Multiple sequence alignment - TraesCS4A01G046200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G046200 chr4A 100.000 4045 0 0 383 4427 37828724 37824680 0.000000e+00 7470.0
1 TraesCS4A01G046200 chr4A 100.000 136 0 0 1 136 37829106 37828971 7.350000e-63 252.0
2 TraesCS4A01G046200 chr4D 95.787 1614 51 5 2037 3640 428568540 428570146 0.000000e+00 2588.0
3 TraesCS4A01G046200 chr4D 89.315 1460 85 33 404 1828 428563840 428565263 0.000000e+00 1766.0
4 TraesCS4A01G046200 chr4D 89.406 387 22 10 3638 4015 428570192 428570568 1.860000e-128 470.0
5 TraesCS4A01G046200 chr4D 95.359 237 3 4 1834 2062 428565381 428565617 1.940000e-98 370.0
6 TraesCS4A01G046200 chr4D 91.111 135 5 2 1 131 428563620 428563751 4.550000e-40 176.0
7 TraesCS4A01G046200 chr4B 89.892 1939 111 30 404 2289 526956509 526954603 0.000000e+00 2416.0
8 TraesCS4A01G046200 chr4B 95.659 1359 53 5 2287 3640 526954525 526953168 0.000000e+00 2178.0
9 TraesCS4A01G046200 chr4B 86.925 413 45 5 4017 4427 526952344 526951939 5.220000e-124 455.0
10 TraesCS4A01G046200 chr4B 89.352 216 16 3 3799 4013 526952587 526952378 9.440000e-67 265.0
11 TraesCS4A01G046200 chr4B 90.062 161 8 2 3638 3790 526953123 526952963 7.510000e-48 202.0
12 TraesCS4A01G046200 chr6A 78.417 139 22 6 4109 4239 206348971 206348833 2.840000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G046200 chr4A 37824680 37829106 4426 True 3861.0 7470 100.0000 1 4427 2 chr4A.!!$R1 4426
1 TraesCS4A01G046200 chr4D 428563620 428570568 6948 False 1074.0 2588 92.1956 1 4015 5 chr4D.!!$F1 4014
2 TraesCS4A01G046200 chr4B 526951939 526956509 4570 True 1103.2 2416 90.3780 404 4427 5 chr4B.!!$R1 4023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
788 830 0.100503 GCTTCGCTCTCTCCAGTCTC 59.899 60.0 0.00 0.00 0.00 3.36 F
984 1041 0.109723 TGGTGGGGAAAGAAGAACCG 59.890 55.0 0.00 0.00 0.00 4.44 F
986 1043 0.109913 GTGGGGAAAGAAGAACCGGT 59.890 55.0 0.00 0.00 0.00 5.28 F
2742 5986 0.178301 GTAGTGGGGAGCTGCCTTAC 59.822 60.0 24.77 21.55 36.66 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2692 5936 0.830444 TAGTGTCGACCACCTTGCCT 60.830 55.0 14.12 0.0 45.74 4.75 R
2889 6135 0.178964 CCTGCCCAACCTTTTCCTGA 60.179 55.0 0.00 0.0 0.00 3.86 R
2908 6154 2.175878 ACATCACTCTGTTGGTGAGC 57.824 50.0 0.00 0.0 45.14 4.26 R
4404 8105 0.246635 CGATGAACTTCCCTCGGTGT 59.753 55.0 3.91 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.753262 GACCGACCACAGCCATATCT 59.247 55.000 0.00 0.00 0.00 1.98
65 66 1.961394 GACCGACCACAGCCATATCTA 59.039 52.381 0.00 0.00 0.00 1.98
86 91 0.107459 CCAGCTAGGAAAGACAGGCC 60.107 60.000 0.00 0.00 41.22 5.19
96 101 2.409948 AAGACAGGCCTATCAAGCAC 57.590 50.000 14.85 0.00 0.00 4.40
131 136 6.430000 CCATCATAGATGATTGAGCAACATGA 59.570 38.462 8.49 0.00 44.70 3.07
132 137 7.040686 CCATCATAGATGATTGAGCAACATGAA 60.041 37.037 8.49 0.00 44.70 2.57
412 417 1.246056 ATGCGTGAAGGTGCAGCAAT 61.246 50.000 19.63 6.27 45.52 3.56
439 444 2.437850 CGCCAAGCAGCAAAATCAC 58.562 52.632 0.00 0.00 0.00 3.06
440 445 1.339235 CGCCAAGCAGCAAAATCACG 61.339 55.000 0.00 0.00 0.00 4.35
442 447 1.068610 GCCAAGCAGCAAAATCACGTA 60.069 47.619 0.00 0.00 0.00 3.57
459 464 1.615883 CGTATCTCCTCCTCACCCATG 59.384 57.143 0.00 0.00 0.00 3.66
460 465 2.683768 GTATCTCCTCCTCACCCATGT 58.316 52.381 0.00 0.00 0.00 3.21
465 471 2.286121 TCCTCACCCATGTCCCCC 60.286 66.667 0.00 0.00 0.00 5.40
489 501 2.018086 CCTCCCTCTCCCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
490 502 1.541672 CTCCCTCTCCCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
491 503 2.015726 TCCCTCTCCCCCTCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
