Multiple sequence alignment - TraesCS4A01G046400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G046400 chr4A 100.000 3191 0 0 1 3191 37832670 37835860 0.000000e+00 5893.0
1 TraesCS4A01G046400 chr4A 99.278 1939 9 2 318 2251 38664035 38662097 0.000000e+00 3498.0
2 TraesCS4A01G046400 chr4A 85.628 1976 167 53 368 2252 37999339 38001288 0.000000e+00 1967.0
3 TraesCS4A01G046400 chr4A 77.926 1649 231 70 1008 2608 38682756 38681193 0.000000e+00 905.0
4 TraesCS4A01G046400 chr4A 77.255 1297 214 44 998 2246 40260874 40262137 0.000000e+00 686.0
5 TraesCS4A01G046400 chr4A 92.063 252 18 1 2940 3191 640204712 640204463 1.410000e-93 353.0
6 TraesCS4A01G046400 chr4A 88.550 262 24 4 2344 2603 38662005 38661748 2.390000e-81 313.0
7 TraesCS4A01G046400 chr4A 89.320 206 16 4 2367 2568 38001398 38001601 1.470000e-63 254.0
8 TraesCS4A01G046400 chr4A 89.157 166 18 0 2939 3104 612665313 612665148 1.160000e-49 207.0
9 TraesCS4A01G046400 chr4A 91.156 147 13 0 2936 3082 631580741 631580887 1.940000e-47 200.0
10 TraesCS4A01G046400 chr4A 91.156 147 13 0 2936 3082 631581855 631582001 1.940000e-47 200.0
11 TraesCS4A01G046400 chr4A 92.647 136 10 0 58 193 37999084 37999219 2.510000e-46 196.0
12 TraesCS4A01G046400 chr4B 91.693 2251 92 34 30 2237 522681261 522683459 0.000000e+00 3033.0
13 TraesCS4A01G046400 chr4B 86.566 1593 133 32 690 2210 524901201 524899618 0.000000e+00 1681.0
14 TraesCS4A01G046400 chr4B 83.987 1199 135 25 924 2083 522677162 522678342 0.000000e+00 1098.0
15 TraesCS4A01G046400 chr4B 88.235 561 32 13 367 894 526959869 526960428 9.650000e-180 640.0
16 TraesCS4A01G046400 chr4B 86.436 376 39 9 2298 2668 522683431 522683799 4.960000e-108 401.0
17 TraesCS4A01G046400 chr4B 83.333 360 38 14 2265 2614 524899609 524899262 2.390000e-81 313.0
18 TraesCS4A01G046400 chr4B 80.398 352 35 19 2265 2608 522670691 522671016 1.480000e-58 237.0
19 TraesCS4A01G046400 chr4B 87.831 189 21 2 65 252 526959657 526959844 1.490000e-53 220.0
20 TraesCS4A01G046400 chr4B 89.189 148 15 1 58 205 524901827 524901681 1.960000e-42 183.0
21 TraesCS4A01G046400 chr4B 97.059 68 2 0 379 446 524901491 524901424 7.230000e-22 115.0
22 TraesCS4A01G046400 chr4D 91.270 1764 92 36 735 2453 427014230 427015976 0.000000e+00 2348.0
23 TraesCS4A01G046400 chr4D 89.482 1911 81 50 367 2237 428558885 428557055 0.000000e+00 2305.0
24 TraesCS4A01G046400 chr4D 93.929 1499 50 23 738 2202 427322378 427323869 0.000000e+00 2226.0
25 TraesCS4A01G046400 chr4D 84.779 1787 163 48 479 2172 428398450 428396680 0.000000e+00 1692.0
26 TraesCS4A01G046400 chr4D 83.951 1215 124 19 1009 2192 427267952 427269126 0.000000e+00 1098.0
27 TraesCS4A01G046400 chr4D 78.227 1286 206 39 1001 2246 423989777 423988526 0.000000e+00 756.0
28 TraesCS4A01G046400 chr4D 90.313 351 27 4 368 714 427013222 427013569 1.350000e-123 453.0
29 TraesCS4A01G046400 chr4D 92.698 315 11 4 2295 2608 428547207 428546904 8.120000e-121 444.0
30 TraesCS4A01G046400 chr4D 89.443 341 29 4 377 713 427319838 427320175 1.060000e-114 424.0
31 TraesCS4A01G046400 chr4D 94.424 269 4 3 2298 2566 428557083 428556826 1.380000e-108 403.0
32 TraesCS4A01G046400 chr4D 90.572 297 23 5 2315 2608 427323878 427324172 3.860000e-104 388.0
33 TraesCS4A01G046400 chr4D 83.333 354 45 11 2260 2608 427261683 427262027 6.640000e-82 315.0
34 TraesCS4A01G046400 chr4D 83.526 346 31 16 2265 2608 426871528 426871849 1.860000e-77 300.0
35 TraesCS4A01G046400 chr4D 89.302 215 17 1 58 266 428559104 428558890 6.790000e-67 265.0
36 TraesCS4A01G046400 chr4D 93.878 98 6 0 96 193 428398795 428398698 7.130000e-32 148.0
37 TraesCS4A01G046400 chr4D 98.148 54 0 1 377 429 428398503 428398450 3.390000e-15 93.5
38 TraesCS4A01G046400 chr4D 88.406 69 1 3 2607 2668 428556800 428556732 3.410000e-10 76.8
39 TraesCS4A01G046400 chr7A 96.281 242 8 1 2666 2906 699150516 699150275 2.310000e-106 396.0
40 TraesCS4A01G046400 chr7A 94.758 248 12 1 2660 2906 722869447 722869200 4.990000e-103 385.0
41 TraesCS4A01G046400 chr7A 89.423 104 11 0 58 161 651735229 651735332 7.180000e-27 132.0
42 TraesCS4A01G046400 chr1A 93.870 261 14 2 2664 2923 506278025 506278284 2.980000e-105 392.0
43 TraesCS4A01G046400 chr1A 92.095 253 18 1 2939 3191 465431754 465431504 3.920000e-94 355.0
44 TraesCS4A01G046400 chr1A 91.051 257 22 1 2936 3191 405822326 405822582 2.360000e-91 346.0
45 TraesCS4A01G046400 chr3A 95.868 242 9 1 2666 2906 246041516 246041757 1.070000e-104 390.0
46 TraesCS4A01G046400 chr3A 95.455 242 10 1 2667 2907 500983277 500983518 4.990000e-103 385.0
47 TraesCS4A01G046400 chr3A 86.957 253 16 3 2939 3191 707138410 707138175 5.250000e-68 268.0
48 TraesCS4A01G046400 chr3B 95.455 242 10 1 2666 2906 8013679 8013438 4.990000e-103 385.0
49 TraesCS4A01G046400 chr5A 94.737 247 12 1 2661 2906 99729451 99729697 1.800000e-102 383.0
50 TraesCS4A01G046400 chr2B 94.118 255 10 4 2657 2906 235906621 235906875 1.800000e-102 383.0
51 TraesCS4A01G046400 chr2A 93.411 258 16 1 2650 2906 84977512 84977769 6.460000e-102 381.0
52 TraesCS4A01G046400 chr2A 91.797 256 17 3 2937 3191 160011853 160012105 1.410000e-93 353.0
53 TraesCS4A01G046400 chr6A 90.643 171 12 1 2936 3106 560106699 560106865 1.150000e-54 224.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G046400 chr4A 37832670 37835860 3190 False 5893.000000 5893 100.000000 1 3191 1 chr4A.!!$F1 3190
1 TraesCS4A01G046400 chr4A 38661748 38664035 2287 True 1905.500000 3498 93.914000 318 2603 2 chr4A.!!$R4 2285
2 TraesCS4A01G046400 chr4A 38681193 38682756 1563 True 905.000000 905 77.926000 1008 2608 1 chr4A.!!$R1 1600
3 TraesCS4A01G046400 chr4A 37999084 38001601 2517 False 805.666667 1967 89.198333 58 2568 3 chr4A.!!$F3 2510
4 TraesCS4A01G046400 chr4A 40260874 40262137 1263 False 686.000000 686 77.255000 998 2246 1 chr4A.!!$F2 1248
5 TraesCS4A01G046400 chr4B 522677162 522683799 6637 False 1510.666667 3033 87.372000 30 2668 3 chr4B.!!$F2 2638
6 TraesCS4A01G046400 chr4B 524899262 524901827 2565 True 573.000000 1681 89.036750 58 2614 4 chr4B.!!$R1 2556
7 TraesCS4A01G046400 chr4B 526959657 526960428 771 False 430.000000 640 88.033000 65 894 2 chr4B.!!$F3 829
8 TraesCS4A01G046400 chr4D 427013222 427015976 2754 False 1400.500000 2348 90.791500 368 2453 2 chr4D.!!$F4 2085
9 TraesCS4A01G046400 chr4D 427267952 427269126 1174 False 1098.000000 1098 83.951000 1009 2192 1 chr4D.!!$F3 1183
10 TraesCS4A01G046400 chr4D 427319838 427324172 4334 False 1012.666667 2226 91.314667 377 2608 3 chr4D.!!$F5 2231
11 TraesCS4A01G046400 chr4D 428556732 428559104 2372 True 762.450000 2305 90.403500 58 2668 4 chr4D.!!$R4 2610
12 TraesCS4A01G046400 chr4D 423988526 423989777 1251 True 756.000000 756 78.227000 1001 2246 1 chr4D.!!$R1 1245
