Multiple sequence alignment - TraesCS4A01G046100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G046100 chr4A 100.000 6998 0 0 1 6998 37824842 37817845 0.000000e+00 12923
1 TraesCS4A01G046100 chr4D 92.293 4074 181 63 2662 6670 428573364 428577369 0.000000e+00 5661
2 TraesCS4A01G046100 chr4D 90.821 2157 133 26 1 2144 428570940 428573044 0.000000e+00 2826
3 TraesCS4A01G046100 chr4D 94.895 333 11 3 2173 2505 428573044 428573370 3.740000e-142 516
4 TraesCS4A01G046100 chr4B 90.609 2545 141 44 1 2505 526952095 526949609 0.000000e+00 3286
5 TraesCS4A01G046100 chr4B 94.583 2086 77 15 4607 6670 526947423 526945352 0.000000e+00 3193
6 TraesCS4A01G046100 chr4B 96.822 1353 33 4 3264 4606 526948846 526947494 0.000000e+00 2252
7 TraesCS4A01G046100 chr4B 96.417 614 13 3 2662 3268 526949615 526949004 0.000000e+00 1003
8 TraesCS4A01G046100 chr4B 89.720 107 9 2 6669 6775 526945323 526945219 1.220000e-27 135
9 TraesCS4A01G046100 chr6A 94.118 170 9 1 2497 2665 586573070 586572901 2.500000e-64 257
10 TraesCS4A01G046100 chr5B 93.902 164 9 1 2503 2665 673081829 673081666 5.420000e-61 246
11 TraesCS4A01G046100 chr5B 93.865 163 9 1 2501 2662 635175165 635175327 1.950000e-60 244
12 TraesCS4A01G046100 chr2B 93.865 163 9 1 2504 2665 144384421 144384259 1.950000e-60 244
13 TraesCS4A01G046100 chr2B 92.353 170 12 1 2497 2665 327956720 327956551 2.520000e-59 241
14 TraesCS4A01G046100 chr6B 92.353 170 12 1 2503 2671 432481048 432480879 2.520000e-59 241
15 TraesCS4A01G046100 chr3D 93.293 164 9 2 2503 2665 486137317 486137155 2.520000e-59 241
16 TraesCS4A01G046100 chr2D 93.293 164 10 1 2503 2665 105964540 105964377 2.520000e-59 241
17 TraesCS4A01G046100 chr1B 93.789 161 9 1 2503 2662 426865663 426865823 2.520000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G046100 chr4A 37817845 37824842 6997 True 12923.0 12923 100.000000 1 6998 1 chr4A.!!$R1 6997
1 TraesCS4A01G046100 chr4D 428570940 428577369 6429 False 3001.0 5661 92.669667 1 6670 3 chr4D.!!$F1 6669
2 TraesCS4A01G046100 chr4B 526945219 526952095 6876 True 1973.8 3286 93.630200 1 6775 5 chr4B.!!$R1 6774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 228 0.254462 TCTAATTCCACCATGCCGCA 59.746 50.000 0.00 0.00 0.00 5.69 F
1135 1148 0.540454 GTACGCCTTTCTAGCCCCTT 59.460 55.000 0.00 0.00 0.00 3.95 F
2032 2071 0.250901 ACCATGCACAAGTCCTGGAC 60.251 55.000 19.20 19.20 0.00 4.02 F
2609 2650 0.118346 TCCCTTGTTAGCCCTCCAGA 59.882 55.000 0.00 0.00 0.00 3.86 F
3896 4118 0.878416 TTCCATGTACTTTGCGTGGC 59.122 50.000 0.00 0.00 41.51 5.01 F
3926 4148 1.888512 TCAGAAAGTCAAAGCCATGGC 59.111 47.619 30.12 30.12 42.33 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2031 0.035725 CACTGGAGAAGCTCATGGCA 60.036 55.000 8.58 0.00 44.79 4.92 R
2590 2631 0.118346 TCTGGAGGGCTAACAAGGGA 59.882 55.000 0.00 0.00 0.00 4.20 R
3879 4099 1.134487 CGCCACGCAAAGTACATGG 59.866 57.895 0.00 0.00 0.00 3.66 R
4049 4273 0.321919 TGAAGCACAGTGATCCTGCC 60.322 55.000 4.15 3.77 45.68 4.85 R
4770 5079 2.496070 GGTGGAGTAAAAAGGGGAATGC 59.504 50.000 0.00 0.00 0.00 3.56 R
6309 6633 0.716108 CATCCAACTTCGACACGAGC 59.284 55.000 0.00 0.00 37.14 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.574322 CACTGCTAATTCGCAACACAC 58.426 47.619 6.10 0.00 39.80 3.82
27 28 2.286713 TGCTAATTCGCAACACACACAC 60.287 45.455 1.54 0.00 36.89 3.82
28 29 2.032030 GCTAATTCGCAACACACACACT 60.032 45.455 0.00 0.00 0.00 3.55
36 37 6.307031 TCGCAACACACACACTAAAATATT 57.693 33.333 0.00 0.00 0.00 1.28
43 44 7.601856 ACACACACACTAAAATATTGGATTGG 58.398 34.615 0.00 0.00 0.00 3.16
50 51 7.502561 ACACTAAAATATTGGATTGGGACTAGC 59.497 37.037 0.00 0.00 0.00 3.42
59 60 3.879892 GGATTGGGACTAGCAATCAACTC 59.120 47.826 17.83 3.37 37.14 3.01
156 157 1.707106 TACACACCGAGGGAAGTTCA 58.293 50.000 5.01 0.00 0.00 3.18
203 204 1.452953 CCGGCTACTCCATGCTACGA 61.453 60.000 0.00 0.00 34.01 3.43
221 222 6.041637 TGCTACGATACTTCTAATTCCACCAT 59.958 38.462 0.00 0.00 0.00 3.55
225 226 2.643551 ACTTCTAATTCCACCATGCCG 58.356 47.619 0.00 0.00 0.00 5.69
227 228 0.254462 TCTAATTCCACCATGCCGCA 59.746 50.000 0.00 0.00 0.00 5.69
228 229 1.133823 TCTAATTCCACCATGCCGCAT 60.134 47.619 0.00 0.00 0.00 4.73
242 243 1.376424 CGCATGCTTGTGACCTCCT 60.376 57.895 17.13 0.00 35.26 3.69
249 250 1.280421 GCTTGTGACCTCCTCCTTGAT 59.720 52.381 0.00 0.00 0.00 2.57
253 254 2.711009 TGTGACCTCCTCCTTGATTTGT 59.289 45.455 0.00 0.00 0.00 2.83
296 297 0.716108 CTCGTTGTCGAAGATGCCAC 59.284 55.000 0.00 0.00 45.61 5.01
324 325 4.201608 CGCTACTTTTAAATTCGCCACGTA 60.202 41.667 0.00 0.00 0.00 3.57
343 344 5.009410 CACGTAGGGAGTAGGATAACGAAAT 59.991 44.000 0.00 0.00 33.40 2.17
345 346 6.944862 ACGTAGGGAGTAGGATAACGAAATAT 59.055 38.462 0.00 0.00 33.40 1.28
356 357 7.697691 AGGATAACGAAATATGTGCTCTTTTG 58.302 34.615 0.00 0.00 0.00 2.44
412 417 2.738643 CGAGTAGATTGGCGATGTTGGT 60.739 50.000 0.00 0.00 0.00 3.67
448 453 5.628193 CGAAGACGACACATTACACTACTTT 59.372 40.000 0.00 0.00 42.66 2.66
449 454 6.183359 CGAAGACGACACATTACACTACTTTC 60.183 42.308 0.00 0.00 42.66 2.62
493 498 3.508762 TGATAACCGAAGACGCTCTTTC 58.491 45.455 2.51 0.00 36.73 2.62
501 506 4.961511 ACGCTCTTTCGTGCCGCA 62.962 61.111 0.00 0.00 41.62 5.69
563 568 1.278985 ACGATGTTGGGCTTCTCATCA 59.721 47.619 0.00 0.00 37.21 3.07
565 570 3.134623 ACGATGTTGGGCTTCTCATCATA 59.865 43.478 0.00 0.00 37.21 2.15
566 571 4.129380 CGATGTTGGGCTTCTCATCATAA 58.871 43.478 0.00 0.00 37.21 1.90
568 573 5.066375 CGATGTTGGGCTTCTCATCATAAAA 59.934 40.000 0.00 0.00 37.21 1.52
619 624 1.745087 CACACCACAGGCATGATAACC 59.255 52.381 4.84 0.00 0.00 2.85
650 655 2.041430 TTCCACGGGCCATAGGGA 59.959 61.111 4.39 2.31 35.59 4.20
658 663 2.530406 GCCATAGGGAGGAGGGGG 60.530 72.222 0.00 0.00 35.59 5.40
659 664 3.115017 GCCATAGGGAGGAGGGGGA 62.115 68.421 0.00 0.00 35.59 4.81
681 686 7.162082 GGGACCTTTCTCGTTATCATATCATT 58.838 38.462 0.00 0.00 0.00 2.57
718 723 3.690139 GCAAAAGTAAGCTACTCCTTCCC 59.310 47.826 0.00 0.00 38.26 3.97
736 741 5.507315 CCTTCCCATCCGCAACAATTAATAC 60.507 44.000 0.00 0.00 0.00 1.89
737 742 4.527944 TCCCATCCGCAACAATTAATACA 58.472 39.130 0.00 0.00 0.00 2.29
738 743 4.950475 TCCCATCCGCAACAATTAATACAA 59.050 37.500 0.00 0.00 0.00 2.41
740 745 6.097554 TCCCATCCGCAACAATTAATACAAAT 59.902 34.615 0.00 0.00 0.00 2.32
794 803 4.920640 ACTTGACGCTACTACTGCATAT 57.079 40.909 0.00 0.00 0.00 1.78
795 804 6.387041 AACTTGACGCTACTACTGCATATA 57.613 37.500 0.00 0.00 0.00 0.86
796 805 6.003234 ACTTGACGCTACTACTGCATATAG 57.997 41.667 4.06 4.06 0.00 1.31
797 806 5.763698 ACTTGACGCTACTACTGCATATAGA 59.236 40.000 11.16 0.00 0.00 1.98
798 807 6.431543 ACTTGACGCTACTACTGCATATAGAT 59.568 38.462 11.16 0.76 0.00 1.98
799 808 6.424176 TGACGCTACTACTGCATATAGATC 57.576 41.667 11.16 0.00 0.00 2.75
836 845 8.670521 AATTTGGAAAACCTAAATCTCATCCT 57.329 30.769 0.00 0.00 35.28 3.24
840 849 9.594936 TTGGAAAACCTAAATCTCATCCTTAAA 57.405 29.630 0.00 0.00 0.00 1.52
870 879 5.509670 GCTCCCAAATTAATCATTACCTGGC 60.510 44.000 0.00 0.00 0.00 4.85