493 505 2.387772 CCTCTCCCCCTCTCTCCGA 61.388 68.421 0.00 0.00 0.00 4.55
494 506 1.152839 CTCTCCCCCTCTCTCCGAC 60.153 68.421 0.00 0.00 0.00 4.79
495 507 1.619975 TCTCCCCCTCTCTCCGACT 60.620 63.158 0.00 0.00 0.00 4.18
496 508 1.215679 TCTCCCCCTCTCTCCGACTT 61.216 60.000 0.00 0.00 0.00 3.01
497 509 0.753848 CTCCCCCTCTCTCCGACTTC 60.754 65.000 0.00 0.00 0.00 3.01
786 828 1.226547 CGCTTCGCTCTCTCCAGTC 60.227 63.158 0.00 0.00 0.00 3.51
788 830 0.100503 GCTTCGCTCTCTCCAGTCTC 59.899 60.000 0.00 0.00 0.00 3.36
793 835 1.427419 CTCTCTCCAGTCTCGTGCG 59.573 63.158 0.00 0.00 0.00 5.34
822 864 2.095263 GCCAAGCACGAATCTTAAAGCA 60.095 45.455 0.00 0.00 0.00 3.91
871 913 1.136984 CTCGTACGGTCTGGTCTGC 59.863 63.158 16.52 0.00 0.00 4.26
872 914 2.181021 CGTACGGTCTGGTCTGCC 59.819 66.667 7.57 0.00 0.00 4.85
975 1032 0.536460 GAAGCGAAGTGGTGGGGAAA 60.536 55.000 0.00 0.00 0.00 3.13
976 1033 0.537371 AAGCGAAGTGGTGGGGAAAG 60.537 55.000 0.00 0.00 0.00 2.62
977 1034 1.072505 GCGAAGTGGTGGGGAAAGA 59.927 57.895 0.00 0.00 0.00 2.52
978 1035 0.536460 GCGAAGTGGTGGGGAAAGAA 60.536 55.000 0.00 0.00 0.00 2.52
979 1036 1.523758 CGAAGTGGTGGGGAAAGAAG 58.476 55.000 0.00 0.00 0.00 2.85
980 1037 1.071699 CGAAGTGGTGGGGAAAGAAGA 59.928 52.381 0.00 0.00 0.00 2.87
981 1038 2.486548 CGAAGTGGTGGGGAAAGAAGAA 60.487 50.000 0.00 0.00 0.00 2.52
982 1039 2.658807 AGTGGTGGGGAAAGAAGAAC 57.341 50.000 0.00 0.00 0.00 3.01
983 1040 1.145119 AGTGGTGGGGAAAGAAGAACC 59.855 52.381 0.00 0.00 0.00 3.62
984 1041 0.109723 TGGTGGGGAAAGAAGAACCG 59.890 55.000 0.00 0.00 0.00 4.44
985 1042 0.608308 GGTGGGGAAAGAAGAACCGG 60.608 60.000 0.00 0.00 0.00 5.28
986 1043 0.109913 GTGGGGAAAGAAGAACCGGT 59.890 55.000 0.00 0.00 0.00 5.28
987 1044 1.348696 GTGGGGAAAGAAGAACCGGTA 59.651 52.381 8.00 0.00 0.00 4.02
988 1045 1.626825 TGGGGAAAGAAGAACCGGTAG 59.373 52.381 8.00 0.00 0.00 3.18
1136 1208 2.038837 GGTAAGCGCCCAGACCAAC 61.039 63.158 2.29 0.00 31.89 3.77
1176 1248 2.593725 CCCCGATCCGTCTCGCTA 60.594 66.667 0.00 0.00 37.33 4.26
1193 1265 7.221067 CGTCTCGCTAGAATTTTTCAGATTAGT 59.779 37.037 0.00 0.00 32.16 2.24
1211 1283 1.202770 AGTAACCAGTTCCTTGCGCTT 60.203 47.619 9.73 0.00 0.00 4.68
1319 1392 2.122167 GGAGGCGGAGAGACGACAT 61.122 63.158 0.00 0.00 46.48 3.06
1411 1484 2.936032 AGGGGAGGAACAGGCACC 60.936 66.667 0.00 0.00 0.00 5.01
1421 1494 2.281070 CAGGCACCTGCAAGACGT 60.281 61.111 3.23 0.00 44.36 4.34
1422 1495 1.893808 CAGGCACCTGCAAGACGTT 60.894 57.895 3.23 0.00 44.36 3.99
1427 1500 0.517316 CACCTGCAAGACGTTAAGGC 59.483 55.000 0.00 0.00 34.07 4.35
1452 1525 2.427753 GATGGTCCTGATCCGGGC 59.572 66.667 0.00 0.56 0.00 6.13
1557 1630 3.997400 CTCCGAGACGAGGGAGGCA 62.997 68.421 0.00 0.00 44.94 4.75
1599 1672 6.647067 CGTTCTTTCAGGTTCTTGTCTTCTAT 59.353 38.462 0.00 0.00 0.00 1.98
1604 1679 5.950883 TCAGGTTCTTGTCTTCTATACACG 58.049 41.667 0.00 0.00 0.00 4.49
1622 1697 1.608590 ACGTGTGCAGAAAAGGGATTG 59.391 47.619 0.00 0.00 0.00 2.67
1643 1718 4.787551 TGTTGTCAGTGGGTTATGTTCTT 58.212 39.130 0.00 0.00 0.00 2.52
1648 1723 4.072131 TCAGTGGGTTATGTTCTTTGCTC 58.928 43.478 0.00 0.00 0.00 4.26
1656 1731 3.498774 ATGTTCTTTGCTCTCAGTGGT 57.501 42.857 0.00 0.00 0.00 4.16
1742 1826 4.261155 GCAGTAACTGTCAATTCTTGTGCA 60.261 41.667 0.00 0.00 33.43 4.57
1831 1919 8.879427 AGGCTAATTGTCTTAAATTACACCTT 57.121 30.769 0.00 0.00 33.58 3.50
1832 1920 8.739972 AGGCTAATTGTCTTAAATTACACCTTG 58.260 33.333 0.00 0.00 33.58 3.61
1909 2109 8.237811 TCAGCTATTTCAGTATGTAGTGATGA 57.762 34.615 0.00 0.00 35.72 2.92
1910 2110 8.864087 TCAGCTATTTCAGTATGTAGTGATGAT 58.136 33.333 0.00 0.78 35.72 2.45
1911 2111 9.486497 CAGCTATTTCAGTATGTAGTGATGATT 57.514 33.333 0.00 0.00 35.72 2.57
