Multiple sequence alignment - TraesCS4A01G047600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G047600 chr4A 100.000 2321 0 0 1 2321 38715663 38717983 0.000000e+00 4287.0
1 TraesCS4A01G047600 chr4A 86.355 557 64 8 9 562 438322338 438322885 4.270000e-167 597.0
2 TraesCS4A01G047600 chr7A 97.960 1765 29 5 1 1764 676281168 676279410 0.000000e+00 3053.0
3 TraesCS4A01G047600 chr7A 88.172 558 44 14 1 556 316236518 316235981 0.000000e+00 645.0
4 TraesCS4A01G047600 chr5D 96.273 1771 54 9 1 1764 80213505 80215270 0.000000e+00 2894.0
5 TraesCS4A01G047600 chr5D 84.949 392 49 9 564 946 47520266 47520656 2.800000e-104 388.0
6 TraesCS4A01G047600 chr5D 100.000 36 0 0 1857 1892 66292085 66292120 1.490000e-07 67.6
7 TraesCS4A01G047600 chr3D 96.317 1765 59 6 1 1763 65434807 65433047 0.000000e+00 2894.0
8 TraesCS4A01G047600 chr1D 96.476 1589 48 6 179 1764 6255966 6254383 0.000000e+00 2617.0
9 TraesCS4A01G047600 chr2A 96.384 1051 33 5 1 1050 628523916 628522870 0.000000e+00 1725.0
10 TraesCS4A01G047600 chr2A 95.712 723 29 2 1042 1764 628522719 628521999 0.000000e+00 1162.0
11 TraesCS4A01G047600 chr2A 86.747 83 3 5 1693 1773 748886574 748886498 4.110000e-13 86.1
12 TraesCS4A01G047600 chr4B 87.744 1232 108 24 571 1774 116739396 116740612 0.000000e+00 1399.0
13 TraesCS4A01G047600 chr4B 86.557 305 24 10 1890 2177 522505255 522504951 1.030000e-83 320.0
14 TraesCS4A01G047600 chr4B 99.123 114 1 0 2116 2229 522504950 522504837 3.020000e-49 206.0
15 TraesCS4A01G047600 chr2D 90.741 972 68 15 1 962 602404105 602403146 0.000000e+00 1277.0
16 TraesCS4A01G047600 chr2D 90.619 970 72 14 1 962 602401950 602400992 0.000000e+00 1269.0
17 TraesCS4A01G047600 chr2D 92.831 809 48 8 957 1764 602379641 602378842 0.000000e+00 1164.0
18 TraesCS4A01G047600 chr2D 95.582 679 22 3 1087 1764 25805542 25806213 0.000000e+00 1081.0
19 TraesCS4A01G047600 chr2D 83.824 68 5 2 1819 1886 150381105 150381044 2.490000e-05 60.2
20 TraesCS4A01G047600 chr5B 90.303 825 64 12 777 1591 576800606 576801424 0.000000e+00 1066.0
21 TraesCS4A01G047600 chr5B 88.922 668 65 7 54 717 576799913 576800575 0.000000e+00 815.0
22 TraesCS4A01G047600 chr1B 85.075 804 75 21 956 1735 610963352 610964134 0.000000e+00 778.0
23 TraesCS4A01G047600 chr4D 88.013 317 27 6 1872 2177 426846073 426845757 4.710000e-97 364.0
24 TraesCS4A01G047600 chr4D 94.928 138 6 1 2116 2252 426845756 426845619 5.020000e-52 215.0
25 TraesCS4A01G047600 chr7D 92.754 69 2 3 1819 1885 46702728 46702661 1.900000e-16 97.1
26 TraesCS4A01G047600 chr6B 85.135 74 7 4 1819 1890 113712279 113712208 3.200000e-09 73.1
27 TraesCS4A01G047600 chr2B 85.507 69 8 2 1819 1885 545261452 545261384 1.150000e-08 71.3
28 TraesCS4A01G047600 chr7B 84.286 70 8 3 1819 1887 18081205 18081138 5.350000e-07 65.8
29 TraesCS4A01G047600 chr5A 81.690 71 10 3 1816 1885 41165991 41166059 3.220000e-04 56.5
30 TraesCS4A01G047600 chr5A 86.538 52 5 2 1835 1884 539948801 539948750 3.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G047600 chr4A 38715663 38717983 2320 False 4287.0 4287 100.0000 1 2321 1 chr4A.!!$F1 2320
1 TraesCS4A01G047600 chr4A 438322338 438322885 547 False 597.0 597 86.3550 9 562 1 chr4A.!!$F2 553
2 TraesCS4A01G047600 chr7A 676279410 676281168 1758 True 3053.0 3053 97.9600 1 1764 1 chr7A.!!$R2 1763
3 TraesCS4A01G047600 chr7A 316235981 316236518 537 True 645.0 645 88.1720 1 556 1 chr7A.!!$R1 555
4 TraesCS4A01G047600 chr5D 80213505 80215270 1765 False 2894.0 2894 96.2730 1 1764 1 chr5D.!!$F3 1763
5 TraesCS4A01G047600 chr3D 65433047 65434807 1760 True 2894.0 2894 96.3170 1 1763 1 chr3D.!!$R1 1762
6 TraesCS4A01G047600 chr1D 6254383 6255966 1583 True 2617.0 2617 96.4760 179 1764 1 chr1D.!!$R1 1585
7 TraesCS4A01G047600 chr2A 628521999 628523916 1917 True 1443.5 1725 96.0480 1 1764 2 chr2A.!!$R2 1763
8 TraesCS4A01G047600 chr4B 116739396 116740612 1216 False 1399.0 1399 87.7440 571 1774 1 chr4B.!!$F1 1203
9 TraesCS4A01G047600 chr2D 602400992 602404105 3113 True 1273.0 1277 90.6800 1 962 2 chr2D.!!$R3 961
10 TraesCS4A01G047600 chr2D 602378842 602379641 799 True 1164.0 1164 92.8310 957 1764 1 chr2D.!!$R2 807
11 TraesCS4A01G047600 chr2D 25805542 25806213 671 False 1081.0 1081 95.5820 1087 1764 1 chr2D.!!$F1 677
12 TraesCS4A01G047600 chr5B 576799913 576801424 1511 False 940.5 1066 89.6125 54 1591 2 chr5B.!!$F1 1537
13 TraesCS4A01G047600 chr1B 610963352 610964134 782 False 778.0 778 85.0750 956 1735 1 chr1B.!!$F1 779

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 179 2.043307 AACCCCAAGCCATTTCCAAT 57.957 45.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 3595 0.249911 AACGAGGCTCGAGCAACTTT 60.25 50.0 40.35 24.33 43.74 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 8.015185 ACTAATTAGCCATGCATCAAGAAAAT 57.985 30.769 12.54 0.00 0.00 1.82
172 179 2.043307 AACCCCAAGCCATTTCCAAT 57.957 45.000 0.00 0.00 0.00 3.16
323 334 4.069312 TCTGGTTTATCTGGTGGGAGTA 57.931 45.455 0.00 0.00 0.00 2.59
608 622 6.229733 GGCTTCACTGCTCTAGATATTTGAT 58.770 40.000 0.00 0.00 0.00 2.57
1567 2583 3.629058 AGATGAATTATGTCGACGTCCG 58.371 45.455 14.83 5.50 40.25 4.79
1635 2809 2.024369 ACACCTTCCAAAGACAAGGGTT 60.024 45.455 2.88 0.00 43.25 4.11
1764 3268 0.717784 GCACGGGCGTTTTACTAGTC 59.282 55.000 0.00 0.00 0.00 2.59
1765 3269 1.936203 GCACGGGCGTTTTACTAGTCA 60.936 52.381 0.00 0.00 0.00 3.41
1770 3274 3.434299 CGGGCGTTTTACTAGTCATGTTT 59.566 43.478 0.00 0.00 0.00 2.83
1772 3276 5.120519 CGGGCGTTTTACTAGTCATGTTTAA 59.879 40.000 0.00 0.00 0.00 1.52
1773 3277 6.183360 CGGGCGTTTTACTAGTCATGTTTAAT 60.183 38.462 0.00 0.00 0.00 1.40
1774 3278 7.532571 GGGCGTTTTACTAGTCATGTTTAATT 58.467 34.615 0.00 0.00 0.00 1.40
1775 3279 8.667463 GGGCGTTTTACTAGTCATGTTTAATTA 58.333 33.333 0.00 0.00 0.00 1.40
1800 3304 6.046290 ACACCTTAAGTTACACCTATGACC 57.954 41.667 0.97 0.00 0.00 4.02
1801 3305 5.783875 ACACCTTAAGTTACACCTATGACCT 59.216 40.000 0.97 0.00 0.00 3.85
1802 3306 6.955851 ACACCTTAAGTTACACCTATGACCTA 59.044 38.462 0.97 0.00 0.00 3.08
1803 3307 7.622479 ACACCTTAAGTTACACCTATGACCTAT 59.378 37.037 0.97 0.00 0.00 2.57
1804 3308 8.483758 CACCTTAAGTTACACCTATGACCTATT 58.516 37.037 0.97 0.00 0.00 1.73
1805 3309 8.483758 ACCTTAAGTTACACCTATGACCTATTG 58.516 37.037 0.97 0.00 0.00 1.90