931 944 2.159114 ACAAACCCACACATTGCTTCAC 60.159 45.455 0.00 0.00 0.00 3.18
962 975 2.461637 CCCTTCCCCTTCTCCCCT 59.538 66.667 0.00 0.00 0.00 4.79
966 979 2.824388 CTTCCCCTTCTCCCCTCCGT 62.824 65.000 0.00 0.00 0.00 4.69
967 980 2.285442 CCCCTTCTCCCCTCCGTT 60.285 66.667 0.00 0.00 0.00 4.44
1003 1016 1.568118 CCCCTACCGAACCCCAATGT 61.568 60.000 0.00 0.00 0.00 2.71
1008 1021 1.743995 CCGAACCCCAATGTCGTCC 60.744 63.158 0.00 0.00 0.00 4.79
1129 1142 4.363999 CATCTGGAAGTACGCCTTTCTAG 58.636 47.826 8.89 4.89 32.03 2.43
1135 1148 0.540454 GTACGCCTTTCTAGCCCCTT 59.460 55.000 0.00 0.00 0.00 3.95
1169 1182 4.742201 CCGCGCCCCATATCTCCG 62.742 72.222 0.00 0.00 0.00 4.63
1170 1183 3.991051 CGCGCCCCATATCTCCGT 61.991 66.667 0.00 0.00 0.00 4.69
1191 1204 3.431725 CCCCTTGTTTCGAGCGGC 61.432 66.667 0.00 0.00 0.00 6.53
1425 1438 2.689983 GCGTCAGATCAATTTTGGGGAT 59.310 45.455 0.00 0.00 0.00 3.85
1437 1450 2.278657 TTGGGGATGGTGATGTAGGA 57.721 50.000 0.00 0.00 0.00 2.94
1485 1499 9.163899 GCCTTTTAGGTCTTGTATATATAAGCC 57.836 37.037 12.98 15.48 37.80 4.35
1504 1519 3.722728 CCTTTTAGGCCTGATGATTGC 57.277 47.619 17.99 0.00 0.00 3.56
1506 1521 4.464008 CCTTTTAGGCCTGATGATTGCTA 58.536 43.478 17.99 0.00 0.00 3.49
1509 1524 4.980339 TTAGGCCTGATGATTGCTATGA 57.020 40.909 17.99 0.00 0.00 2.15
1515 1530 4.093115 GCCTGATGATTGCTATGAGATTCG 59.907 45.833 0.00 0.00 0.00 3.34
1533 1548 1.644786 CGCATCGTTTCACCCTTCCC 61.645 60.000 0.00 0.00 0.00 3.97
1538 1553 1.072648 TCGTTTCACCCTTCCCGATTT 59.927 47.619 0.00 0.00 0.00 2.17
1567 1582 1.059979 CACATTTGCATGACATTGCGC 59.940 47.619 0.00 0.00 45.77 6.09
1572 1587 1.101331 TGCATGACATTGCGCCATTA 58.899 45.000 4.18 0.00 45.77 1.90
1652 1667 5.582665 GCTAAATGAGTCTTACAGGGAGTTG 59.417 44.000 0.00 0.00 0.00 3.16
1762 1777 7.175104 AGTCCCTAGATATGAGAGATTGACTC 58.825 42.308 0.00 0.00 45.22 3.36
1992 2031 7.178983 TGAGAAACATTTTATGGATCAAGCCTT 59.821 33.333 0.00 0.00 33.60 4.35
1993 2032 7.325694 AGAAACATTTTATGGATCAAGCCTTG 58.674 34.615 0.00 0.00 33.60 3.61
2015 2054 2.354259 CATGAGCTTCTCCAGTGAACC 58.646 52.381 0.00 0.00 0.00 3.62
2021 2060 1.808945 CTTCTCCAGTGAACCATGCAC 59.191 52.381 0.00 0.00 36.53 4.57
2032 2071 0.250901 ACCATGCACAAGTCCTGGAC 60.251 55.000 19.20 19.20 0.00 4.02
2505 2546 4.484912 AGGGTGAAGTAGATGGGAGATAC 58.515 47.826 0.00 0.00 0.00 2.24
2506 2547 4.171044 AGGGTGAAGTAGATGGGAGATACT 59.829 45.833 0.00 0.00 0.00 2.12
2507 2548 4.902448 GGGTGAAGTAGATGGGAGATACTT 59.098 45.833 0.00 0.00 41.28 2.24
2511 2552 6.584185 GAAGTAGATGGGAGATACTTCCTC 57.416 45.833 11.48 0.00 44.90 3.71
2512 2553 5.479027 GAAGTAGATGGGAGATACTTCCTCC 59.521 48.000 11.48 0.00 44.90 4.30
2529 2570 8.582891 ACTTCCTCCATTCCTTTATATAAGGT 57.417 34.615 4.13 0.00 38.55 3.50
2530 2571 8.440771 ACTTCCTCCATTCCTTTATATAAGGTG 58.559 37.037 4.13 0.00 38.55 4.00
2531 2572 7.947782 TCCTCCATTCCTTTATATAAGGTGT 57.052 36.000 4.13 2.81 38.55 4.16
2532 2573 9.455144 TTCCTCCATTCCTTTATATAAGGTGTA 57.545 33.333 4.13 3.09 38.55 2.90
2533 2574 9.629649 TCCTCCATTCCTTTATATAAGGTGTAT 57.370 33.333 4.13 4.58 38.55 2.29
2565 2606 9.753674 TTTTGATAAGATTCCAGAATGTAAGGT 57.246 29.630 0.00 0.00 0.00 3.50
2566 2607 8.737168 TTGATAAGATTCCAGAATGTAAGGTG 57.263 34.615 0.00 0.00 0.00 4.00
2567 2608 6.767902 TGATAAGATTCCAGAATGTAAGGTGC 59.232 38.462 0.00 0.00 0.00 5.01
2568 2609 4.574674 AGATTCCAGAATGTAAGGTGCA 57.425 40.909 0.00 0.00 0.00 4.57
2569 2610 5.121380 AGATTCCAGAATGTAAGGTGCAT 57.879 39.130 0.00 0.00 0.00 3.96
2570 2611 5.513233 AGATTCCAGAATGTAAGGTGCATT 58.487 37.500 0.00 0.00 39.04 3.56
2571 2612 5.954150 AGATTCCAGAATGTAAGGTGCATTT 59.046 36.000 0.00 0.00 36.77 2.32
2572 2613 5.643379 TTCCAGAATGTAAGGTGCATTTC 57.357 39.130 0.00 0.00 36.77 2.17
2573 2614 4.922206 TCCAGAATGTAAGGTGCATTTCT 58.078 39.130 0.00 0.00 36.77 2.52
2574 2615 5.324409 TCCAGAATGTAAGGTGCATTTCTT 58.676 37.500 0.00 0.00 36.77 2.52
2575 2616 6.480763 TCCAGAATGTAAGGTGCATTTCTTA 58.519 36.000 0.00 0.00 36.77 2.10
2576 2617 7.118723 TCCAGAATGTAAGGTGCATTTCTTAT 58.881 34.615 9.32 0.00 36.77 1.73
2577 2618 8.271458 TCCAGAATGTAAGGTGCATTTCTTATA 58.729 33.333 9.32 7.84 36.77 0.98
2578 2619 8.902806 CCAGAATGTAAGGTGCATTTCTTATAA 58.097 33.333 9.32 0.00 36.77 0.98
2583 2624 9.646522 ATGTAAGGTGCATTTCTTATAATTCCT 57.353 29.630 9.32 0.00 0.00 3.36
2584 2625 9.120538 TGTAAGGTGCATTTCTTATAATTCCTC 57.879 33.333 9.32 0.00 0.00 3.71
2585 2626 9.120538 GTAAGGTGCATTTCTTATAATTCCTCA 57.879 33.333 9.32 0.00 0.00 3.86
2586 2627 8.773033 AAGGTGCATTTCTTATAATTCCTCAT 57.227 30.769 0.00 0.00 0.00 2.90
2587 2628 9.866655 AAGGTGCATTTCTTATAATTCCTCATA 57.133 29.630 0.00 0.00 0.00 2.15
2588 2629 9.866655 AGGTGCATTTCTTATAATTCCTCATAA 57.133 29.630 0.00 0.00 0.00 1.90
2601 2642 7.588497 AATTCCTCATAATTCCCTTGTTAGC 57.412 36.000 0.00 0.00 0.00 3.09
2602 2643 5.048846 TCCTCATAATTCCCTTGTTAGCC 57.951 43.478 0.00 0.00 0.00 3.93
2603 2644 4.141251 TCCTCATAATTCCCTTGTTAGCCC 60.141 45.833 0.00 0.00 0.00 5.19
2604 2645 4.141158 CCTCATAATTCCCTTGTTAGCCCT 60.141 45.833 0.00 0.00 0.00 5.19
2605 2646 5.048846 TCATAATTCCCTTGTTAGCCCTC 57.951 43.478 0.00 0.00 0.00 4.30
2606 2647 2.828661 AATTCCCTTGTTAGCCCTCC 57.171 50.000 0.00 0.00 0.00 4.30
2607 2648 1.681229 ATTCCCTTGTTAGCCCTCCA 58.319 50.000 0.00 0.00 0.00 3.86
2608 2649 0.991920 TTCCCTTGTTAGCCCTCCAG 59.008 55.000 0.00 0.00 0.00 3.86
2609 2650 0.118346 TCCCTTGTTAGCCCTCCAGA 59.882 55.000 0.00 0.00 0.00 3.86
2610 2651 0.991920 CCCTTGTTAGCCCTCCAGAA 59.008 55.000 0.00 0.00 0.00 3.02
2611 2652 1.354368 CCCTTGTTAGCCCTCCAGAAA 59.646 52.381 0.00 0.00 0.00 2.52
2612 2653 2.225017 CCCTTGTTAGCCCTCCAGAAAA 60.225 50.000 0.00 0.00 0.00 2.29
2613 2654 3.496331 CCTTGTTAGCCCTCCAGAAAAA 58.504 45.455 0.00 0.00 0.00 1.94
2633 2674 6.688073 AAAAAGGAAGTATCTCTGTCCTGA 57.312 37.500 0.00 0.00 39.65 3.86
2634 2675 6.882768 AAAAGGAAGTATCTCTGTCCTGAT 57.117 37.500 0.00 0.00 39.65 2.90
2635 2676 6.882768 AAAGGAAGTATCTCTGTCCTGATT 57.117 37.500 0.00 0.00 39.65 2.57
2636 2677 5.867903 AGGAAGTATCTCTGTCCTGATTG 57.132 43.478 0.00 0.00 39.09 2.67
2637 2678 5.276440 AGGAAGTATCTCTGTCCTGATTGT 58.724 41.667 0.00 0.00 39.09 2.71
2638 2679 5.362430 AGGAAGTATCTCTGTCCTGATTGTC 59.638 44.000 0.00 0.00 39.09 3.18
2639 2680 5.362430 GGAAGTATCTCTGTCCTGATTGTCT 59.638 44.000 0.00 0.00 0.00 3.41
2640 2681 5.850557 AGTATCTCTGTCCTGATTGTCTG 57.149 43.478 0.00 0.00 0.00 3.51
2641 2682 5.268387 AGTATCTCTGTCCTGATTGTCTGT 58.732 41.667 0.00 0.00 0.00 3.41
2642 2683 6.427441 AGTATCTCTGTCCTGATTGTCTGTA 58.573 40.000 0.00 0.00 0.00 2.74
2643 2684 7.066142 AGTATCTCTGTCCTGATTGTCTGTAT 58.934 38.462 0.00 0.00 0.00 2.29
2644 2685 5.843673 TCTCTGTCCTGATTGTCTGTATC 57.156 43.478 0.00 0.00 0.00 2.24
2645 2686 5.514169 TCTCTGTCCTGATTGTCTGTATCT 58.486 41.667 0.00 0.00 0.00 1.98
2646 2687 5.592282 TCTCTGTCCTGATTGTCTGTATCTC 59.408 44.000 0.00 0.00 0.00 2.75
2647 2688 5.514169 TCTGTCCTGATTGTCTGTATCTCT 58.486 41.667 0.00 0.00 0.00 3.10
2648 2689 5.592282 TCTGTCCTGATTGTCTGTATCTCTC 59.408 44.000 0.00 0.00 0.00 3.20