2128 5285 7.138736 TGTGTTAGTATTTTGCAAGAGAAAGC 58.861 34.615 0.00 0.00 0.00 3.51
2254 5414 9.968870 GGAGTACTATTCTACTCATTTTAGTGG 57.031 37.037 0.00 0.00 43.15 4.00
2312 5552 9.409312 GTAGTTTACAAAGAAGTTCTAGAGTCC 57.591 37.037 5.65 0.00 0.00 3.85
2314 5554 8.652290 AGTTTACAAAGAAGTTCTAGAGTCCAT 58.348 33.333 5.65 0.00 0.00 3.41
2334 5575 5.305902 TCCATATGCTCTCCCATAACGTTTA 59.694 40.000 5.91 0.00 31.96 2.01
2335 5576 6.013725 TCCATATGCTCTCCCATAACGTTTAT 60.014 38.462 5.91 0.00 31.96 1.40
2550 5791 7.554476 GGGTTGTTGCTAAAGAATATCTCTCTT 59.446 37.037 0.00 0.00 34.56 2.85
2562 5806 6.838090 AGAATATCTCTCTTGTCAGGTCATCA 59.162 38.462 0.00 0.00 0.00 3.07
2692 5936 0.242555 TGATGAGCGTGAACGTGCTA 59.757 50.000 4.59 0.00 42.60 3.49
2708 5952 1.972198 CTAGGCAAGGTGGTCGACA 59.028 57.895 18.91 0.27 0.00 4.35
2741 5985 0.981277 GGTAGTGGGGAGCTGCCTTA 60.981 60.000 24.77 10.92 36.10 2.69
2742 5986 0.178301 GTAGTGGGGAGCTGCCTTAC 59.822 60.000 24.77 21.55 36.66 2.34
2775 6020 9.998106 TTACTTTCTGCACTACTTTATCTTTCT 57.002 29.630 0.00 0.00 0.00 2.52
2780 6025 7.727181 TCTGCACTACTTTATCTTTCTATCCC 58.273 38.462 0.00 0.00 0.00 3.85
2851 6097 4.515028 AGGGATCAAAATGAGCATCTCA 57.485 40.909 0.00 0.00 44.99 3.27
2889 6135 3.117512 ACAAGTCTGAGGGACATGGTTTT 60.118 43.478 0.00 0.00 44.86 2.43
2899 6145 3.006859 GGGACATGGTTTTCAGGAAAAGG 59.993 47.826 7.41 1.87 40.53 3.11
2908 6154 0.178964 TCAGGAAAAGGTTGGGCAGG 60.179 55.000 0.00 0.00 0.00 4.85
2913 6159 1.115326 AAAAGGTTGGGCAGGCTCAC 61.115 55.000 0.00 0.00 0.00 3.51
2919 6165 2.674380 GGGCAGGCTCACCAACAG 60.674 66.667 5.51 0.00 39.06 3.16
3000 6246 2.681421 GCCAAAAGGAGGCCAGGG 60.681 66.667 5.01 0.00 46.50 4.45
3044 6290 0.254178 GAGGGGCAAGAATCAGCTCA 59.746 55.000 0.36 0.00 31.24 4.26
3122 6368 4.114597 TCTGGAATGGGAGAAGAAAGGAT 58.885 43.478 0.00 0.00 0.00 3.24
3179 6425 2.355309 TCGAGATACCAGGAGGGGATA 58.645 52.381 0.00 0.00 41.83 2.59
3197 6443 4.283722 GGGATATTCTGATTACCGGAGTGT 59.716 45.833 9.46 0.00 0.00 3.55
3307 6553 4.284123 GCAACATGCACGAGGAGA 57.716 55.556 0.00 0.00 44.26 3.71
3432 6678 0.393448 TGTTGGCGCTGTAGTTACCA 59.607 50.000 7.64 0.00 0.00 3.25
3531 6777 0.331278 TTTGGGATGGCTCGATGGTT 59.669 50.000 0.00 0.00 0.00 3.67
3545 6791 5.221185 GCTCGATGGTTATGTACTTGGTCTA 60.221 44.000 0.00 0.00 0.00 2.59
3546 6792 6.387041 TCGATGGTTATGTACTTGGTCTAG 57.613 41.667 0.00 0.00 0.00 2.43
3653 6948 4.217118 CCCCTTTGAACTCATGAACTCTTG 59.783 45.833 0.00 0.00 0.00 3.02
3720 7015 9.120538 AGTGTTTGTAACAAACATTATCAGTCT 57.879 29.630 13.57 1.40 44.16 3.24
3726 7021 7.713073 TGTAACAAACATTATCAGTCTGTGTCA 59.287 33.333 0.00 0.00 31.43 3.58
3790 7092 7.819644 TGAATTTGTGTCTGTCCATTATCTTG 58.180 34.615 0.00 0.00 0.00 3.02
3860 7529 8.637196 TGATCACCTAATATACTCTACCACTG 57.363 38.462 0.00 0.00 0.00 3.66
3952 7622 8.255905 TGACTAGAAGGCAAAATTACCTAGTAC 58.744 37.037 0.00 0.00 36.48 2.73
3958 7628 6.407202 AGGCAAAATTACCTAGTACACTCTG 58.593 40.000 0.00 0.00 33.38 3.35
4002 7672 8.630054 ATGATCACCTAGTATACTCAGTTCTC 57.370 38.462 9.12 7.51 0.00 2.87
4013 7683 2.509964 ACTCAGTTCTCTTTTGGGGTGT 59.490 45.455 0.00 0.00 0.00 4.16
4015 7685 1.338020 CAGTTCTCTTTTGGGGTGTGC 59.662 52.381 0.00 0.00 0.00 4.57
4033 7733 1.600636 CCCTTGCGCCTCAAACTGA 60.601 57.895 4.18 0.00 33.65 3.41
4034 7734 1.580845 CCCTTGCGCCTCAAACTGAG 61.581 60.000 4.18 0.00 43.91 3.35
4056 7756 3.686016 AGGGCAACACACCAAGTTATAG 58.314 45.455 0.00 0.00 39.74 1.31
4057 7757 2.163613 GGGCAACACACCAAGTTATAGC 59.836 50.000 0.00 0.00 39.74 2.97
4058 7758 2.159572 GGCAACACACCAAGTTATAGCG 60.160 50.000 0.00 0.00 0.00 4.26
4063 7763 2.482336 CACACCAAGTTATAGCGCAACA 59.518 45.455 11.47 0.00 0.00 3.33