13 TraesCS4A01G046400 chr4D 428396680 428398795 2115 True 644.500000 1692 92.268333 96 2172 3 chr4D.!!$R3 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 4405 0.698818 AATCAGGGTGAGTGGGGAAC 59.301 55.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 8930 0.607217 TGGCTCATCCAAGCACACAG 60.607 55.0 0.0 0.0 43.21 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 4126 6.050432 ACATGTCATGAAAACAAGCAATTGT 58.950 32.000 19.77 0.00 36.59 2.71
63 4134 3.883830 AACAAGCAATTGTGGTTCACA 57.116 38.095 7.40 0.00 43.55 3.58
74 4145 4.852134 TGTGGTTCACATTTCCAGAATG 57.148 40.909 0.00 0.00 39.62 2.67
90 4162 5.356190 TCCAGAATGCTTCAATCAGACAATC 59.644 40.000 0.00 0.00 31.97 2.67
129 4202 1.143813 ATGATCCTAGTGGGCAAGGG 58.856 55.000 0.00 0.00 33.40 3.95
186 4259 6.655003 TGAACTATCTGAACCTGAACATTTCC 59.345 38.462 0.00 0.00 0.00 3.13
187 4260 5.501156 ACTATCTGAACCTGAACATTTCCC 58.499 41.667 0.00 0.00 0.00 3.97
193 4266 4.340950 TGAACCTGAACATTTCCCAAGAAC 59.659 41.667 0.00 0.00 0.00 3.01
203 4276 0.830648 TCCCAAGAACTCCATAGCGG 59.169 55.000 0.00 0.00 0.00 5.52
282 4361 5.821470 CAAGAATTGTCAGGATCACTGCTAT 59.179 40.000 0.00 0.00 41.61 2.97
292 4371 6.810911 CAGGATCACTGCTATACTTTGTAGT 58.189 40.000 0.00 0.00 40.97 2.73
323 4402 0.921896 ATGAATCAGGGTGAGTGGGG 59.078 55.000 0.00 0.00 0.00 4.96
325 4404 0.991920 GAATCAGGGTGAGTGGGGAA 59.008 55.000 0.00 0.00 0.00 3.97
326 4405 0.698818 AATCAGGGTGAGTGGGGAAC 59.301 55.000 0.00 0.00 0.00 3.62
338 4423 3.053896 GGGAACGCCCGAGGTTTG 61.054 66.667 0.00 0.00 46.48 2.93
339 4424 2.281276 GGAACGCCCGAGGTTTGT 60.281 61.111 0.00 0.00 0.00 2.83
365 4450 2.267426 CATTTCGTGTGCTACCGATCA 58.733 47.619 0.00 0.00 32.44 2.92
2039 8620 0.108804 TGGTTCGATGCTCCTCGTTC 60.109 55.000 0.00 0.62 39.62 3.95
2040 8621 0.806492 GGTTCGATGCTCCTCGTTCC 60.806 60.000 0.00 4.87 39.62 3.62
2041 8622 1.138883 TTCGATGCTCCTCGTTCCG 59.861 57.895 0.00 0.00 39.62 4.30
2042 8623 2.884087 TTCGATGCTCCTCGTTCCGC 62.884 60.000 0.00 0.00 39.62 5.54
2043 8624 2.586357 GATGCTCCTCGTTCCGCC 60.586 66.667 0.00 0.00 0.00 6.13
2044 8625 4.514577 ATGCTCCTCGTTCCGCCG 62.515 66.667 0.00 0.00 0.00 6.46
2246 8874 8.102800 TGATAAGCCATCTATGTAAATGCTTG 57.897 34.615 11.35 0.00 34.46 4.01
2247 8875 4.843220 AGCCATCTATGTAAATGCTTGC 57.157 40.909 0.00 0.00 0.00 4.01
2248 8876 4.209538 AGCCATCTATGTAAATGCTTGCA 58.790 39.130 0.00 0.00 0.00 4.08
2249 8877 4.831155 AGCCATCTATGTAAATGCTTGCAT 59.169 37.500 1.81 1.81 40.50 3.96
2250 8878 6.005823 AGCCATCTATGTAAATGCTTGCATA 58.994 36.000 8.61 0.00 38.61 3.14
2251 8879 6.491062 AGCCATCTATGTAAATGCTTGCATAA 59.509 34.615 8.61 0.00 38.95 1.90
2252 8880 6.805271 GCCATCTATGTAAATGCTTGCATAAG 59.195 38.462 8.61 1.33 38.95 1.73
2296 8924 6.825213 TGCTTGCATAAACTCTCTTGATGTAT 59.175 34.615 0.00 0.00 0.00 2.29
2298 8926 7.642978 GCTTGCATAAACTCTCTTGATGTATTG 59.357 37.037 0.00 0.00 0.00 1.90
2299 8927 8.565896 TTGCATAAACTCTCTTGATGTATTGT 57.434 30.769 0.00 0.00 0.00 2.71
2300 8928 9.665719 TTGCATAAACTCTCTTGATGTATTGTA 57.334 29.630 0.00 0.00 0.00 2.41
2301 8929 9.665719 TGCATAAACTCTCTTGATGTATTGTAA 57.334 29.630 0.00 0.00 0.00 2.41
2302 8930 9.922305 GCATAAACTCTCTTGATGTATTGTAAC 57.078 33.333 0.00 0.00 0.00 2.50
2476 9160 2.289195 CCATTTGAGTGCTGGCATGTTT 60.289 45.455 0.00 0.00 0.00 2.83
2511 9196 8.094548 TGCTCAGTTGTTATTGAGTTATACTGT 58.905 33.333 0.00 0.00 42.17 3.55
2623 9314 8.212312 TGGATGAGTTGGTACTAGTTAAACAAA 58.788 33.333 0.00 0.00 33.84 2.83
2668 9366 6.554334 TGCAGGTTTCTTACTGTGAAATAC 57.446 37.500 0.00 0.00 36.10 1.89
2669 9367 6.296026 TGCAGGTTTCTTACTGTGAAATACT 58.704 36.000 0.00 0.00 36.10 2.12
2670 9368 6.426937 TGCAGGTTTCTTACTGTGAAATACTC 59.573 38.462 0.00 0.00 36.10 2.59
2671 9369 6.651225 GCAGGTTTCTTACTGTGAAATACTCT 59.349 38.462 0.00 0.00 36.10 3.24
2672 9370 7.148557 GCAGGTTTCTTACTGTGAAATACTCTC 60.149 40.741 0.00 0.00 36.10 3.20
2673 9371 8.091449 CAGGTTTCTTACTGTGAAATACTCTCT 58.909 37.037 0.00 0.00 36.10 3.10
2674 9372 8.308207 AGGTTTCTTACTGTGAAATACTCTCTC 58.692 37.037 0.00 0.00 36.10 3.20
2675 9373 7.546316 GGTTTCTTACTGTGAAATACTCTCTCC 59.454 40.741 0.00 0.00 36.10 3.71
2676 9374 7.776618 TTCTTACTGTGAAATACTCTCTCCA 57.223 36.000 0.00 0.00 0.00 3.86
2677 9375 7.962995 TCTTACTGTGAAATACTCTCTCCAT 57.037 36.000 0.00 0.00 0.00 3.41
2678 9376 8.367660 TCTTACTGTGAAATACTCTCTCCATT 57.632 34.615 0.00 0.00 0.00 3.16
2679 9377 8.470805 TCTTACTGTGAAATACTCTCTCCATTC 58.529 37.037 0.00 0.00 0.00 2.67
2680 9378 5.983540 ACTGTGAAATACTCTCTCCATTCC 58.016 41.667 0.00 0.00 0.00 3.01
2681 9379 5.485353 ACTGTGAAATACTCTCTCCATTCCA 59.515 40.000 0.00 0.00 0.00 3.53
2682 9380 6.157645 ACTGTGAAATACTCTCTCCATTCCAT 59.842 38.462 0.00 0.00 0.00 3.41
2683 9381 7.345653 ACTGTGAAATACTCTCTCCATTCCATA 59.654 37.037 0.00 0.00 0.00 2.74
2684 9382 8.089625 TGTGAAATACTCTCTCCATTCCATAA 57.910 34.615 0.00 0.00 0.00 1.90
2685 9383 8.717717 TGTGAAATACTCTCTCCATTCCATAAT 58.282 33.333 0.00 0.00 0.00 1.28
2686 9384 8.997323 GTGAAATACTCTCTCCATTCCATAATG 58.003 37.037 0.00 0.00 41.90 1.90
2687 9385 8.717717 TGAAATACTCTCTCCATTCCATAATGT 58.282 33.333 0.00 0.00 40.84 2.71
2690 9388 8.964533 ATACTCTCTCCATTCCATAATGTAGT 57.035 34.615 0.00 0.00 40.84 2.73
2691 9389 7.060383 ACTCTCTCCATTCCATAATGTAGTG 57.940 40.000 0.00 0.00 40.84 2.74
2692 9390 5.858381 TCTCTCCATTCCATAATGTAGTGC 58.142 41.667 0.00 0.00 40.84 4.40
2693 9391 5.604231 TCTCTCCATTCCATAATGTAGTGCT 59.396 40.000 0.00 0.00 40.84 4.40
2694 9392 6.100279 TCTCTCCATTCCATAATGTAGTGCTT 59.900 38.462 0.00 0.00 40.84 3.91
2695 9393 6.291377 TCTCCATTCCATAATGTAGTGCTTC 58.709 40.000 0.00 0.00 40.84 3.86
2696 9394 5.376625 TCCATTCCATAATGTAGTGCTTCC 58.623 41.667 0.00 0.00 40.84 3.46
2697 9395 5.132648 TCCATTCCATAATGTAGTGCTTCCT 59.867 40.000 0.00 0.00 40.84 3.36
2698 9396 5.471456 CCATTCCATAATGTAGTGCTTCCTC 59.529 44.000 0.00 0.00 40.84 3.71
2699 9397 5.957771 TTCCATAATGTAGTGCTTCCTCT 57.042 39.130 0.00 0.00 0.00 3.69
2700 9398 7.445121 CATTCCATAATGTAGTGCTTCCTCTA 58.555 38.462 0.00 0.00 38.15 2.43
2701 9399 7.618019 TTCCATAATGTAGTGCTTCCTCTAT 57.382 36.000 0.00 0.00 0.00 1.98
2702 9400 7.233389 TCCATAATGTAGTGCTTCCTCTATC 57.767 40.000 0.00 0.00 0.00 2.08
2703 9401 6.211584 TCCATAATGTAGTGCTTCCTCTATCC 59.788 42.308 0.00 0.00 0.00 2.59
2704 9402 6.014242 CCATAATGTAGTGCTTCCTCTATCCA 60.014 42.308 0.00 0.00 0.00 3.41
2705 9403 4.946478 ATGTAGTGCTTCCTCTATCCAC 57.054 45.455 0.00 0.00 0.00 4.02
2706 9404 2.688446 TGTAGTGCTTCCTCTATCCACG 59.312 50.000 0.00 0.00 0.00 4.94
2707 9405 1.853963 AGTGCTTCCTCTATCCACGT 58.146 50.000 0.00 0.00 0.00 4.49
2708 9406 1.478510 AGTGCTTCCTCTATCCACGTG 59.521 52.381 9.08 9.08 0.00 4.49
2709 9407 1.476891 GTGCTTCCTCTATCCACGTGA 59.523 52.381 19.30 3.36 0.00 4.35
2710 9408 2.101582 GTGCTTCCTCTATCCACGTGAT 59.898 50.000 19.30 11.17 37.49 3.06
2711 9409 2.766263 TGCTTCCTCTATCCACGTGATT 59.234 45.455 19.30 6.26 34.76 2.57
2712 9410 3.181475 TGCTTCCTCTATCCACGTGATTC 60.181 47.826 19.30 0.00 34.76 2.52