2649 2690 4.646945 TGTCCTGATTGTCTGTATCTCTCC 59.353 45.833 0.00 0.00 0.00 3.71
2650 2691 4.892934 GTCCTGATTGTCTGTATCTCTCCT 59.107 45.833 0.00 0.00 0.00 3.69
2651 2692 5.362430 GTCCTGATTGTCTGTATCTCTCCTT 59.638 44.000 0.00 0.00 0.00 3.36
2652 2693 5.362143 TCCTGATTGTCTGTATCTCTCCTTG 59.638 44.000 0.00 0.00 0.00 3.61
2653 2694 5.128499 CCTGATTGTCTGTATCTCTCCTTGT 59.872 44.000 0.00 0.00 0.00 3.16
2654 2695 5.970592 TGATTGTCTGTATCTCTCCTTGTG 58.029 41.667 0.00 0.00 0.00 3.33
2655 2696 4.808414 TTGTCTGTATCTCTCCTTGTGG 57.192 45.455 0.00 0.00 0.00 4.17
2656 2697 2.497675 TGTCTGTATCTCTCCTTGTGGC 59.502 50.000 0.00 0.00 0.00 5.01
2657 2698 2.497675 GTCTGTATCTCTCCTTGTGGCA 59.502 50.000 0.00 0.00 0.00 4.92
2658 2699 3.055819 GTCTGTATCTCTCCTTGTGGCAA 60.056 47.826 0.00 0.00 0.00 4.52
2659 2700 3.582647 TCTGTATCTCTCCTTGTGGCAAA 59.417 43.478 0.00 0.00 0.00 3.68
2660 2701 4.041567 TCTGTATCTCTCCTTGTGGCAAAA 59.958 41.667 0.00 0.00 0.00 2.44
2661 2702 4.326826 TGTATCTCTCCTTGTGGCAAAAG 58.673 43.478 10.60 10.60 0.00 2.27
2662 2703 2.276732 TCTCTCCTTGTGGCAAAAGG 57.723 50.000 27.63 27.63 44.79 3.11
2932 2979 3.097614 TCCCTTAACTGGAGTCAGCTAC 58.902 50.000 0.00 0.00 44.59 3.58
3030 3078 5.620206 AGTTGTGTTGGACTTATGACATCA 58.380 37.500 0.00 0.00 0.00 3.07
3190 3238 6.928492 TGAATCACCTTTCCTTTTGTTATTGC 59.072 34.615 0.00 0.00 0.00 3.56
3245 3293 7.055667 TGGTGGCACAAATTATTTTACTTGA 57.944 32.000 20.82 0.00 44.16 3.02
3294 3504 7.606456 TCAAAGGTATTGGACTAATCACACTTC 59.394 37.037 0.00 0.00 0.00 3.01
3548 3761 1.406180 GTTGGTAACCTTTTGTGCGGT 59.594 47.619 0.00 0.00 34.27 5.68
3786 4006 2.144482 ACGTGTTACGACTTTCCTGG 57.856 50.000 8.48 0.00 46.05 4.45
3892 4114 6.949578 ATTGATTTTTCCATGTACTTTGCG 57.050 33.333 0.00 0.00 0.00 4.85
3896 4118 0.878416 TTCCATGTACTTTGCGTGGC 59.122 50.000 0.00 0.00 41.51 5.01
3926 4148 1.888512 TCAGAAAGTCAAAGCCATGGC 59.111 47.619 30.12 30.12 42.33 4.40
3943 4165 3.552604 TGGCGCATCTTTTTAAGTGTC 57.447 42.857 10.83 0.00 0.00 3.67
4013 4237 4.583871 TGATTTTTGTTGGCAAAGGTTGT 58.416 34.783 0.00 0.00 44.32 3.32
4049 4273 6.535508 GGTTTGTTCTTGTATGAGGCTAGTAG 59.464 42.308 0.00 0.00 0.00 2.57
4145 4369 6.711194 TGGAAAACCATTTGTACTTGTATCGA 59.289 34.615 0.00 0.00 0.00 3.59
4528 4764 8.154649 ACAGTCTTAACCTTATTGAACACTTG 57.845 34.615 0.00 0.00 0.00 3.16
4599 4835 2.292016 CCACACACTGGAAAATTGCGTA 59.708 45.455 0.00 0.00 43.95 4.42
4635 4941 1.888512 ACAACTGTGCAATGATCACCC 59.111 47.619 0.00 0.00 33.71 4.61
4644 4950 3.382227 TGCAATGATCACCCAGCAAATAG 59.618 43.478 0.00 0.00 0.00 1.73
4645 4951 3.382546 GCAATGATCACCCAGCAAATAGT 59.617 43.478 0.00 0.00 0.00 2.12
4716 5025 6.428159 GTGGTCATCTTCTATTTCAGTGTTGT 59.572 38.462 0.00 0.00 0.00 3.32
4736 5045 8.821894 GTGTTGTTAATTATTTTGCTGTCCAAA 58.178 29.630 0.00 0.00 41.48 3.28
4764 5073 6.739331 AATTTTGTTGGTTACCTGGATCAA 57.261 33.333 0.00 0.00 0.00 2.57
4765 5074 6.933514 ATTTTGTTGGTTACCTGGATCAAT 57.066 33.333 0.00 0.00 0.00 2.57
4769 5078 6.381498 TGTTGGTTACCTGGATCAATAGAA 57.619 37.500 0.00 0.00 0.00 2.10
4770 5079 6.414732 TGTTGGTTACCTGGATCAATAGAAG 58.585 40.000 0.00 0.00 0.00 2.85
4822 5134 1.202245 GCTGCTTCCAGTCTAGACTCG 60.202 57.143 22.76 16.66 40.20 4.18
4959 5271 8.989980 ACTTTTGACTTGTACTATCTTTGCTAC 58.010 33.333 0.00 0.00 0.00 3.58
5108 5420 6.770785 TGGAGCAACTGTTGTAAATCTTAGTT 59.229 34.615 20.57 0.00 0.00 2.24
5156 5468 3.053019 TGCAGGTTGGGATTATCCATTCA 60.053 43.478 13.78 0.00 38.64 2.57
5340 5652 4.536364 ACAAATGTCACGACTTTGTCAG 57.464 40.909 15.71 5.04 37.73 3.51
5531 5843 8.737175 TGAGATACGTTGTCTCTTGTTACTATT 58.263 33.333 22.99 0.00 42.04 1.73
5605 5922 5.845103 TGATGTGAATGTGTGCTTCAAATT 58.155 33.333 0.00 0.00 36.75 1.82
5700 6018 5.738693 TGCGATTTTGCTTATTTCATCTTCG 59.261 36.000 0.00 0.00 35.36 3.79
5734 6052 5.336213 GCATGTTGAAACCAATCATCACTCT 60.336 40.000 0.00 0.00 33.24 3.24
5735 6053 5.694231 TGTTGAAACCAATCATCACTCTG 57.306 39.130 0.00 0.00 0.00 3.35
5976 6296 1.003233 GGCCACCCTTCTGTCAGAC 60.003 63.158 0.78 0.00 0.00 3.51
5985 6305 3.506810 CCTTCTGTCAGACATCGAAGAC 58.493 50.000 24.47 0.00 42.51 3.01
5999 6319 2.025793 TCGAAGACCTCAGGATCTGACT 60.026 50.000 0.00 0.00 35.39 3.41
6003 6323 3.364549 AGACCTCAGGATCTGACTTCTG 58.635 50.000 0.00 0.00 35.39 3.02
6007 6327 1.202330 CAGGATCTGACTTCTGCCCT 58.798 55.000 0.00 0.00 32.44 5.19
6029 6349 4.498241 TGCCTGTTGCTCGATATATCATC 58.502 43.478 13.11 1.92 42.00 2.92
6030 6350 3.549471 GCCTGTTGCTCGATATATCATCG 59.451 47.826 13.11 1.79 42.38 3.84
6031 6351 3.549471 CCTGTTGCTCGATATATCATCGC 59.451 47.826 13.11 11.14 40.95 4.58
6040 6360 5.324697 TCGATATATCATCGCAAAGTCGAG 58.675 41.667 13.11 0.00 42.14 4.04
6087 6407 5.770417 ACTTGATATAGTAACTAGCACCGC 58.230 41.667 0.00 0.00 0.00 5.68
6113 6433 7.063780 CAGTTCCCAAGCAAGCTTTAAAATATG 59.936 37.037 4.24 0.00 33.42 1.78
6120 6440 5.127682 AGCAAGCTTTAAAATATGGACCTGG 59.872 40.000 0.00 0.00 0.00 4.45
6151 6471 1.890041 TGGCGTGTGTTTCCCTTCG 60.890 57.895 0.00 0.00 0.00 3.79
6157 6477 2.286184 CGTGTGTTTCCCTTCGAACTTG 60.286 50.000 0.00 0.00 0.00 3.16
6180 6500 3.245990 GGAAACACAATTTTGCTGCTGTC 59.754 43.478 0.00 0.00 0.00 3.51
6181 6501 2.124011 ACACAATTTTGCTGCTGTCG 57.876 45.000 0.00 0.00 0.00 4.35
6196 6516 1.333308 CTGTCGGCACAAATGTCACAA 59.667 47.619 0.00 0.00 29.82 3.33
6240 6560 4.401925 ACTGGAAAATGCTAGCAACTCTT 58.598 39.130 23.54 8.63 0.00 2.85
6267 6587 9.271921 TCTAAGCCTTGTGATGGACATATATAT 57.728 33.333 0.00 0.00 33.40 0.86
6309 6633 1.476488 CCCCGCCTTGGATGTTTTTAG 59.524 52.381 0.00 0.00 42.00 1.85
6396 6720 0.678048 GATCTGGGTGTGTTGGGCTC 60.678 60.000 0.00 0.00 0.00 4.70
6425 6749 5.804979 TCTTCTTTGCTGCTTGTTTGTTTAC 59.195 36.000 0.00 0.00 0.00 2.01
6479 6813 1.947212 GCTGCATGTGTGAGGTGATGA 60.947 52.381 0.00 0.00 0.00 2.92
6524 6859 1.073284 GGGGTCATGTGTAGTGTGGTT 59.927 52.381 0.00 0.00 0.00 3.67
6549 6884 2.039480 AGACATGGTGAAGCACATGAGT 59.961 45.455 11.17 0.00 35.86 3.41
6701 7074 7.158099 AGGTCTTAATTTTTCATGTGCCTAC 57.842 36.000 0.00 0.00 0.00 3.18
6704 7077 8.088365 GGTCTTAATTTTTCATGTGCCTACTTT 58.912 33.333 0.00 0.00 0.00 2.66
6705 7078 9.129209 GTCTTAATTTTTCATGTGCCTACTTTC 57.871 33.333 0.00 0.00 0.00 2.62
6707 7080 9.474920 CTTAATTTTTCATGTGCCTACTTTCAA 57.525 29.630 0.00 0.00 0.00 2.69
6708 7081 7.951530 AATTTTTCATGTGCCTACTTTCAAG 57.048 32.000 0.00 0.00 0.00 3.02
6709 7082 5.452078 TTTTCATGTGCCTACTTTCAAGG 57.548 39.130 0.00 0.00 37.17 3.61
6716 7089 1.271379 GCCTACTTTCAAGGTGCCTGA 60.271 52.381 0.00 0.00 36.43 3.86
6721 7094 5.011023 CCTACTTTCAAGGTGCCTGAAAAAT 59.989 40.000 13.00 9.11 32.16 1.82
6729 7102 2.743664 GGTGCCTGAAAAATGATTTGGC 59.256 45.455 9.34 9.34 39.33 4.52
6732 7105 2.412770 GCCTGAAAAATGATTTGGCGTG 59.587 45.455 1.88 0.00 0.00 5.34
6735 7108 4.386652 CCTGAAAAATGATTTGGCGTGAAG 59.613 41.667 0.00 0.00 0.00 3.02
6750 7123 3.541711 CGTGAAGTTGATTTTCGTGGAC 58.458 45.455 0.00 0.00 0.00 4.02
6754 7127 4.878971 TGAAGTTGATTTTCGTGGACAAGA 59.121 37.500 0.00 0.00 0.00 3.02