4072 7772 6.589830 AGTTATAGCGCAACATTCTAACAG 57.410 37.500 11.47 0.00 0.00 3.16
4088 7788 3.824414 AACAGCACCAAGTTATAACGC 57.176 42.857 9.91 7.08 0.00 4.84
4091 7791 3.058501 ACAGCACCAAGTTATAACGCAAC 60.059 43.478 9.91 0.07 0.00 4.17
4097 7797 3.181524 CCAAGTTATAACGCAACACTCCG 60.182 47.826 9.91 0.00 0.00 4.63
4098 7798 2.613691 AGTTATAACGCAACACTCCGG 58.386 47.619 9.91 0.00 0.00 5.14
4105 7805 2.949106 CAACACTCCGGCAGCTTG 59.051 61.111 0.00 0.00 0.00 4.01
4110 7810 2.187946 CTCCGGCAGCTTGGTAGG 59.812 66.667 0.00 0.00 0.00 3.18
4111 7811 3.391665 CTCCGGCAGCTTGGTAGGG 62.392 68.421 0.00 0.00 0.00 3.53
4123 7823 4.228210 AGCTTGGTAGGGAATGAGAATTCA 59.772 41.667 8.44 0.00 37.81 2.57
4131 7831 7.445707 GGTAGGGAATGAGAATTCAAAGGATAC 59.554 40.741 8.44 1.51 36.78 2.24
4132 7832 6.973642 AGGGAATGAGAATTCAAAGGATACA 58.026 36.000 8.44 0.00 36.78 2.29
4144 7844 9.699410 AATTCAAAGGATACAAGACATAATCCA 57.301 29.630 3.26 0.00 40.37 3.41
4145 7845 9.872684 ATTCAAAGGATACAAGACATAATCCAT 57.127 29.630 3.26 0.00 40.37 3.41
4146 7846 9.699410 TTCAAAGGATACAAGACATAATCCATT 57.301 29.630 3.26 0.00 40.37 3.16
4147 7847 9.123902 TCAAAGGATACAAGACATAATCCATTG 57.876 33.333 10.41 10.41 43.53 2.82
4150 7850 9.479549 AAGGATACAAGACATAATCCATTGTTT 57.520 29.630 3.26 0.00 40.37 2.83
4154 7854 7.301868 ACAAGACATAATCCATTGTTTGGTT 57.698 32.000 0.00 0.00 46.52 3.67
4157 7857 5.187576 AGACATAATCCATTGTTTGGTTGGG 59.812 40.000 0.00 0.00 46.52 4.12
4162 7862 1.542987 CCATTGTTTGGTTGGGGCAAG 60.543 52.381 0.00 0.00 40.99 4.01
4168 7868 0.104725 TTGGTTGGGGCAAGGGAATT 60.105 50.000 0.00 0.00 0.00 2.17
4169 7869 0.835543 TGGTTGGGGCAAGGGAATTG 60.836 55.000 0.00 0.00 42.20 2.32
4170 7870 0.835971 GGTTGGGGCAAGGGAATTGT 60.836 55.000 0.00 0.00 41.29 2.71
4185 7886 3.195610 GGAATTGTGGAAGGATGGGAAAC 59.804 47.826 0.00 0.00 0.00 2.78
4209 7910 8.924511 ACTGAATTAAGAAGGTCAAATCTCAA 57.075 30.769 0.00 0.00 0.00 3.02
4222 7923 5.233263 GTCAAATCTCAAGTATCTCTTCCGC 59.767 44.000 0.00 0.00 33.63 5.54
4230 7931 2.361865 TATCTCTTCCGCGCCCCCTA 62.362 60.000 0.00 0.00 0.00 3.53
4242 7943 2.039348 GCGCCCCCTATTAATTCACCTA 59.961 50.000 0.00 0.00 0.00 3.08
4246 7947 4.248652 CCCCCTATTAATTCACCTAGGGT 58.751 47.826 14.81 0.00 46.13 4.34
4259 7960 4.081695 ACCTAGGGTGAGATTTCCTCTT 57.918 45.455 14.81 0.00 42.44 2.85
4260 7961 3.777522 ACCTAGGGTGAGATTTCCTCTTG 59.222 47.826 14.81 0.00 42.44 3.02
4287 7988 2.574322 CACTGCTAATTCGCAACACAC 58.426 47.619 6.10 0.00 39.80 3.82
4291 7992 2.286713 TGCTAATTCGCAACACACACAC 60.287 45.455 1.54 0.00 36.89 3.82
4292 7993 2.032030 GCTAATTCGCAACACACACACT 60.032 45.455 0.00 0.00 0.00 3.55
4293 7994 3.185594 GCTAATTCGCAACACACACACTA 59.814 43.478 0.00 0.00 0.00 2.74
4294 7995 4.319190 GCTAATTCGCAACACACACACTAA 60.319 41.667 0.00 0.00 0.00 2.24
4296 7997 4.624336 ATTCGCAACACACACACTAAAA 57.376 36.364 0.00 0.00 0.00 1.52
4297 7998 4.624336 TTCGCAACACACACACTAAAAT 57.376 36.364 0.00 0.00 0.00 1.82
4298 7999 5.736486 TTCGCAACACACACACTAAAATA 57.264 34.783 0.00 0.00 0.00 1.40
4299 8000 5.933187 TCGCAACACACACACTAAAATAT 57.067 34.783 0.00 0.00 0.00 1.28
4300 8001 6.307031 TCGCAACACACACACTAAAATATT 57.693 33.333 0.00 0.00 0.00 1.28
4301 8002 6.139435 TCGCAACACACACACTAAAATATTG 58.861 36.000 0.00 0.00 0.00 1.90
4307 8008 7.601856 ACACACACACTAAAATATTGGATTGG 58.398 34.615 0.00 0.00 0.00 3.16
4314 8015 7.502561 ACACTAAAATATTGGATTGGGACTAGC 59.497 37.037 0.00 0.00 0.00 3.42
4323 8024 3.879892 GGATTGGGACTAGCAATCAACTC 59.120 47.826 17.83 3.37 37.14 3.01
4352 8053 0.190815 AATGCCCCAACAAACTCCCT 59.809 50.000 0.00 0.00 0.00 4.20