2713 9411 3.181475 GCTTCCTCTATCCACGTGATTCA 60.181 47.826 19.30 0.00 34.76 2.57
2714 9412 4.680708 GCTTCCTCTATCCACGTGATTCAA 60.681 45.833 19.30 0.00 34.76 2.69
2715 9413 4.386867 TCCTCTATCCACGTGATTCAAC 57.613 45.455 19.30 0.00 34.76 3.18
2716 9414 4.023980 TCCTCTATCCACGTGATTCAACT 58.976 43.478 19.30 0.00 34.76 3.16
2717 9415 4.466370 TCCTCTATCCACGTGATTCAACTT 59.534 41.667 19.30 0.00 34.76 2.66
2718 9416 5.046591 TCCTCTATCCACGTGATTCAACTTT 60.047 40.000 19.30 0.00 34.76 2.66
2719 9417 5.063944 CCTCTATCCACGTGATTCAACTTTG 59.936 44.000 19.30 0.00 34.76 2.77
2720 9418 5.789521 TCTATCCACGTGATTCAACTTTGA 58.210 37.500 19.30 1.27 34.76 2.69
2721 9419 4.749245 ATCCACGTGATTCAACTTTGAC 57.251 40.909 19.30 0.00 36.83 3.18
2722 9420 2.875933 TCCACGTGATTCAACTTTGACC 59.124 45.455 19.30 0.00 36.83 4.02
2723 9421 2.349438 CCACGTGATTCAACTTTGACCG 60.349 50.000 19.30 0.00 36.83 4.79
2724 9422 2.286833 CACGTGATTCAACTTTGACCGT 59.713 45.455 10.90 0.00 36.83 4.83
2725 9423 3.491639 CACGTGATTCAACTTTGACCGTA 59.508 43.478 10.90 0.00 36.83 4.02
2726 9424 4.025563 CACGTGATTCAACTTTGACCGTAA 60.026 41.667 10.90 0.00 36.83 3.18
2727 9425 4.571580 ACGTGATTCAACTTTGACCGTAAA 59.428 37.500 0.00 0.00 36.83 2.01
2728 9426 5.237779 ACGTGATTCAACTTTGACCGTAAAT 59.762 36.000 0.00 0.00 36.83 1.40
2729 9427 6.140110 CGTGATTCAACTTTGACCGTAAATT 58.860 36.000 0.00 0.00 36.83 1.82
2730 9428 6.635239 CGTGATTCAACTTTGACCGTAAATTT 59.365 34.615 0.00 0.00 36.83 1.82
2731 9429 7.799447 CGTGATTCAACTTTGACCGTAAATTTA 59.201 33.333 0.00 0.00 36.83 1.40
2732 9430 9.453325 GTGATTCAACTTTGACCGTAAATTTAA 57.547 29.630 0.00 0.00 36.83 1.52
2733 9431 9.453325 TGATTCAACTTTGACCGTAAATTTAAC 57.547 29.630 0.00 0.00 36.83 2.01
2734 9432 9.673454 GATTCAACTTTGACCGTAAATTTAACT 57.327 29.630 0.00 0.00 36.83 2.24
2736 9434 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
2737 9435 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
2738 9436 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
2739 9437 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
2740 9438 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
2741 9439 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
2742 9440 7.656707 TGACCGTAAATTTAACTACCAAGAC 57.343 36.000 0.00 0.00 0.00 3.01
2743 9441 6.650390 TGACCGTAAATTTAACTACCAAGACC 59.350 38.462 0.00 0.00 0.00 3.85
2744 9442 5.639082 ACCGTAAATTTAACTACCAAGACCG 59.361 40.000 0.00 0.00 0.00 4.79
2745 9443 5.868801 CCGTAAATTTAACTACCAAGACCGA 59.131 40.000 0.00 0.00 0.00 4.69
2746 9444 6.536224 CCGTAAATTTAACTACCAAGACCGAT 59.464 38.462 0.00 0.00 0.00 4.18
2747 9445 7.064966 CCGTAAATTTAACTACCAAGACCGATT 59.935 37.037 0.00 0.00 0.00 3.34
2748 9446 7.901377 CGTAAATTTAACTACCAAGACCGATTG 59.099 37.037 0.00 0.00 0.00 2.67
2749 9447 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
2750 9448 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
2778 9476 9.520204 CGGAAGCAAAAATTATATCAGTGAATT 57.480 29.630 0.00 0.00 0.00 2.17
2830 9528 1.515081 TTTTCTTCCGCCGTAGTTGG 58.485 50.000 0.00 0.00 0.00 3.77
2831 9529 0.393820 TTTCTTCCGCCGTAGTTGGT 59.606 50.000 0.00 0.00 0.00 3.67
2832 9530 0.037975 TTCTTCCGCCGTAGTTGGTC 60.038 55.000 0.00 0.00 0.00 4.02
2833 9531 0.896940 TCTTCCGCCGTAGTTGGTCT 60.897 55.000 0.00 0.00 0.00 3.85
2834 9532 0.458025 CTTCCGCCGTAGTTGGTCTC 60.458 60.000 0.00 0.00 0.00 3.36
2835 9533 2.202570 CCGCCGTAGTTGGTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
2836 9534 2.564975 CGCCGTAGTTGGTCTCGT 59.435 61.111 0.00 0.00 0.00 4.18
2837 9535 1.080974 CGCCGTAGTTGGTCTCGTT 60.081 57.895 0.00 0.00 0.00 3.85
2838 9536 1.342082 CGCCGTAGTTGGTCTCGTTG 61.342 60.000 0.00 0.00 0.00 4.10
2839 9537 1.012486 GCCGTAGTTGGTCTCGTTGG 61.012 60.000 0.00 0.00 0.00 3.77
2840 9538 0.316204 CCGTAGTTGGTCTCGTTGGT 59.684 55.000 0.00 0.00 0.00 3.67
2841 9539 1.269936 CCGTAGTTGGTCTCGTTGGTT 60.270 52.381 0.00 0.00 0.00 3.67
2842 9540 2.030007 CCGTAGTTGGTCTCGTTGGTTA 60.030 50.000 0.00 0.00 0.00 2.85
2843 9541 3.552684 CCGTAGTTGGTCTCGTTGGTTAA 60.553 47.826 0.00 0.00 0.00 2.01
2844 9542 4.240096 CGTAGTTGGTCTCGTTGGTTAAT 58.760 43.478 0.00 0.00 0.00 1.40
2845 9543 4.687483 CGTAGTTGGTCTCGTTGGTTAATT 59.313 41.667 0.00 0.00 0.00 1.40
2846 9544 5.178067 CGTAGTTGGTCTCGTTGGTTAATTT 59.822 40.000 0.00 0.00 0.00 1.82
2847 9545 6.365789 CGTAGTTGGTCTCGTTGGTTAATTTA 59.634 38.462 0.00 0.00 0.00 1.40
2848 9546 7.063780 CGTAGTTGGTCTCGTTGGTTAATTTAT 59.936 37.037 0.00 0.00 0.00 1.40
2849 9547 7.141100 AGTTGGTCTCGTTGGTTAATTTATG 57.859 36.000 0.00 0.00 0.00 1.90
2850 9548 6.150474 AGTTGGTCTCGTTGGTTAATTTATGG 59.850 38.462 0.00 0.00 0.00 2.74
2851 9549 5.562635 TGGTCTCGTTGGTTAATTTATGGT 58.437 37.500 0.00 0.00 0.00 3.55
2852 9550 5.644636 TGGTCTCGTTGGTTAATTTATGGTC 59.355 40.000 0.00 0.00 0.00 4.02
2853 9551 5.644636 GGTCTCGTTGGTTAATTTATGGTCA 59.355 40.000 0.00 0.00 0.00 4.02
2854 9552 6.149807 GGTCTCGTTGGTTAATTTATGGTCAA 59.850 38.462 0.00 0.00 0.00 3.18
2855 9553 7.308710 GGTCTCGTTGGTTAATTTATGGTCAAA 60.309 37.037 0.00 0.00 0.00 2.69
2856 9554 7.749126 GTCTCGTTGGTTAATTTATGGTCAAAG 59.251 37.037 0.00 0.00 0.00 2.77
2857 9555 7.446013 TCTCGTTGGTTAATTTATGGTCAAAGT 59.554 33.333 0.00 0.00 0.00 2.66
2858 9556 7.942990 TCGTTGGTTAATTTATGGTCAAAGTT 58.057 30.769 0.00 0.00 0.00 2.66
2859 9557 7.863375 TCGTTGGTTAATTTATGGTCAAAGTTG 59.137 33.333 0.00 0.00 0.00 3.16
2860 9558 7.115663 CGTTGGTTAATTTATGGTCAAAGTTGG 59.884 37.037 0.00 0.00 0.00 3.77
2861 9559 7.841282 TGGTTAATTTATGGTCAAAGTTGGA 57.159 32.000 0.00 0.00 0.00 3.53
2862 9560 8.429237 TGGTTAATTTATGGTCAAAGTTGGAT 57.571 30.769 0.00 0.00 0.00 3.41
2863 9561 8.527810 TGGTTAATTTATGGTCAAAGTTGGATC 58.472 33.333 0.00 0.00 0.00 3.36
2864 9562 8.749354 GGTTAATTTATGGTCAAAGTTGGATCT 58.251 33.333 0.00 0.00 0.00 2.75
2865 9563 9.788960 GTTAATTTATGGTCAAAGTTGGATCTC 57.211 33.333 0.00 0.00 0.00 2.75
2866 9564 9.527157 TTAATTTATGGTCAAAGTTGGATCTCA 57.473 29.630 0.00 0.00 0.00 3.27
2867 9565 7.636150 ATTTATGGTCAAAGTTGGATCTCAG 57.364 36.000 0.00 0.00 0.00 3.35
2868 9566 3.423539 TGGTCAAAGTTGGATCTCAGG 57.576 47.619 0.00 0.00 0.00 3.86
2869 9567 2.978978 TGGTCAAAGTTGGATCTCAGGA 59.021 45.455 0.00 0.00 0.00 3.86
2870 9568 3.394274 TGGTCAAAGTTGGATCTCAGGAA 59.606 43.478 0.00 0.00 0.00 3.36
2871 9569 4.006319 GGTCAAAGTTGGATCTCAGGAAG 58.994 47.826 0.00 0.00 0.00 3.46
2872 9570 3.438434 GTCAAAGTTGGATCTCAGGAAGC 59.562 47.826 0.00 0.00 0.00 3.86
2873 9571 2.393271 AAGTTGGATCTCAGGAAGCG 57.607 50.000 0.00 0.00 0.00 4.68
2874 9572 0.107945 AGTTGGATCTCAGGAAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
2875 9573 1.153568 TTGGATCTCAGGAAGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
2876 9574 2.279784 GGATCTCAGGAAGCGCGG 60.280 66.667 8.83 0.00 0.00 6.46
2877 9575 2.279784 GATCTCAGGAAGCGCGGG 60.280 66.667 8.83 0.00 0.00 6.13