1806 3310 8.701895 CCTTAAGTTACACCTATGACCTATTGA 58.298 37.037 0.97 0.00 0.00 2.57
1809 3313 8.964476 AAGTTACACCTATGACCTATTGATTG 57.036 34.615 0.00 0.00 0.00 2.67
1810 3314 7.509546 AGTTACACCTATGACCTATTGATTGG 58.490 38.462 0.00 0.00 0.00 3.16
1811 3315 4.718961 ACACCTATGACCTATTGATTGGC 58.281 43.478 0.00 0.00 0.00 4.52
1812 3316 4.413520 ACACCTATGACCTATTGATTGGCT 59.586 41.667 0.00 0.00 0.00 4.75
1813 3317 4.758674 CACCTATGACCTATTGATTGGCTG 59.241 45.833 0.00 0.00 0.00 4.85
1814 3318 4.413520 ACCTATGACCTATTGATTGGCTGT 59.586 41.667 0.00 0.00 0.00 4.40
1815 3319 5.103940 ACCTATGACCTATTGATTGGCTGTT 60.104 40.000 0.00 0.00 0.00 3.16
1816 3320 6.101150 ACCTATGACCTATTGATTGGCTGTTA 59.899 38.462 0.00 0.00 0.00 2.41
1817 3321 7.170965 CCTATGACCTATTGATTGGCTGTTAT 58.829 38.462 0.00 0.00 0.00 1.89
1818 3322 7.667219 CCTATGACCTATTGATTGGCTGTTATT 59.333 37.037 0.00 0.00 0.00 1.40
1819 3323 6.942532 TGACCTATTGATTGGCTGTTATTC 57.057 37.500 0.00 0.00 0.00 1.75
1820 3324 5.827797 TGACCTATTGATTGGCTGTTATTCC 59.172 40.000 0.00 0.00 0.00 3.01
1821 3325 5.140454 ACCTATTGATTGGCTGTTATTCCC 58.860 41.667 0.00 0.00 0.00 3.97
1822 3326 5.103515 ACCTATTGATTGGCTGTTATTCCCT 60.104 40.000 0.00 0.00 0.00 4.20
1823 3327 5.474876 CCTATTGATTGGCTGTTATTCCCTC 59.525 44.000 0.00 0.00 0.00 4.30
1824 3328 3.297134 TGATTGGCTGTTATTCCCTCC 57.703 47.619 0.00 0.00 0.00 4.30
1825 3329 2.222027 GATTGGCTGTTATTCCCTCCG 58.778 52.381 0.00 0.00 0.00 4.63
1829 3333 1.202545 GGCTGTTATTCCCTCCGTCTC 60.203 57.143 0.00 0.00 0.00 3.36
1831 3335 2.103263 GCTGTTATTCCCTCCGTCTCAT 59.897 50.000 0.00 0.00 0.00 2.90
1838 3342 8.487848 TGTTATTCCCTCCGTCTCATAAAATAA 58.512 33.333 0.00 0.00 0.00 1.40
1840 3344 6.801718 TTCCCTCCGTCTCATAAAATAAGA 57.198 37.500 0.00 0.00 0.00 2.10
1841 3345 6.158023 TCCCTCCGTCTCATAAAATAAGAC 57.842 41.667 0.00 0.00 36.82 3.01
1851 3355 9.314501 GTCTCATAAAATAAGACGTGTTTTGAC 57.685 33.333 2.22 1.62 33.17 3.18
1853 3357 8.996988 TCATAAAATAAGACGTGTTTTGACAC 57.003 30.769 2.22 0.00 33.17 3.67
1854 3358 8.832521 TCATAAAATAAGACGTGTTTTGACACT 58.167 29.630 2.22 0.00 38.40 3.55
1857 3361 7.781548 AAATAAGACGTGTTTTGACACTAGT 57.218 32.000 2.22 0.00 38.40 2.57
1858 3362 7.404139 AATAAGACGTGTTTTGACACTAGTC 57.596 36.000 2.22 8.33 45.19 2.59
1859 3363 4.650754 AGACGTGTTTTGACACTAGTCT 57.349 40.909 11.75 11.75 45.20 3.24
1860 3364 5.007385 AGACGTGTTTTGACACTAGTCTT 57.993 39.130 11.75 0.00 45.20 3.01
1862 3366 6.746120 AGACGTGTTTTGACACTAGTCTTAT 58.254 36.000 11.75 0.00 45.20 1.73
1863 3367 7.879070 AGACGTGTTTTGACACTAGTCTTATA 58.121 34.615 11.75 0.00 45.20 0.98
1864 3368 8.521176 AGACGTGTTTTGACACTAGTCTTATAT 58.479 33.333 11.75 0.00 45.20 0.86
1865 3369 9.136952 GACGTGTTTTGACACTAGTCTTATATT 57.863 33.333 0.00 0.00 45.20 1.28
1873 3377 8.107399 TGACACTAGTCTTATATTATGGGACG 57.893 38.462 0.00 0.00 45.20 4.79
1874 3378 7.176165 TGACACTAGTCTTATATTATGGGACGG 59.824 40.741 0.00 0.00 45.20 4.79
1875 3379 7.236529 ACACTAGTCTTATATTATGGGACGGA 58.763 38.462 0.00 0.00 32.86 4.69
1876 3380 7.393796 ACACTAGTCTTATATTATGGGACGGAG 59.606 40.741 0.00 0.00 32.86 4.63
1877 3381 6.890814 ACTAGTCTTATATTATGGGACGGAGG 59.109 42.308 0.00 0.00 32.86 4.30
1878 3382 5.024118 AGTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 32.86 4.30
1879 3383 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
1880 3384 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
1881 3385 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1882 3386 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1883 3387 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
1884 3388 2.077687 TATGGGACGGAGGGAGTAAC 57.922 55.000 0.00 0.00 0.00 2.50
1885 3389 0.338814 ATGGGACGGAGGGAGTAACT 59.661 55.000 0.00 0.00 0.00 2.24
1886 3390 1.002069 TGGGACGGAGGGAGTAACTA 58.998 55.000 0.00 0.00 0.00 2.24
1887 3391 1.358787 TGGGACGGAGGGAGTAACTAA 59.641 52.381 0.00 0.00 0.00 2.24
1888 3392 2.023695 TGGGACGGAGGGAGTAACTAAT 60.024 50.000 0.00 0.00 0.00 1.73
1889 3393 3.205056 TGGGACGGAGGGAGTAACTAATA 59.795 47.826 0.00 0.00 0.00 0.98
1890 3394 4.140853 TGGGACGGAGGGAGTAACTAATAT 60.141 45.833 0.00 0.00 0.00 1.28
1891 3395 4.462132 GGGACGGAGGGAGTAACTAATATC 59.538 50.000 0.00 0.00 0.00 1.63
1892 3396 4.155644 GGACGGAGGGAGTAACTAATATCG 59.844 50.000 0.00 0.00 0.00 2.92
1893 3397 4.978099 ACGGAGGGAGTAACTAATATCGA 58.022 43.478 0.00 0.00 0.00 3.59
1894 3398 5.002516 ACGGAGGGAGTAACTAATATCGAG 58.997 45.833 0.00 0.00 0.00 4.04
1895 3399 5.221803 ACGGAGGGAGTAACTAATATCGAGA 60.222 44.000 0.00 0.00 0.00 4.04
1896 3400 5.704515 CGGAGGGAGTAACTAATATCGAGAA 59.295 44.000 0.00 0.00 0.00 2.87
1897 3401 6.206243 CGGAGGGAGTAACTAATATCGAGAAA 59.794 42.308 0.00 0.00 0.00 2.52
1898 3402 7.255381 CGGAGGGAGTAACTAATATCGAGAAAA 60.255 40.741 0.00 0.00 0.00 2.29
1899 3403 8.586744 GGAGGGAGTAACTAATATCGAGAAAAT 58.413 37.037 0.00 0.00 0.00 1.82
1900 3404 9.413048 GAGGGAGTAACTAATATCGAGAAAATG 57.587 37.037 0.00 0.00 0.00 2.32
1901 3405 9.144298 AGGGAGTAACTAATATCGAGAAAATGA 57.856 33.333 0.00 0.00 0.00 2.57
1902 3406 9.413048 GGGAGTAACTAATATCGAGAAAATGAG 57.587 37.037 0.00 0.00 0.00 2.90
1903 3407 9.413048 GGAGTAACTAATATCGAGAAAATGAGG 57.587 37.037 0.00 0.00 0.00 3.86
1904 3408 9.413048 GAGTAACTAATATCGAGAAAATGAGGG 57.587 37.037 0.00 0.00 0.00 4.30
1905 3409 8.368668 AGTAACTAATATCGAGAAAATGAGGGG 58.631 37.037 0.00 0.00 0.00 4.79
1906 3410 6.996180 ACTAATATCGAGAAAATGAGGGGA 57.004 37.500 0.00 0.00 0.00 4.81
1907 3411 7.374975 ACTAATATCGAGAAAATGAGGGGAA 57.625 36.000 0.00 0.00 0.00 3.97
1908 3412 7.802117 ACTAATATCGAGAAAATGAGGGGAAA 58.198 34.615 0.00 0.00 0.00 3.13
1909 3413 8.272173 ACTAATATCGAGAAAATGAGGGGAAAA 58.728 33.333 0.00 0.00 0.00 2.29
1910 3414 6.944234 ATATCGAGAAAATGAGGGGAAAAC 57.056 37.500 0.00 0.00 0.00 2.43
1911 3415 4.367039 TCGAGAAAATGAGGGGAAAACT 57.633 40.909 0.00 0.00 0.00 2.66
1912 3416 5.492855 TCGAGAAAATGAGGGGAAAACTA 57.507 39.130 0.00 0.00 0.00 2.24
1913 3417 5.243207 TCGAGAAAATGAGGGGAAAACTAC 58.757 41.667 0.00 0.00 0.00 2.73
1914 3418 5.012768 TCGAGAAAATGAGGGGAAAACTACT 59.987 40.000 0.00 0.00 0.00 2.57
1915 3419 5.122396 CGAGAAAATGAGGGGAAAACTACTG 59.878 44.000 0.00 0.00 0.00 2.74
1916 3420 5.325239 AGAAAATGAGGGGAAAACTACTGG 58.675 41.667 0.00 0.00 0.00 4.00
