Multiple sequence alignment - TraesCS4A01G045800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G045800 chr4A 100.000 3813 0 0 2383 6195 37786823 37783011 0.000000e+00 7042.0
1 TraesCS4A01G045800 chr4A 100.000 2059 0 0 1 2059 37789205 37787147 0.000000e+00 3803.0
2 TraesCS4A01G045800 chr4A 75.361 1177 244 37 3957 5113 37317488 37318638 5.500000e-145 525.0
3 TraesCS4A01G045800 chr4A 90.541 222 18 1 3375 3593 37317010 37317231 2.180000e-74 291.0
4 TraesCS4A01G045800 chr4D 94.081 2112 86 16 3320 5429 428716658 428718732 0.000000e+00 3171.0
5 TraesCS4A01G045800 chr4D 88.302 2043 108 46 53 2055 428713792 428715743 0.000000e+00 2327.0
6 TraesCS4A01G045800 chr4D 84.816 652 36 21 2497 3126 428715987 428716597 1.150000e-166 597.0
7 TraesCS4A01G045800 chr4D 75.845 1184 238 39 3955 5117 428941829 428940673 5.420000e-155 558.0
8 TraesCS4A01G045800 chr4D 92.378 328 23 2 5869 6195 428719341 428719667 3.380000e-127 466.0
9 TraesCS4A01G045800 chr4D 86.943 314 25 9 5603 5903 428719033 428719343 7.690000e-89 339.0
10 TraesCS4A01G045800 chr4D 90.000 230 20 1 3375 3601 428942316 428942087 1.690000e-75 294.0
11 TraesCS4A01G045800 chr4B 93.523 2146 98 16 3323 5467 526737764 526735659 0.000000e+00 3155.0
12 TraesCS4A01G045800 chr4B 87.789 1212 57 34 568 1756 526740573 526739430 0.000000e+00 1334.0
13 TraesCS4A01G045800 chr4B 90.787 521 29 10 4 524 526741074 526740573 0.000000e+00 678.0
14 TraesCS4A01G045800 chr4B 75.635 1182 238 41 3955 5114 526274803 526275956 5.460000e-150 542.0
15 TraesCS4A01G045800 chr4B 85.078 449 49 11 5481 5913 526735599 526735153 5.700000e-120 442.0
16 TraesCS4A01G045800 chr4B 89.333 300 25 5 5901 6195 526735131 526734834 2.730000e-98 370.0
17 TraesCS4A01G045800 chr4B 87.307 323 23 8 2595 2913 526738381 526738073 2.750000e-93 353.0
18 TraesCS4A01G045800 chr4B 90.000 230 20 1 3375 3601 526274307 526274536 1.690000e-75 294.0
19 TraesCS4A01G045800 chr4B 84.444 225 19 4 1847 2058 526739312 526739091 2.260000e-49 207.0
20 TraesCS4A01G045800 chr4B 86.667 150 5 6 2465 2602 526738909 526738763 1.080000e-32 152.0
21 TraesCS4A01G045800 chr1A 75.345 941 189 36 4197 5117 104921088 104920171 4.470000e-111 412.0
22 TraesCS4A01G045800 chr1D 75.891 842 168 29 4197 5022 100662123 100662945 1.250000e-106 398.0
23 TraesCS4A01G045800 chr5A 73.881 1072 243 29 3970 5027 400418721 400419769 1.620000e-105 394.0
24 TraesCS4A01G045800 chrUn 74.746 887 196 21 4165 5042 23652895 23652028 7.580000e-99 372.0
25 TraesCS4A01G045800 chrUn 83.088 136 20 3 3135 3267 310358476 310358341 3.030000e-23 121.0