2878 9576 4.537433 ATCTCAGGAAGCGCGGGC 62.537 66.667 17.92 17.92 40.37 6.13
2889 9587 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
2890 9588 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
2891 9589 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
2892 9590 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
2893 9591 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
2894 9592 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
2895 9593 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
2896 9594 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
2897 9595 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
2898 9596 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
2899 9597 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
2900 9598 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
2901 9599 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
2902 9600 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
2903 9601 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
2904 9602 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
2905 9603 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
2906 9604 7.880195 CACTATATTTTGGAATGGAGGGAGTAG 59.120 40.741 0.00 0.00 0.00 2.57
2907 9605 7.794683 ACTATATTTTGGAATGGAGGGAGTAGA 59.205 37.037 0.00 0.00 0.00 2.59
2908 9606 7.654287 ATATTTTGGAATGGAGGGAGTAGAT 57.346 36.000 0.00 0.00 0.00 1.98
2909 9607 8.757307 ATATTTTGGAATGGAGGGAGTAGATA 57.243 34.615 0.00 0.00 0.00 1.98
2910 9608 6.500589 TTTTGGAATGGAGGGAGTAGATAG 57.499 41.667 0.00 0.00 0.00 2.08
2911 9609 4.133526 TGGAATGGAGGGAGTAGATAGG 57.866 50.000 0.00 0.00 0.00 2.57
2912 9610 3.732742 TGGAATGGAGGGAGTAGATAGGA 59.267 47.826 0.00 0.00 0.00 2.94
2913 9611 4.172041 TGGAATGGAGGGAGTAGATAGGAA 59.828 45.833 0.00 0.00 0.00 3.36
2914 9612 5.155905 GGAATGGAGGGAGTAGATAGGAAA 58.844 45.833 0.00 0.00 0.00 3.13
2915 9613 5.607171 GGAATGGAGGGAGTAGATAGGAAAA 59.393 44.000 0.00 0.00 0.00 2.29
2916 9614 6.273495 GGAATGGAGGGAGTAGATAGGAAAAT 59.727 42.308 0.00 0.00 0.00 1.82
2917 9615 6.943899 ATGGAGGGAGTAGATAGGAAAATC 57.056 41.667 0.00 0.00 0.00 2.17
2918 9616 5.788430 TGGAGGGAGTAGATAGGAAAATCA 58.212 41.667 0.00 0.00 0.00 2.57
2919 9617 6.209774 TGGAGGGAGTAGATAGGAAAATCAA 58.790 40.000 0.00 0.00 0.00 2.57
2920 9618 6.327626 TGGAGGGAGTAGATAGGAAAATCAAG 59.672 42.308 0.00 0.00 0.00 3.02
2921 9619 6.327887 GGAGGGAGTAGATAGGAAAATCAAGT 59.672 42.308 0.00 0.00 0.00 3.16
2922 9620 7.509659 GGAGGGAGTAGATAGGAAAATCAAGTA 59.490 40.741 0.00 0.00 0.00 2.24
2923 9621 8.252624 AGGGAGTAGATAGGAAAATCAAGTAC 57.747 38.462 0.00 0.00 0.00 2.73
2924 9622 7.290481 AGGGAGTAGATAGGAAAATCAAGTACC 59.710 40.741 0.00 0.00 0.00 3.34
2925 9623 7.290481 GGGAGTAGATAGGAAAATCAAGTACCT 59.710 40.741 0.00 0.00 35.11 3.08
2926 9624 8.145122 GGAGTAGATAGGAAAATCAAGTACCTG 58.855 40.741 0.00 0.00 32.90 4.00
2927 9625 7.501844 AGTAGATAGGAAAATCAAGTACCTGC 58.498 38.462 0.00 0.00 32.90 4.85
2928 9626 6.567602 AGATAGGAAAATCAAGTACCTGCT 57.432 37.500 0.00 0.00 32.90 4.24
2929 9627 6.587273 AGATAGGAAAATCAAGTACCTGCTC 58.413 40.000 0.00 0.00 32.90 4.26
2930 9628 4.917906 AGGAAAATCAAGTACCTGCTCT 57.082 40.909 0.00 0.00 0.00 4.09
2931 9629 4.837972 AGGAAAATCAAGTACCTGCTCTC 58.162 43.478 0.00 0.00 0.00 3.20
2932 9630 4.534103 AGGAAAATCAAGTACCTGCTCTCT 59.466 41.667 0.00 0.00 0.00 3.10
2933 9631 4.873259 GGAAAATCAAGTACCTGCTCTCTC 59.127 45.833 0.00 0.00 0.00 3.20
2934 9632 4.479786 AAATCAAGTACCTGCTCTCTCC 57.520 45.455 0.00 0.00 0.00 3.71
2935 9633 1.464734 TCAAGTACCTGCTCTCTCCG 58.535 55.000 0.00 0.00 0.00 4.63
2936 9634 1.178276 CAAGTACCTGCTCTCTCCGT 58.822 55.000 0.00 0.00 0.00 4.69
2937 9635 2.026542 TCAAGTACCTGCTCTCTCCGTA 60.027 50.000 0.00 0.00 0.00 4.02
2938 9636 2.753452 CAAGTACCTGCTCTCTCCGTAA 59.247 50.000 0.00 0.00 0.00 3.18
2939 9637 2.645802 AGTACCTGCTCTCTCCGTAAG 58.354 52.381 0.00 0.00 0.00 2.34
2940 9638 2.239150 AGTACCTGCTCTCTCCGTAAGA 59.761 50.000 0.00 0.00 43.02 2.10
2956 9654 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
2957 9655 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
2958 9656 3.512516 GCATCTCCAACAGGCGCC 61.513 66.667 21.89 21.89 0.00 6.53
2959 9657 3.197790 CATCTCCAACAGGCGCCG 61.198 66.667 23.20 18.60 0.00 6.46
2960 9658 4.473520 ATCTCCAACAGGCGCCGG 62.474 66.667 25.72 25.72 0.00 6.13
2965 9663 4.326766 CAACAGGCGCCGGTTGTG 62.327 66.667 44.62 31.85 43.55 3.33
2994 9692 0.988439 AAAAACAAATATGCCGCGCG 59.012 45.000 25.67 25.67 0.00 6.86
2995 9693 1.409982 AAAACAAATATGCCGCGCGC 61.410 50.000 27.36 23.91 38.31 6.86
2996 9694 4.589700 ACAAATATGCCGCGCGCG 62.590 61.111 43.73 43.73 42.08 6.86
3012 9710 2.480555 CGCATCGCCTGGTTTGAC 59.519 61.111 0.00 0.00 0.00 3.18
3013 9711 2.480555 GCATCGCCTGGTTTGACG 59.519 61.111 0.00 0.00 0.00 4.35
3014 9712 2.480555 CATCGCCTGGTTTGACGC 59.519 61.111 0.00 0.00 0.00 5.19
3015 9713 3.118454 ATCGCCTGGTTTGACGCG 61.118 61.111 3.53 3.53 45.76 6.01
3019 9717 4.025401 CCTGGTTTGACGCGCCAC 62.025 66.667 5.73 0.00 0.00 5.01
3047 9745 2.434185 CTCCAGCAACCGCGCTAA 60.434 61.111 5.56 0.00 45.49 3.09
3048 9746 2.031314 TCCAGCAACCGCGCTAAA 59.969 55.556 5.56 0.00 45.49 1.85
3049 9747 1.573829 CTCCAGCAACCGCGCTAAAA 61.574 55.000 5.56 0.00 45.49 1.52
3050 9748 0.958382 TCCAGCAACCGCGCTAAAAT 60.958 50.000 5.56 0.00 45.49 1.82
3051 9749 0.798009 CCAGCAACCGCGCTAAAATG 60.798 55.000 5.56 0.00 45.49 2.32
3052 9750 1.154035 AGCAACCGCGCTAAAATGC 60.154 52.632 5.56 9.06 45.49 3.56
3053 9751 1.443533 GCAACCGCGCTAAAATGCA 60.444 52.632 5.56 0.00 34.10 3.96
3054 9752 1.405469 GCAACCGCGCTAAAATGCAG 61.405 55.000 5.56 0.00 34.10 4.41
3055 9753 1.154035 AACCGCGCTAAAATGCAGC 60.154 52.632 5.56 0.00 35.61 5.25
3060 9758 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
3061 9759 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
3085 9783 3.659334 CTCCAGCAGAGCGCAAAA 58.341 55.556 11.47 0.00 46.13 2.44
3086 9784 1.951510 CTCCAGCAGAGCGCAAAAA 59.048 52.632 11.47 0.00 46.13 1.94
3087 9785 0.524862 CTCCAGCAGAGCGCAAAAAT 59.475 50.000 11.47 0.00 46.13 1.82
3088 9786 0.241749 TCCAGCAGAGCGCAAAAATG 59.758 50.000 11.47 2.18 46.13 2.32
3089 9787 1.349259 CCAGCAGAGCGCAAAAATGC 61.349 55.000 11.47 12.10 46.13 3.56
3090 9788 0.665068 CAGCAGAGCGCAAAAATGCA 60.665 50.000 11.47 0.00 46.13 3.96
3091 9789 0.032403 AGCAGAGCGCAAAAATGCAA 59.968 45.000 11.47 0.00 46.13 4.08
3092 9790 0.162294 GCAGAGCGCAAAAATGCAAC 59.838 50.000 11.47 0.00 41.79 4.17
3093 9791 0.431984 CAGAGCGCAAAAATGCAACG 59.568 50.000 11.47 0.00 34.41 4.10
3096 9794 2.201910 CGCAAAAATGCAACGCGC 60.202 55.556 5.73 0.00 39.43 6.86
3097 9795 2.201910 GCAAAAATGCAACGCGCG 60.202 55.556 30.96 30.96 46.97 6.86
3098 9796 2.201910 CAAAAATGCAACGCGCGC 60.202 55.556 32.58 23.91 46.97 6.86
3118 9816 3.722555 CGACTCGCACAAACAACATAT 57.277 42.857 0.00 0.00 0.00 1.78