1917 3421 2.808906 ATGAGGGGAAAACTACTGGC 57.191 50.000 0.00 0.00 0.00 4.85
1918 3422 0.323629 TGAGGGGAAAACTACTGGCG 59.676 55.000 0.00 0.00 0.00 5.69
1919 3423 0.323957 GAGGGGAAAACTACTGGCGT 59.676 55.000 0.00 0.00 0.00 5.68
1920 3424 0.323957 AGGGGAAAACTACTGGCGTC 59.676 55.000 0.00 0.00 0.00 5.19
1921 3425 0.675837 GGGGAAAACTACTGGCGTCC 60.676 60.000 0.00 0.00 0.00 4.79
1922 3426 1.017701 GGGAAAACTACTGGCGTCCG 61.018 60.000 0.00 0.00 0.00 4.79
1923 3427 0.320160 GGAAAACTACTGGCGTCCGT 60.320 55.000 0.00 0.00 0.00 4.69
1924 3428 1.066136 GAAAACTACTGGCGTCCGTC 58.934 55.000 0.00 0.00 0.00 4.79
1925 3429 0.665369 AAAACTACTGGCGTCCGTCG 60.665 55.000 0.00 0.00 43.12 5.12
1926 3430 1.518056 AAACTACTGGCGTCCGTCGA 61.518 55.000 0.00 0.00 42.86 4.20
1927 3431 1.518056 AACTACTGGCGTCCGTCGAA 61.518 55.000 0.00 0.00 42.86 3.71
1928 3432 1.210931 CTACTGGCGTCCGTCGAAA 59.789 57.895 0.00 0.00 42.86 3.46
1929 3433 1.069378 CTACTGGCGTCCGTCGAAAC 61.069 60.000 0.00 0.00 42.86 2.78
1930 3434 1.794151 TACTGGCGTCCGTCGAAACA 61.794 55.000 0.00 0.00 42.86 2.83
1931 3435 2.355363 TGGCGTCCGTCGAAACAG 60.355 61.111 0.00 0.00 42.86 3.16
1932 3436 3.110178 GGCGTCCGTCGAAACAGG 61.110 66.667 0.00 0.00 42.86 4.00
1933 3437 2.049802 GCGTCCGTCGAAACAGGA 60.050 61.111 0.00 0.00 42.86 3.86
1934 3438 1.445582 GCGTCCGTCGAAACAGGAT 60.446 57.895 0.00 0.00 42.86 3.24
1935 3439 1.012486 GCGTCCGTCGAAACAGGATT 61.012 55.000 0.00 0.00 42.86 3.01
1936 3440 0.989890 CGTCCGTCGAAACAGGATTC 59.010 55.000 0.00 0.00 42.86 2.52
1937 3441 1.667756 CGTCCGTCGAAACAGGATTCA 60.668 52.381 0.00 0.00 42.86 2.57
1938 3442 2.618053 GTCCGTCGAAACAGGATTCAT 58.382 47.619 0.00 0.00 36.34 2.57
1939 3443 2.603560 GTCCGTCGAAACAGGATTCATC 59.396 50.000 0.00 0.00 36.34 2.92
1940 3444 2.496070 TCCGTCGAAACAGGATTCATCT 59.504 45.455 0.00 0.00 0.00 2.90
1941 3445 2.860735 CCGTCGAAACAGGATTCATCTC 59.139 50.000 0.00 0.00 0.00 2.75
1942 3446 2.531912 CGTCGAAACAGGATTCATCTCG 59.468 50.000 0.00 0.00 0.00 4.04
1943 3447 3.730963 CGTCGAAACAGGATTCATCTCGA 60.731 47.826 0.00 0.00 0.00 4.04
1944 3448 3.794028 GTCGAAACAGGATTCATCTCGAG 59.206 47.826 5.93 5.93 34.81 4.04
1945 3449 3.119291 CGAAACAGGATTCATCTCGAGG 58.881 50.000 13.56 0.00 0.00 4.63
1946 3450 3.181486 CGAAACAGGATTCATCTCGAGGA 60.181 47.826 13.56 0.00 0.00 3.71
1947 3451 3.810310 AACAGGATTCATCTCGAGGAC 57.190 47.619 13.56 0.00 0.00 3.85
1948 3452 2.739943 ACAGGATTCATCTCGAGGACA 58.260 47.619 13.56 0.00 0.00 4.02
1949 3453 3.099905 ACAGGATTCATCTCGAGGACAA 58.900 45.455 13.56 2.96 0.00 3.18
1950 3454 3.515502 ACAGGATTCATCTCGAGGACAAA 59.484 43.478 13.56 2.87 0.00 2.83
1951 3455 4.163078 ACAGGATTCATCTCGAGGACAAAT 59.837 41.667 13.56 7.67 0.00 2.32
1952 3456 4.510711 CAGGATTCATCTCGAGGACAAATG 59.489 45.833 13.56 8.61 0.00 2.32
1953 3457 4.406972 AGGATTCATCTCGAGGACAAATGA 59.593 41.667 13.56 10.94 0.00 2.57
1954 3458 4.749099 GGATTCATCTCGAGGACAAATGAG 59.251 45.833 13.56 0.00 0.00 2.90
1955 3459 3.170791 TCATCTCGAGGACAAATGAGC 57.829 47.619 13.56 0.00 0.00 4.26
1956 3460 1.857217 CATCTCGAGGACAAATGAGCG 59.143 52.381 13.56 0.00 0.00 5.03
1957 3461 0.888619 TCTCGAGGACAAATGAGCGT 59.111 50.000 13.56 0.00 0.00 5.07
1958 3462 2.089201 TCTCGAGGACAAATGAGCGTA 58.911 47.619 13.56 0.00 0.00 4.42
1959 3463 2.490509 TCTCGAGGACAAATGAGCGTAA 59.509 45.455 13.56 0.00 0.00 3.18
1960 3464 3.130516 TCTCGAGGACAAATGAGCGTAAT 59.869 43.478 13.56 0.00 0.00 1.89
1961 3465 4.337274 TCTCGAGGACAAATGAGCGTAATA 59.663 41.667 13.56 0.00 0.00 0.98
1962 3466 5.001237 TCGAGGACAAATGAGCGTAATAA 57.999 39.130 0.00 0.00 0.00 1.40
1963 3467 5.041287 TCGAGGACAAATGAGCGTAATAAG 58.959 41.667 0.00 0.00 0.00 1.73
1964 3468 4.209288 CGAGGACAAATGAGCGTAATAAGG 59.791 45.833 0.00 0.00 0.00 2.69
1965 3469 5.099042 AGGACAAATGAGCGTAATAAGGT 57.901 39.130 0.00 0.00 0.00 3.50
1966 3470 6.229936 AGGACAAATGAGCGTAATAAGGTA 57.770 37.500 0.00 0.00 0.00 3.08
1967 3471 6.646267 AGGACAAATGAGCGTAATAAGGTAA 58.354 36.000 0.00 0.00 0.00 2.85
1968 3472 7.107542 AGGACAAATGAGCGTAATAAGGTAAA 58.892 34.615 0.00 0.00 0.00 2.01
1969 3473 7.608761 AGGACAAATGAGCGTAATAAGGTAAAA 59.391 33.333 0.00 0.00 0.00 1.52
1970 3474 8.403236 GGACAAATGAGCGTAATAAGGTAAAAT 58.597 33.333 0.00 0.00 0.00 1.82
1975 3479 9.485206 AATGAGCGTAATAAGGTAAAATATCGT 57.515 29.630 0.00 0.00 0.00 3.73
1976 3480 8.876275 TGAGCGTAATAAGGTAAAATATCGTT 57.124 30.769 0.00 0.00 0.00 3.85
1977 3481 8.971321 TGAGCGTAATAAGGTAAAATATCGTTC 58.029 33.333 0.00 0.00 0.00 3.95
1978 3482 8.876275 AGCGTAATAAGGTAAAATATCGTTCA 57.124 30.769 0.00 0.00 0.00 3.18
1979 3483 9.316730 AGCGTAATAAGGTAAAATATCGTTCAA 57.683 29.630 0.00 0.00 0.00 2.69
1998 3502 9.210329 TCGTTCAATTTGTATTATATATGCCGT 57.790 29.630 0.00 0.00 0.00 5.68
1999 3503 9.820229 CGTTCAATTTGTATTATATATGCCGTT 57.180 29.630 0.00 0.00 0.00 4.44
2006 3510 8.896320 TTGTATTATATATGCCGTTTGTCTGT 57.104 30.769 0.00 0.00 0.00 3.41
2017 3521 5.703592 TGCCGTTTGTCTGTAATTTATGACT 59.296 36.000 11.26 0.00 0.00 3.41
2019 3523 6.128391 GCCGTTTGTCTGTAATTTATGACTGA 60.128 38.462 11.26 0.00 0.00 3.41
2065 3569 9.846248 AATCTAAACACTTAAGAATCATTGTGC 57.154 29.630 10.09 0.00 0.00 4.57
2066 3570 8.389779 TCTAAACACTTAAGAATCATTGTGCA 57.610 30.769 10.09 0.00 0.00 4.57
2067 3571 8.289618 TCTAAACACTTAAGAATCATTGTGCAC 58.710 33.333 10.75 10.75 0.00 4.57
2068 3572 5.034554 ACACTTAAGAATCATTGTGCACG 57.965 39.130 13.13 0.00 0.00 5.34
2069 3573 4.754618 ACACTTAAGAATCATTGTGCACGA 59.245 37.500 9.77 9.77 0.00 4.35
2072 3576 6.249893 CACTTAAGAATCATTGTGCACGAATG 59.750 38.462 24.25 24.25 32.91 2.67
2087 3591 2.355756 ACGAATGCACATATGAACTGCC 59.644 45.455 10.38 0.00 0.00 4.85
2088 3592 2.600556 CGAATGCACATATGAACTGCCG 60.601 50.000 10.38 4.84 0.00 5.69
2089 3593 2.330440 ATGCACATATGAACTGCCGA 57.670 45.000 10.38 0.00 0.00 5.54
2090 3594 1.655484 TGCACATATGAACTGCCGAG 58.345 50.000 10.38 0.00 0.00 4.63
2091 3595 1.206849 TGCACATATGAACTGCCGAGA 59.793 47.619 10.38 0.00 0.00 4.04
2092 3596 2.279741 GCACATATGAACTGCCGAGAA 58.720 47.619 10.38 0.00 0.00 2.87
2093 3597 2.677836 GCACATATGAACTGCCGAGAAA 59.322 45.455 10.38 0.00 0.00 2.52
2094 3598 3.242543 GCACATATGAACTGCCGAGAAAG 60.243 47.826 10.38 0.00 0.00 2.62