26 TraesCS4A01G045800 chr2D 74.588 850 188 20 4197 5033 602451498 602450664 1.280000e-91 348.0
27 TraesCS4A01G045800 chr2D 84.848 132 15 4 3131 3260 638444314 638444186 1.810000e-25 128.0
28 TraesCS4A01G045800 chr5B 84.459 148 20 3 3122 3267 532184501 532184647 6.470000e-30 143.0
29 TraesCS4A01G045800 chr5B 91.489 94 7 1 3113 3206 51062957 51063049 1.810000e-25 128.0
30 TraesCS4A01G045800 chr3B 86.614 127 8 4 3134 3260 10116364 10116481 1.400000e-26 132.0
31 TraesCS4A01G045800 chr3B 84.921 126 18 1 3135 3259 741301467 741301342 6.520000e-25 126.0
32 TraesCS4A01G045800 chr3B 84.615 130 15 3 3135 3261 741301342 741301469 2.340000e-24 124.0
33 TraesCS4A01G045800 chr6B 84.211 133 21 0 3127 3259 487832398 487832266 5.040000e-26 130.0
34 TraesCS4A01G045800 chr6B 83.721 129 15 3 3135 3260 487832266 487832391 3.920000e-22 117.0
35 TraesCS4A01G045800 chr6D 96.364 55 2 0 3205 3259 85549857 85549911 2.380000e-14 91.6
36 TraesCS4A01G045800 chr7A 85.185 81 9 2 3593 3673 712628309 712628232 5.150000e-11 80.5
37 TraesCS4A01G045800 chr7A 84.810 79 9 2 3595 3673 712490445 712490370 6.660000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G045800 chr4A 37783011 37789205 6194 True 5422.500 7042 100.0000 1 6195 2 chr4A.!!$R1 6194
1 TraesCS4A01G045800 chr4A 37317010 37318638 1628 False 408.000 525 82.9510 3375 5113 2 chr4A.!!$F1 1738
2 TraesCS4A01G045800 chr4D 428713792 428719667 5875 False 1380.000 3171 89.3040 53 6195 5 chr4D.!!$F1 6142
3 TraesCS4A01G045800 chr4D 428940673 428942316 1643 True 426.000 558 82.9225 3375 5117 2 chr4D.!!$R1 1742
4 TraesCS4A01G045800 chr4B 526734834 526741074 6240 True 836.375 3155 88.1160 4 6195 8 chr4B.!!$R1 6191
5 TraesCS4A01G045800 chr4B 526274307 526275956 1649 False 418.000 542 82.8175 3375 5114 2 chr4B.!!$F1 1739
6 TraesCS4A01G045800 chr1A 104920171 104921088 917 True 412.000 412 75.3450 4197 5117 1 chr1A.!!$R1 920
7 TraesCS4A01G045800 chr1D 100662123 100662945 822 False 398.000 398 75.8910 4197 5022 1 chr1D.!!$F1 825
8 TraesCS4A01G045800 chr5A 400418721 400419769 1048 False 394.000 394 73.8810 3970 5027 1 chr5A.!!$F1 1057
9 TraesCS4A01G045800 chrUn 23652028 23652895 867 True 372.000 372 74.7460 4165 5042 1 chrUn.!!$R1 877
10 TraesCS4A01G045800 chr2D 602450664 602451498 834 True 348.000 348 74.5880 4197 5033 1 chr2D.!!$R1 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 557 0.167908 CCACACACACACACACACAC 59.832 55.0 0.00 0.00 0.00 3.82 F
1793 1869 0.098728 CGGGCCAAACAAATCGCTAG 59.901 55.0 4.39 0.00 0.00 3.42 F
2721 3335 0.107945 GACAGTGTCATCAGCCCTCC 60.108 60.0 18.54 0.00 32.09 4.30 F