3119 9817 3.407252 CGACTCGCACAAACAACATATG 58.593 45.455 0.00 0.00 0.00 1.78
3120 9818 3.163594 GACTCGCACAAACAACATATGC 58.836 45.455 1.58 0.00 0.00 3.14
3121 9819 2.551887 ACTCGCACAAACAACATATGCA 59.448 40.909 1.58 0.00 36.02 3.96
3122 9820 3.191162 ACTCGCACAAACAACATATGCAT 59.809 39.130 3.79 3.79 36.02 3.96
3123 9821 4.168014 CTCGCACAAACAACATATGCATT 58.832 39.130 3.54 0.00 36.02 3.56
3124 9822 4.165036 TCGCACAAACAACATATGCATTC 58.835 39.130 3.54 0.00 36.02 2.67
3125 9823 3.001856 CGCACAAACAACATATGCATTCG 60.002 43.478 3.54 0.00 36.02 3.34
3126 9824 4.165036 GCACAAACAACATATGCATTCGA 58.835 39.130 3.54 0.00 36.30 3.71
3127 9825 4.620609 GCACAAACAACATATGCATTCGAA 59.379 37.500 3.54 0.00 36.30 3.71
3128 9826 5.118357 GCACAAACAACATATGCATTCGAAA 59.882 36.000 3.54 0.00 36.30 3.46
3129 9827 6.346439 GCACAAACAACATATGCATTCGAAAA 60.346 34.615 3.54 0.00 36.30 2.29
3130 9828 7.621841 GCACAAACAACATATGCATTCGAAAAT 60.622 33.333 3.54 0.00 36.30 1.82
3131 9829 8.858186 CACAAACAACATATGCATTCGAAAATA 58.142 29.630 3.54 1.45 0.00 1.40
3132 9830 9.075519 ACAAACAACATATGCATTCGAAAATAG 57.924 29.630 3.54 0.00 0.00 1.73
3133 9831 9.288124 CAAACAACATATGCATTCGAAAATAGA 57.712 29.630 3.54 0.00 0.00 1.98
3134 9832 9.853555 AAACAACATATGCATTCGAAAATAGAA 57.146 25.926 3.54 0.00 0.00 2.10
3135 9833 9.507280 AACAACATATGCATTCGAAAATAGAAG 57.493 29.630 3.54 0.00 0.00 2.85
3136 9834 7.645340 ACAACATATGCATTCGAAAATAGAAGC 59.355 33.333 3.54 0.00 0.00 3.86
3137 9835 7.263100 ACATATGCATTCGAAAATAGAAGCA 57.737 32.000 3.54 4.80 36.75 3.91
3138 9836 7.706159 ACATATGCATTCGAAAATAGAAGCAA 58.294 30.769 3.54 0.00 36.32 3.91
3139 9837 8.190122 ACATATGCATTCGAAAATAGAAGCAAA 58.810 29.630 3.54 0.00 36.32 3.68
3140 9838 9.022915 CATATGCATTCGAAAATAGAAGCAAAA 57.977 29.630 3.54 0.00 36.32 2.44
3141 9839 7.887996 ATGCATTCGAAAATAGAAGCAAAAA 57.112 28.000 0.00 0.00 36.32 1.94
3142 9840 7.337150 TGCATTCGAAAATAGAAGCAAAAAG 57.663 32.000 0.00 0.00 32.86 2.27
3143 9841 7.144661 TGCATTCGAAAATAGAAGCAAAAAGA 58.855 30.769 0.00 0.00 32.86 2.52
3144 9842 7.814107 TGCATTCGAAAATAGAAGCAAAAAGAT 59.186 29.630 0.00 0.00 32.86 2.40
3145 9843 8.316753 GCATTCGAAAATAGAAGCAAAAAGATC 58.683 33.333 0.00 0.00 0.00 2.75
3146 9844 9.345517 CATTCGAAAATAGAAGCAAAAAGATCA 57.654 29.630 0.00 0.00 0.00 2.92
3147 9845 9.912634 ATTCGAAAATAGAAGCAAAAAGATCAA 57.087 25.926 0.00 0.00 0.00 2.57
3148 9846 9.743057 TTCGAAAATAGAAGCAAAAAGATCAAA 57.257 25.926 0.00 0.00 0.00 2.69
3149 9847 9.743057 TCGAAAATAGAAGCAAAAAGATCAAAA 57.257 25.926 0.00 0.00 0.00 2.44
3150 9848 9.783425 CGAAAATAGAAGCAAAAAGATCAAAAC 57.217 29.630 0.00 0.00 0.00 2.43
3155 9853 7.903995 AGAAGCAAAAAGATCAAAACAAACA 57.096 28.000 0.00 0.00 0.00 2.83
3156 9854 8.321650 AGAAGCAAAAAGATCAAAACAAACAA 57.678 26.923 0.00 0.00 0.00 2.83
3157 9855 8.782144 AGAAGCAAAAAGATCAAAACAAACAAA 58.218 25.926 0.00 0.00 0.00 2.83
3158 9856 9.392021 GAAGCAAAAAGATCAAAACAAACAAAA 57.608 25.926 0.00 0.00 0.00 2.44
3159 9857 9.741647 AAGCAAAAAGATCAAAACAAACAAAAA 57.258 22.222 0.00 0.00 0.00 1.94
3160 9858 9.911138 AGCAAAAAGATCAAAACAAACAAAAAT 57.089 22.222 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.503356 TGACATGTTTGGGCCAGTTTTT 59.497 40.909 6.23 0.00 0.00 1.94
18 19 2.114616 TGACATGTTTGGGCCAGTTTT 58.885 42.857 6.23 0.00 0.00 2.43
19 20 1.786937 TGACATGTTTGGGCCAGTTT 58.213 45.000 6.23 0.00 0.00 2.66
20 21 1.619827 CATGACATGTTTGGGCCAGTT 59.380 47.619 6.23 0.00 0.00 3.16
21 22 1.203038 TCATGACATGTTTGGGCCAGT 60.203 47.619 14.98 0.00 0.00 4.00
22 23 1.548081 TCATGACATGTTTGGGCCAG 58.452 50.000 14.98 0.00 0.00 4.85
23 24 2.006805 TTCATGACATGTTTGGGCCA 57.993 45.000 14.98 0.00 0.00 5.36
24 25 3.066380 GTTTTCATGACATGTTTGGGCC 58.934 45.455 14.98 0.00 0.00 5.80
25 26 3.726607 TGTTTTCATGACATGTTTGGGC 58.273 40.909 14.98 3.62 0.00 5.36
28 29 5.970140 TGCTTGTTTTCATGACATGTTTG 57.030 34.783 14.98 1.26 0.00 2.93
29 30 7.066043 ACAATTGCTTGTTTTCATGACATGTTT 59.934 29.630 14.98 0.00 43.05 2.83
30 31 6.539464 ACAATTGCTTGTTTTCATGACATGTT 59.461 30.769 14.98 0.00 43.05 2.71
31 32 6.018588 CACAATTGCTTGTTTTCATGACATGT 60.019 34.615 14.98 0.00 43.05 3.21
33 34 5.467399 CCACAATTGCTTGTTTTCATGACAT 59.533 36.000 5.05 0.00 43.05 3.06
36 4107 5.021033 ACCACAATTGCTTGTTTTCATGA 57.979 34.783 5.05 0.00 43.05 3.07
55 4126 3.499338 AGCATTCTGGAAATGTGAACCA 58.501 40.909 0.00 0.00 0.00 3.67
74 4145 5.831702 AGATTGGATTGTCTGATTGAAGC 57.168 39.130 0.00 0.00 0.00 3.86
129 4202 0.036388 TGCCCGTTCCTGAAGATGAC 60.036 55.000 0.00 0.00 0.00 3.06
186 4259 0.815615 GGCCGCTATGGAGTTCTTGG 60.816 60.000 0.00 0.00 42.00 3.61
187 4260 1.154205 CGGCCGCTATGGAGTTCTTG 61.154 60.000 14.67 0.00 42.00 3.02
193 4266 2.279517 GTGTCGGCCGCTATGGAG 60.280 66.667 23.51 0.00 42.00 3.86
218 4291 3.343617 GTTCACAAAATGGATCTCGGGA 58.656 45.455 0.00 0.00 0.00 5.14
304 4383 0.921896 CCCCACTCACCCTGATTCAT 59.078 55.000 0.00 0.00 0.00 2.57
323 4402 1.161563 TCAACAAACCTCGGGCGTTC 61.162 55.000 0.00 0.00 0.00 3.95
325 4404 0.953960 GATCAACAAACCTCGGGCGT 60.954 55.000 0.00 0.00 0.00 5.68
326 4405 1.644786 GGATCAACAAACCTCGGGCG 61.645 60.000 0.00 0.00 0.00 6.13
334 4419 3.425193 GCACACGAAATGGATCAACAAAC 59.575 43.478 0.00 0.00 0.00 2.93
338 4423 3.181510 GGTAGCACACGAAATGGATCAAC 60.182 47.826 0.00 0.00 0.00 3.18
339 4424 3.006940 GGTAGCACACGAAATGGATCAA 58.993 45.455 0.00 0.00 0.00 2.57
365 4450 3.917760 GCCGGCTCGCAGGACTAT 61.918 66.667 22.15 0.00 32.98 2.12
2260 8888 9.492973 AGAGTTTATGCAAGCATTTACATTTTT 57.507 25.926 13.32 0.00 37.82 1.94
2261 8889 9.143631 GAGAGTTTATGCAAGCATTTACATTTT 57.856 29.630 13.32 0.00 37.82 1.82
2262 8890 8.526147 AGAGAGTTTATGCAAGCATTTACATTT 58.474 29.630 13.32 2.46 37.82 2.32
2263 8891 8.059798 AGAGAGTTTATGCAAGCATTTACATT 57.940 30.769 13.32 4.55 37.82 2.71
2264 8892 7.636150 AGAGAGTTTATGCAAGCATTTACAT 57.364 32.000 13.32 5.12 37.82 2.29
2265 8893 7.174772 TCAAGAGAGTTTATGCAAGCATTTACA 59.825 33.333 13.32 0.00 37.82 2.41
2266 8894 7.530010 TCAAGAGAGTTTATGCAAGCATTTAC 58.470 34.615 13.32 11.13 37.82 2.01
2267 8895 7.686438 TCAAGAGAGTTTATGCAAGCATTTA 57.314 32.000 13.32 0.00 37.82 1.40
2268 8896 6.579666 TCAAGAGAGTTTATGCAAGCATTT 57.420 33.333 13.32 0.00 37.82 2.32
2269 8897 6.152323 ACATCAAGAGAGTTTATGCAAGCATT 59.848 34.615 13.32 0.00 37.82 3.56
2270 8898 5.651139 ACATCAAGAGAGTTTATGCAAGCAT 59.349 36.000 12.66 12.66 40.19 3.79
2271 8899 5.005740 ACATCAAGAGAGTTTATGCAAGCA 58.994 37.500 0.00 0.00 0.00 3.91
2272 8900 5.557891 ACATCAAGAGAGTTTATGCAAGC 57.442 39.130 0.00 0.00 0.00 4.01
2273 8901 8.671921 ACAATACATCAAGAGAGTTTATGCAAG 58.328 33.333 0.00 0.00 0.00 4.01
2274 8902 8.565896 ACAATACATCAAGAGAGTTTATGCAA 57.434 30.769 0.00 0.00 0.00 4.08
2275 8903 9.665719 TTACAATACATCAAGAGAGTTTATGCA 57.334 29.630 0.00 0.00 0.00 3.96
2296 8924 3.814625 TCATCCAAGCACACAGTTACAA 58.185 40.909 0.00 0.00 0.00 2.41