4356 8057 0.251341 CCCCAACAAACTCCCTCCTG 60.251 60.000 0.00 0.00 0.00 3.86
4373 8074 4.141824 CCTCCTGTACTCTCATTCCCTTTC 60.142 50.000 0.00 0.00 0.00 2.62
4383 8084 4.775780 TCTCATTCCCTTTCTCCGAAGTAA 59.224 41.667 0.00 0.00 0.00 2.24
4420 8121 1.707106 TACACACCGAGGGAAGTTCA 58.293 50.000 5.01 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.324943 CTGTGGTCGGTCAGGGATTT 59.675 55.000 0.00 0.00 0.00 2.17
38 39 1.983224 CTGTGGTCGGTCAGGGATT 59.017 57.895 0.00 0.00 0.00 3.01
39 40 2.660064 GCTGTGGTCGGTCAGGGAT 61.660 63.158 0.00 0.00 32.94 3.85
46 47 2.082140 TAGATATGGCTGTGGTCGGT 57.918 50.000 0.00 0.00 0.00 4.69
64 65 2.236395 GCCTGTCTTTCCTAGCTGGTTA 59.764 50.000 0.00 0.00 37.07 2.85
65 66 1.003696 GCCTGTCTTTCCTAGCTGGTT 59.996 52.381 0.00 0.00 37.07 3.67
86 91 3.068165 TGGTCCGTATCAGTGCTTGATAG 59.932 47.826 10.51 6.55 46.69 2.08
96 101 5.904362 TCATCTATGATGGTCCGTATCAG 57.096 43.478 7.58 0.00 37.91 2.90
386 391 1.009829 CACCTTCACGCATCCTAAGC 58.990 55.000 0.00 0.00 0.00 3.09
387 392 1.009829 GCACCTTCACGCATCCTAAG 58.990 55.000 0.00 0.00 0.00 2.18
388 393 0.323302 TGCACCTTCACGCATCCTAA 59.677 50.000 0.00 0.00 31.95 2.69
389 394 0.108186 CTGCACCTTCACGCATCCTA 60.108 55.000 0.00 0.00 37.54 2.94
390 395 1.376424 CTGCACCTTCACGCATCCT 60.376 57.895 0.00 0.00 37.54 3.24
391 396 3.044059 GCTGCACCTTCACGCATCC 62.044 63.158 0.00 0.00 37.54 3.51
392 397 1.855213 TTGCTGCACCTTCACGCATC 61.855 55.000 0.00 0.00 37.54 3.91
393 398 1.246056 ATTGCTGCACCTTCACGCAT 61.246 50.000 0.00 0.00 37.54 4.73
394 399 1.898094 ATTGCTGCACCTTCACGCA 60.898 52.632 0.00 0.00 36.52 5.24
395 400 1.443194 CATTGCTGCACCTTCACGC 60.443 57.895 0.00 0.00 0.00 5.34
396 401 1.210931 CCATTGCTGCACCTTCACG 59.789 57.895 0.00 0.00 0.00 4.35
397 402 1.080298 GCCATTGCTGCACCTTCAC 60.080 57.895 0.00 0.00 33.53 3.18
398 403 2.628696 CGCCATTGCTGCACCTTCA 61.629 57.895 0.00 0.00 34.43 3.02
399 404 2.180017 CGCCATTGCTGCACCTTC 59.820 61.111 0.00 0.00 34.43 3.46
400 405 3.376078 CCGCCATTGCTGCACCTT 61.376 61.111 0.00 0.00 34.43 3.50
418 423 1.074872 GATTTTGCTGCTTGGCGCTC 61.075 55.000 7.64 0.00 40.11 5.03
427 432 2.939103 AGGAGATACGTGATTTTGCTGC 59.061 45.455 0.00 0.00 0.00 5.25
433 438 3.385111 GGTGAGGAGGAGATACGTGATTT 59.615 47.826 0.00 0.00 0.00 2.17
439 444 1.615883 CATGGGTGAGGAGGAGATACG 59.384 57.143 0.00 0.00 0.00 3.06
440 445 2.630580 GACATGGGTGAGGAGGAGATAC 59.369 54.545 0.00 0.00 0.00 2.24
442 447 1.694048 GGACATGGGTGAGGAGGAGAT 60.694 57.143 0.00 0.00 0.00 2.75
465 471 2.520741 GGGAGAGGGAGGCGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
489 501 1.993391 GGGTGATGGGGAAGTCGGA 60.993 63.158 0.00 0.00 0.00 4.55
490 502 2.590092 GGGTGATGGGGAAGTCGG 59.410 66.667 0.00 0.00 0.00 4.79
491 503 2.186903 CGGGTGATGGGGAAGTCG 59.813 66.667 0.00 0.00 0.00 4.18
493 505 3.728373 GGCGGGTGATGGGGAAGT 61.728 66.667 0.00 0.00 0.00 3.01
494 506 4.856801 CGGCGGGTGATGGGGAAG 62.857 72.222 0.00 0.00 0.00 3.46
568 581 3.110178 GACGGTTGAGTTCGGCGG 61.110 66.667 7.21 0.00 0.00 6.13
570 583 3.110178 CCGACGGTTGAGTTCGGC 61.110 66.667 5.48 0.00 37.16 5.54
571 584 1.731969 GTCCGACGGTTGAGTTCGG 60.732 63.158 14.79 2.81 44.43 4.30
572 585 1.731969 GGTCCGACGGTTGAGTTCG 60.732 63.158 14.79 0.00 0.00 3.95
573 586 1.373873 GGGTCCGACGGTTGAGTTC 60.374 63.158 14.79 0.00 0.00 3.01
574 587 2.739132 GGGTCCGACGGTTGAGTT 59.261 61.111 14.79 0.00 0.00 3.01
575 588 3.308705 GGGGTCCGACGGTTGAGT 61.309 66.667 14.79 0.00 0.00 3.41
576 589 2.995574 AGGGGTCCGACGGTTGAG 60.996 66.667 14.79 0.00 0.00 3.02
577 590 2.993264 GAGGGGTCCGACGGTTGA 60.993 66.667 14.79 0.00 0.00 3.18
578 591 4.430765 CGAGGGGTCCGACGGTTG 62.431 72.222 14.79 0.00 0.00 3.77