2761 3375 0.040058 AATGCTCCATGCCAGGAACA 59.960 50.0 0.00 0.77 42.00 3.18 F
2762 3376 0.395311 ATGCTCCATGCCAGGAACAG 60.395 55.0 0.00 0.00 37.20 3.16 F
3893 4553 0.679505 AGCAGCGTTTCTGTCTACCA 59.320 50.0 0.00 0.00 44.66 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 1939 0.163788 GTTCTTGGCGTCACGTCATG 59.836 55.000 4.74 8.63 42.26 3.07 R
2746 3360 0.107312 CTCCTGTTCCTGGCATGGAG 60.107 60.000 0.00 9.30 37.43 3.86 R
3630 4287 0.318441 TGAAGTTGGAGAGAGGCGTG 59.682 55.000 0.00 0.00 0.00 5.34 R
3633 4290 1.899142 ACTCTGAAGTTGGAGAGAGGC 59.101 52.381 13.25 0.00 38.42 4.70 R
3939 4599 2.175811 GTACGCGCCAAAAGCAGG 59.824 61.111 5.73 0.00 44.04 4.85 R
5581 6471 0.177141 CCTCCGTCCGGAATTGCTTA 59.823 55.000 5.23 0.00 44.66 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 4.959596 AATACATGTGTACGAGTCGACT 57.040 40.909 20.18 20.18 32.72 4.18
51 52 4.720090 ACATGTGTACGAGTCGACTTTAG 58.280 43.478 21.08 16.16 0.00 1.85
63 64 7.095899 ACGAGTCGACTTTAGTAATGGTTTTTC 60.096 37.037 21.08 0.00 0.00 2.29
203 204 2.733552 CGAGCCGTGGATCAATTATCTG 59.266 50.000 4.87 0.00 34.75 2.90
281 282 0.322816 AACCGTTGCTGATCAGGCAT 60.323 50.000 23.89 5.23 39.54 4.40
299 300 4.829492 AGGCATTATTTTCCACCTCTATGC 59.171 41.667 0.00 0.00 37.12 3.14
309 310 3.821600 TCCACCTCTATGCTAAGACGATC 59.178 47.826 0.00 0.00 0.00 3.69
341 342 7.538575 AGAATTAAGCAACATAACAAAGCGAT 58.461 30.769 0.00 0.00 0.00 4.58
342 343 7.485913 AGAATTAAGCAACATAACAAAGCGATG 59.514 33.333 0.00 0.00 0.00 3.84
393 394 2.046700 GGAACCGGTCGCATGGAA 60.047 61.111 8.04 0.00 0.00 3.53
396 397 0.462047 GAACCGGTCGCATGGAAGAT 60.462 55.000 8.04 0.00 0.00 2.40
403 404 3.635204 GCATGGAAGATCGGCGAG 58.365 61.111 17.22 0.00 0.00 5.03
404 405 2.602322 GCATGGAAGATCGGCGAGC 61.602 63.158 18.71 18.71 0.00 5.03
405 406 1.958205 CATGGAAGATCGGCGAGCC 60.958 63.158 22.74 16.53 0.00 4.70
406 407 2.434843 ATGGAAGATCGGCGAGCCA 61.435 57.895 22.74 21.35 35.37 4.75
446 447 4.182433 TGGAGGCACCACGCACAA 62.182 61.111 0.00 0.00 44.64 3.33
524 555 1.136565 GCCACACACACACACACAC 59.863 57.895 0.00 0.00 0.00 3.82
525 556 1.581727 GCCACACACACACACACACA 61.582 55.000 0.00 0.00 0.00 3.72
526 557 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
527 558 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
528 559 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
529 560 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
530 561 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
531 562 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
532 563 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