2298 8926 2.160417 GCTCATCCAAGCACACAGTTAC 59.840 50.000 0.00 0.00 42.05 2.50
2299 8927 2.426522 GCTCATCCAAGCACACAGTTA 58.573 47.619 0.00 0.00 42.05 2.24
2300 8928 1.242076 GCTCATCCAAGCACACAGTT 58.758 50.000 0.00 0.00 42.05 3.16
2301 8929 0.607489 GGCTCATCCAAGCACACAGT 60.607 55.000 0.00 0.00 44.35 3.55
2302 8930 0.607217 TGGCTCATCCAAGCACACAG 60.607 55.000 0.00 0.00 43.21 3.66
2303 8931 1.455412 TGGCTCATCCAAGCACACA 59.545 52.632 0.00 0.00 43.21 3.72
2304 8932 4.402851 TGGCTCATCCAAGCACAC 57.597 55.556 0.00 0.00 43.21 3.82
2511 9196 7.672983 TTTTGGAAAAACAGCACAAATTGTA 57.327 28.000 0.00 0.00 31.92 2.41
2623 9314 6.156602 TGCATATGGAAAAGATGGTGGAAAAT 59.843 34.615 4.56 0.00 0.00 1.82
2673 9371 5.132648 AGGAAGCACTACATTATGGAATGGA 59.867 40.000 0.00 0.00 45.83 3.41
2674 9372 5.380043 AGGAAGCACTACATTATGGAATGG 58.620 41.667 0.00 0.00 45.83 3.16
2675 9373 6.294473 AGAGGAAGCACTACATTATGGAATG 58.706 40.000 0.00 0.00 46.77 2.67
2676 9374 6.506538 AGAGGAAGCACTACATTATGGAAT 57.493 37.500 0.00 0.00 0.00 3.01
2677 9375 5.957771 AGAGGAAGCACTACATTATGGAA 57.042 39.130 0.00 0.00 0.00 3.53
2678 9376 6.211584 GGATAGAGGAAGCACTACATTATGGA 59.788 42.308 0.00 0.00 0.00 3.41
2679 9377 6.014242 TGGATAGAGGAAGCACTACATTATGG 60.014 42.308 0.00 0.00 0.00 2.74
2680 9378 6.870965 GTGGATAGAGGAAGCACTACATTATG 59.129 42.308 0.00 0.00 0.00 1.90
2681 9379 6.294787 CGTGGATAGAGGAAGCACTACATTAT 60.295 42.308 0.00 0.00 0.00 1.28
2682 9380 5.009710 CGTGGATAGAGGAAGCACTACATTA 59.990 44.000 0.00 0.00 0.00 1.90
2683 9381 4.202161 CGTGGATAGAGGAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
2684 9382 3.319405 CGTGGATAGAGGAAGCACTACAT 59.681 47.826 0.00 0.00 0.00 2.29
2685 9383 2.688446 CGTGGATAGAGGAAGCACTACA 59.312 50.000 0.00 0.00 0.00 2.74
2686 9384 2.688958 ACGTGGATAGAGGAAGCACTAC 59.311 50.000 0.00 0.00 0.00 2.73
2687 9385 2.688446 CACGTGGATAGAGGAAGCACTA 59.312 50.000 7.95 0.00 0.00 2.74
2688 9386 1.478510 CACGTGGATAGAGGAAGCACT 59.521 52.381 7.95 0.00 0.00 4.40
2689 9387 1.476891 TCACGTGGATAGAGGAAGCAC 59.523 52.381 17.00 0.00 0.00 4.40
2690 9388 1.847328 TCACGTGGATAGAGGAAGCA 58.153 50.000 17.00 0.00 0.00 3.91
2691 9389 3.181475 TGAATCACGTGGATAGAGGAAGC 60.181 47.826 17.00 0.00 34.28 3.86
2692 9390 4.655762 TGAATCACGTGGATAGAGGAAG 57.344 45.455 17.00 0.00 34.28 3.46
2693 9391 4.466370 AGTTGAATCACGTGGATAGAGGAA 59.534 41.667 17.00 0.00 34.28 3.36
2694 9392 4.023980 AGTTGAATCACGTGGATAGAGGA 58.976 43.478 17.00 0.00 34.28 3.71
2695 9393 4.392921 AGTTGAATCACGTGGATAGAGG 57.607 45.455 17.00 0.00 34.28 3.69
2696 9394 5.869344 TCAAAGTTGAATCACGTGGATAGAG 59.131 40.000 17.00 0.00 34.28 2.43
2697 9395 5.637810 GTCAAAGTTGAATCACGTGGATAGA 59.362 40.000 17.00 0.00 39.21 1.98
2698 9396 5.163854 GGTCAAAGTTGAATCACGTGGATAG 60.164 44.000 17.00 0.00 39.21 2.08
2699 9397 4.693566 GGTCAAAGTTGAATCACGTGGATA 59.306 41.667 17.00 0.00 39.21 2.59
2700 9398 3.502211 GGTCAAAGTTGAATCACGTGGAT 59.498 43.478 17.00 4.53 39.21 3.41
2701 9399 2.875933 GGTCAAAGTTGAATCACGTGGA 59.124 45.455 17.00 2.69 39.21 4.02
2702 9400 2.349438 CGGTCAAAGTTGAATCACGTGG 60.349 50.000 17.00 0.00 39.21 4.94
2703 9401 2.286833 ACGGTCAAAGTTGAATCACGTG 59.713 45.455 9.94 9.94 39.21 4.49
2704 9402 2.557317 ACGGTCAAAGTTGAATCACGT 58.443 42.857 0.00 2.58 39.21 4.49
2705 9403 4.718858 TTACGGTCAAAGTTGAATCACG 57.281 40.909 0.00 2.00 39.21 4.35
2706 9404 7.924103 AAATTTACGGTCAAAGTTGAATCAC 57.076 32.000 0.00 0.00 39.21 3.06
2707 9405 9.453325 GTTAAATTTACGGTCAAAGTTGAATCA 57.547 29.630 0.00 0.00 39.21 2.57
2708 9406 9.673454 AGTTAAATTTACGGTCAAAGTTGAATC 57.327 29.630 0.00 0.00 39.21 2.52
2710 9408 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
2711 9409 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
2712 9410 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
2713 9411 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
2714 9412 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
2715 9413 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
2716 9414 8.558700 GTCTTGGTAGTTAAATTTACGGTCAAA 58.441 33.333 0.00 0.00 0.00 2.69
2717 9415 7.173047 GGTCTTGGTAGTTAAATTTACGGTCAA 59.827 37.037 0.00 0.00 0.00 3.18
2718 9416 6.650390 GGTCTTGGTAGTTAAATTTACGGTCA 59.350 38.462 0.00 0.00 0.00 4.02
2719 9417 6.183360 CGGTCTTGGTAGTTAAATTTACGGTC 60.183 42.308 0.00 0.00 0.00 4.79
2720 9418 5.639082 CGGTCTTGGTAGTTAAATTTACGGT 59.361 40.000 0.00 0.00 0.00 4.83
2721 9419 5.868801 TCGGTCTTGGTAGTTAAATTTACGG 59.131 40.000 0.00 0.00 0.00 4.02
2722 9420 6.949578 TCGGTCTTGGTAGTTAAATTTACG 57.050 37.500 0.00 0.00 0.00 3.18
2723 9421 7.695201 GCAATCGGTCTTGGTAGTTAAATTTAC 59.305 37.037 0.00 0.00 0.00 2.01
2724 9422 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
2725 9423 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
2726 9424 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
2727 9425 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
2728 9426 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
2729 9427 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
2730 9428 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
2731 9429 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
2732 9430 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
2743 9441 2.794627 TTTTGCTTCCGCCGCAATCG 62.795 55.000 5.33 0.00 45.67 3.34
2744 9442 0.665972 TTTTTGCTTCCGCCGCAATC 60.666 50.000 5.33 0.00 45.67 2.67
2745 9443 0.037419 ATTTTTGCTTCCGCCGCAAT 60.037 45.000 5.33 0.00 45.67 3.56
2746 9444 0.249657 AATTTTTGCTTCCGCCGCAA 60.250 45.000 0.00 0.00 44.83 4.85
2747 9445 0.598562 TAATTTTTGCTTCCGCCGCA 59.401 45.000 0.00 0.00 35.22 5.69
2748 9446 1.921243 ATAATTTTTGCTTCCGCCGC 58.079 45.000 0.00 0.00 34.43 6.53
2749 9447 4.854399 TGATATAATTTTTGCTTCCGCCG 58.146 39.130 0.00 0.00 34.43 6.46
2750 9448 5.687285 CACTGATATAATTTTTGCTTCCGCC 59.313 40.000 0.00 0.00 34.43 6.13
2751 9449 6.494842 TCACTGATATAATTTTTGCTTCCGC 58.505 36.000 0.00 0.00 0.00 5.54
2752 9450 9.520204 AATTCACTGATATAATTTTTGCTTCCG 57.480 29.630 0.00 0.00 0.00 4.30
2810 9508 1.874872 CCAACTACGGCGGAAGAAAAA 59.125 47.619 13.24 0.00 0.00 1.94
2811 9509 1.202675 ACCAACTACGGCGGAAGAAAA 60.203 47.619 13.24 0.00 0.00 2.29
2812 9510 0.393820 ACCAACTACGGCGGAAGAAA 59.606 50.000 13.24 0.00 0.00 2.52
2813 9511 0.037975 GACCAACTACGGCGGAAGAA 60.038 55.000 13.24 0.00 0.00 2.52
2814 9512 0.896940 AGACCAACTACGGCGGAAGA 60.897 55.000 13.24 0.00 0.00 2.87
2815 9513 0.458025 GAGACCAACTACGGCGGAAG 60.458 60.000 13.24 11.09 0.00 3.46
2816 9514 1.588082 GAGACCAACTACGGCGGAA 59.412 57.895 13.24 0.00 0.00 4.30
2817 9515 2.693762 CGAGACCAACTACGGCGGA 61.694 63.158 13.24 0.00 0.00 5.54
2818 9516 2.202570 CGAGACCAACTACGGCGG 60.203 66.667 13.24 0.00 0.00 6.13
2819 9517 1.080974 AACGAGACCAACTACGGCG 60.081 57.895 4.80 4.80 0.00 6.46
2820 9518 1.012486 CCAACGAGACCAACTACGGC 61.012 60.000 0.00 0.00 0.00 5.68