2096 3600 4.393062 CACATATGAACTGCCGAGAAAGTT 59.607 41.667 10.38 0.00 39.31 2.66
2097 3601 4.393062 ACATATGAACTGCCGAGAAAGTTG 59.607 41.667 10.38 0.00 36.77 3.16
2099 3603 1.230324 GAACTGCCGAGAAAGTTGCT 58.770 50.000 0.00 0.00 36.77 3.91
2100 3604 1.195674 GAACTGCCGAGAAAGTTGCTC 59.804 52.381 0.03 0.03 36.77 4.26
2106 3610 3.523806 GAGAAAGTTGCTCGAGCCT 57.476 52.632 33.23 21.70 41.18 4.58
2108 3612 0.389166 AGAAAGTTGCTCGAGCCTCG 60.389 55.000 33.23 8.05 42.10 4.63
2109 3613 0.667792 GAAAGTTGCTCGAGCCTCGT 60.668 55.000 33.23 20.60 41.35 4.18
2110 3614 0.249911 AAAGTTGCTCGAGCCTCGTT 60.250 50.000 33.23 24.49 41.35 3.85
2132 3636 2.623878 CTCCAGAGCTGATCATTGCT 57.376 50.000 9.08 9.08 42.82 3.91
2133 3637 2.214347 CTCCAGAGCTGATCATTGCTG 58.786 52.381 13.72 11.77 39.91 4.41
2134 3638 0.663688 CCAGAGCTGATCATTGCTGC 59.336 55.000 13.72 5.03 39.91 5.25
2135 3639 0.305009 CAGAGCTGATCATTGCTGCG 59.695 55.000 13.72 1.78 39.91 5.18
2136 3640 0.814410 AGAGCTGATCATTGCTGCGG 60.814 55.000 13.72 0.00 39.91 5.69
2138 3642 2.326897 CTGATCATTGCTGCGGCG 59.673 61.111 13.96 0.51 42.25 6.46
2139 3643 3.177272 CTGATCATTGCTGCGGCGG 62.177 63.158 13.96 3.95 42.25 6.13
2140 3644 4.619140 GATCATTGCTGCGGCGGC 62.619 66.667 26.37 26.37 42.25 6.53
2154 3658 2.956964 CGGCGCGATCTTGAGGTC 60.957 66.667 12.10 0.00 0.00 3.85
2155 3659 2.956964 GGCGCGATCTTGAGGTCG 60.957 66.667 12.10 9.22 40.62 4.79
2156 3660 2.102357 GCGCGATCTTGAGGTCGA 59.898 61.111 17.16 0.00 40.11 4.20
2157 3661 1.941734 GCGCGATCTTGAGGTCGAG 60.942 63.158 17.16 14.56 40.11 4.04
2158 3662 1.298713 CGCGATCTTGAGGTCGAGG 60.299 63.158 17.16 4.57 40.11 4.63
2159 3663 1.590259 GCGATCTTGAGGTCGAGGC 60.590 63.158 17.16 0.00 40.11 4.70
2160 3664 1.066587 CGATCTTGAGGTCGAGGCC 59.933 63.158 7.89 0.00 40.11 5.19
2161 3665 1.066587 GATCTTGAGGTCGAGGCCG 59.933 63.158 0.00 0.00 37.07 6.13
2162 3666 1.379977 ATCTTGAGGTCGAGGCCGA 60.380 57.895 0.00 0.00 43.35 5.54
2170 3674 2.257371 TCGAGGCCGACGTTGAAG 59.743 61.111 20.74 0.00 40.30 3.02
2171 3675 3.479269 CGAGGCCGACGTTGAAGC 61.479 66.667 15.25 0.00 38.22 3.86
2172 3676 3.119096 GAGGCCGACGTTGAAGCC 61.119 66.667 13.59 13.59 46.13 4.35
2175 3679 3.343421 GCCGACGTTGAAGCCGTT 61.343 61.111 3.74 0.00 38.92 4.44
2176 3680 2.549282 CCGACGTTGAAGCCGTTG 59.451 61.111 3.74 0.00 38.92 4.10
2177 3681 2.241880 CCGACGTTGAAGCCGTTGT 61.242 57.895 3.74 0.00 38.92 3.32
2178 3682 0.940519 CCGACGTTGAAGCCGTTGTA 60.941 55.000 3.74 0.00 38.92 2.41
2179 3683 0.433492 CGACGTTGAAGCCGTTGTAG 59.567 55.000 0.00 0.00 38.92 2.74
2180 3684 0.788391 GACGTTGAAGCCGTTGTAGG 59.212 55.000 0.00 0.00 38.92 3.18
2188 3692 2.960129 CCGTTGTAGGCGATCGGC 60.960 66.667 32.17 32.17 42.51 5.54
2189 3693 3.320078 CGTTGTAGGCGATCGGCG 61.320 66.667 32.35 15.83 44.92 6.46
2198 3702 3.692367 CGATCGGCGCGAACATCC 61.692 66.667 12.10 0.00 39.99 3.51
2199 3703 2.584970 GATCGGCGCGAACATCCA 60.585 61.111 12.10 0.00 39.99 3.41
2200 3704 2.871427 GATCGGCGCGAACATCCAC 61.871 63.158 12.10 0.00 39.99 4.02
2201 3705 3.657448 ATCGGCGCGAACATCCACA 62.657 57.895 12.10 0.00 39.99 4.17
2202 3706 2.923426 ATCGGCGCGAACATCCACAT 62.923 55.000 12.10 0.00 39.99 3.21
2203 3707 2.404789 GGCGCGAACATCCACATG 59.595 61.111 12.10 0.00 35.92 3.21
2204 3708 2.398554 GGCGCGAACATCCACATGT 61.399 57.895 12.10 0.00 45.89 3.21
2205 3709 1.060937 GCGCGAACATCCACATGTC 59.939 57.895 12.10 0.00 42.89 3.06
2206 3710 1.634757 GCGCGAACATCCACATGTCA 61.635 55.000 12.10 0.00 42.89 3.58
2207 3711 1.009078 CGCGAACATCCACATGTCAT 58.991 50.000 0.00 0.00 42.89 3.06
2208 3712 1.004610 CGCGAACATCCACATGTCATC 60.005 52.381 0.00 0.00 42.89 2.92
2209 3713 1.331756 GCGAACATCCACATGTCATCC 59.668 52.381 0.00 0.00 42.89 3.51
2210 3714 1.594397 CGAACATCCACATGTCATCCG 59.406 52.381 0.00 0.00 42.89 4.18
2211 3715 2.738321 CGAACATCCACATGTCATCCGA 60.738 50.000 0.00 0.00 42.89 4.55
2212 3716 2.609427 ACATCCACATGTCATCCGAG 57.391 50.000 0.00 0.00 39.15 4.63
2213 3717 1.224075 CATCCACATGTCATCCGAGC 58.776 55.000 0.00 0.00 0.00 5.03
2214 3718 1.126488 ATCCACATGTCATCCGAGCT 58.874 50.000 0.00 0.00 0.00 4.09
2215 3719 0.461548 TCCACATGTCATCCGAGCTC 59.538 55.000 2.73 2.73 0.00 4.09
2216 3720 0.176449 CCACATGTCATCCGAGCTCA 59.824 55.000 15.40 0.00 0.00 4.26
2217 3721 1.405933 CCACATGTCATCCGAGCTCAA 60.406 52.381 15.40 0.75 0.00 3.02
2218 3722 2.349590 CACATGTCATCCGAGCTCAAA 58.650 47.619 15.40 0.33 0.00 2.69
2219 3723 2.743664 CACATGTCATCCGAGCTCAAAA 59.256 45.455 15.40 0.00 0.00 2.44
2220 3724 3.005554 ACATGTCATCCGAGCTCAAAAG 58.994 45.455 15.40 0.50 0.00 2.27
2230 3734 3.646650 GCTCAAAAGCTGTGCACAA 57.353 47.368 21.98 2.69 45.55 3.33
2231 3735 1.203065 GCTCAAAAGCTGTGCACAAC 58.797 50.000 21.98 17.12 45.55 3.32
2232 3736 1.469595 GCTCAAAAGCTGTGCACAACA 60.470 47.619 21.98 0.00 45.55 3.33
2241 3745 1.832883 TGTGCACAACAGGAAACAGT 58.167 45.000 19.28 0.00 33.78 3.55
2242 3746 1.742831 TGTGCACAACAGGAAACAGTC 59.257 47.619 19.28 0.00 33.78 3.51
2243 3747 1.742831 GTGCACAACAGGAAACAGTCA 59.257 47.619 13.17 0.00 0.00 3.41
2244 3748 2.016318 TGCACAACAGGAAACAGTCAG 58.984 47.619 0.00 0.00 0.00 3.51
2245 3749 1.334869 GCACAACAGGAAACAGTCAGG 59.665 52.381 0.00 0.00 0.00 3.86
2246 3750 2.917933 CACAACAGGAAACAGTCAGGA 58.082 47.619 0.00 0.00 0.00 3.86
2247 3751 3.480470 CACAACAGGAAACAGTCAGGAT 58.520 45.455 0.00 0.00 0.00 3.24
2248 3752 3.499918 CACAACAGGAAACAGTCAGGATC 59.500 47.826 0.00 0.00 0.00 3.36
2249 3753 3.136443 ACAACAGGAAACAGTCAGGATCA 59.864 43.478 0.00 0.00 0.00 2.92
2250 3754 4.136796 CAACAGGAAACAGTCAGGATCAA 58.863 43.478 0.00 0.00 0.00 2.57
2251 3755 4.647564 ACAGGAAACAGTCAGGATCAAT 57.352 40.909 0.00 0.00 0.00 2.57
2252 3756 4.990526 ACAGGAAACAGTCAGGATCAATT 58.009 39.130 0.00 0.00 0.00 2.32
2253 3757 5.388654 ACAGGAAACAGTCAGGATCAATTT 58.611 37.500 0.00 0.00 0.00 1.82
2254 3758 5.242393 ACAGGAAACAGTCAGGATCAATTTG 59.758 40.000 0.00 0.00 0.00 2.32
2255 3759 4.219288 AGGAAACAGTCAGGATCAATTTGC 59.781 41.667 0.00 0.00 0.00 3.68
2256 3760 4.219288 GGAAACAGTCAGGATCAATTTGCT 59.781 41.667 0.00 0.00 0.00 3.91
2259 3763 4.401022 ACAGTCAGGATCAATTTGCTCAA 58.599 39.130 2.95 0.00 0.00 3.02
2262 3766 5.632347 CAGTCAGGATCAATTTGCTCAAAAC 59.368 40.000 2.95 0.00 33.56 2.43
2264 3768 5.632347 GTCAGGATCAATTTGCTCAAAACAG 59.368 40.000 2.95 0.00 33.56 3.16