533 564 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
534 565 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
535 566 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
536 567 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
537 568 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
538 569 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
539 570 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
540 571 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
541 572 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
542 573 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
543 574 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
544 575 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
545 576 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
546 577 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
547 578 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
548 579 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
549 580 2.099756 CACACACACACACAGAGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
550 581 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
551 582 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
552 583 2.884012 ACACACACACAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
553 584 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
554 585 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
555 586 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
556 587 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
557 588 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
558 589 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
559 590 4.081476 CACACAGAGAGAGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
560 591 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
561 592 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
562 593 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
563 594 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
564 595 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
565 596 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
566 597 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
567 598 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
583 614 4.992688 AGAGAGAGTGAGTTAATGCTTCG 58.007 43.478 0.00 0.00 0.00 3.79
609 643 5.049612 GGGAGCCGTAGCAAATTAGTTTATC 60.050 44.000 0.00 0.00 43.56 1.75
610 644 5.526111 GGAGCCGTAGCAAATTAGTTTATCA 59.474 40.000 0.00 0.00 43.56 2.15
611 645 6.359480 AGCCGTAGCAAATTAGTTTATCAC 57.641 37.500 0.00 0.00 43.56 3.06
681 715 4.577246 CGAGCTAGCCAGGGTCGC 62.577 72.222 12.13 7.07 45.09 5.19
763 808 1.801309 GCTACGCCCTCTCTAGCCTG 61.801 65.000 0.00 0.00 0.00 4.85
764 809 1.152735 TACGCCCTCTCTAGCCTGG 60.153 63.158 0.00 0.00 0.00 4.45
935 980 4.377897 AGCTGAGCCACCGTTATAAATAC 58.622 43.478 0.00 0.00 0.00 1.89
949 997 7.146648 CGTTATAAATACCTCTCCTCCTTCAC 58.853 42.308 0.00 0.00 0.00 3.18
957 1005 1.000486 TCCTCCTTCACCCTCCTCG 60.000 63.158 0.00 0.00 0.00 4.63
973 1021 2.741985 CGAACCATCGCAGCCACA 60.742 61.111 0.00 0.00 42.96 4.17
980 1028 3.984193 ATCGCAGCCACAGCCTTCC 62.984 63.158 0.00 0.00 41.25 3.46
982 1030 2.282745 GCAGCCACAGCCTTCCTT 60.283 61.111 0.00 0.00 41.25 3.36
996 1044 3.292460 CCTTCCTTGATCGGTAGAGAGT 58.708 50.000 0.00 0.00 0.00 3.24
997 1045 3.702045 CCTTCCTTGATCGGTAGAGAGTT 59.298 47.826 0.00 0.00 0.00 3.01
998 1046 4.202070 CCTTCCTTGATCGGTAGAGAGTTC 60.202 50.000 0.00 0.00 0.00 3.01
999 1047 3.288964 TCCTTGATCGGTAGAGAGTTCC 58.711 50.000 0.00 0.00 0.00 3.62
1023 1071 0.972134 GAGCATCGATGGGGAGATCA 59.028 55.000 26.00 0.00 0.00 2.92
1098 1146 1.813178 GGTAACTTGAGCTGGCCTTTC 59.187 52.381 3.32 0.00 0.00 2.62
1131 1179 4.448060 CCGGTTAATTATCTCGAGCCTTTC 59.552 45.833 7.81 0.00 0.00 2.62
1139 1187 3.422417 TCTCGAGCCTTTCATCTTACG 57.578 47.619 7.81 0.00 0.00 3.18
1140 1188 2.753452 TCTCGAGCCTTTCATCTTACGT 59.247 45.455 7.81 0.00 0.00 3.57
1141 1189 3.943381 TCTCGAGCCTTTCATCTTACGTA 59.057 43.478 7.81 0.00 0.00 3.57
1142 1190 4.025015 TCGAGCCTTTCATCTTACGTAC 57.975 45.455 0.00 0.00 0.00 3.67
1165 1213 1.471287 GTCAACCGCCTTGATTAACCC 59.529 52.381 0.00 0.00 41.10 4.11
1166 1214 1.353022 TCAACCGCCTTGATTAACCCT 59.647 47.619 0.00 0.00 33.65 4.34
1172 1220 3.343617 CGCCTTGATTAACCCTTCTTCA 58.656 45.455 0.00 0.00 0.00 3.02
1419 1473 3.398310 TGTGCGCTAGCCCCATGA 61.398 61.111 9.73 0.00 44.33 3.07
1439 1498 1.746239 TGTGCACTGGCCATCGATG 60.746 57.895 18.76 18.76 40.13 3.84
1565 1625 2.677003 GCGTGCATGCGTTGGTACT 61.677 57.895 16.43 0.00 0.00 2.73
1566 1626 1.355796 GCGTGCATGCGTTGGTACTA 61.356 55.000 16.43 0.00 0.00 1.82
1567 1627 0.368907 CGTGCATGCGTTGGTACTAC 59.631 55.000 14.09 0.83 0.00 2.73
1607 1668 4.312231 GCGCGCACACACACACAT 62.312 61.111 29.10 0.00 0.00 3.21
1641 1702 3.118629 TCGATGATGCCAGCTTAGAAAGT 60.119 43.478 0.00 0.00 0.00 2.66
1642 1703 3.247173 CGATGATGCCAGCTTAGAAAGTC 59.753 47.826 0.00 0.00 0.00 3.01
1643 1704 2.621338 TGATGCCAGCTTAGAAAGTCG 58.379 47.619 0.00 0.00 0.00 4.18
1644 1705 1.328986 GATGCCAGCTTAGAAAGTCGC 59.671 52.381 0.00 0.00 0.00 5.19
1670 1731 0.319900 CTAATGACTCCGCCCCATCG 60.320 60.000 0.00 0.00 0.00 3.84