2821 9519 0.316204 ACCAACGAGACCAACTACGG 59.684 55.000 0.00 0.00 0.00 4.02
2822 9520 2.144482 AACCAACGAGACCAACTACG 57.856 50.000 0.00 0.00 0.00 3.51
2823 9521 6.549912 AAATTAACCAACGAGACCAACTAC 57.450 37.500 0.00 0.00 0.00 2.73
2824 9522 7.334921 CCATAAATTAACCAACGAGACCAACTA 59.665 37.037 0.00 0.00 0.00 2.24
2825 9523 6.150474 CCATAAATTAACCAACGAGACCAACT 59.850 38.462 0.00 0.00 0.00 3.16
2826 9524 6.072342 ACCATAAATTAACCAACGAGACCAAC 60.072 38.462 0.00 0.00 0.00 3.77
2827 9525 6.005198 ACCATAAATTAACCAACGAGACCAA 58.995 36.000 0.00 0.00 0.00 3.67
2828 9526 5.562635 ACCATAAATTAACCAACGAGACCA 58.437 37.500 0.00 0.00 0.00 4.02
2829 9527 5.644636 TGACCATAAATTAACCAACGAGACC 59.355 40.000 0.00 0.00 0.00 3.85
2830 9528 6.730960 TGACCATAAATTAACCAACGAGAC 57.269 37.500 0.00 0.00 0.00 3.36
2831 9529 7.446013 ACTTTGACCATAAATTAACCAACGAGA 59.554 33.333 0.00 0.00 0.00 4.04
2832 9530 7.590279 ACTTTGACCATAAATTAACCAACGAG 58.410 34.615 0.00 0.00 0.00 4.18
2833 9531 7.513371 ACTTTGACCATAAATTAACCAACGA 57.487 32.000 0.00 0.00 0.00 3.85
2834 9532 7.115663 CCAACTTTGACCATAAATTAACCAACG 59.884 37.037 0.00 0.00 0.00 4.10
2835 9533 8.145122 TCCAACTTTGACCATAAATTAACCAAC 58.855 33.333 0.00 0.00 0.00 3.77
2836 9534 8.251383 TCCAACTTTGACCATAAATTAACCAA 57.749 30.769 0.00 0.00 0.00 3.67
2837 9535 7.841282 TCCAACTTTGACCATAAATTAACCA 57.159 32.000 0.00 0.00 0.00 3.67
2838 9536 8.749354 AGATCCAACTTTGACCATAAATTAACC 58.251 33.333 0.00 0.00 0.00 2.85
2839 9537 9.788960 GAGATCCAACTTTGACCATAAATTAAC 57.211 33.333 0.00 0.00 0.00 2.01
2840 9538 9.527157 TGAGATCCAACTTTGACCATAAATTAA 57.473 29.630 0.00 0.00 0.00 1.40
2841 9539 9.177608 CTGAGATCCAACTTTGACCATAAATTA 57.822 33.333 0.00 0.00 0.00 1.40
2842 9540 7.123247 CCTGAGATCCAACTTTGACCATAAATT 59.877 37.037 0.00 0.00 0.00 1.82
2843 9541 6.604795 CCTGAGATCCAACTTTGACCATAAAT 59.395 38.462 0.00 0.00 0.00 1.40
2844 9542 5.945784 CCTGAGATCCAACTTTGACCATAAA 59.054 40.000 0.00 0.00 0.00 1.40
2845 9543 5.250543 TCCTGAGATCCAACTTTGACCATAA 59.749 40.000 0.00 0.00 0.00 1.90
2846 9544 4.782691 TCCTGAGATCCAACTTTGACCATA 59.217 41.667 0.00 0.00 0.00 2.74
2847 9545 3.588842 TCCTGAGATCCAACTTTGACCAT 59.411 43.478 0.00 0.00 0.00 3.55
2848 9546 2.978978 TCCTGAGATCCAACTTTGACCA 59.021 45.455 0.00 0.00 0.00 4.02
2849 9547 3.703001 TCCTGAGATCCAACTTTGACC 57.297 47.619 0.00 0.00 0.00 4.02
2850 9548 3.438434 GCTTCCTGAGATCCAACTTTGAC 59.562 47.826 0.00 0.00 0.00 3.18
2851 9549 3.679389 GCTTCCTGAGATCCAACTTTGA 58.321 45.455 0.00 0.00 0.00 2.69
2852 9550 2.417933 CGCTTCCTGAGATCCAACTTTG 59.582 50.000 0.00 0.00 0.00 2.77
2853 9551 2.704572 CGCTTCCTGAGATCCAACTTT 58.295 47.619 0.00 0.00 0.00 2.66
2854 9552 1.677217 GCGCTTCCTGAGATCCAACTT 60.677 52.381 0.00 0.00 0.00 2.66
2855 9553 0.107945 GCGCTTCCTGAGATCCAACT 60.108 55.000 0.00 0.00 0.00 3.16
2856 9554 1.424493 CGCGCTTCCTGAGATCCAAC 61.424 60.000 5.56 0.00 0.00 3.77
2857 9555 1.153568 CGCGCTTCCTGAGATCCAA 60.154 57.895 5.56 0.00 0.00 3.53
2858 9556 2.496341 CGCGCTTCCTGAGATCCA 59.504 61.111 5.56 0.00 0.00 3.41
2859 9557 2.279784 CCGCGCTTCCTGAGATCC 60.280 66.667 5.56 0.00 0.00 3.36
2860 9558 2.279784 CCCGCGCTTCCTGAGATC 60.280 66.667 5.56 0.00 0.00 2.75
2861 9559 4.537433 GCCCGCGCTTCCTGAGAT 62.537 66.667 5.56 0.00 0.00 2.75
2872 9570 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
2873 9571 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
2874 9572 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
2875 9573 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
2876 9574 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
2877 9575 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
2878 9576 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
2879 9577 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
2880 9578 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
2881 9579 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2882 9580 8.207350 TCTACTCCCTCCATTCCAAAATATAG 57.793 38.462 0.00 0.00 0.00 1.31
2883 9581 8.757307 ATCTACTCCCTCCATTCCAAAATATA 57.243 34.615 0.00 0.00 0.00 0.86
2884 9582 7.654287 ATCTACTCCCTCCATTCCAAAATAT 57.346 36.000 0.00 0.00 0.00 1.28
2885 9583 7.237679 CCTATCTACTCCCTCCATTCCAAAATA 59.762 40.741 0.00 0.00 0.00 1.40
2886 9584 6.044871 CCTATCTACTCCCTCCATTCCAAAAT 59.955 42.308 0.00 0.00 0.00 1.82
2887 9585 5.369699 CCTATCTACTCCCTCCATTCCAAAA 59.630 44.000 0.00 0.00 0.00 2.44
2888 9586 4.907875 CCTATCTACTCCCTCCATTCCAAA 59.092 45.833 0.00 0.00 0.00 3.28
2889 9587 4.172041 TCCTATCTACTCCCTCCATTCCAA 59.828 45.833 0.00 0.00 0.00 3.53
2890 9588 3.732742 TCCTATCTACTCCCTCCATTCCA 59.267 47.826 0.00 0.00 0.00 3.53
2891 9589 4.405756 TCCTATCTACTCCCTCCATTCC 57.594 50.000 0.00 0.00 0.00 3.01
2892 9590 6.749036 TTTTCCTATCTACTCCCTCCATTC 57.251 41.667 0.00 0.00 0.00 2.67
2893 9591 6.851836 TGATTTTCCTATCTACTCCCTCCATT 59.148 38.462 0.00 0.00 0.00 3.16
2894 9592 6.393897 TGATTTTCCTATCTACTCCCTCCAT 58.606 40.000 0.00 0.00 0.00 3.41
2895 9593 5.788430 TGATTTTCCTATCTACTCCCTCCA 58.212 41.667 0.00 0.00 0.00 3.86
2896 9594 6.327887 ACTTGATTTTCCTATCTACTCCCTCC 59.672 42.308 0.00 0.00 0.00 4.30
2897 9595 7.368198 ACTTGATTTTCCTATCTACTCCCTC 57.632 40.000 0.00 0.00 0.00 4.30
2898 9596 7.290481 GGTACTTGATTTTCCTATCTACTCCCT 59.710 40.741 0.00 0.00 0.00 4.20
2899 9597 7.290481 AGGTACTTGATTTTCCTATCTACTCCC 59.710 40.741 0.00 0.00 27.25 4.30
2900 9598 8.145122 CAGGTACTTGATTTTCCTATCTACTCC 58.855 40.741 0.00 0.00 34.60 3.85
2901 9599 7.654116 GCAGGTACTTGATTTTCCTATCTACTC 59.346 40.741 9.51 0.00 34.60 2.59
2902 9600 7.345914 AGCAGGTACTTGATTTTCCTATCTACT 59.654 37.037 9.51 0.00 34.60 2.57
2903 9601 7.501844 AGCAGGTACTTGATTTTCCTATCTAC 58.498 38.462 9.51 0.00 34.60 2.59
2904 9602 7.565398 AGAGCAGGTACTTGATTTTCCTATCTA 59.435 37.037 9.51 0.00 34.60 1.98
2905 9603 6.385467 AGAGCAGGTACTTGATTTTCCTATCT 59.615 38.462 9.51 0.00 34.60 1.98
2906 9604 6.587273 AGAGCAGGTACTTGATTTTCCTATC 58.413 40.000 9.51 0.00 34.60 2.08
2907 9605 6.385467 AGAGAGCAGGTACTTGATTTTCCTAT 59.615 38.462 9.51 0.00 34.60 2.57
2908 9606 5.721960 AGAGAGCAGGTACTTGATTTTCCTA 59.278 40.000 9.51 0.00 34.60 2.94
2909 9607 4.534103 AGAGAGCAGGTACTTGATTTTCCT 59.466 41.667 9.51 0.00 34.60 3.36
2910 9608 4.837972 AGAGAGCAGGTACTTGATTTTCC 58.162 43.478 9.51 0.00 34.60 3.13
2911 9609 4.873259 GGAGAGAGCAGGTACTTGATTTTC 59.127 45.833 9.51 5.02 34.60 2.29
2912 9610 4.621747 CGGAGAGAGCAGGTACTTGATTTT 60.622 45.833 9.51 0.00 34.60 1.82
2913 9611 3.118956 CGGAGAGAGCAGGTACTTGATTT 60.119 47.826 9.51 0.00 34.60 2.17
2914 9612 2.428890 CGGAGAGAGCAGGTACTTGATT 59.571 50.000 9.51 0.00 34.60 2.57
2915 9613 2.028130 CGGAGAGAGCAGGTACTTGAT 58.972 52.381 9.51 1.23 34.60 2.57
2916 9614 1.271982 ACGGAGAGAGCAGGTACTTGA 60.272 52.381 9.51 0.00 34.60 3.02
2917 9615 1.178276 ACGGAGAGAGCAGGTACTTG 58.822 55.000 0.00 0.00 34.60 3.16