2265 3769 5.302568 TCAGGATCAATTTGCTCAAAACAGT 59.697 36.000 2.95 0.00 33.56 3.55
2266 3770 5.987347 CAGGATCAATTTGCTCAAAACAGTT 59.013 36.000 2.95 0.00 33.56 3.16
2269 3773 6.703165 GGATCAATTTGCTCAAAACAGTTTCT 59.297 34.615 0.00 0.00 33.56 2.52
2273 3777 8.898761 TCAATTTGCTCAAAACAGTTTCTACTA 58.101 29.630 0.00 0.00 33.56 1.82
2274 3778 9.173939 CAATTTGCTCAAAACAGTTTCTACTAG 57.826 33.333 0.00 0.00 33.56 2.57
2277 3781 8.951787 TTGCTCAAAACAGTTTCTACTAGTTA 57.048 30.769 0.00 0.00 31.96 2.24
2279 3783 9.555727 TGCTCAAAACAGTTTCTACTAGTTATT 57.444 29.630 0.00 0.00 31.96 1.40
2304 3808 5.869753 TCTTCTGAAGATAAAAGTGCAGC 57.130 39.130 15.82 0.00 31.20 5.25
2305 3809 4.697352 TCTTCTGAAGATAAAAGTGCAGCC 59.303 41.667 15.82 0.00 31.20 4.85
2306 3810 3.347216 TCTGAAGATAAAAGTGCAGCCC 58.653 45.455 0.00 0.00 0.00 5.19
2308 3812 3.084039 TGAAGATAAAAGTGCAGCCCTG 58.916 45.455 0.00 0.00 0.00 4.45
2309 3813 3.244875 TGAAGATAAAAGTGCAGCCCTGA 60.245 43.478 0.00 0.00 0.00 3.86
2313 3817 4.588528 AGATAAAAGTGCAGCCCTGAAAAA 59.411 37.500 0.00 0.00 0.00 1.94
2314 3818 2.602257 AAAGTGCAGCCCTGAAAAAC 57.398 45.000 0.00 0.00 0.00 2.43
2315 3819 1.484038 AAGTGCAGCCCTGAAAAACA 58.516 45.000 0.00 0.00 0.00 2.83
2316 3820 1.708341 AGTGCAGCCCTGAAAAACAT 58.292 45.000 0.00 0.00 0.00 2.71
2317 3821 1.615392 AGTGCAGCCCTGAAAAACATC 59.385 47.619 0.00 0.00 0.00 3.06
2318 3822 0.968405 TGCAGCCCTGAAAAACATCC 59.032 50.000 0.00 0.00 0.00 3.51
2319 3823 0.968405 GCAGCCCTGAAAAACATCCA 59.032 50.000 0.00 0.00 0.00 3.41
2320 3824 1.551883 GCAGCCCTGAAAAACATCCAT 59.448 47.619 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
748 771 4.957684 ATATAGGACAAAAGGGGAGTCG 57.042 45.455 0.00 0.00 33.18 4.18
934 958 2.664851 TTGCAACACCCGAGCTCG 60.665 61.111 29.06 29.06 39.44 5.03
1567 2583 6.349694 CCAAGGGTCTTCAAGCTATTCTTTTC 60.350 42.308 0.00 0.00 31.27 2.29
1635 2809 1.133407 GCCATAAAACATCGCCCGAAA 59.867 47.619 0.00 0.00 0.00 3.46
1774 3278 8.917088 GGTCATAGGTGTAACTTAAGGTGTATA 58.083 37.037 2.38 0.00 36.74 1.47
1775 3279 7.622479 AGGTCATAGGTGTAACTTAAGGTGTAT 59.378 37.037 2.38 0.00 36.74 2.29
1776 3280 6.955851 AGGTCATAGGTGTAACTTAAGGTGTA 59.044 38.462 2.38 0.00 36.74 2.90
1777 3281 5.783875 AGGTCATAGGTGTAACTTAAGGTGT 59.216 40.000 2.38 0.00 36.74 4.16
1778 3282 6.295719 AGGTCATAGGTGTAACTTAAGGTG 57.704 41.667 2.38 0.00 36.74 4.00
1779 3283 8.483758 CAATAGGTCATAGGTGTAACTTAAGGT 58.516 37.037 7.53 2.03 36.74 3.50
1780 3284 8.701895 TCAATAGGTCATAGGTGTAACTTAAGG 58.298 37.037 7.53 0.00 36.74 2.69
1784 3288 7.993183 CCAATCAATAGGTCATAGGTGTAACTT 59.007 37.037 0.00 0.00 36.74 2.66
1785 3289 7.509546 CCAATCAATAGGTCATAGGTGTAACT 58.490 38.462 0.00 0.00 36.74 2.24
1786 3290 6.204882 GCCAATCAATAGGTCATAGGTGTAAC 59.795 42.308 0.00 0.00 0.00 2.50
1787 3291 6.101150 AGCCAATCAATAGGTCATAGGTGTAA 59.899 38.462 0.00 0.00 0.00 2.41
1788 3292 5.606749 AGCCAATCAATAGGTCATAGGTGTA 59.393 40.000 0.00 0.00 0.00 2.90
1789 3293 4.413520 AGCCAATCAATAGGTCATAGGTGT 59.586 41.667 0.00 0.00 0.00 4.16
1790 3294 4.758674 CAGCCAATCAATAGGTCATAGGTG 59.241 45.833 0.00 0.00 0.00 4.00
1791 3295 4.413520 ACAGCCAATCAATAGGTCATAGGT 59.586 41.667 0.00 0.00 0.00 3.08
1792 3296 4.978099 ACAGCCAATCAATAGGTCATAGG 58.022 43.478 0.00 0.00 0.00 2.57
1793 3297 8.627208 AATAACAGCCAATCAATAGGTCATAG 57.373 34.615 0.00 0.00 0.00 2.23
1794 3298 7.665559 GGAATAACAGCCAATCAATAGGTCATA 59.334 37.037 0.00 0.00 0.00 2.15
1795 3299 6.491403 GGAATAACAGCCAATCAATAGGTCAT 59.509 38.462 0.00 0.00 0.00 3.06
1796 3300 5.827797 GGAATAACAGCCAATCAATAGGTCA 59.172 40.000 0.00 0.00 0.00 4.02
1797 3301 5.241728 GGGAATAACAGCCAATCAATAGGTC 59.758 44.000 0.00 0.00 0.00 3.85
1798 3302 5.103515 AGGGAATAACAGCCAATCAATAGGT 60.104 40.000 0.00 0.00 0.00 3.08
1799 3303 5.388654 AGGGAATAACAGCCAATCAATAGG 58.611 41.667 0.00 0.00 0.00 2.57
1800 3304 5.474876 GGAGGGAATAACAGCCAATCAATAG 59.525 44.000 0.00 0.00 0.00 1.73
1801 3305 5.385198 GGAGGGAATAACAGCCAATCAATA 58.615 41.667 0.00 0.00 0.00 1.90
1802 3306 4.218312 GGAGGGAATAACAGCCAATCAAT 58.782 43.478 0.00 0.00 0.00 2.57
1803 3307 3.631250 GGAGGGAATAACAGCCAATCAA 58.369 45.455 0.00 0.00 0.00 2.57
1804 3308 2.421388 CGGAGGGAATAACAGCCAATCA 60.421 50.000 0.00 0.00 0.00 2.57
1805 3309 2.222027 CGGAGGGAATAACAGCCAATC 58.778 52.381 0.00 0.00 0.00 2.67
1806 3310 1.564348 ACGGAGGGAATAACAGCCAAT 59.436 47.619 0.00 0.00 0.00 3.16
1807 3311 0.988832 ACGGAGGGAATAACAGCCAA 59.011 50.000 0.00 0.00 0.00 4.52
1808 3312 0.539986 GACGGAGGGAATAACAGCCA 59.460 55.000 0.00 0.00 0.00 4.75
1809 3313 0.831307 AGACGGAGGGAATAACAGCC 59.169 55.000 0.00 0.00 0.00 4.85
1810 3314 1.480954 TGAGACGGAGGGAATAACAGC 59.519 52.381 0.00 0.00 0.00 4.40
1811 3315 5.531122 TTATGAGACGGAGGGAATAACAG 57.469 43.478 0.00 0.00 0.00 3.16
1812 3316 5.943349 TTTATGAGACGGAGGGAATAACA 57.057 39.130 0.00 0.00 0.00 2.41
1813 3317 8.897872 TTATTTTATGAGACGGAGGGAATAAC 57.102 34.615 0.00 0.00 0.00 1.89
1814 3318 8.930527 TCTTATTTTATGAGACGGAGGGAATAA 58.069 33.333 0.00 0.00 0.00 1.40
1815 3319 8.365647 GTCTTATTTTATGAGACGGAGGGAATA 58.634 37.037 0.00 0.00 36.39 1.75
1816 3320 7.217906 GTCTTATTTTATGAGACGGAGGGAAT 58.782 38.462 0.00 0.00 36.39 3.01
1817 3321 6.579865 GTCTTATTTTATGAGACGGAGGGAA 58.420 40.000 0.00 0.00 36.39 3.97
1818 3322 6.158023 GTCTTATTTTATGAGACGGAGGGA 57.842 41.667 0.00 0.00 36.39 4.20
1825 3329 9.314501 GTCAAAACACGTCTTATTTTATGAGAC 57.685 33.333 0.00 0.00 41.11 3.36
1850 3354 7.236529 TCCGTCCCATAATATAAGACTAGTGT 58.763 38.462 0.00 0.00 0.00 3.55
1851 3355 7.148052 CCTCCGTCCCATAATATAAGACTAGTG 60.148 44.444 0.00 0.00 0.00 2.74
1853 3357 6.321690 CCCTCCGTCCCATAATATAAGACTAG 59.678 46.154 0.00 0.00 0.00 2.57
1854 3358 6.011362 TCCCTCCGTCCCATAATATAAGACTA 60.011 42.308 0.00 0.00 0.00 2.59
1855 3359 5.024118 CCCTCCGTCCCATAATATAAGACT 58.976 45.833 0.00 0.00 0.00 3.24
1856 3360 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
1857 3361 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1858 3362 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1859 3363 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1860 3364 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1862 3366 4.140853 AGTTACTCCCTCCGTCCCATAATA 60.141 45.833 0.00 0.00 0.00 0.98