1671 1732 0.757561 TAATGACTCCGCCCCATCGA 60.758 55.000 0.00 0.00 0.00 3.59
1672 1733 1.410850 AATGACTCCGCCCCATCGAT 61.411 55.000 0.00 0.00 0.00 3.59
1673 1734 1.821061 ATGACTCCGCCCCATCGATC 61.821 60.000 0.00 0.00 0.00 3.69
1686 1750 3.812053 CCCATCGATCATCACCTTTTCTC 59.188 47.826 0.00 0.00 0.00 2.87
1689 1753 4.392921 TCGATCATCACCTTTTCTCCTC 57.607 45.455 0.00 0.00 0.00 3.71
1712 1776 2.090494 TCCTCCTCCTCCTCCCATTTAG 60.090 54.545 0.00 0.00 0.00 1.85
1715 1779 4.557705 CTCCTCCTCCTCCCATTTAGTAA 58.442 47.826 0.00 0.00 0.00 2.24
1740 1804 1.012086 CATCCGTCCATGTTGCTCAG 58.988 55.000 0.00 0.00 0.00 3.35
1746 1810 2.401766 CCATGTTGCTCAGACGGGC 61.402 63.158 0.00 0.00 0.00 6.13
1776 1852 0.318614 GGTGTGCATTGTGGAAACGG 60.319 55.000 0.00 0.00 25.06 4.44
1777 1853 0.318614 GTGTGCATTGTGGAAACGGG 60.319 55.000 0.00 0.00 0.00 5.28
1784 1860 0.970937 TTGTGGAAACGGGCCAAACA 60.971 50.000 4.39 0.00 37.12 2.83
1785 1861 0.970937 TGTGGAAACGGGCCAAACAA 60.971 50.000 4.39 0.00 37.12 2.83
1789 1865 1.414378 GAAACGGGCCAAACAAATCG 58.586 50.000 4.39 0.00 0.00 3.34
1790 1866 0.598942 AAACGGGCCAAACAAATCGC 60.599 50.000 4.39 0.00 0.00 4.58
1791 1867 1.460273 AACGGGCCAAACAAATCGCT 61.460 50.000 4.39 0.00 0.00 4.93
1793 1869 0.098728 CGGGCCAAACAAATCGCTAG 59.901 55.000 4.39 0.00 0.00 3.42
1794 1870 0.179137 GGGCCAAACAAATCGCTAGC 60.179 55.000 4.39 4.06 0.00 3.42
1795 1871 0.179137 GGCCAAACAAATCGCTAGCC 60.179 55.000 9.66 0.00 0.00 3.93
1797 1873 1.468054 GCCAAACAAATCGCTAGCCAG 60.468 52.381 9.66 0.00 0.00 4.85
1798 1874 1.133025 CCAAACAAATCGCTAGCCAGG 59.867 52.381 9.66 0.00 0.00 4.45
1801 1877 2.029838 ACAAATCGCTAGCCAGGAAG 57.970 50.000 9.66 0.00 0.00 3.46
1804 1880 1.204146 AATCGCTAGCCAGGAAGGAA 58.796 50.000 9.66 0.00 41.22 3.36
1808 1884 1.139853 CGCTAGCCAGGAAGGAAGAAT 59.860 52.381 9.66 0.00 41.22 2.40
1809 1885 2.420687 CGCTAGCCAGGAAGGAAGAATT 60.421 50.000 9.66 0.00 41.22 2.17
1811 1887 2.521547 AGCCAGGAAGGAAGAATTGG 57.478 50.000 0.00 0.00 41.22 3.16
1812 1888 1.006400 AGCCAGGAAGGAAGAATTGGG 59.994 52.381 0.00 0.00 41.22 4.12
1813 1889 1.005924 GCCAGGAAGGAAGAATTGGGA 59.994 52.381 0.00 0.00 41.22 4.37
1814 1890 2.947695 GCCAGGAAGGAAGAATTGGGAG 60.948 54.545 0.00 0.00 41.22 4.30
1815 1891 2.310052 CCAGGAAGGAAGAATTGGGAGT 59.690 50.000 0.00 0.00 41.22 3.85
1816 1892 3.615155 CAGGAAGGAAGAATTGGGAGTC 58.385 50.000 0.00 0.00 0.00 3.36
1819 1921 3.118223 GGAAGGAAGAATTGGGAGTCGAT 60.118 47.826 0.00 0.00 0.00 3.59
1821 1923 5.396436 GGAAGGAAGAATTGGGAGTCGATTA 60.396 44.000 0.00 0.00 29.85 1.75
