | 0.00 | 36.31 | 3.71 |
1685 | 2515 | 2.831366 | GCGAGGGAGATGCGACGTA | 61.831 | 63.158 | 0.00 | 0.00 | 0.00 | 3.57 |
1686 | 2516 | 4.194720 | GCGAGGGAGATGCGACGT | 62.195 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
1736 | 2566 | 3.707793 | CGGAGCACCTGTAGTAGAAATC | 58.292 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1772 | 2602 | 1.255667 | AACGAGGCTAGGCGAGGAAA | 61.256 | 55.000 | 11.10 | 0.00 | 0.00 | 3.13 |
1844 | 2674 | 0.674895 | GATGCCAGCACCTCGTTCTT | 60.675 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1876 | 2706 | 7.238305 | TCATCCATGTCCTTTATACAGATGGAT | 59.762 | 37.037 | 11.94 | 11.94 | 43.02 | 3.41 |
1921 | 2751 | 2.359850 | TGTGGCTTCATCACCCGC | 60.360 | 61.111 | 0.00 | 0.00 | 34.46 | 6.13 |
2017 | 2847 | 7.342769 | AGAATTGATACATACTGTCGTGGTA | 57.657 | 36.000 | 0.00 | 0.00 | 0.00 | 3.25 |
2026 | 2856 | 6.014156 | GGTGGGAGCTAGAATTGATACATACT | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 2.12 |
2036 | 2866 | 1.207329 | GACACGGTGGGAGCTAGAATT | 59.793 | 52.381 | 13.48 | 0.00 | 0.00 | 2.17 |
2051 | 2881 | 6.020984 | TGCGATATCAAATTTCAAAGACACG | 58.979 | 36.000 | 3.12 | 0.00 | 0.00 | 4.49 |
2089 | 2921 | 7.227355 | TCCCTATAAATGGTTTTATGTGGGA | 57.773 | 36.000 | 19.10 | 19.10 | 46.15 | 4.37 |
2118 | 2950 | 2.926200 | CAGAGAACTACACAATCTGCCG | 59.074 | 50.000 | 0.00 | 0.00 | 31.83 | 5.69 |
2150 | 2982 | 9.704098 | GAGATCCGTACAATTTTAACAGAATTC | 57.296 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2180 | 4441 | 9.964303 | GTCGATGCTATATTCATGAGATCTTAT | 57.036 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2216 | 4595 | 3.249559 | GGATTGCTCAATCTCAATCGACC | 59.750 | 47.826 | 18.63 | 0.45 | 45.69 | 4.79 |
2219 | 4598 | 2.222678 | CGGGATTGCTCAATCTCAATCG | 59.777 | 50.000 | 19.11 | 12.53 | 46.14 | 3.34 |
2230 | 4609 | 4.237349 | TGTTTCTTTTTCGGGATTGCTC | 57.763 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
2246 | 4625 | 3.374988 | TCATGACGCAGAATCCATGTTTC | 59.625 | 43.478 | 0.00 | 0.00 | 38.00 | 2.78 |
2398 | 4874 | 6.428159 | GTGAACATGATAACAAAGACAGGACT | 59.572 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
2440 | 4916 | 7.198390 | TCCACGCATCTTAGTAATAACTACAC | 58.802 | 38.462 | 0.00 | 0.00 | 37.94 | 2.90 |
2524 | 5000 | 6.486657 | CCTGGTAGAAGACAACAAAGAAATGA | 59.513 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2592 | 5068 | 4.572795 | GGCTGAGGAGTAAAGTATTCAAGC | 59.427 | 45.833 | 0.00 | 0.00 | 0.00 | 4.01 |
2599 | 5075 | 2.895404 | ACAACGGCTGAGGAGTAAAGTA | 59.105 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2714 | 5192 | 9.443323 | TCAACTTTAATGAAAGATATGACCGAA | 57.557 | 29.630 | 9.70 | 0.00 | 44.23 | 4.30 |
2717 | 5195 | 9.396022 | TCCTCAACTTTAATGAAAGATATGACC | 57.604 | 33.333 | 9.70 | 0.00 | 44.23 | 4.02 |
2720 | 5198 | 9.098355 | TCGTCCTCAACTTTAATGAAAGATATG | 57.902 | 33.333 | 9.70 | 5.67 | 44.23 | 1.78 |
2829 | 5307 | 1.280457 | GCCTTCCCTCTCCTCTTTGA | 58.720 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2855 | 5333 | 3.317149 | GGCGTTTGGAAGGTTTACTCTTT | 59.683 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
2890 | 5368 | 4.322349 | CCTTCAGGTTCTTGTACTCAGGAG | 60.322 | 50.000 | 0.00 | 0.00 | 31.57 | 3.69 |
2984 | 5462 | 1.809207 | CGGCATTTCCTTCGGCATT | 59.191 | 52.632 | 0.00 | 0.00 | 0.00 | 3.56 |
3080 | 5558 | 5.596836 | TCAAGTTCACTTTGCCATTTTCT | 57.403 | 34.783 | 0.00 | 0.00 | 33.11 | 2.52 |
3098 | 5576 | 7.636150 | ATGTCCTCCATCAACTTAATTCAAG | 57.364 | 36.000 | 0.00 | 0.00 | 40.38 | 3.02 |
3100 | 5578 | 7.775093 | CCTTATGTCCTCCATCAACTTAATTCA | 59.225 | 37.037 | 0.00 | 0.00 | 34.86 | 2.57 |
3121 | 5599 | 4.471904 | TTGAGAGACGCATGTTCCTTAT | 57.528 | 40.909 | 0.00 | 0.00 | 0.00 | 1.73 |
3122 | 5600 | 3.953712 | TTGAGAGACGCATGTTCCTTA | 57.046 | 42.857 | 0.00 | 0.00 | 0.00 | 2.69 |
3138 | 5616 | 8.338259 | CGTGGTTAATCTCTGGATTTATTTGAG | 58.662 | 37.037 | 0.00 | 0.00 | 41.75 | 3.02 |
3182 | 5660 | 3.601685 | CCAACCAACCGTGCCACC | 61.602 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.