6761 7134 5.358442 TGATTTTCGTGGACAAGAAAAAGGA 59.642 36.000 22.89 11.66 46.18 3.36
6762 7135 4.893424 TTTCGTGGACAAGAAAAAGGAG 57.107 40.909 10.25 0.00 36.23 3.69
6781 7154 4.140599 CGAAGCAGAGCGAGGCCT 62.141 66.667 3.86 3.86 0.00 5.19
6782 7155 2.267324 GAAGCAGAGCGAGGCCTT 59.733 61.111 6.77 0.00 0.00 4.35
6783 7156 2.046507 AAGCAGAGCGAGGCCTTG 60.047 61.111 16.53 16.53 0.00 3.61
6784 7157 4.774503 AGCAGAGCGAGGCCTTGC 62.775 66.667 34.42 34.42 38.22 4.01
6795 7168 2.677875 GCCTTGCCAGAGTTGGGG 60.678 66.667 0.00 0.00 45.16 4.96
6801 7174 4.722700 CCAGAGTTGGGGCGGGTG 62.723 72.222 0.00 0.00 41.05 4.61
6802 7175 4.722700 CAGAGTTGGGGCGGGTGG 62.723 72.222 0.00 0.00 0.00 4.61
6811 7184 4.424711 GGCGGGTGGCAGGATGAA 62.425 66.667 0.00 0.00 46.16 2.57
6812 7185 2.825836 GCGGGTGGCAGGATGAAG 60.826 66.667 0.00 0.00 39.69 3.02
6813 7186 2.989639 CGGGTGGCAGGATGAAGA 59.010 61.111 0.00 0.00 39.69 2.87
6814 7187 1.528824 CGGGTGGCAGGATGAAGAT 59.471 57.895 0.00 0.00 39.69 2.40
6815 7188 0.816825 CGGGTGGCAGGATGAAGATG 60.817 60.000 0.00 0.00 39.69 2.90
6816 7189 0.466922 GGGTGGCAGGATGAAGATGG 60.467 60.000 0.00 0.00 39.69 3.51
6817 7190 1.105759 GGTGGCAGGATGAAGATGGC 61.106 60.000 0.00 0.00 39.69 4.40
6818 7191 0.394762 GTGGCAGGATGAAGATGGCA 60.395 55.000 0.00 0.00 45.91 4.92
6819 7192 0.106868 TGGCAGGATGAAGATGGCAG 60.107 55.000 0.00 0.00 43.62 4.85
6820 7193 0.822532 GGCAGGATGAAGATGGCAGG 60.823 60.000 0.00 0.00 39.69 4.85
6821 7194 0.822532 GCAGGATGAAGATGGCAGGG 60.823 60.000 0.00 0.00 39.69 4.45
6822 7195 0.822532 CAGGATGAAGATGGCAGGGC 60.823 60.000 0.00 0.00 39.69 5.19
6823 7196 1.228228 GGATGAAGATGGCAGGGCA 59.772 57.895 0.00 0.00 0.00 5.36
6824 7197 0.822532 GGATGAAGATGGCAGGGCAG 60.823 60.000 1.13 0.00 0.00 4.85
6825 7198 0.822532 GATGAAGATGGCAGGGCAGG 60.823 60.000 1.13 0.00 0.00 4.85
6826 7199 2.123982 GAAGATGGCAGGGCAGGG 60.124 66.667 1.13 0.00 0.00 4.45
6827 7200 4.453892 AAGATGGCAGGGCAGGGC 62.454 66.667 1.13 0.00 0.00 5.19
6838 7211 4.982701 GCAGGGCAGGGCAGTTGT 62.983 66.667 0.00 0.00 0.00 3.32
6839 7212 2.203538 CAGGGCAGGGCAGTTGTT 60.204 61.111 0.00 0.00 0.00 2.83
6840 7213 2.203538 AGGGCAGGGCAGTTGTTG 60.204 61.111 0.00 0.00 0.00 3.33
6841 7214 3.305516 GGGCAGGGCAGTTGTTGG 61.306 66.667 0.00 0.00 0.00 3.77
6842 7215 2.203480 GGCAGGGCAGTTGTTGGA 60.203 61.111 0.00 0.00 0.00 3.53
6843 7216 1.832167 GGCAGGGCAGTTGTTGGAA 60.832 57.895 0.00 0.00 0.00 3.53
6844 7217 1.187567 GGCAGGGCAGTTGTTGGAAT 61.188 55.000 0.00 0.00 0.00 3.01
6845 7218 0.037975 GCAGGGCAGTTGTTGGAATG 60.038 55.000 0.00 0.00 0.00 2.67
6846 7219 1.619654 CAGGGCAGTTGTTGGAATGA 58.380 50.000 0.00 0.00 0.00 2.57
6847 7220 2.173519 CAGGGCAGTTGTTGGAATGAT 58.826 47.619 0.00 0.00 0.00 2.45
6848 7221 2.165030 CAGGGCAGTTGTTGGAATGATC 59.835 50.000 0.00 0.00 0.00 2.92
6849 7222 1.478105 GGGCAGTTGTTGGAATGATCC 59.522 52.381 0.00 0.00 46.76 3.36
6860 7233 1.401905 GGAATGATCCAACGGTTCAGC 59.598 52.381 0.00 0.00 45.79 4.26
6861 7234 1.401905 GAATGATCCAACGGTTCAGCC 59.598 52.381 0.00 0.00 35.28 4.85
6862 7235 0.327924 ATGATCCAACGGTTCAGCCA 59.672 50.000 0.00 0.00 35.28 4.75
6863 7236 0.109532 TGATCCAACGGTTCAGCCAA 59.890 50.000 0.00 0.00 36.97 4.52
6864 7237 1.243902 GATCCAACGGTTCAGCCAAA 58.756 50.000 0.00 0.00 36.97 3.28
6865 7238 1.818674 GATCCAACGGTTCAGCCAAAT 59.181 47.619 0.00 0.00 36.97 2.32
6866 7239 1.243902 TCCAACGGTTCAGCCAAATC 58.756 50.000 0.00 0.00 36.97 2.17
6867 7240 0.109781 CCAACGGTTCAGCCAAATCG 60.110 55.000 0.17 0.17 36.97 3.34
6868 7241 0.871722 CAACGGTTCAGCCAAATCGA 59.128 50.000 8.19 0.00 36.97 3.59
6869 7242 0.872388 AACGGTTCAGCCAAATCGAC 59.128 50.000 8.19 0.00 36.97 4.20
6870 7243 0.034896 ACGGTTCAGCCAAATCGACT 59.965 50.000 8.19 0.00 36.97 4.18
6871 7244 0.443869 CGGTTCAGCCAAATCGACTG 59.556 55.000 0.00 0.00 36.97 3.51
6872 7245 1.808411 GGTTCAGCCAAATCGACTGA 58.192 50.000 0.00 0.00 38.62 3.41
6873 7246 2.151202 GGTTCAGCCAAATCGACTGAA 58.849 47.619 10.42 10.42 45.56 3.02
6875 7248 1.442769 TCAGCCAAATCGACTGAAGC 58.557 50.000 0.53 0.00 37.49 3.86
6876 7249 0.449388 CAGCCAAATCGACTGAAGCC 59.551 55.000 0.00 0.00 33.10 4.35
6877 7250 1.021390 AGCCAAATCGACTGAAGCCG 61.021 55.000 0.00 0.00 0.00 5.52
6878 7251 1.019278 GCCAAATCGACTGAAGCCGA 61.019 55.000 0.00 0.00 39.25 5.54
6879 7252 1.002366 CCAAATCGACTGAAGCCGAG 58.998 55.000 0.00 0.00 38.25 4.63
6880 7253 1.673033 CCAAATCGACTGAAGCCGAGT 60.673 52.381 0.00 0.00 38.25 4.18
6881 7254 2.069273 CAAATCGACTGAAGCCGAGTT 58.931 47.619 0.00 0.00 42.56 3.01
6882 7255 1.997669 AATCGACTGAAGCCGAGTTC 58.002 50.000 0.00 0.00 38.25 3.01
6883 7256 0.173708 ATCGACTGAAGCCGAGTTCC 59.826 55.000 0.00 0.00 38.25 3.62
6884 7257 0.894184 TCGACTGAAGCCGAGTTCCT 60.894 55.000 0.00 0.00 0.00 3.36
6885 7258 0.456995 CGACTGAAGCCGAGTTCCTC 60.457 60.000 0.00 0.00 0.00 3.71
6886 7259 0.603569 GACTGAAGCCGAGTTCCTCA 59.396 55.000 0.00 0.00 0.00 3.86
6887 7260 0.605589 ACTGAAGCCGAGTTCCTCAG 59.394 55.000 0.00 0.00 0.00 3.35
6888 7261 0.108424 CTGAAGCCGAGTTCCTCAGG 60.108 60.000 0.00 0.00 0.00 3.86
6889 7262 1.448717 GAAGCCGAGTTCCTCAGGC 60.449 63.158 14.87 14.87 44.27 4.85
6890 7263 3.302347 AAGCCGAGTTCCTCAGGCG 62.302 63.158 15.96 0.00 46.45 5.52
6891 7264 3.760035 GCCGAGTTCCTCAGGCGA 61.760 66.667 9.96 0.00 39.09 5.54
6892 7265 2.182030 CCGAGTTCCTCAGGCGAC 59.818 66.667 0.00 0.00 0.00 5.19
6893 7266 2.344203 CCGAGTTCCTCAGGCGACT 61.344 63.158 0.00 0.00 46.44 4.18
6894 7267 1.587054 CGAGTTCCTCAGGCGACTT 59.413 57.895 0.00 0.00 40.21 3.01
6895 7268 0.734253 CGAGTTCCTCAGGCGACTTG 60.734 60.000 0.00 1.33 40.21 3.16
6896 7269 1.004440 AGTTCCTCAGGCGACTTGC 60.004 57.895 0.00 0.00 40.21 4.01
6905 7278 4.521075 GCGACTTGCAGATAGGCA 57.479 55.556 0.00 0.00 45.45 4.75
6906 7279 2.305405 GCGACTTGCAGATAGGCAG 58.695 57.895 0.00 0.00 45.88 4.85
6907 7280 0.460987 GCGACTTGCAGATAGGCAGT 60.461 55.000 0.00 0.00 45.88 4.40
6908 7281 1.565305 CGACTTGCAGATAGGCAGTC 58.435 55.000 2.92 2.92 45.88 3.51
6909 7282 1.135915 CGACTTGCAGATAGGCAGTCT 59.864 52.381 9.97 0.00 45.88 3.24
6910 7283 2.417924 CGACTTGCAGATAGGCAGTCTT 60.418 50.000 9.97 0.00 45.88 3.01
6911 7284 3.604582 GACTTGCAGATAGGCAGTCTTT 58.395 45.455 5.41 0.00 45.88 2.52
6912 7285 4.006319 GACTTGCAGATAGGCAGTCTTTT 58.994 43.478 5.41 0.00 45.88 2.27
6913 7286 5.165961 ACTTGCAGATAGGCAGTCTTTTA 57.834 39.130 0.00 0.00 45.88 1.52
6914 7287 5.560724 ACTTGCAGATAGGCAGTCTTTTAA 58.439 37.500 0.00 0.00 45.88 1.52
6915 7288 6.183347 ACTTGCAGATAGGCAGTCTTTTAAT 58.817 36.000 0.00 0.00 45.88 1.40
6916 7289 6.660949 ACTTGCAGATAGGCAGTCTTTTAATT 59.339 34.615 0.00 0.00 45.88 1.40
6917 7290 7.829211 ACTTGCAGATAGGCAGTCTTTTAATTA 59.171 33.333 0.00 0.00 45.88 1.40
6918 7291 7.553881 TGCAGATAGGCAGTCTTTTAATTAC 57.446 36.000 0.00 0.00 39.25 1.89
6919 7292 7.338710 TGCAGATAGGCAGTCTTTTAATTACT 58.661 34.615 0.00 0.00 39.25 2.24
6920 7293 7.495934 TGCAGATAGGCAGTCTTTTAATTACTC 59.504 37.037 0.00 0.00 39.25 2.59
6921 7294 7.041712 GCAGATAGGCAGTCTTTTAATTACTCC 60.042 40.741 0.00 0.00 0.00 3.85