1836 1938 3.058777 GTCGATTAAAAGCCGTGTGGAAA 60.059 43.478 0.00 0.00 37.49 3.13
1837 1939 3.058777 TCGATTAAAAGCCGTGTGGAAAC 60.059 43.478 0.00 0.00 37.49 2.78
1842 1944 0.951558 AAGCCGTGTGGAAACATGAC 59.048 50.000 0.00 0.00 46.14 3.06
1856 1958 0.163788 CATGACGTGACGCCAAGAAC 59.836 55.000 4.25 0.00 0.00 3.01
1857 1959 1.282248 ATGACGTGACGCCAAGAACG 61.282 55.000 4.25 0.00 38.63 3.95
1986 2112 2.533318 GTCGTCTTGACCCTTGCTG 58.467 57.895 0.00 0.00 42.04 4.41
1991 2117 0.884704 TCTTGACCCTTGCTGCGTTC 60.885 55.000 0.00 0.00 0.00 3.95
1998 2124 0.886490 CCTTGCTGCGTTCTTCCAGT 60.886 55.000 0.00 0.00 0.00 4.00
2025 2152 3.944087 AGTCTGTTTCCAGCCTAACATC 58.056 45.455 0.00 0.00 38.66 3.06
2043 2170 4.539726 ACATCCAGTACATTTCCATGCAT 58.460 39.130 0.00 0.00 33.05 3.96
2045 2172 3.554934 TCCAGTACATTTCCATGCATCC 58.445 45.455 0.00 0.00 33.05 3.51
2055 2182 1.826921 CATGCATCCTGGTGGCTCC 60.827 63.158 0.00 0.00 0.00 4.70
2058 2185 4.864334 CATCCTGGTGGCTCCGGC 62.864 72.222 8.95 0.00 41.11 6.13
2412 2539 4.117685 CGTACCTAAACTCTAATGTGGGC 58.882 47.826 0.00 0.00 0.00 5.36
2429 2556 1.372087 GGCGACAGGAATTCCAGCTG 61.372 60.000 26.22 17.56 38.89 4.24
2507 2729 3.449918 TCAGAGTTGGGATACATGGTGA 58.550 45.455 0.00 0.00 39.74 4.02
2508 2730 4.040047 TCAGAGTTGGGATACATGGTGAT 58.960 43.478 0.00 0.00 39.74 3.06
2509 2731 4.101585 TCAGAGTTGGGATACATGGTGATC 59.898 45.833 0.00 0.00 39.74 2.92
2610 3221 0.680061 ACCCTCGTTCCACTCACTTC 59.320 55.000 0.00 0.00 0.00 3.01
2615 3226 2.232452 CTCGTTCCACTCACTTCTCCAT 59.768 50.000 0.00 0.00 0.00 3.41
2618 3229 3.554960 CGTTCCACTCACTTCTCCATTGA 60.555 47.826 0.00 0.00 0.00 2.57
2620 3231 4.705110 TCCACTCACTTCTCCATTGAAA 57.295 40.909 0.00 0.00 0.00 2.69
2633 3244 3.386402 TCCATTGAAACCAACCCAGAAAC 59.614 43.478 0.00 0.00 0.00 2.78
2636 3247 2.808919 TGAAACCAACCCAGAAACACA 58.191 42.857 0.00 0.00 0.00 3.72
2639 3250 4.223923 TGAAACCAACCCAGAAACACAAAT 59.776 37.500 0.00 0.00 0.00 2.32
2640 3251 4.400529 AACCAACCCAGAAACACAAATC 57.599 40.909 0.00 0.00 0.00 2.17
2672 3286 2.084546 CGGGCACTTAGCTAGCTTTTT 58.915 47.619 24.88 4.04 44.79 1.94
2675 3289 2.164422 GGCACTTAGCTAGCTTTTTGGG 59.836 50.000 24.88 12.60 44.79 4.12
2713 3327 2.808543 GGTTGGTGAAGACAGTGTCATC 59.191 50.000 24.73 21.84 34.60 2.92
2718 3332 1.002430 TGAAGACAGTGTCATCAGCCC 59.998 52.381 23.57 2.62 35.75 5.19
2719 3333 1.277557 GAAGACAGTGTCATCAGCCCT 59.722 52.381 24.73 0.00 34.60 5.19
2720 3334 0.901124 AGACAGTGTCATCAGCCCTC 59.099 55.000 24.73 0.00 34.60 4.30
2721 3335 0.107945 GACAGTGTCATCAGCCCTCC 60.108 60.000 18.54 0.00 32.09 4.30
2722 3336 0.546267 ACAGTGTCATCAGCCCTCCT 60.546 55.000 0.00 0.00 0.00 3.69