579 592 4.982701 ACGAGGGGTCCGACGGTT 62.983 66.667 14.79 0.00 34.15 4.44
739 777 1.590932 CGAAGCATCATCCTTCCTGG 58.409 55.000 0.00 0.00 36.26 4.45
747 785 1.137872 AGTGTCTCCCGAAGCATCATC 59.862 52.381 0.00 0.00 0.00 2.92
748 786 1.137872 GAGTGTCTCCCGAAGCATCAT 59.862 52.381 0.00 0.00 0.00 2.45
749 787 0.532573 GAGTGTCTCCCGAAGCATCA 59.467 55.000 0.00 0.00 0.00 3.07
852 894 1.303799 GCAGACCAGACCGTACGAGA 61.304 60.000 18.76 0.00 0.00 4.04
975 1032 4.664392 TCTTCTTCTCTACCGGTTCTTCT 58.336 43.478 15.04 0.00 0.00 2.85
976 1033 4.142337 CCTCTTCTTCTCTACCGGTTCTTC 60.142 50.000 15.04 0.00 0.00 2.87
977 1034 3.764972 CCTCTTCTTCTCTACCGGTTCTT 59.235 47.826 15.04 0.00 0.00 2.52
978 1035 3.010361 TCCTCTTCTTCTCTACCGGTTCT 59.990 47.826 15.04 0.00 0.00 3.01
979 1036 3.354467 TCCTCTTCTTCTCTACCGGTTC 58.646 50.000 15.04 0.00 0.00 3.62
980 1037 3.453059 TCCTCTTCTTCTCTACCGGTT 57.547 47.619 15.04 0.00 0.00 4.44
981 1038 3.053544 TCATCCTCTTCTTCTCTACCGGT 60.054 47.826 13.98 13.98 0.00 5.28
982 1039 3.316868 GTCATCCTCTTCTTCTCTACCGG 59.683 52.174 0.00 0.00 0.00 5.28
983 1040 3.002862 CGTCATCCTCTTCTTCTCTACCG 59.997 52.174 0.00 0.00 0.00 4.02
984 1041 4.035909 GTCGTCATCCTCTTCTTCTCTACC 59.964 50.000 0.00 0.00 0.00 3.18
985 1042 4.260456 CGTCGTCATCCTCTTCTTCTCTAC 60.260 50.000 0.00 0.00 0.00 2.59
986 1043 3.872182 CGTCGTCATCCTCTTCTTCTCTA 59.128 47.826 0.00 0.00 0.00 2.43
987 1044 2.680841 CGTCGTCATCCTCTTCTTCTCT 59.319 50.000 0.00 0.00 0.00 3.10
988 1045 2.678836 TCGTCGTCATCCTCTTCTTCTC 59.321 50.000 0.00 0.00 0.00 2.87
1193 1265 1.234821 CAAGCGCAAGGAACTGGTTA 58.765 50.000 11.47 0.00 40.86 2.85
1196 1268 2.256461 GCAAGCGCAAGGAACTGG 59.744 61.111 11.47 0.00 40.86 4.00
1319 1392 1.607801 CCTGTCGGACTCATGCCTCA 61.608 60.000 9.88 0.00 0.00 3.86
1396 1469 2.352805 CAGGTGCCTGTTCCTCCC 59.647 66.667 9.96 0.00 39.10 4.30
1411 1484 1.132640 GCGCCTTAACGTCTTGCAG 59.867 57.895 0.00 0.00 34.88 4.41
1416 1489 2.181021 CTCCGCGCCTTAACGTCT 59.819 61.111 0.00 0.00 34.88 4.18
1500 1573 4.500116 GACCTCTCGTGCCTCGCC 62.500 72.222 0.00 0.00 39.67 5.54
1557 1630 1.115930 ACGAAGATCTAGGCCGCCAT 61.116 55.000 13.15 0.00 0.00 4.40
1599 1672 1.139256 TCCCTTTTCTGCACACGTGTA 59.861 47.619 22.90 5.85 0.00 2.90
1604 1679 3.181476 ACAACAATCCCTTTTCTGCACAC 60.181 43.478 0.00 0.00 0.00 3.82
1622 1697 5.519722 CAAAGAACATAACCCACTGACAAC 58.480 41.667 0.00 0.00 0.00 3.32
1648 1723 4.331168 GCTAACAGCTATCAAACCACTGAG 59.669 45.833 0.00 0.00 38.45 3.35
1742 1826 7.125792 AGATAGACATTTCATAACGGAACCT 57.874 36.000 0.00 0.00 0.00 3.50
1882 2082 9.317936 CATCACTACATACTGAAATAGCTGAAA 57.682 33.333 0.00 0.00 0.00 2.69
1910 2110 9.847224 GAGAGGAAACTATACCATTGGAATAAA 57.153 33.333 10.37 0.00 44.43 1.40
1911 2111 9.225682 AGAGAGGAAACTATACCATTGGAATAA 57.774 33.333 10.37 0.00 44.43 1.40
2012 2221 6.085849 CCGCAGAAAACAAAATTACGACTTAC 59.914 38.462 0.00 0.00 0.00 2.34
2254 5414 5.119743 GCTCAACCAAATTGAATCAGAAAGC 59.880 40.000 0.00 0.00 46.80 3.51
2300 5540 5.076873 GGAGAGCATATGGACTCTAGAACT 58.923 45.833 11.50 0.00 43.26 3.01
2312 5552 7.672983 AATAAACGTTATGGGAGAGCATATG 57.327 36.000 0.00 0.00 0.00 1.78
2314 5554 9.787435 AATAAATAAACGTTATGGGAGAGCATA 57.213 29.630 0.00 0.00 0.00 3.14
2353 5594 8.402798 TGGACTCTTACAAAAATGAATAAGCA 57.597 30.769 0.00 0.00 0.00 3.91
2465 5706 9.926158 ACAAGCAATTAACATGAACATGAATAA 57.074 25.926 19.56 16.52 41.20 1.40
2492 5733 3.385755 ACCACAACTAGTTCCGTAACAGT 59.614 43.478 4.77 0.00 38.12 3.55
2550 5791 4.193865 CACTTATGCATGATGACCTGACA 58.806 43.478 10.16 0.00 0.00 3.58
2692 5936 0.830444 TAGTGTCGACCACCTTGCCT 60.830 55.000 14.12 0.00 45.74 4.75