6922 7295 7.169982 CAGATAGGCAGTCTTTTAATTACTCCG 59.830 40.741 0.00 0.00 0.00 4.63
6923 7296 5.161943 AGGCAGTCTTTTAATTACTCCGT 57.838 39.130 0.00 0.00 0.00 4.69
6924 7297 5.176592 AGGCAGTCTTTTAATTACTCCGTC 58.823 41.667 0.00 0.00 0.00 4.79
6925 7298 5.046520 AGGCAGTCTTTTAATTACTCCGTCT 60.047 40.000 0.00 0.00 0.00 4.18
6926 7299 5.063564 GGCAGTCTTTTAATTACTCCGTCTG 59.936 44.000 0.00 0.00 0.00 3.51
6927 7300 5.638234 GCAGTCTTTTAATTACTCCGTCTGT 59.362 40.000 0.00 0.00 0.00 3.41
6928 7301 6.810182 GCAGTCTTTTAATTACTCCGTCTGTA 59.190 38.462 0.00 0.00 0.00 2.74
6929 7302 7.330208 GCAGTCTTTTAATTACTCCGTCTGTAA 59.670 37.037 0.00 0.00 34.87 2.41
6930 7303 9.199982 CAGTCTTTTAATTACTCCGTCTGTAAA 57.800 33.333 0.00 0.00 34.20 2.01
6931 7304 9.768662 AGTCTTTTAATTACTCCGTCTGTAAAA 57.231 29.630 0.00 0.00 34.20 1.52
6960 7333 7.740519 ATATAATTGACGCTTTTTGCAGTTC 57.259 32.000 0.00 0.00 43.06 3.01
6961 7334 3.715628 ATTGACGCTTTTTGCAGTTCT 57.284 38.095 0.00 0.00 43.06 3.01
6962 7335 3.502191 TTGACGCTTTTTGCAGTTCTT 57.498 38.095 0.00 0.00 43.06 2.52
6963 7336 4.624336 TTGACGCTTTTTGCAGTTCTTA 57.376 36.364 0.00 0.00 43.06 2.10
6964 7337 4.829064 TGACGCTTTTTGCAGTTCTTAT 57.171 36.364 0.00 0.00 43.06 1.73
6965 7338 5.181690 TGACGCTTTTTGCAGTTCTTATT 57.818 34.783 0.00 0.00 43.06 1.40
6966 7339 5.212194 TGACGCTTTTTGCAGTTCTTATTC 58.788 37.500 0.00 0.00 43.06 1.75
6967 7340 5.181690 ACGCTTTTTGCAGTTCTTATTCA 57.818 34.783 0.00 0.00 43.06 2.57
6968 7341 5.587289 ACGCTTTTTGCAGTTCTTATTCAA 58.413 33.333 0.00 0.00 43.06 2.69
6969 7342 5.458779 ACGCTTTTTGCAGTTCTTATTCAAC 59.541 36.000 0.00 0.00 43.06 3.18
6970 7343 5.687285 CGCTTTTTGCAGTTCTTATTCAACT 59.313 36.000 0.00 0.00 43.06 3.16
6978 7351 5.830912 CAGTTCTTATTCAACTGTTTGGCA 58.169 37.500 4.69 0.00 43.92 4.92
6979 7352 6.449698 CAGTTCTTATTCAACTGTTTGGCAT 58.550 36.000 4.69 0.00 43.92 4.40
6980 7353 7.592938 CAGTTCTTATTCAACTGTTTGGCATA 58.407 34.615 4.69 0.00 43.92 3.14
6981 7354 8.246180 CAGTTCTTATTCAACTGTTTGGCATAT 58.754 33.333 4.69 0.00 43.92 1.78
6982 7355 9.461312 AGTTCTTATTCAACTGTTTGGCATATA 57.539 29.630 0.00 0.00 32.65 0.86
6985 7358 9.679661 TCTTATTCAACTGTTTGGCATATAAGA 57.320 29.630 0.00 0.00 33.25 2.10
6986 7359 9.722056 CTTATTCAACTGTTTGGCATATAAGAC 57.278 33.333 0.00 0.00 31.13 3.01
6987 7360 7.944729 ATTCAACTGTTTGGCATATAAGACT 57.055 32.000 0.00 0.00 33.06 3.24
6988 7361 7.759489 TTCAACTGTTTGGCATATAAGACTT 57.241 32.000 0.00 0.00 33.06 3.01
6989 7362 7.144722 TCAACTGTTTGGCATATAAGACTTG 57.855 36.000 0.00 0.00 33.06 3.16
6990 7363 6.939730 TCAACTGTTTGGCATATAAGACTTGA 59.060 34.615 0.00 0.00 33.06 3.02
6991 7364 6.992063 ACTGTTTGGCATATAAGACTTGAG 57.008 37.500 0.00 0.00 0.00 3.02
6992 7365 5.882557 ACTGTTTGGCATATAAGACTTGAGG 59.117 40.000 0.00 0.00 0.00 3.86
6993 7366 4.640201 TGTTTGGCATATAAGACTTGAGGC 59.360 41.667 0.00 0.00 0.00 4.70
6994 7367 4.502105 TTGGCATATAAGACTTGAGGCA 57.498 40.909 9.77 6.92 0.00 4.75
6995 7368 4.077300 TGGCATATAAGACTTGAGGCAG 57.923 45.455 9.77 0.00 0.00 4.85
6996 7369 3.181451 TGGCATATAAGACTTGAGGCAGG 60.181 47.826 9.77 0.00 0.00 4.85
6997 7370 3.181450 GGCATATAAGACTTGAGGCAGGT 60.181 47.826 9.77 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.645058 AGTCCCAATCCAATATTTTAGTGTG 57.355 36.000 0.00 0.00 0.00 3.82
27 28 8.463930 TTGCTAGTCCCAATCCAATATTTTAG 57.536 34.615 0.00 0.00 0.00 1.85
28 29 9.077885 GATTGCTAGTCCCAATCCAATATTTTA 57.922 33.333 9.30 0.00 41.55 1.52
36 37 3.266772 AGTTGATTGCTAGTCCCAATCCA 59.733 43.478 15.01 5.58 44.91 3.41
43 44 3.895232 TGGAGAGTTGATTGCTAGTCC 57.105 47.619 0.00 0.00 0.00 3.85
50 51 5.393461 GGCATTAGGTTTGGAGAGTTGATTG 60.393 44.000 0.00 0.00 0.00 2.67
59 60 1.824852 GTTGGGGCATTAGGTTTGGAG 59.175 52.381 0.00 0.00 0.00 3.86
140 141 0.246635 CGATGAACTTCCCTCGGTGT 59.753 55.000 3.91 0.00 0.00 4.16
156 157 4.045469 GGTGGTGGGTCTACCGAT 57.955 61.111 0.00 0.00 43.87 4.18
203 204 4.389374 CGGCATGGTGGAATTAGAAGTAT 58.611 43.478 0.00 0.00 0.00 2.12
225 226 1.028868 GGAGGAGGTCACAAGCATGC 61.029 60.000 10.51 10.51 0.00 4.06
227 228 1.004044 CAAGGAGGAGGTCACAAGCAT 59.996 52.381 0.00 0.00 0.00 3.79
228 229 0.397941 CAAGGAGGAGGTCACAAGCA 59.602 55.000 0.00 0.00 0.00 3.91
242 243 2.617788 CCGTCCCATCACAAATCAAGGA 60.618 50.000 0.00 0.00 0.00 3.36
249 250 1.628340 ACATCTCCGTCCCATCACAAA 59.372 47.619 0.00 0.00 0.00 2.83
253 254 0.541392 CCAACATCTCCGTCCCATCA 59.459 55.000 0.00 0.00 0.00 3.07
296 297 4.259046 GGCGAATTTAAAAGTAGCGAAACG 59.741 41.667 0.00 0.00 0.00 3.60
324 325 6.518537 GCACATATTTCGTTATCCTACTCCCT 60.519 42.308 0.00 0.00 0.00 4.20
343 344 1.904287 AACGCCCAAAAGAGCACATA 58.096 45.000 0.00 0.00 0.00 2.29
345 346 1.234821 CTAACGCCCAAAAGAGCACA 58.765 50.000 0.00 0.00 0.00 4.57
356 357 4.581093 GCCCATCCCCTAACGCCC 62.581 72.222 0.00 0.00 0.00 6.13
377 382 1.207089 CTACTCGGGACAATCAAGGCA 59.793 52.381 0.00 0.00 0.00 4.75
389 394 0.389391 ACATCGCCAATCTACTCGGG 59.611 55.000 0.00 0.00 0.00 5.14
412 417 1.585006 GTCTTCGACAAGGAGCGGA 59.415 57.895 0.00 0.00 32.09 5.54
448 453 3.418913 CGCGCGTGGTGGATTTGA 61.419 61.111 24.19 0.00 0.00 2.69
568 573 8.391075 TGTAGAAGTAGCAAAACATAGCTTTT 57.609 30.769 0.00 0.00 42.05 2.27
571 576 6.763610 GGATGTAGAAGTAGCAAAACATAGCT 59.236 38.462 0.00 0.00 44.55 3.32
592 597 1.973281 GCCTGTGGTGTGGTGGATG 60.973 63.158 0.00 0.00 0.00 3.51
646 651 2.494151 GAAAGGTCCCCCTCCTCCCT 62.494 65.000 0.00 0.00 41.56 4.20
650 655 1.306226 CGAGAAAGGTCCCCCTCCT 60.306 63.158 0.00 0.00 41.56 3.69
681 686 5.464030 ACTTTTGCTCTACCTTCGAGTTA 57.536 39.130 0.00 0.00 0.00 2.24
718 723 7.490725 TCCAATTTGTATTAATTGTTGCGGATG 59.509 33.333 0.00 0.00 41.67 3.51
795 804 9.705103 TTTTCCAAATTAAGGATGAGATGATCT 57.295 29.630 0.00 0.00 34.56 2.75
796 805 9.741647 GTTTTCCAAATTAAGGATGAGATGATC 57.258 33.333 0.79 0.00 34.56 2.92
797 806 8.699130 GGTTTTCCAAATTAAGGATGAGATGAT 58.301 33.333 0.79 0.00 40.31 2.45
798 807 7.895429 AGGTTTTCCAAATTAAGGATGAGATGA 59.105 33.333 0.79 0.00 43.73 2.92
799 808 8.071177 AGGTTTTCCAAATTAAGGATGAGATG 57.929 34.615 0.79 0.00 43.73 2.90
836 845 8.372877 TGATTAATTTGGGAGCCAGAATTTAA 57.627 30.769 0.00 3.79 33.81 1.52
840 849 7.015584 GGTAATGATTAATTTGGGAGCCAGAAT 59.984 37.037 0.00 0.00 33.81 2.40
870 879 4.023193 AGTTGCTTGTAGAAATGAAACGGG 60.023 41.667 0.00 0.00 0.00 5.28
962 975 4.772231 CGGAGGGGAGGGAACGGA 62.772 72.222 0.00 0.00 0.00 4.69
966 979 4.798682 GGAGCGGAGGGGAGGGAA 62.799 72.222 0.00 0.00 0.00 3.97
1003 1016 3.473166 CGACGACGACGAGGACGA 61.473 66.667 15.32 0.00 41.06 4.20
1129 1142 2.437895 GCGTAGGGTTCAAGGGGC 60.438 66.667 0.00 0.00 0.00 5.80
1191 1204 1.730902 CGACACAGAGTGAGCACCG 60.731 63.158 3.88 0.00 36.96 4.94
1425 1438 0.102300 CGTCGCATCCTACATCACCA 59.898 55.000 0.00 0.00 0.00 4.17
1437 1450 0.534203 ACAAGACCAAACCGTCGCAT 60.534 50.000 0.00 0.00 37.85 4.73
1485 1499 5.766670 TCATAGCAATCATCAGGCCTAAAAG 59.233 40.000 3.98 0.00 0.00 2.27
1504 1519 4.084849 GGTGAAACGATGCGAATCTCATAG 60.085 45.833 0.96 0.00 38.12 2.23
1506 1521 2.609459 GGTGAAACGATGCGAATCTCAT 59.391 45.455 0.96 0.00 38.12 2.90