2918 9616 2.803030 TACGGAGAGAGCAGGTACTT 57.197 50.000 0.00 0.00 34.60 2.24
2919 9617 2.239150 TCTTACGGAGAGAGCAGGTACT 59.761 50.000 0.00 0.00 43.88 2.73
2920 9618 2.641305 TCTTACGGAGAGAGCAGGTAC 58.359 52.381 0.00 0.00 0.00 3.34
2922 9620 3.981051 TCTTACGGAGAGAGCAGGT 57.019 52.632 0.00 0.00 0.00 4.00
2930 9628 2.427453 GTTGGAGATGCTCTTACGGAGA 59.573 50.000 0.00 0.00 44.45 3.71
2931 9629 2.166459 TGTTGGAGATGCTCTTACGGAG 59.834 50.000 0.00 0.00 44.49 4.63
2932 9630 2.166459 CTGTTGGAGATGCTCTTACGGA 59.834 50.000 0.00 0.00 0.00 4.69
2933 9631 2.544685 CTGTTGGAGATGCTCTTACGG 58.455 52.381 0.00 0.00 0.00 4.02
2934 9632 2.544685 CCTGTTGGAGATGCTCTTACG 58.455 52.381 0.00 0.00 34.57 3.18
2935 9633 2.284190 GCCTGTTGGAGATGCTCTTAC 58.716 52.381 0.00 0.00 34.57 2.34
2936 9634 1.134699 CGCCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 34.95 2.10
2937 9635 0.392193 CGCCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 34.95 2.85
2938 9636 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
2939 9637 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
2940 9638 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
2941 9639 3.512516 GGCGCCTGTTGGAGATGC 61.513 66.667 22.15 0.00 34.95 3.91
2942 9640 3.197790 CGGCGCCTGTTGGAGATG 61.198 66.667 26.68 0.00 34.95 2.90
2943 9641 4.473520 CCGGCGCCTGTTGGAGAT 62.474 66.667 26.68 0.00 34.95 2.75
2948 9646 4.326766 CACAACCGGCGCCTGTTG 62.327 66.667 43.42 43.42 43.52 3.33
2975 9673 0.988439 CGCGCGGCATATTTGTTTTT 59.012 45.000 24.84 0.00 0.00 1.94
2976 9674 1.409982 GCGCGCGGCATATTTGTTTT 61.410 50.000 33.06 0.00 42.87 2.43
2977 9675 1.871789 GCGCGCGGCATATTTGTTT 60.872 52.632 33.06 0.00 42.87 2.83
2978 9676 2.277884 GCGCGCGGCATATTTGTT 60.278 55.556 33.06 0.00 42.87 2.83
2979 9677 4.589700 CGCGCGCGGCATATTTGT 62.590 61.111 43.28 0.00 43.84 2.83
2995 9693 2.480555 GTCAAACCAGGCGATGCG 59.519 61.111 0.00 0.00 0.00 4.73
2996 9694 2.480555 CGTCAAACCAGGCGATGC 59.519 61.111 0.00 0.00 0.00 3.91
2997 9695 2.480555 GCGTCAAACCAGGCGATG 59.519 61.111 0.00 0.00 0.00 3.84
3002 9700 4.025401 GTGGCGCGTCAAACCAGG 62.025 66.667 18.26 0.00 33.12 4.45
3003 9701 4.368808 CGTGGCGCGTCAAACCAG 62.369 66.667 18.26 0.31 33.12 4.00
3030 9728 1.573829 TTTTAGCGCGGTTGCTGGAG 61.574 55.000 19.09 0.00 46.70 3.86
3031 9729 0.958382 ATTTTAGCGCGGTTGCTGGA 60.958 50.000 19.09 0.00 46.70 3.86
3032 9730 0.798009 CATTTTAGCGCGGTTGCTGG 60.798 55.000 19.09 0.00 46.70 4.85
3033 9731 1.405469 GCATTTTAGCGCGGTTGCTG 61.405 55.000 19.09 10.63 46.70 4.41
3035 9733 1.405469 CTGCATTTTAGCGCGGTTGC 61.405 55.000 22.01 22.01 37.31 4.17
3036 9734 1.405469 GCTGCATTTTAGCGCGGTTG 61.405 55.000 19.09 10.09 36.85 3.77
3037 9735 1.154035 GCTGCATTTTAGCGCGGTT 60.154 52.632 19.09 0.00 36.85 4.44
3038 9736 2.485122 GCTGCATTTTAGCGCGGT 59.515 55.556 17.70 17.70 36.85 5.68
3043 9741 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
3044 9742 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
3068 9766 0.524862 ATTTTTGCGCTCTGCTGGAG 59.475 50.000 9.73 3.48 46.63 3.86
3069 9767 0.241749 CATTTTTGCGCTCTGCTGGA 59.758 50.000 9.73 0.00 46.63 3.86
3070 9768 1.349259 GCATTTTTGCGCTCTGCTGG 61.349 55.000 9.73 0.00 46.63 4.85
3071 9769 0.665068 TGCATTTTTGCGCTCTGCTG 60.665 50.000 9.73 2.02 46.63 4.41
3072 9770 0.032403 TTGCATTTTTGCGCTCTGCT 59.968 45.000 9.73 0.00 46.63 4.24
3073 9771 0.162294 GTTGCATTTTTGCGCTCTGC 59.838 50.000 9.73 10.82 46.70 4.26
3074 9772 0.431984 CGTTGCATTTTTGCGCTCTG 59.568 50.000 9.73 0.00 37.69 3.35
3075 9773 1.277495 GCGTTGCATTTTTGCGCTCT 61.277 50.000 9.73 0.00 44.00 4.09
3076 9774 1.128412 GCGTTGCATTTTTGCGCTC 59.872 52.632 9.73 0.00 44.00 5.03
3077 9775 2.647381 CGCGTTGCATTTTTGCGCT 61.647 52.632 9.73 0.00 45.01 5.92
3078 9776 2.201910 CGCGTTGCATTTTTGCGC 60.202 55.556 0.00 0.00 42.42 6.09
3080 9778 2.201910 CGCGCGTTGCATTTTTGC 60.202 55.556 24.19 0.00 46.97 3.68
3081 9779 2.201910 GCGCGCGTTGCATTTTTG 60.202 55.556 32.35 0.00 46.97 2.44
3082 9780 3.751453 CGCGCGCGTTGCATTTTT 61.751 55.556 42.49 0.00 46.97 1.94
3083 9781 4.674904 TCGCGCGCGTTGCATTTT 62.675 55.556 46.54 0.00 46.97 1.82
3098 9796 3.407252 CATATGTTGTTTGTGCGAGTCG 58.593 45.455 8.54 8.54 0.00 4.18
3099 9797 3.163594 GCATATGTTGTTTGTGCGAGTC 58.836 45.455 4.29 0.00 0.00 3.36
3100 9798 2.551887 TGCATATGTTGTTTGTGCGAGT 59.448 40.909 4.29 0.00 38.58 4.18
3101 9799 3.200294 TGCATATGTTGTTTGTGCGAG 57.800 42.857 4.29 0.00 38.58 5.03
3102 9800 3.846423 ATGCATATGTTGTTTGTGCGA 57.154 38.095 0.00 0.00 38.58 5.10
3103 9801 3.001856 CGAATGCATATGTTGTTTGTGCG 60.002 43.478 0.00 0.00 38.58 5.34
3104 9802 4.165036 TCGAATGCATATGTTGTTTGTGC 58.835 39.130 0.00 0.00 36.39 4.57
3105 9803 6.687653 TTTCGAATGCATATGTTGTTTGTG 57.312 33.333 0.00 0.00 0.00 3.33
3106 9804 7.887996 ATTTTCGAATGCATATGTTGTTTGT 57.112 28.000 0.00 0.00 0.00 2.83
3107 9805 9.288124 TCTATTTTCGAATGCATATGTTGTTTG 57.712 29.630 0.00 1.88 0.00 2.93
3108 9806 9.853555 TTCTATTTTCGAATGCATATGTTGTTT 57.146 25.926 0.00 0.00 0.00 2.83
3109 9807 9.507280 CTTCTATTTTCGAATGCATATGTTGTT 57.493 29.630 0.00 0.00 0.00 2.83
3110 9808 7.645340 GCTTCTATTTTCGAATGCATATGTTGT 59.355 33.333 0.00 0.00 0.00 3.32
3111 9809 7.644945 TGCTTCTATTTTCGAATGCATATGTTG 59.355 33.333 0.00 0.00 0.00 3.33
3112 9810 7.706159 TGCTTCTATTTTCGAATGCATATGTT 58.294 30.769 0.00 0.00 0.00 2.71
3113 9811 7.263100 TGCTTCTATTTTCGAATGCATATGT 57.737 32.000 0.00 0.00 0.00 2.29
3114 9812 8.564648 TTTGCTTCTATTTTCGAATGCATATG 57.435 30.769 0.00 0.00 30.54 1.78
3115 9813 9.585099 TTTTTGCTTCTATTTTCGAATGCATAT 57.415 25.926 0.00 0.00 30.54 1.78
3116 9814 8.978564 TTTTTGCTTCTATTTTCGAATGCATA 57.021 26.923 0.00 0.00 30.54 3.14
3117 9815 7.814107 TCTTTTTGCTTCTATTTTCGAATGCAT 59.186 29.630 0.00 0.00 30.54 3.96
3118 9816 7.144661 TCTTTTTGCTTCTATTTTCGAATGCA 58.855 30.769 0.00 0.00 0.00 3.96
3119 9817 7.566858 TCTTTTTGCTTCTATTTTCGAATGC 57.433 32.000 0.00 0.00 0.00 3.56
3120 9818 9.345517 TGATCTTTTTGCTTCTATTTTCGAATG 57.654 29.630 0.00 0.00 0.00 2.67
3121 9819 9.912634 TTGATCTTTTTGCTTCTATTTTCGAAT 57.087 25.926 0.00 0.00 0.00 3.34
3122 9820 9.743057 TTTGATCTTTTTGCTTCTATTTTCGAA 57.257 25.926 0.00 0.00 0.00 3.71
3123 9821 9.743057 TTTTGATCTTTTTGCTTCTATTTTCGA 57.257 25.926 0.00 0.00 0.00 3.71
3124 9822 9.783425 GTTTTGATCTTTTTGCTTCTATTTTCG 57.217 29.630 0.00 0.00 0.00 3.46
3129 9827 9.598517 TGTTTGTTTTGATCTTTTTGCTTCTAT 57.401 25.926 0.00 0.00 0.00 1.98
3130 9828 8.994429 TGTTTGTTTTGATCTTTTTGCTTCTA 57.006 26.923 0.00 0.00 0.00 2.10
3131 9829 7.903995 TGTTTGTTTTGATCTTTTTGCTTCT 57.096 28.000 0.00 0.00 0.00 2.85
3132 9830 8.947304 TTTGTTTGTTTTGATCTTTTTGCTTC 57.053 26.923 0.00 0.00 0.00 3.86
3133 9831 9.741647 TTTTTGTTTGTTTTGATCTTTTTGCTT 57.258 22.222 0.00 0.00 0.00 3.91
3134 9832 9.911138 ATTTTTGTTTGTTTTGATCTTTTTGCT 57.089 22.222 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.