2708 5952 1.480954 CACTACCTTGGCGACCATAGT 59.519 52.381 0.00 2.95 29.91 2.12
2741 5985 7.527568 AGTAGTGCAGAAAGTAAGAACTAGT 57.472 36.000 0.00 0.00 33.75 2.57
2742 5986 8.819643 AAAGTAGTGCAGAAAGTAAGAACTAG 57.180 34.615 0.00 0.00 33.75 2.57
2889 6135 0.178964 CCTGCCCAACCTTTTCCTGA 60.179 55.000 0.00 0.00 0.00 3.86
2899 6145 2.203480 TTGGTGAGCCTGCCCAAC 60.203 61.111 0.00 0.00 33.43 3.77
2908 6154 2.175878 ACATCACTCTGTTGGTGAGC 57.824 50.000 0.00 0.00 45.14 4.26
2919 6165 6.238320 GCTTCCATGTAGAATCAACATCACTC 60.238 42.308 0.00 0.00 35.39 3.51
3000 6246 5.065731 CAGTGGCATTCTCATCTCCTTAAAC 59.934 44.000 0.00 0.00 0.00 2.01
3044 6290 4.323417 TGAATTCGGTTCTGTAACAGCAT 58.677 39.130 0.04 0.00 37.34 3.79
3122 6368 5.806818 TGAATTCCCGTGAATGGTAGTTTA 58.193 37.500 2.27 0.00 40.34 2.01
3179 6425 3.263425 ACCAACACTCCGGTAATCAGAAT 59.737 43.478 0.00 0.00 32.31 2.40
3197 6443 4.842531 TCATAGCCATTTCTCTGACCAA 57.157 40.909 0.00 0.00 0.00 3.67
3307 6553 1.852633 TCTGTCTGATGATCACCGGT 58.147 50.000 0.00 0.00 0.00 5.28
3432 6678 4.486125 AACTCCAGGCAACAACAAAAAT 57.514 36.364 0.00 0.00 41.41 1.82
3486 6732 2.972021 TCCAGAGTCCAGACAACAATGA 59.028 45.455 0.00 0.00 0.00 2.57
3572 6818 1.200948 GACACCAAATTCCAGCAGAGC 59.799 52.381 0.00 0.00 0.00 4.09
3629 6875 3.084786 GAGTTCATGAGTTCAAAGGGGG 58.915 50.000 0.00 0.00 0.00 5.40
3640 6886 7.387119 TCAATCCAAATCAAGAGTTCATGAG 57.613 36.000 0.00 0.00 0.00 2.90
3642 6888 8.821147 TTTTCAATCCAAATCAAGAGTTCATG 57.179 30.769 0.00 0.00 0.00 3.07
3644 6890 8.423349 ACATTTTCAATCCAAATCAAGAGTTCA 58.577 29.630 0.00 0.00 0.00 3.18
3653 6948 9.702494 AAGAAGAGAACATTTTCAATCCAAATC 57.298 29.630 0.00 0.00 33.72 2.17
3726 7021 4.469227 AGAGCATACTTGTTCAGTGGATCT 59.531 41.667 0.00 0.00 35.69 2.75
3790 7092 8.560374 GTGCTGGACAAATAGAATAATACTTCC 58.440 37.037 0.00 0.00 0.00 3.46
3845 7514 6.239345 GCTAAACTGGCAGTGGTAGAGTATAT 60.239 42.308 29.23 8.17 0.00 0.86
3848 7517 3.194968 GCTAAACTGGCAGTGGTAGAGTA 59.805 47.826 29.23 12.28 0.00 2.59
3852 7521 2.744202 CAAGCTAAACTGGCAGTGGTAG 59.256 50.000 22.83 23.74 0.00 3.18
3853 7522 2.552155 CCAAGCTAAACTGGCAGTGGTA 60.552 50.000 22.83 15.17 34.53 3.25
3854 7523 1.609208 CAAGCTAAACTGGCAGTGGT 58.391 50.000 22.83 14.83 0.00 4.16
3855 7524 0.883833 CCAAGCTAAACTGGCAGTGG 59.116 55.000 22.83 12.29 33.24 4.00
3860 7529 3.255642 TCATCAAACCAAGCTAAACTGGC 59.744 43.478 1.89 0.00 0.00 4.85
3919 7589 2.291856 GCCTTCTAGTCAGGGCAGT 58.708 57.895 11.36 0.00 43.59 4.40
3928 7598 8.039538 GTGTACTAGGTAATTTTGCCTTCTAGT 58.960 37.037 5.23 6.04 40.63 2.57
3952 7622 1.808945 CCAAGCTAAACTGGCAGAGTG 59.191 52.381 23.66 9.14 34.02 3.51
3958 7628 3.255642 TCATCAAACCAAGCTAAACTGGC 59.744 43.478 1.89 0.00 0.00 4.85
4013 7683 3.294493 GTTTGAGGCGCAAGGGCA 61.294 61.111 10.83 0.00 45.36 5.36
4015 7685 1.580845 CTCAGTTTGAGGCGCAAGGG 61.581 60.000 10.83 0.00 40.71 3.95
4033 7733 0.258774 AACTTGGTGTGTTGCCCTCT 59.741 50.000 0.00 0.00 0.00 3.69
4034 7734 1.975660 TAACTTGGTGTGTTGCCCTC 58.024 50.000 0.00 0.00 0.00 4.30
4042 7742 2.482336 TGTTGCGCTATAACTTGGTGTG 59.518 45.455 9.73 0.00 0.00 3.82
4043 7743 2.773487 TGTTGCGCTATAACTTGGTGT 58.227 42.857 9.73 0.00 0.00 4.16
4056 7756 1.606606 GTGCTGTTAGAATGTTGCGC 58.393 50.000 0.00 0.00 0.00 6.09
4057 7757 1.535028 TGGTGCTGTTAGAATGTTGCG 59.465 47.619 0.00 0.00 0.00 4.85
4058 7758 3.004734 ACTTGGTGCTGTTAGAATGTTGC 59.995 43.478 0.00 0.00 0.00 4.17
4063 7763 6.183360 GCGTTATAACTTGGTGCTGTTAGAAT 60.183 38.462 13.56 0.00 34.08 2.40
4072 7772 3.058501 AGTGTTGCGTTATAACTTGGTGC 60.059 43.478 13.56 9.31 0.00 5.01
4088 7788 2.620112 CCAAGCTGCCGGAGTGTTG 61.620 63.158 5.05 2.52 0.00 3.33