1509 1524 1.066143 AGGGTGAAACGATGCGAATCT 60.066 47.619 0.96 0.00 38.12 2.40
1515 1530 1.644786 CGGGAAGGGTGAAACGATGC 61.645 60.000 0.00 0.00 38.12 3.91
1572 1587 7.557719 ACTGGATGCTTGCATAGTAAAAACTAT 59.442 33.333 8.17 0.00 33.53 2.12
1652 1667 5.015284 ACAATATCCTAAATTAGCCCCCTCC 59.985 44.000 0.00 0.00 0.00 4.30
1700 1715 5.418840 ACAAGGGAAACTATAACATTGCCAG 59.581 40.000 0.00 0.00 37.05 4.85
1762 1777 3.047796 GCAGACAACAAAATCAGCACTG 58.952 45.455 0.00 0.00 0.00 3.66
1814 1829 1.276421 AGGGGAGTCAGTGAATTGTCG 59.724 52.381 0.00 0.00 0.00 4.35
1936 1975 6.705825 GCCATTCAATTATGGTCCCATTAAAC 59.294 38.462 3.76 0.00 45.65 2.01
1992 2031 0.035725 CACTGGAGAAGCTCATGGCA 60.036 55.000 8.58 0.00 44.79 4.92
1993 2032 0.251354 TCACTGGAGAAGCTCATGGC 59.749 55.000 0.00 0.00 42.19 4.40
2015 2054 0.250858 TGGTCCAGGACTTGTGCATG 60.251 55.000 19.57 0.00 32.47 4.06
2021 2060 0.537188 ACGCTATGGTCCAGGACTTG 59.463 55.000 19.57 8.17 32.47 3.16
2032 2071 0.249911 GGCCCTTCTACACGCTATGG 60.250 60.000 0.00 0.00 0.00 2.74
2313 2354 7.275183 ACATGCTAACATATTGCTACTGAAGA 58.725 34.615 0.00 0.00 33.67 2.87
2505 2546 8.440771 ACACCTTATATAAAGGAATGGAGGAAG 58.559 37.037 10.67 3.85 39.81 3.46
2506 2547 8.344939 ACACCTTATATAAAGGAATGGAGGAA 57.655 34.615 10.67 0.00 39.81 3.36
2507 2548 7.947782 ACACCTTATATAAAGGAATGGAGGA 57.052 36.000 10.67 0.00 39.81 3.71
2539 2580 9.753674 ACCTTACATTCTGGAATCTTATCAAAA 57.246 29.630 0.00 0.00 0.00 2.44
2540 2581 9.177608 CACCTTACATTCTGGAATCTTATCAAA 57.822 33.333 0.00 0.00 0.00 2.69
2541 2582 7.283127 GCACCTTACATTCTGGAATCTTATCAA 59.717 37.037 0.00 0.00 0.00 2.57
2542 2583 6.767902 GCACCTTACATTCTGGAATCTTATCA 59.232 38.462 0.00 0.00 0.00 2.15
2543 2584 6.767902 TGCACCTTACATTCTGGAATCTTATC 59.232 38.462 0.00 0.00 0.00 1.75
2544 2585 6.662755 TGCACCTTACATTCTGGAATCTTAT 58.337 36.000 0.00 0.00 0.00 1.73
2545 2586 6.061022 TGCACCTTACATTCTGGAATCTTA 57.939 37.500 0.00 0.00 0.00 2.10
2546 2587 4.922206 TGCACCTTACATTCTGGAATCTT 58.078 39.130 0.00 0.00 0.00 2.40
2547 2588 4.574674 TGCACCTTACATTCTGGAATCT 57.425 40.909 0.00 0.00 0.00 2.40
2548 2589 5.841957 AATGCACCTTACATTCTGGAATC 57.158 39.130 0.00 0.00 32.28 2.52
2549 2590 5.954150 AGAAATGCACCTTACATTCTGGAAT 59.046 36.000 0.00 0.00 36.74 3.01
2550 2591 5.324409 AGAAATGCACCTTACATTCTGGAA 58.676 37.500 0.00 0.00 36.74 3.53
2551 2592 4.922206 AGAAATGCACCTTACATTCTGGA 58.078 39.130 0.00 0.00 36.74 3.86
2552 2593 5.649782 AAGAAATGCACCTTACATTCTGG 57.350 39.130 0.00 0.00 36.74 3.86
2557 2598 9.646522 AGGAATTATAAGAAATGCACCTTACAT 57.353 29.630 7.06 2.08 0.00 2.29
2558 2599 9.120538 GAGGAATTATAAGAAATGCACCTTACA 57.879 33.333 7.06 0.00 0.00 2.41
2559 2600 9.120538 TGAGGAATTATAAGAAATGCACCTTAC 57.879 33.333 7.06 0.00 0.00 2.34
2560 2601 9.866655 ATGAGGAATTATAAGAAATGCACCTTA 57.133 29.630 0.00 0.00 0.00 2.69
2561 2602 8.773033 ATGAGGAATTATAAGAAATGCACCTT 57.227 30.769 0.00 0.00 0.00 3.50
2562 2603 9.866655 TTATGAGGAATTATAAGAAATGCACCT 57.133 29.630 0.00 0.00 0.00 4.00
2575 2616 9.301897 GCTAACAAGGGAATTATGAGGAATTAT 57.698 33.333 0.00 0.00 0.00 1.28
2576 2617 7.724061 GGCTAACAAGGGAATTATGAGGAATTA 59.276 37.037 0.00 0.00 0.00 1.40
2577 2618 6.551227 GGCTAACAAGGGAATTATGAGGAATT 59.449 38.462 0.00 0.00 0.00 2.17
2578 2619 6.071320 GGCTAACAAGGGAATTATGAGGAAT 58.929 40.000 0.00 0.00 0.00 3.01
2579 2620 5.445964 GGCTAACAAGGGAATTATGAGGAA 58.554 41.667 0.00 0.00 0.00 3.36
2580 2621 4.141251 GGGCTAACAAGGGAATTATGAGGA 60.141 45.833 0.00 0.00 0.00 3.71
2581 2622 4.141158 AGGGCTAACAAGGGAATTATGAGG 60.141 45.833 0.00 0.00 0.00 3.86
2582 2623 5.053978 AGGGCTAACAAGGGAATTATGAG 57.946 43.478 0.00 0.00 0.00 2.90
2583 2624 4.141251 GGAGGGCTAACAAGGGAATTATGA 60.141 45.833 0.00 0.00 0.00 2.15
2584 2625 4.145052 GGAGGGCTAACAAGGGAATTATG 58.855 47.826 0.00 0.00 0.00 1.90
2585 2626 3.791545 TGGAGGGCTAACAAGGGAATTAT 59.208 43.478 0.00 0.00 0.00 1.28
2586 2627 3.194620 TGGAGGGCTAACAAGGGAATTA 58.805 45.455 0.00 0.00 0.00 1.40
2587 2628 2.000048 TGGAGGGCTAACAAGGGAATT 59.000 47.619 0.00 0.00 0.00 2.17
2588 2629 1.566231 CTGGAGGGCTAACAAGGGAAT 59.434 52.381 0.00 0.00 0.00 3.01
2589 2630 0.991920 CTGGAGGGCTAACAAGGGAA 59.008 55.000 0.00 0.00 0.00 3.97
2590 2631 0.118346 TCTGGAGGGCTAACAAGGGA 59.882 55.000 0.00 0.00 0.00 4.20
2591 2632 0.991920 TTCTGGAGGGCTAACAAGGG 59.008 55.000 0.00 0.00 0.00 3.95
2592 2633 2.879103 TTTCTGGAGGGCTAACAAGG 57.121 50.000 0.00 0.00 0.00 3.61
2610 2651 6.688073 TCAGGACAGAGATACTTCCTTTTT 57.312 37.500 0.00 0.00 35.53 1.94
2611 2652 6.882768 ATCAGGACAGAGATACTTCCTTTT 57.117 37.500 0.00 0.00 35.53 2.27
2612 2653 6.214412 ACAATCAGGACAGAGATACTTCCTTT 59.786 38.462 0.00 0.00 35.53 3.11
2613 2654 5.723887 ACAATCAGGACAGAGATACTTCCTT 59.276 40.000 0.00 0.00 35.53 3.36
2614 2655 5.276440 ACAATCAGGACAGAGATACTTCCT 58.724 41.667 0.00 0.00 36.95 3.36
2615 2656 5.362430 AGACAATCAGGACAGAGATACTTCC 59.638 44.000 0.00 0.00 0.00 3.46
2616 2657 6.127479 ACAGACAATCAGGACAGAGATACTTC 60.127 42.308 0.00 0.00 0.00 3.01
2617 2658 5.719085 ACAGACAATCAGGACAGAGATACTT 59.281 40.000 0.00 0.00 0.00 2.24
2618 2659 5.268387 ACAGACAATCAGGACAGAGATACT 58.732 41.667 0.00 0.00 0.00 2.12
2619 2660 5.590530 ACAGACAATCAGGACAGAGATAC 57.409 43.478 0.00 0.00 0.00 2.24
2620 2661 7.293828 AGATACAGACAATCAGGACAGAGATA 58.706 38.462 0.00 0.00 0.00 1.98
2621 2662 6.135454 AGATACAGACAATCAGGACAGAGAT 58.865 40.000 0.00 0.00 0.00 2.75
2622 2663 5.514169 AGATACAGACAATCAGGACAGAGA 58.486 41.667 0.00 0.00 0.00 3.10
2623 2664 5.593909 AGAGATACAGACAATCAGGACAGAG 59.406 44.000 0.00 0.00 0.00 3.35
2624 2665 5.514169 AGAGATACAGACAATCAGGACAGA 58.486 41.667 0.00 0.00 0.00 3.41
2625 2666 5.221224 GGAGAGATACAGACAATCAGGACAG 60.221 48.000 0.00 0.00 0.00 3.51
2626 2667 4.646945 GGAGAGATACAGACAATCAGGACA 59.353 45.833 0.00 0.00 0.00 4.02
2627 2668 4.892934 AGGAGAGATACAGACAATCAGGAC 59.107 45.833 0.00 0.00 0.00 3.85
2628 2669 5.136068 AGGAGAGATACAGACAATCAGGA 57.864 43.478 0.00 0.00 0.00 3.86
2629 2670 5.128499 ACAAGGAGAGATACAGACAATCAGG 59.872 44.000 0.00 0.00 0.00 3.86
2630 2671 6.041511 CACAAGGAGAGATACAGACAATCAG 58.958 44.000 0.00 0.00 0.00 2.90
2631 2672 5.105187 CCACAAGGAGAGATACAGACAATCA 60.105 44.000 0.00 0.00 36.89 2.57
2632 2673 5.355596 CCACAAGGAGAGATACAGACAATC 58.644 45.833 0.00 0.00 36.89 2.67
2633 2674 4.383552 GCCACAAGGAGAGATACAGACAAT 60.384 45.833 0.00 0.00 36.89 2.71
2634 2675 3.055819 GCCACAAGGAGAGATACAGACAA 60.056 47.826 0.00 0.00 36.89 3.18
2635 2676 2.497675 GCCACAAGGAGAGATACAGACA 59.502 50.000 0.00 0.00 36.89 3.41
2636 2677 2.497675 TGCCACAAGGAGAGATACAGAC 59.502 50.000 0.00 0.00 36.89 3.51
2637 2678 2.820178 TGCCACAAGGAGAGATACAGA 58.180 47.619 0.00 0.00 36.89 3.41
2638 2679 3.616956 TTGCCACAAGGAGAGATACAG 57.383 47.619 0.00 0.00 36.89 2.74
2639 2680 4.326826 CTTTTGCCACAAGGAGAGATACA 58.673 43.478 0.00 0.00 36.89 2.29
2640 2681 3.691609 CCTTTTGCCACAAGGAGAGATAC 59.308 47.826 3.43 0.00 43.32 2.24
2641 2682 3.587061 TCCTTTTGCCACAAGGAGAGATA 59.413 43.478 8.26 0.00 44.17 1.98