1863 3367 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
1864 3368 2.023695 AGTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
1865 3369 1.572415 AGTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
1866 3370 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1867 3371 1.002069 TAGTTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1868 3372 2.149973 TTAGTTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
1869 3373 4.155644 CGATATTAGTTACTCCCTCCGTCC 59.844 50.000 0.00 0.00 0.00 4.79
1870 3374 4.999950 TCGATATTAGTTACTCCCTCCGTC 59.000 45.833 0.00 0.00 0.00 4.79
1871 3375 4.978099 TCGATATTAGTTACTCCCTCCGT 58.022 43.478 0.00 0.00 0.00 4.69
1872 3376 5.243981 TCTCGATATTAGTTACTCCCTCCG 58.756 45.833 0.00 0.00 0.00 4.63
1873 3377 7.521871 TTTCTCGATATTAGTTACTCCCTCC 57.478 40.000 0.00 0.00 0.00 4.30
1874 3378 9.413048 CATTTTCTCGATATTAGTTACTCCCTC 57.587 37.037 0.00 0.00 0.00 4.30
1875 3379 9.144298 TCATTTTCTCGATATTAGTTACTCCCT 57.856 33.333 0.00 0.00 0.00 4.20
1876 3380 9.413048 CTCATTTTCTCGATATTAGTTACTCCC 57.587 37.037 0.00 0.00 0.00 4.30
1877 3381 9.413048 CCTCATTTTCTCGATATTAGTTACTCC 57.587 37.037 0.00 0.00 0.00 3.85
1878 3382 9.413048 CCCTCATTTTCTCGATATTAGTTACTC 57.587 37.037 0.00 0.00 0.00 2.59
1879 3383 8.368668 CCCCTCATTTTCTCGATATTAGTTACT 58.631 37.037 0.00 0.00 0.00 2.24
1880 3384 8.365647 TCCCCTCATTTTCTCGATATTAGTTAC 58.634 37.037 0.00 0.00 0.00 2.50
1881 3385 8.486942 TCCCCTCATTTTCTCGATATTAGTTA 57.513 34.615 0.00 0.00 0.00 2.24
1882 3386 7.374975 TCCCCTCATTTTCTCGATATTAGTT 57.625 36.000 0.00 0.00 0.00 2.24
1883 3387 6.996180 TCCCCTCATTTTCTCGATATTAGT 57.004 37.500 0.00 0.00 0.00 2.24
1884 3388 8.560374 GTTTTCCCCTCATTTTCTCGATATTAG 58.440 37.037 0.00 0.00 0.00 1.73
1885 3389 8.272173 AGTTTTCCCCTCATTTTCTCGATATTA 58.728 33.333 0.00 0.00 0.00 0.98
1886 3390 7.119387 AGTTTTCCCCTCATTTTCTCGATATT 58.881 34.615 0.00 0.00 0.00 1.28
1887 3391 6.663734 AGTTTTCCCCTCATTTTCTCGATAT 58.336 36.000 0.00 0.00 0.00 1.63
1888 3392 6.062258 AGTTTTCCCCTCATTTTCTCGATA 57.938 37.500 0.00 0.00 0.00 2.92
1889 3393 4.923415 AGTTTTCCCCTCATTTTCTCGAT 58.077 39.130 0.00 0.00 0.00 3.59
1890 3394 4.367039 AGTTTTCCCCTCATTTTCTCGA 57.633 40.909 0.00 0.00 0.00 4.04
1891 3395 5.122396 CAGTAGTTTTCCCCTCATTTTCTCG 59.878 44.000 0.00 0.00 0.00 4.04
1892 3396 5.416013 CCAGTAGTTTTCCCCTCATTTTCTC 59.584 44.000 0.00 0.00 0.00 2.87
1893 3397 5.325239 CCAGTAGTTTTCCCCTCATTTTCT 58.675 41.667 0.00 0.00 0.00 2.52
1894 3398 4.082190 GCCAGTAGTTTTCCCCTCATTTTC 60.082 45.833 0.00 0.00 0.00 2.29
1895 3399 3.832490 GCCAGTAGTTTTCCCCTCATTTT 59.168 43.478 0.00 0.00 0.00 1.82
1896 3400 3.431415 GCCAGTAGTTTTCCCCTCATTT 58.569 45.455 0.00 0.00 0.00 2.32
1897 3401 2.618045 CGCCAGTAGTTTTCCCCTCATT 60.618 50.000 0.00 0.00 0.00 2.57
1898 3402 1.065418 CGCCAGTAGTTTTCCCCTCAT 60.065 52.381 0.00 0.00 0.00 2.90
1899 3403 0.323629 CGCCAGTAGTTTTCCCCTCA 59.676 55.000 0.00 0.00 0.00 3.86
1900 3404 0.323957 ACGCCAGTAGTTTTCCCCTC 59.676 55.000 0.00 0.00 0.00 4.30
1901 3405 0.323957 GACGCCAGTAGTTTTCCCCT 59.676 55.000 0.00 0.00 0.00 4.79
1902 3406 0.675837 GGACGCCAGTAGTTTTCCCC 60.676 60.000 0.00 0.00 0.00 4.81
1903 3407 1.017701 CGGACGCCAGTAGTTTTCCC 61.018 60.000 0.00 0.00 0.00 3.97
1904 3408 0.320160 ACGGACGCCAGTAGTTTTCC 60.320 55.000 0.00 0.00 0.00 3.13
1905 3409 1.066136 GACGGACGCCAGTAGTTTTC 58.934 55.000 0.00 0.00 0.00 2.29
1906 3410 0.665369 CGACGGACGCCAGTAGTTTT 60.665 55.000 0.00 0.00 34.51 2.43
1907 3411 1.080974 CGACGGACGCCAGTAGTTT 60.081 57.895 0.00 0.00 34.51 2.66
1908 3412 1.518056 TTCGACGGACGCCAGTAGTT 61.518 55.000 0.00 0.00 42.26 2.24
1909 3413 1.518056 TTTCGACGGACGCCAGTAGT 61.518 55.000 0.00 0.00 42.26 2.73
1910 3414 1.069378 GTTTCGACGGACGCCAGTAG 61.069 60.000 0.00 0.00 42.26 2.57
1911 3415 1.081242 GTTTCGACGGACGCCAGTA 60.081 57.895 0.00 0.00 42.26 2.74
1912 3416 2.355481 GTTTCGACGGACGCCAGT 60.355 61.111 0.00 0.00 42.26 4.00
1913 3417 2.355363 TGTTTCGACGGACGCCAG 60.355 61.111 0.00 0.00 42.26 4.85
1914 3418 2.355363 CTGTTTCGACGGACGCCA 60.355 61.111 0.00 0.00 42.26 5.69
1915 3419 2.830704 ATCCTGTTTCGACGGACGCC 62.831 60.000 0.00 0.00 42.26 5.68
1916 3420 1.012486 AATCCTGTTTCGACGGACGC 61.012 55.000 0.00 0.00 42.26 5.19
1917 3421 0.989890 GAATCCTGTTTCGACGGACG 59.010 55.000 0.00 0.00 44.09 4.79
1918 3422 2.074547 TGAATCCTGTTTCGACGGAC 57.925 50.000 0.00 0.00 0.00 4.79
1919 3423 2.496070 AGATGAATCCTGTTTCGACGGA 59.504 45.455 0.00 0.00 0.00 4.69
1920 3424 2.860735 GAGATGAATCCTGTTTCGACGG 59.139 50.000 0.00 0.00 0.00 4.79
1921 3425 2.531912 CGAGATGAATCCTGTTTCGACG 59.468 50.000 0.00 0.00 0.00 5.12
1922 3426 3.770666 TCGAGATGAATCCTGTTTCGAC 58.229 45.455 0.00 0.00 31.54 4.20
1923 3427 3.181486 CCTCGAGATGAATCCTGTTTCGA 60.181 47.826 15.71 2.80 34.82 3.71
1924 3428 3.119291 CCTCGAGATGAATCCTGTTTCG 58.881 50.000 15.71 0.00 0.00 3.46
1925 3429 4.116238 GTCCTCGAGATGAATCCTGTTTC 58.884 47.826 15.71 0.00 0.00 2.78
1926 3430 3.515502 TGTCCTCGAGATGAATCCTGTTT 59.484 43.478 15.71 0.00 0.00 2.83
1927 3431 3.099905 TGTCCTCGAGATGAATCCTGTT 58.900 45.455 15.71 0.00 0.00 3.16
1928 3432 2.739943 TGTCCTCGAGATGAATCCTGT 58.260 47.619 15.71 0.00 0.00 4.00
1929 3433 3.808466 TTGTCCTCGAGATGAATCCTG 57.192 47.619 15.71 0.00 0.00 3.86
1930 3434 4.406972 TCATTTGTCCTCGAGATGAATCCT 59.593 41.667 15.71 0.00 0.00 3.24
1931 3435 4.697514 TCATTTGTCCTCGAGATGAATCC 58.302 43.478 15.71 0.00 0.00 3.01
1932 3436 4.210955 GCTCATTTGTCCTCGAGATGAATC 59.789 45.833 15.71 5.76 0.00 2.52
1933 3437 4.125703 GCTCATTTGTCCTCGAGATGAAT 58.874 43.478 15.71 5.79 0.00 2.57
1934 3438 3.525537 GCTCATTTGTCCTCGAGATGAA 58.474 45.455 15.71 3.51 0.00 2.57
1935 3439 2.480244 CGCTCATTTGTCCTCGAGATGA 60.480 50.000 15.71 13.31 0.00 2.92
1936 3440 1.857217 CGCTCATTTGTCCTCGAGATG 59.143 52.381 15.71 9.37 0.00 2.90
1937 3441 1.478510 ACGCTCATTTGTCCTCGAGAT 59.521 47.619 15.71 0.00 0.00 2.75
1938 3442 0.888619 ACGCTCATTTGTCCTCGAGA 59.111 50.000 15.71 0.00 0.00 4.04
1939 3443 2.561733 TACGCTCATTTGTCCTCGAG 57.438 50.000 5.13 5.13 0.00 4.04
1940 3444 3.520290 ATTACGCTCATTTGTCCTCGA 57.480 42.857 0.00 0.00 0.00 4.04
1941 3445 4.209288 CCTTATTACGCTCATTTGTCCTCG 59.791 45.833 0.00 0.00 0.00 4.63