4091 7791 1.448540 CTACCAAGCTGCCGGAGTG 60.449 63.158 5.05 0.00 0.00 3.51
4097 7797 0.255890 TCATTCCCTACCAAGCTGCC 59.744 55.000 0.00 0.00 0.00 4.85
4098 7798 1.210478 TCTCATTCCCTACCAAGCTGC 59.790 52.381 0.00 0.00 0.00 5.25
4105 7805 5.755849 TCCTTTGAATTCTCATTCCCTACC 58.244 41.667 7.05 0.00 38.50 3.18
4110 7810 8.401709 GTCTTGTATCCTTTGAATTCTCATTCC 58.598 37.037 7.05 0.00 38.50 3.01
4111 7811 8.950210 TGTCTTGTATCCTTTGAATTCTCATTC 58.050 33.333 7.05 0.00 39.58 2.67
4123 7823 9.479549 AACAATGGATTATGTCTTGTATCCTTT 57.520 29.630 0.00 0.00 37.90 3.11
4143 7843 1.542987 CCTTGCCCCAACCAAACAATG 60.543 52.381 0.00 0.00 0.00 2.82
4144 7844 0.764271 CCTTGCCCCAACCAAACAAT 59.236 50.000 0.00 0.00 0.00 2.71
4145 7845 1.341156 CCCTTGCCCCAACCAAACAA 61.341 55.000 0.00 0.00 0.00 2.83
4146 7846 1.764054 CCCTTGCCCCAACCAAACA 60.764 57.895 0.00 0.00 0.00 2.83
4147 7847 1.051556 TTCCCTTGCCCCAACCAAAC 61.052 55.000 0.00 0.00 0.00 2.93
4150 7850 0.835543 CAATTCCCTTGCCCCAACCA 60.836 55.000 0.00 0.00 0.00 3.67
4152 7852 0.321346 CACAATTCCCTTGCCCCAAC 59.679 55.000 0.00 0.00 38.50 3.77
4154 7854 1.229145 CCACAATTCCCTTGCCCCA 60.229 57.895 0.00 0.00 38.50 4.96
4157 7857 0.897621 CCTTCCACAATTCCCTTGCC 59.102 55.000 0.00 0.00 38.50 4.52
4162 7862 1.287739 TCCCATCCTTCCACAATTCCC 59.712 52.381 0.00 0.00 0.00 3.97
4168 7868 2.061848 TCAGTTTCCCATCCTTCCACA 58.938 47.619 0.00 0.00 0.00 4.17
4169 7869 2.879103 TCAGTTTCCCATCCTTCCAC 57.121 50.000 0.00 0.00 0.00 4.02
4170 7870 4.402616 AATTCAGTTTCCCATCCTTCCA 57.597 40.909 0.00 0.00 0.00 3.53
4185 7886 9.007901 ACTTGAGATTTGACCTTCTTAATTCAG 57.992 33.333 0.00 0.00 0.00 3.02
4209 7910 2.499827 GGGGCGCGGAAGAGATACT 61.500 63.158 8.83 0.00 0.00 2.12
4222 7923 2.951229 AGGTGAATTAATAGGGGGCG 57.049 50.000 0.00 0.00 0.00 6.13
4242 7943 3.525862 ACTCAAGAGGAAATCTCACCCT 58.474 45.455 1.73 0.00 44.81 4.34
4246 7947 3.909995 TGGGAACTCAAGAGGAAATCTCA 59.090 43.478 1.73 0.00 44.81 3.27
4259 7960 2.935238 GCGAATTAGCAGTGGGAACTCA 60.935 50.000 5.59 0.00 37.05 3.41
4260 7961 1.666189 GCGAATTAGCAGTGGGAACTC 59.334 52.381 5.59 0.00 37.05 3.01
4287 7988 7.645058 AGTCCCAATCCAATATTTTAGTGTG 57.355 36.000 0.00 0.00 0.00 3.82
4291 7992 8.463930 TTGCTAGTCCCAATCCAATATTTTAG 57.536 34.615 0.00 0.00 0.00 1.85
4292 7993 9.077885 GATTGCTAGTCCCAATCCAATATTTTA 57.922 33.333 9.30 0.00 41.55 1.52
4293 7994 7.564660 TGATTGCTAGTCCCAATCCAATATTTT 59.435 33.333 15.01 0.00 44.91 1.82
4294 7995 7.068702 TGATTGCTAGTCCCAATCCAATATTT 58.931 34.615 15.01 0.00 44.91 1.40
4296 7997 6.204852 TGATTGCTAGTCCCAATCCAATAT 57.795 37.500 15.01 0.00 44.91 1.28
4297 7998 5.645056 TGATTGCTAGTCCCAATCCAATA 57.355 39.130 15.01 0.00 44.91 1.90
4298 7999 4.524802 TGATTGCTAGTCCCAATCCAAT 57.475 40.909 15.01 4.11 44.91 3.16
4299 8000 4.016444 GTTGATTGCTAGTCCCAATCCAA 58.984 43.478 15.01 9.15 44.91 3.53
4300 8001 3.266772 AGTTGATTGCTAGTCCCAATCCA 59.733 43.478 15.01 5.58 44.91 3.41
4301 8002 3.879892 GAGTTGATTGCTAGTCCCAATCC 59.120 47.826 15.01 5.13 44.91 3.01
4307 8008 3.895232 TGGAGAGTTGATTGCTAGTCC 57.105 47.619 0.00 0.00 0.00 3.85
4314 8015 5.393461 GGCATTAGGTTTGGAGAGTTGATTG 60.393 44.000 0.00 0.00 0.00 2.67
4323 8024 1.824852 GTTGGGGCATTAGGTTTGGAG 59.175 52.381 0.00 0.00 0.00 3.86
4352 8053 4.689062 AGAAAGGGAATGAGAGTACAGGA 58.311 43.478 0.00 0.00 0.00 3.86
4356 8057 3.700038 TCGGAGAAAGGGAATGAGAGTAC 59.300 47.826 0.00 0.00 0.00 2.73
4373 8074 1.193874 GCGTGTTTGGTTACTTCGGAG 59.806 52.381 0.00 0.00 0.00 4.63
4383 8084 3.744426 GTGTATCACTTAGCGTGTTTGGT 59.256 43.478 0.00 0.00 44.16 3.67
4404 8105 0.246635 CGATGAACTTCCCTCGGTGT 59.753 55.000 3.91 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.