2642 2683 2.376518 TCCTTTTGCCACAAGGAGAGAT 59.623 45.455 8.26 0.00 44.17 2.75
2643 2684 1.774254 TCCTTTTGCCACAAGGAGAGA 59.226 47.619 8.26 0.00 44.17 3.10
2644 2685 2.276732 TCCTTTTGCCACAAGGAGAG 57.723 50.000 8.26 0.00 44.17 3.20
2647 2688 3.806949 ATACTCCTTTTGCCACAAGGA 57.193 42.857 11.66 11.66 46.39 3.36
2648 2689 5.418840 ACAATATACTCCTTTTGCCACAAGG 59.581 40.000 3.10 3.10 42.16 3.61
2649 2690 6.515272 ACAATATACTCCTTTTGCCACAAG 57.485 37.500 0.00 0.00 0.00 3.16
2650 2691 8.588290 ATTACAATATACTCCTTTTGCCACAA 57.412 30.769 0.00 0.00 0.00 3.33
2651 2692 9.860650 ATATTACAATATACTCCTTTTGCCACA 57.139 29.630 0.00 0.00 30.07 4.17
2774 2821 2.670939 AGCCTGGGCCTTAAATCAATC 58.329 47.619 4.53 0.00 43.17 2.67
2858 2905 4.968971 TTAGCATTTAGGCTAGGGGTAC 57.031 45.455 0.00 0.00 46.25 3.34
2898 2945 9.930693 CTCCAGTTAAGGGATATAATTACAGTC 57.069 37.037 0.00 0.00 33.04 3.51
3190 3238 6.064846 ACAAGCAAAAGTATCTGACAACAG 57.935 37.500 0.00 0.00 44.66 3.16
3258 3306 8.910351 AGTCCAATACCTTTGATATTAGAAGC 57.090 34.615 0.00 0.00 0.00 3.86
3294 3504 6.151648 TCTCCATTCTAGAGCCACAAAATTTG 59.848 38.462 3.89 3.89 0.00 2.32
3451 3664 4.976540 AGGTCTTACTAAAGCACTGGTT 57.023 40.909 0.00 0.00 32.36 3.67
3879 4099 1.134487 CGCCACGCAAAGTACATGG 59.866 57.895 0.00 0.00 0.00 3.66
3881 4101 1.448985 AATCGCCACGCAAAGTACAT 58.551 45.000 0.00 0.00 0.00 2.29
3892 4114 1.717194 TTCTGACCGTAAATCGCCAC 58.283 50.000 0.00 0.00 38.35 5.01
3896 4118 5.585500 TTTGACTTTCTGACCGTAAATCG 57.415 39.130 0.00 0.00 39.52 3.34
3926 4148 2.505866 GGCGACACTTAAAAAGATGCG 58.494 47.619 0.00 0.00 0.00 4.73
3943 4165 3.109619 ACAACAACAAAATACAACGGCG 58.890 40.909 4.80 4.80 0.00 6.46
4013 4237 3.788227 AGAACAAACCCATACAGCAGA 57.212 42.857 0.00 0.00 0.00 4.26
4049 4273 0.321919 TGAAGCACAGTGATCCTGCC 60.322 55.000 4.15 3.77 45.68 4.85
4145 4369 5.837979 AGATATAAGACAGTGGAGCACTCAT 59.162 40.000 0.00 0.00 43.43 2.90
4528 4764 5.703130 AGCTCATCCAGAAAGTCACTTTAAC 59.297 40.000 1.74 0.00 33.49 2.01
4599 4835 6.735694 GCACAGTTGTCAACCACTCATATTTT 60.736 38.462 12.17 0.00 0.00 1.82
4635 4941 1.200716 CCCACTGCACACTATTTGCTG 59.799 52.381 0.00 0.00 42.77 4.41
4764 5073 6.129874 GGAGTAAAAAGGGGAATGCTTCTAT 58.870 40.000 0.00 0.00 0.00 1.98
4765 5074 5.014755 TGGAGTAAAAAGGGGAATGCTTCTA 59.985 40.000 0.00 0.00 0.00 2.10
4769 5078 3.431415 GTGGAGTAAAAAGGGGAATGCT 58.569 45.455 0.00 0.00 0.00 3.79
4770 5079 2.496070 GGTGGAGTAAAAAGGGGAATGC 59.504 50.000 0.00 0.00 0.00 3.56
4822 5134 8.411318 CTGCAATACAGGTTTATCCATTTTTC 57.589 34.615 0.00 0.00 43.19 2.29
4919 5231 7.230510 ACAAGTCAAAAGTATGGATAGCACAAA 59.769 33.333 0.00 0.00 0.00 2.83
4951 5263 4.332819 GGTACACAAGCCATAGTAGCAAAG 59.667 45.833 0.00 0.00 35.63 2.77
4952 5264 4.258543 GGTACACAAGCCATAGTAGCAAA 58.741 43.478 0.00 0.00 35.63 3.68
5156 5468 7.869429 GGAAGATCATTGTTGAACTTGTTGATT 59.131 33.333 3.61 0.00 42.90 2.57
5340 5652 7.203255 ACTACTCATTCTAAAACTTTGGCAC 57.797 36.000 0.00 0.00 0.00 5.01
5416 5728 8.573885 CCATCAAGCATAATGTACTCAATGAAT 58.426 33.333 0.00 0.00 0.00 2.57
5700 6018 2.979813 GTTTCAACATGCGACCATCAAC 59.020 45.455 0.00 0.00 0.00 3.18
5734 6052 4.160329 ACCTGTCAGTGATTAGGAGAACA 58.840 43.478 24.99 4.76 34.42 3.18
5735 6053 4.810191 ACCTGTCAGTGATTAGGAGAAC 57.190 45.455 24.99 0.51 34.42 3.01
5976 6296 2.954989 TCAGATCCTGAGGTCTTCGATG 59.045 50.000 0.00 0.00 35.39 3.84
5985 6305 1.138661 GGCAGAAGTCAGATCCTGAGG 59.861 57.143 0.00 0.00 41.46 3.86
5999 6319 2.598394 GCAACAGGCAGGGCAGAA 60.598 61.111 0.00 0.00 43.97 3.02
6007 6327 4.911518 CGATGATATATCGAGCAACAGGCA 60.912 45.833 8.19 0.00 43.59 4.75
6029 6349 6.578020 TTGGTAATATAACTCGACTTTGCG 57.422 37.500 0.00 0.00 0.00 4.85
6030 6350 8.138365 TGATTGGTAATATAACTCGACTTTGC 57.862 34.615 0.00 0.00 0.00 3.68
6031 6351 8.276325 GCTGATTGGTAATATAACTCGACTTTG 58.724 37.037 0.00 0.00 0.00 2.77
6040 6360 7.385205 AGTCATGACGCTGATTGGTAATATAAC 59.615 37.037 19.85 0.00 36.20 1.89
6087 6407 4.320608 TTTAAAGCTTGCTTGGGAACTG 57.679 40.909 8.73 0.00 0.00 3.16
6113 6433 1.595093 CGATGGCCAAAACCAGGTCC 61.595 60.000 10.96 0.00 44.71 4.46
6136 6456 1.578583 AGTTCGAAGGGAAACACACG 58.421 50.000 0.00 0.00 36.14 4.49
6151 6471 4.875536 AGCAAAATTGTGTTTCCCAAGTTC 59.124 37.500 0.00 0.00 29.73 3.01
6157 6477 2.545106 CAGCAGCAAAATTGTGTTTCCC 59.455 45.455 0.00 0.00 0.00 3.97
6160 6480 2.859538 CGACAGCAGCAAAATTGTGTTT 59.140 40.909 0.00 0.00 0.00 2.83
6180 6500 1.066908 AGGTTTGTGACATTTGTGCCG 59.933 47.619 0.00 0.00 0.00 5.69
6181 6501 2.472816 CAGGTTTGTGACATTTGTGCC 58.527 47.619 0.00 0.00 0.00 5.01
6196 6516 1.480545 GCTGTCCACAAAAACCAGGTT 59.519 47.619 0.00 0.00 0.00 3.50
6212 6532 2.229784 GCTAGCATTTTCCAGTTGCTGT 59.770 45.455 10.63 0.00 45.76 4.40
6240 6560 4.574674 ATGTCCATCACAAGGCTTAGAA 57.425 40.909 0.00 0.00 38.97 2.10
6309 6633 0.716108 CATCCAACTTCGACACGAGC 59.284 55.000 0.00 0.00 37.14 5.03
6396 6720 1.136029 CAAGCAGCAAAGAAGAGCTCG 60.136 52.381 8.37 0.00 39.50 5.03
6425 6749 1.134729 AGCAACCAGGCAACAAACAAG 60.135 47.619 0.00 0.00 41.41 3.16
6479 6813 0.892755 CAATTGCCAGCTCCACACAT 59.107 50.000 0.00 0.00 0.00 3.21
6507 6842 2.217750 TGCAACCACACTACACATGAC 58.782 47.619 0.00 0.00 0.00 3.06
6524 6859 0.953727 GTGCTTCACCATGTCTTGCA 59.046 50.000 0.00 0.00 0.00 4.08
6549 6884 4.856487 CAGAAAAGAAAACGAGCAACACAA 59.144 37.500 0.00 0.00 0.00 3.33
6657 7000 6.008696 ACCTTCCAATATATTTTGGGACGA 57.991 37.500 20.70 3.22 45.21 4.20
6701 7074 4.947645 TCATTTTTCAGGCACCTTGAAAG 58.052 39.130 11.50 4.82 33.79 2.62
6704 7077 5.299148 CAAATCATTTTTCAGGCACCTTGA 58.701 37.500 0.00 0.00 0.00 3.02
6705 7078 4.453136 CCAAATCATTTTTCAGGCACCTTG 59.547 41.667 0.00 0.00 0.00 3.61
6707 7080 3.557686 GCCAAATCATTTTTCAGGCACCT 60.558 43.478 4.65 0.00 40.29 4.00
6708 7081 2.743664 GCCAAATCATTTTTCAGGCACC 59.256 45.455 4.65 0.00 40.29 5.01
6709 7082 2.412770 CGCCAAATCATTTTTCAGGCAC 59.587 45.455 9.29 0.00 40.58 5.01
6716 7089 5.355596 TCAACTTCACGCCAAATCATTTTT 58.644 33.333 0.00 0.00 0.00 1.94
6721 7094 4.582701 AAATCAACTTCACGCCAAATCA 57.417 36.364 0.00 0.00 0.00 2.57
6729 7102 3.001838 TGTCCACGAAAATCAACTTCACG 59.998 43.478 0.00 0.00 0.00 4.35
6732 7105 5.418310 TCTTGTCCACGAAAATCAACTTC 57.582 39.130 0.00 0.00 0.00 3.01
6735 7108 6.019881 CCTTTTTCTTGTCCACGAAAATCAAC 60.020 38.462 11.08 0.00 38.03 3.18
6750 7123 1.608590 TGCTTCGCCTCCTTTTTCTTG 59.391 47.619 0.00 0.00 0.00 3.02
6754 7127 1.528129 CTCTGCTTCGCCTCCTTTTT 58.472 50.000 0.00 0.00 0.00 1.94
6761 7134 4.140599 CCTCGCTCTGCTTCGCCT 62.141 66.667 0.00 0.00 0.00 5.52
6778 7151 2.677875 CCCCAACTCTGGCAAGGC 60.678 66.667 0.00 0.00 41.99 4.35
6784 7157 4.722700 CACCCGCCCCAACTCTGG 62.723 72.222 0.00 0.00 43.10 3.86
6785 7158 4.722700 CCACCCGCCCCAACTCTG 62.723 72.222 0.00 0.00 0.00 3.35
6794 7167 4.424711 TTCATCCTGCCACCCGCC 62.425 66.667 0.00 0.00 36.24 6.13
6795 7168 2.615227 ATCTTCATCCTGCCACCCGC 62.615 60.000 0.00 0.00 38.31 6.13
6796 7169 0.816825 CATCTTCATCCTGCCACCCG 60.817 60.000 0.00 0.00 0.00 5.28