1942 3446 5.116882 ACCTTATTACGCTCATTTGTCCTC 58.883 41.667 0.00 0.00 0.00 3.71
1943 3447 5.099042 ACCTTATTACGCTCATTTGTCCT 57.901 39.130 0.00 0.00 0.00 3.85
1944 3448 6.913873 TTACCTTATTACGCTCATTTGTCC 57.086 37.500 0.00 0.00 0.00 4.02
1949 3453 9.485206 ACGATATTTTACCTTATTACGCTCATT 57.515 29.630 0.00 0.00 0.00 2.57
1950 3454 9.485206 AACGATATTTTACCTTATTACGCTCAT 57.515 29.630 0.00 0.00 0.00 2.90
1951 3455 8.876275 AACGATATTTTACCTTATTACGCTCA 57.124 30.769 0.00 0.00 0.00 4.26
1952 3456 8.971321 TGAACGATATTTTACCTTATTACGCTC 58.029 33.333 0.00 0.00 0.00 5.03
1953 3457 8.876275 TGAACGATATTTTACCTTATTACGCT 57.124 30.769 0.00 0.00 0.00 5.07
1972 3476 9.210329 ACGGCATATATAATACAAATTGAACGA 57.790 29.630 0.00 0.00 0.00 3.85
1973 3477 9.820229 AACGGCATATATAATACAAATTGAACG 57.180 29.630 0.00 0.00 0.00 3.95
1980 3484 9.332502 ACAGACAAACGGCATATATAATACAAA 57.667 29.630 0.00 0.00 0.00 2.83
1981 3485 8.896320 ACAGACAAACGGCATATATAATACAA 57.104 30.769 0.00 0.00 0.00 2.41
1982 3486 9.984190 TTACAGACAAACGGCATATATAATACA 57.016 29.630 0.00 0.00 0.00 2.29
1989 3493 9.549078 TCATAAATTACAGACAAACGGCATATA 57.451 29.630 0.00 0.00 0.00 0.86
1990 3494 8.342634 GTCATAAATTACAGACAAACGGCATAT 58.657 33.333 3.49 0.00 0.00 1.78
1991 3495 7.551262 AGTCATAAATTACAGACAAACGGCATA 59.449 33.333 9.21 0.00 33.56 3.14
1992 3496 6.374333 AGTCATAAATTACAGACAAACGGCAT 59.626 34.615 9.21 0.00 33.56 4.40
1993 3497 5.703592 AGTCATAAATTACAGACAAACGGCA 59.296 36.000 9.21 0.00 33.56 5.69
1994 3498 6.021596 CAGTCATAAATTACAGACAAACGGC 58.978 40.000 9.21 0.00 33.56 5.68
1995 3499 7.359262 TCAGTCATAAATTACAGACAAACGG 57.641 36.000 9.21 0.00 33.56 4.44
1996 3500 9.825972 ATTTCAGTCATAAATTACAGACAAACG 57.174 29.630 9.21 0.00 33.56 3.60
2012 3516 8.413309 TTCCTTCTTGAATTCATTTCAGTCAT 57.587 30.769 9.40 0.00 44.90 3.06
2039 3543 9.846248 GCACAATGATTCTTAAGTGTTTAGATT 57.154 29.630 1.63 0.00 0.00 2.40
2042 3546 7.269084 CGTGCACAATGATTCTTAAGTGTTTAG 59.731 37.037 18.64 0.00 0.00 1.85
2045 3549 5.238432 TCGTGCACAATGATTCTTAAGTGTT 59.762 36.000 18.64 0.00 0.00 3.32
2046 3550 4.754618 TCGTGCACAATGATTCTTAAGTGT 59.245 37.500 18.64 0.00 0.00 3.55
2047 3551 5.281693 TCGTGCACAATGATTCTTAAGTG 57.718 39.130 18.64 0.00 0.00 3.16
2048 3552 5.940192 TTCGTGCACAATGATTCTTAAGT 57.060 34.783 18.64 0.00 0.00 2.24
2050 3554 5.094812 GCATTCGTGCACAATGATTCTTAA 58.905 37.500 29.81 4.90 33.69 1.85
2051 3555 4.155644 TGCATTCGTGCACAATGATTCTTA 59.844 37.500 29.81 14.59 40.23 2.10
2054 3558 2.866198 TGCATTCGTGCACAATGATTC 58.134 42.857 29.81 19.34 40.23 2.52
2064 3568 3.357021 CAGTTCATATGTGCATTCGTGC 58.643 45.455 1.90 0.00 0.00 5.34
2065 3569 3.357021 GCAGTTCATATGTGCATTCGTG 58.643 45.455 10.92 0.00 37.16 4.35
2066 3570 2.355756 GGCAGTTCATATGTGCATTCGT 59.644 45.455 16.08 0.00 39.05 3.85
2067 3571 2.600556 CGGCAGTTCATATGTGCATTCG 60.601 50.000 16.08 8.60 39.05 3.34
2068 3572 2.613595 TCGGCAGTTCATATGTGCATTC 59.386 45.455 16.08 1.75 39.05 2.67
2069 3573 2.615447 CTCGGCAGTTCATATGTGCATT 59.385 45.455 16.08 0.00 39.05 3.56
2072 3576 1.939974 TCTCGGCAGTTCATATGTGC 58.060 50.000 7.99 7.99 36.42 4.57
2073 3577 3.935203 ACTTTCTCGGCAGTTCATATGTG 59.065 43.478 1.90 0.00 0.00 3.21
2074 3578 4.207891 ACTTTCTCGGCAGTTCATATGT 57.792 40.909 1.90 0.00 0.00 2.29
2077 3581 2.742053 GCAACTTTCTCGGCAGTTCATA 59.258 45.455 0.00 0.00 30.48 2.15
2079 3583 0.944386 GCAACTTTCTCGGCAGTTCA 59.056 50.000 0.00 0.00 30.48 3.18
2080 3584 1.195674 GAGCAACTTTCTCGGCAGTTC 59.804 52.381 0.00 0.00 30.48 3.01
2081 3585 1.230324 GAGCAACTTTCTCGGCAGTT 58.770 50.000 0.00 0.00 33.29 3.16
2083 3587 1.784062 CGAGCAACTTTCTCGGCAG 59.216 57.895 3.19 0.00 46.82 4.85
2084 3588 3.951332 CGAGCAACTTTCTCGGCA 58.049 55.556 3.19 0.00 46.82 5.69
2088 3592 1.355005 GAGGCTCGAGCAACTTTCTC 58.645 55.000 36.27 26.71 44.36 2.87
2089 3593 0.389166 CGAGGCTCGAGCAACTTTCT 60.389 55.000 36.27 23.49 43.74 2.52
2090 3594 0.667792 ACGAGGCTCGAGCAACTTTC 60.668 55.000 40.35 22.53 43.74 2.62
2091 3595 0.249911 AACGAGGCTCGAGCAACTTT 60.250 50.000 40.35 24.33 43.74 2.66
2092 3596 0.946221 CAACGAGGCTCGAGCAACTT 60.946 55.000 40.35 21.56 43.74 2.66
2093 3597 1.373497 CAACGAGGCTCGAGCAACT 60.373 57.895 40.35 25.67 43.74 3.16
2094 3598 2.383527 CCAACGAGGCTCGAGCAAC 61.384 63.158 40.35 26.59 43.74 4.17
2113 3617 2.214347 CAGCAATGATCAGCTCTGGAG 58.786 52.381 6.49 0.00 39.50 3.86
2115 3619 0.663688 GCAGCAATGATCAGCTCTGG 59.336 55.000 17.23 5.96 39.50 3.86
2116 3620 0.305009 CGCAGCAATGATCAGCTCTG 59.695 55.000 6.49 10.55 39.50 3.35
2117 3621 0.814410 CCGCAGCAATGATCAGCTCT 60.814 55.000 6.49 0.00 39.50 4.09
2118 3622 1.647629 CCGCAGCAATGATCAGCTC 59.352 57.895 6.49 2.48 39.50 4.09
2119 3623 2.478890 GCCGCAGCAATGATCAGCT 61.479 57.895 0.09 2.14 42.94 4.24
2121 3625 2.326897 CGCCGCAGCAATGATCAG 59.673 61.111 0.09 0.00 39.83 2.90
2122 3626 3.204119 CCGCCGCAGCAATGATCA 61.204 61.111 0.00 0.00 39.83 2.92
2123 3627 4.619140 GCCGCCGCAGCAATGATC 62.619 66.667 0.00 0.00 39.83 2.92
2138 3642 2.956964 CGACCTCAAGATCGCGCC 60.957 66.667 0.00 0.00 0.00 6.53
2139 3643 1.941734 CTCGACCTCAAGATCGCGC 60.942 63.158 0.00 0.00 38.24 6.86
2140 3644 1.298713 CCTCGACCTCAAGATCGCG 60.299 63.158 0.00 0.00 38.24 5.87
2141 3645 1.590259 GCCTCGACCTCAAGATCGC 60.590 63.158 0.00 0.00 38.24 4.58
2142 3646 1.066587 GGCCTCGACCTCAAGATCG 59.933 63.158 0.00 0.00 39.72 3.69
2143 3647 1.066587 CGGCCTCGACCTCAAGATC 59.933 63.158 0.00 0.00 39.00 2.75
2144 3648 1.379977 TCGGCCTCGACCTCAAGAT 60.380 57.895 0.00 0.00 40.88 2.40
2145 3649 2.035155 TCGGCCTCGACCTCAAGA 59.965 61.111 0.00 0.00 40.88 3.02
2153 3657 2.257371 CTTCAACGTCGGCCTCGA 59.743 61.111 20.77 2.55 43.86 4.04
2154 3658 3.479269 GCTTCAACGTCGGCCTCG 61.479 66.667 14.09 14.09 37.82 4.63
2155 3659 3.119096 GGCTTCAACGTCGGCCTC 61.119 66.667 0.00 0.00 41.20 4.70
2158 3662 3.343421 AACGGCTTCAACGTCGGC 61.343 61.111 0.00 0.00 44.83 5.54
2159 3663 0.940519 TACAACGGCTTCAACGTCGG 60.941 55.000 0.00 0.00 44.83 4.79
2160 3664 0.433492 CTACAACGGCTTCAACGTCG 59.567 55.000 0.00 0.00 44.83 5.12
2161 3665 0.788391 CCTACAACGGCTTCAACGTC 59.212 55.000 0.00 0.00 44.83 4.34
2162 3666 1.226030 GCCTACAACGGCTTCAACGT 61.226 55.000 0.00 0.00 46.63 3.99
2163 3667 1.495951 GCCTACAACGGCTTCAACG 59.504 57.895 0.00 0.00 46.63 4.10
2170 3674 2.960129 CCGATCGCCTACAACGGC 60.960 66.667 10.32 0.00 46.68 5.68
2171 3675 2.960129 GCCGATCGCCTACAACGG 60.960 66.667 10.32 0.00 45.26 4.44
2172 3676 3.320078 CGCCGATCGCCTACAACG 61.320 66.667 10.32 0.36 0.00 4.10
2181 3685 3.692367 GGATGTTCGCGCCGATCG 61.692 66.667 8.51 8.51 42.12 3.69
2182 3686 2.584970 TGGATGTTCGCGCCGATC 60.585 61.111 0.00 1.58 35.23 3.69
2183 3687 2.890474 GTGGATGTTCGCGCCGAT 60.890 61.111 0.00 0.00 35.23 4.18
2184 3688 3.657448 ATGTGGATGTTCGCGCCGA 62.657 57.895 0.00 0.00 0.00 5.54
2185 3689 3.195002 ATGTGGATGTTCGCGCCG 61.195 61.111 0.00 0.00 0.00 6.46
2186 3690 2.309764 GACATGTGGATGTTCGCGCC 62.310 60.000 1.15 0.00 43.22 6.53
2187 3691 1.060937 GACATGTGGATGTTCGCGC 59.939 57.895 1.15 0.00 43.22 6.86
2188 3692 1.004610 GATGACATGTGGATGTTCGCG 60.005 52.381 1.15 0.00 43.22 5.87
2189 3693 1.331756 GGATGACATGTGGATGTTCGC 59.668 52.381 1.15 0.00 43.22 4.70
2190 3694 1.594397 CGGATGACATGTGGATGTTCG 59.406 52.381 1.15 0.00 43.22 3.95
2191 3695 2.868583 CTCGGATGACATGTGGATGTTC 59.131 50.000 1.15 0.00 43.22 3.18
2192 3696 2.910199 CTCGGATGACATGTGGATGTT 58.090 47.619 1.15 0.00 43.22 2.71
2193 3697 1.473965 GCTCGGATGACATGTGGATGT 60.474 52.381 1.15 0.00 46.01 3.06
2194 3698 1.202615 AGCTCGGATGACATGTGGATG 60.203 52.381 1.15 0.00 35.49 3.51
2195 3699 1.069823 GAGCTCGGATGACATGTGGAT 59.930 52.381 1.15 0.00 0.00 3.41
2196 3700 0.461548 GAGCTCGGATGACATGTGGA 59.538 55.000 1.15 0.00 0.00 4.02
2197 3701 0.176449 TGAGCTCGGATGACATGTGG 59.824 55.000 1.15 0.00 0.00 4.17
2198 3702 2.014335 TTGAGCTCGGATGACATGTG 57.986 50.000 1.15 0.00 0.00 3.21
2199 3703 2.768253 TTTGAGCTCGGATGACATGT 57.232 45.000 9.64 0.00 0.00 3.21
2200 3704 2.223203 GCTTTTGAGCTCGGATGACATG 60.223 50.000 9.64 0.00 0.00 3.21
2201 3705 2.012673 GCTTTTGAGCTCGGATGACAT 58.987 47.619 9.64 0.00 0.00 3.06
2202 3706 1.002430 AGCTTTTGAGCTCGGATGACA 59.998 47.619 9.64 0.00 42.12 3.58
2203 3707 1.396301 CAGCTTTTGAGCTCGGATGAC 59.604 52.381 9.64 0.00 44.30 3.06
2204 3708 1.002430 ACAGCTTTTGAGCTCGGATGA 59.998 47.619 9.64 0.00 44.30 2.92
2205 3709 1.129998 CACAGCTTTTGAGCTCGGATG 59.870 52.381 9.64 10.35 44.30 3.51
2206 3710 1.446907 CACAGCTTTTGAGCTCGGAT 58.553 50.000 9.64 0.00 44.30 4.18
2207 3711 1.230635 GCACAGCTTTTGAGCTCGGA 61.231 55.000 9.64 0.00 44.30 4.55
2208 3712 1.208614 GCACAGCTTTTGAGCTCGG 59.791 57.895 9.64 0.40 44.30 4.63
2209 3713 0.385223 GTGCACAGCTTTTGAGCTCG 60.385 55.000 13.17 0.00 44.30 5.03
2210 3714 0.664761 TGTGCACAGCTTTTGAGCTC 59.335 50.000 17.42 6.82 44.30 4.09
2211 3715 5.579570 CTGTTGTGCACAGCTTTTGAGCT 62.580 47.826 30.06 0.00 46.70 4.09
2212 3716 1.203065 GTTGTGCACAGCTTTTGAGC 58.797 50.000 24.56 0.00 42.84 4.26
2213 3717 2.456989 CTGTTGTGCACAGCTTTTGAG 58.543 47.619 30.06 17.19 46.70 3.02
2214 3718 2.565210 CTGTTGTGCACAGCTTTTGA 57.435 45.000 30.06 12.08 46.70 2.69
2222 3726 1.742831 GACTGTTTCCTGTTGTGCACA 59.257 47.619 17.42 17.42 0.00 4.57
2223 3727 1.742831 TGACTGTTTCCTGTTGTGCAC 59.257 47.619 10.75 10.75 0.00 4.57
2224 3728 2.016318 CTGACTGTTTCCTGTTGTGCA 58.984 47.619 0.00 0.00 0.00 4.57
2225 3729 1.334869 CCTGACTGTTTCCTGTTGTGC 59.665 52.381 0.00 0.00 0.00 4.57
2226 3730 2.917933 TCCTGACTGTTTCCTGTTGTG 58.082 47.619 0.00 0.00 0.00 3.33
2227 3731 3.136443 TGATCCTGACTGTTTCCTGTTGT 59.864 43.478 0.00 0.00 0.00 3.32
2228 3732 3.743521 TGATCCTGACTGTTTCCTGTTG 58.256 45.455 0.00 0.00 0.00 3.33
2229 3733 4.437682 TTGATCCTGACTGTTTCCTGTT 57.562 40.909 0.00 0.00 0.00 3.16
2230 3734 4.647564 ATTGATCCTGACTGTTTCCTGT 57.352 40.909 0.00 0.00 0.00 4.00
2231 3735 5.706916 CAAATTGATCCTGACTGTTTCCTG 58.293 41.667 0.00 0.00 0.00 3.86
2232 3736 4.219288 GCAAATTGATCCTGACTGTTTCCT 59.781 41.667 0.00 0.00 0.00 3.36
2233 3737 4.219288 AGCAAATTGATCCTGACTGTTTCC 59.781 41.667 0.00 0.00 0.00 3.13
2234 3738 5.048504 TGAGCAAATTGATCCTGACTGTTTC 60.049 40.000 8.86 0.00 30.48 2.78
2235 3739 4.828939 TGAGCAAATTGATCCTGACTGTTT 59.171 37.500 8.86 0.00 30.48 2.83
2236 3740 4.401022 TGAGCAAATTGATCCTGACTGTT 58.599 39.130 8.86 0.00 30.48 3.16
2237 3741 4.025040 TGAGCAAATTGATCCTGACTGT 57.975 40.909 8.86 0.00 30.48 3.55
2238 3742 5.381174 TTTGAGCAAATTGATCCTGACTG 57.619 39.130 8.86 0.00 30.48 3.51
2239 3743 5.302568 TGTTTTGAGCAAATTGATCCTGACT 59.697 36.000 8.86 0.00 30.48 3.41
2240 3744 5.531634 TGTTTTGAGCAAATTGATCCTGAC 58.468 37.500 8.86 5.15 30.48 3.51
2241 3745 5.302568 ACTGTTTTGAGCAAATTGATCCTGA 59.697 36.000 8.86 0.00 30.48 3.86
2242 3746 5.535333 ACTGTTTTGAGCAAATTGATCCTG 58.465 37.500 8.86 0.47 30.48 3.86
2243 3747 5.796424 ACTGTTTTGAGCAAATTGATCCT 57.204 34.783 8.86 0.00 30.48 3.24
2244 3748 6.703165 AGAAACTGTTTTGAGCAAATTGATCC 59.297 34.615 8.86 0.00 30.48 3.36
2245 3749 7.704789 AGAAACTGTTTTGAGCAAATTGATC 57.295 32.000 7.28 4.04 32.56 2.92
2246 3750 8.416329 AGTAGAAACTGTTTTGAGCAAATTGAT 58.584 29.630 7.28 0.00 33.57 2.57
2247 3751 7.771183 AGTAGAAACTGTTTTGAGCAAATTGA 58.229 30.769 7.28 0.00 33.57 2.57
2248 3752 7.992180 AGTAGAAACTGTTTTGAGCAAATTG 57.008 32.000 7.28 0.00 33.57 2.32
2249 3753 8.903820 ACTAGTAGAAACTGTTTTGAGCAAATT 58.096 29.630 7.28 0.00 36.36 1.82
2250 3754 8.451908 ACTAGTAGAAACTGTTTTGAGCAAAT 57.548 30.769 7.28 0.00 36.36 2.32
2251 3755 7.859325 ACTAGTAGAAACTGTTTTGAGCAAA 57.141 32.000 7.28 0.00 36.36 3.68
2252 3756 7.859325 AACTAGTAGAAACTGTTTTGAGCAA 57.141 32.000 7.28 0.00 36.36 3.91
2253 3757 9.555727 AATAACTAGTAGAAACTGTTTTGAGCA 57.444 29.630 7.28 0.00 36.36 4.26
2279 3783 7.066284 GGCTGCACTTTTATCTTCAGAAGATTA 59.934 37.037 27.23 17.64 45.75 1.75
2282 3786 4.697352 GGCTGCACTTTTATCTTCAGAAGA 59.303 41.667 15.44 15.44 42.69 2.87
2287 3791 3.084039 CAGGGCTGCACTTTTATCTTCA 58.916 45.455 0.00 0.00 0.00 3.02
2288 3792 3.347216 TCAGGGCTGCACTTTTATCTTC 58.653 45.455 0.00 0.00 0.00 2.87
2291 3795 4.519540 TTTTCAGGGCTGCACTTTTATC 57.480 40.909 0.00 0.00 0.00 1.75
2293 3797 3.449018 TGTTTTTCAGGGCTGCACTTTTA 59.551 39.130 0.00 0.00 0.00 1.52
2296 3800 1.484038 TGTTTTTCAGGGCTGCACTT 58.516 45.000 0.00 0.00 0.00 3.16
2297 3801 1.615392 GATGTTTTTCAGGGCTGCACT 59.385 47.619 0.00 0.00 0.00 4.40
2298 3802 1.337167 GGATGTTTTTCAGGGCTGCAC 60.337 52.381 0.50 0.00 0.00 4.57
2300 3804 0.968405 TGGATGTTTTTCAGGGCTGC 59.032 50.000 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.