6797 7170 0.466922 CCATCTTCATCCTGCCACCC 60.467 60.000 0.00 0.00 0.00 4.61
6798 7171 1.105759 GCCATCTTCATCCTGCCACC 61.106 60.000 0.00 0.00 0.00 4.61
6799 7172 0.394762 TGCCATCTTCATCCTGCCAC 60.395 55.000 0.00 0.00 0.00 5.01
6800 7173 0.106868 CTGCCATCTTCATCCTGCCA 60.107 55.000 0.00 0.00 0.00 4.92
6801 7174 0.822532 CCTGCCATCTTCATCCTGCC 60.823 60.000 0.00 0.00 0.00 4.85
6802 7175 0.822532 CCCTGCCATCTTCATCCTGC 60.823 60.000 0.00 0.00 0.00 4.85
6803 7176 0.822532 GCCCTGCCATCTTCATCCTG 60.823 60.000 0.00 0.00 0.00 3.86
6804 7177 1.284111 TGCCCTGCCATCTTCATCCT 61.284 55.000 0.00 0.00 0.00 3.24
6805 7178 0.822532 CTGCCCTGCCATCTTCATCC 60.823 60.000 0.00 0.00 0.00 3.51
6806 7179 0.822532 CCTGCCCTGCCATCTTCATC 60.823 60.000 0.00 0.00 0.00 2.92
6807 7180 1.229359 CCTGCCCTGCCATCTTCAT 59.771 57.895 0.00 0.00 0.00 2.57
6808 7181 2.679092 CCTGCCCTGCCATCTTCA 59.321 61.111 0.00 0.00 0.00 3.02
6809 7182 2.123982 CCCTGCCCTGCCATCTTC 60.124 66.667 0.00 0.00 0.00 2.87
6810 7183 4.453892 GCCCTGCCCTGCCATCTT 62.454 66.667 0.00 0.00 0.00 2.40
6821 7194 4.982701 ACAACTGCCCTGCCCTGC 62.983 66.667 0.00 0.00 0.00 4.85
6822 7195 2.203538 AACAACTGCCCTGCCCTG 60.204 61.111 0.00 0.00 0.00 4.45
6823 7196 2.203538 CAACAACTGCCCTGCCCT 60.204 61.111 0.00 0.00 0.00 5.19
6824 7197 3.305516 CCAACAACTGCCCTGCCC 61.306 66.667 0.00 0.00 0.00 5.36
6825 7198 1.187567 ATTCCAACAACTGCCCTGCC 61.188 55.000 0.00 0.00 0.00 4.85
6826 7199 0.037975 CATTCCAACAACTGCCCTGC 60.038 55.000 0.00 0.00 0.00 4.85
6827 7200 1.619654 TCATTCCAACAACTGCCCTG 58.380 50.000 0.00 0.00 0.00 4.45
6828 7201 2.450476 GATCATTCCAACAACTGCCCT 58.550 47.619 0.00 0.00 0.00 5.19
6829 7202 1.478105 GGATCATTCCAACAACTGCCC 59.522 52.381 0.00 0.00 42.12 5.36
6830 7203 2.947448 GGATCATTCCAACAACTGCC 57.053 50.000 0.00 0.00 42.12 4.85
6840 7213 1.401905 GCTGAACCGTTGGATCATTCC 59.598 52.381 0.00 0.00 42.94 3.01
6841 7214 1.401905 GGCTGAACCGTTGGATCATTC 59.598 52.381 0.00 0.00 34.12 2.67
6842 7215 1.271871 TGGCTGAACCGTTGGATCATT 60.272 47.619 0.00 0.00 43.94 2.57
6843 7216 0.327924 TGGCTGAACCGTTGGATCAT 59.672 50.000 0.00 0.00 43.94 2.45
6844 7217 0.109532 TTGGCTGAACCGTTGGATCA 59.890 50.000 0.00 0.00 43.94 2.92
6845 7218 1.243902 TTTGGCTGAACCGTTGGATC 58.756 50.000 0.00 0.00 43.94 3.36
6846 7219 1.818674 GATTTGGCTGAACCGTTGGAT 59.181 47.619 0.00 0.00 43.94 3.41
6847 7220 1.243902 GATTTGGCTGAACCGTTGGA 58.756 50.000 0.00 0.00 43.94 3.53
6848 7221 0.109781 CGATTTGGCTGAACCGTTGG 60.110 55.000 0.00 0.00 43.94 3.77
6849 7222 0.871722 TCGATTTGGCTGAACCGTTG 59.128 50.000 0.00 0.00 43.94 4.10
6850 7223 0.872388 GTCGATTTGGCTGAACCGTT 59.128 50.000 0.00 0.00 43.94 4.44
6851 7224 0.034896 AGTCGATTTGGCTGAACCGT 59.965 50.000 0.00 0.00 43.94 4.83
6852 7225 0.443869 CAGTCGATTTGGCTGAACCG 59.556 55.000 0.00 0.00 43.94 4.44
6853 7226 1.808411 TCAGTCGATTTGGCTGAACC 58.192 50.000 5.72 0.00 36.46 3.62
6854 7227 2.413371 GCTTCAGTCGATTTGGCTGAAC 60.413 50.000 15.49 9.87 42.24 3.18
6855 7228 1.806542 GCTTCAGTCGATTTGGCTGAA 59.193 47.619 17.82 17.82 44.08 3.02
6856 7229 1.442769 GCTTCAGTCGATTTGGCTGA 58.557 50.000 4.01 4.01 37.47 4.26
6857 7230 0.449388 GGCTTCAGTCGATTTGGCTG 59.551 55.000 0.00 0.00 0.00 4.85
6858 7231 2.859992 GGCTTCAGTCGATTTGGCT 58.140 52.632 0.00 0.00 0.00 4.75
6866 7239 1.587054 AGGAACTCGGCTTCAGTCG 59.413 57.895 0.00 0.00 45.75 4.18
6877 7250 1.016653 GCAAGTCGCCTGAGGAACTC 61.017 60.000 0.65 0.00 46.37 3.01
6878 7251 1.004440 GCAAGTCGCCTGAGGAACT 60.004 57.895 0.65 1.22 36.04 3.01
6879 7252 1.294659 CTGCAAGTCGCCTGAGGAAC 61.295 60.000 0.65 0.00 41.33 3.62
6880 7253 1.004560 CTGCAAGTCGCCTGAGGAA 60.005 57.895 0.65 0.00 41.33 3.36
6881 7254 1.260538 ATCTGCAAGTCGCCTGAGGA 61.261 55.000 0.65 0.00 41.33 3.71
6882 7255 0.461548 TATCTGCAAGTCGCCTGAGG 59.538 55.000 0.00 0.00 41.33 3.86
6883 7256 1.537776 CCTATCTGCAAGTCGCCTGAG 60.538 57.143 0.00 0.00 41.33 3.35
6884 7257 0.461548 CCTATCTGCAAGTCGCCTGA 59.538 55.000 0.00 0.00 41.33 3.86
6885 7258 1.156645 GCCTATCTGCAAGTCGCCTG 61.157 60.000 0.00 0.00 41.33 4.85
6886 7259 1.144936 GCCTATCTGCAAGTCGCCT 59.855 57.895 0.00 0.00 41.33 5.52
6887 7260 1.153369 TGCCTATCTGCAAGTCGCC 60.153 57.895 0.00 0.00 41.33 5.54
6888 7261 0.460987 ACTGCCTATCTGCAAGTCGC 60.461 55.000 0.00 0.00 41.51 5.19
6889 7262 1.135915 AGACTGCCTATCTGCAAGTCG 59.864 52.381 6.77 0.00 41.51 4.18
6890 7263 2.977772 AGACTGCCTATCTGCAAGTC 57.022 50.000 4.60 4.60 41.51 3.01
6891 7264 3.710209 AAAGACTGCCTATCTGCAAGT 57.290 42.857 0.00 0.00 41.51 3.16
6892 7265 6.690194 ATTAAAAGACTGCCTATCTGCAAG 57.310 37.500 0.00 0.00 41.51 4.01
6893 7266 7.829211 AGTAATTAAAAGACTGCCTATCTGCAA 59.171 33.333 0.00 0.00 41.51 4.08
6894 7267 7.338710 AGTAATTAAAAGACTGCCTATCTGCA 58.661 34.615 0.00 0.00 39.37 4.41
6895 7268 7.041712 GGAGTAATTAAAAGACTGCCTATCTGC 60.042 40.741 0.00 0.00 0.00 4.26
6896 7269 7.169982 CGGAGTAATTAAAAGACTGCCTATCTG 59.830 40.741 0.00 0.00 0.00 2.90
6897 7270 7.147707 ACGGAGTAATTAAAAGACTGCCTATCT 60.148 37.037 0.00 0.00 41.94 1.98
6898 7271 6.985059 ACGGAGTAATTAAAAGACTGCCTATC 59.015 38.462 0.00 0.00 41.94 2.08
6899 7272 6.885922 ACGGAGTAATTAAAAGACTGCCTAT 58.114 36.000 0.00 0.00 41.94 2.57
6900 7273 6.290294 ACGGAGTAATTAAAAGACTGCCTA 57.710 37.500 0.00 0.00 41.94 3.93
6901 7274 5.161943 ACGGAGTAATTAAAAGACTGCCT 57.838 39.130 0.00 0.00 41.94 4.75
6947 7320 6.870517 CAGTTGAATAAGAACTGCAAAAAGC 58.129 36.000 0.00 0.00 42.78 3.51
6956 7329 6.655078 ATGCCAAACAGTTGAATAAGAACT 57.345 33.333 0.00 0.00 36.83 3.01
6959 7332 9.679661 TCTTATATGCCAAACAGTTGAATAAGA 57.320 29.630 0.00 0.00 36.83 2.10
6960 7333 9.722056 GTCTTATATGCCAAACAGTTGAATAAG 57.278 33.333 0.00 0.00 36.83 1.73
6961 7334 9.461312 AGTCTTATATGCCAAACAGTTGAATAA 57.539 29.630 0.00 0.00 36.83 1.40
6962 7335 9.461312 AAGTCTTATATGCCAAACAGTTGAATA 57.539 29.630 0.00 0.00 36.83 1.75
6963 7336 7.944729 AGTCTTATATGCCAAACAGTTGAAT 57.055 32.000 0.00 0.00 36.83 2.57
6964 7337 7.446931 TCAAGTCTTATATGCCAAACAGTTGAA 59.553 33.333 0.00 0.00 36.83 2.69
6965 7338 6.939730 TCAAGTCTTATATGCCAAACAGTTGA 59.060 34.615 0.00 0.00 36.83 3.18
6966 7339 7.144722 TCAAGTCTTATATGCCAAACAGTTG 57.855 36.000 0.00 0.00 34.25 3.16
6967 7340 6.375455 CCTCAAGTCTTATATGCCAAACAGTT 59.625 38.462 0.00 0.00 0.00 3.16
6968 7341 5.882557 CCTCAAGTCTTATATGCCAAACAGT 59.117 40.000 0.00 0.00 0.00 3.55
6969 7342 5.220931 GCCTCAAGTCTTATATGCCAAACAG 60.221 44.000 0.00 0.00 0.00 3.16
6970 7343 4.640201 GCCTCAAGTCTTATATGCCAAACA 59.360 41.667 0.00 0.00 0.00 2.83
6971 7344 4.640201 TGCCTCAAGTCTTATATGCCAAAC 59.360 41.667 0.00 0.00 0.00 2.93
6972 7345 4.854173 TGCCTCAAGTCTTATATGCCAAA 58.146 39.130 0.00 0.00 0.00 3.28
6973 7346 4.454678 CTGCCTCAAGTCTTATATGCCAA 58.545 43.478 0.00 0.00 0.00 4.52
6974 7347 3.181451 CCTGCCTCAAGTCTTATATGCCA 60.181 47.826 0.00 0.00 0.00 4.92
6975 7348 3.181450 ACCTGCCTCAAGTCTTATATGCC 60.181 47.826 0.00 0.00 0.00 4.40
6976 7349 4.078639 ACCTGCCTCAAGTCTTATATGC 57.921 45.455 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.