2723 3337 0.617413 CAGTGTCATCAGCCCTCCTT 59.383 55.000 0.00 0.00 0.00 3.36
2757 3371 0.458669 GTGAAATGCTCCATGCCAGG 59.541 55.000 0.00 0.00 42.00 4.45
2758 3372 0.332293 TGAAATGCTCCATGCCAGGA 59.668 50.000 0.00 0.00 42.00 3.86
2759 3373 1.272592 TGAAATGCTCCATGCCAGGAA 60.273 47.619 0.00 0.00 42.00 3.36
2760 3374 1.135721 GAAATGCTCCATGCCAGGAAC 59.864 52.381 0.00 0.00 42.00 3.62
2761 3375 0.040058 AATGCTCCATGCCAGGAACA 59.960 50.000 0.00 0.77 42.00 3.18
2762 3376 0.395311 ATGCTCCATGCCAGGAACAG 60.395 55.000 0.00 0.00 37.20 3.16
2817 3431 2.353610 CCCAAGGCAATCACCCAGC 61.354 63.158 0.00 0.00 0.00 4.85
2831 3445 2.681344 CACCCAGCGACTTATTTTACCC 59.319 50.000 0.00 0.00 0.00 3.69
2832 3446 2.294979 CCCAGCGACTTATTTTACCCC 58.705 52.381 0.00 0.00 0.00 4.95
2836 3451 3.014623 AGCGACTTATTTTACCCCTTGC 58.985 45.455 0.00 0.00 0.00 4.01
2913 3528 6.969473 GCAAGTCAAACAATATTCTTCTAGGC 59.031 38.462 0.00 0.00 0.00 3.93
2914 3529 7.362056 GCAAGTCAAACAATATTCTTCTAGGCA 60.362 37.037 0.00 0.00 0.00 4.75
2915 3530 7.856145 AGTCAAACAATATTCTTCTAGGCAG 57.144 36.000 0.00 0.00 0.00 4.85
2917 3532 5.590259 TCAAACAATATTCTTCTAGGCAGCC 59.410 40.000 1.84 1.84 0.00 4.85
2964 3618 4.443913 ACTTACCAAACAAAAGCAACGT 57.556 36.364 0.00 0.00 0.00 3.99
2966 3620 4.623595 ACTTACCAAACAAAAGCAACGTTG 59.376 37.500 23.90 23.90 0.00 4.10
2967 3621 3.033368 ACCAAACAAAAGCAACGTTGT 57.967 38.095 27.78 13.07 39.63 3.32
2984 3638 5.695818 ACGTTGTGTAAAATAATCTGGCAC 58.304 37.500 0.00 0.00 0.00 5.01
2990 3644 2.646799 AAATAATCTGGCACGCGCGC 62.647 55.000 32.58 23.91 39.92 6.86
3003 3657 4.759893 CGCGCGCTTGTCTGAACG 62.760 66.667 30.48 5.07 0.00 3.95
3016 3670 1.133216 TCTGAACGCTCTGAATCCTCG 59.867 52.381 0.00 0.00 0.00 4.63
3020 3674 2.964389 GCTCTGAATCCTCGCGGC 60.964 66.667 6.13 0.00 0.00 6.53
3052 3706 2.196749 CGGTTACTATCAGCTGCAGTG 58.803 52.381 23.46 12.33 0.00 3.66
3082 3736 1.601166 GTAACGGCCTTTTGGTGACT 58.399 50.000 0.00 0.00 42.99 3.41
3105 3759 0.867746 CACCCAGACGTTGACATGTG 59.132 55.000 1.15 0.00 0.00 3.21
3106 3760 0.884704 ACCCAGACGTTGACATGTGC 60.885 55.000 1.15 0.00 0.00 4.57
3126 3780 2.812011 GCTCGGTTGGTAGTTTTGTCAT 59.188 45.455 0.00 0.00 0.00 3.06
3128 3782 4.783242 CTCGGTTGGTAGTTTTGTCATTG 58.217 43.478 0.00 0.00 0.00 2.82
3129 3783 3.003897 TCGGTTGGTAGTTTTGTCATTGC 59.996 43.478 0.00 0.00 0.00 3.56
3130 3784 3.004315 CGGTTGGTAGTTTTGTCATTGCT 59.996 43.478 0.00 0.00 0.00 3.91
3132 3786 5.356426 GGTTGGTAGTTTTGTCATTGCTTT 58.644 37.500 0.00 0.00 0.00 3.51
3136 3790 6.966021 TGGTAGTTTTGTCATTGCTTTCTAC 58.034 36.000 0.00 0.00 0.00 2.59
3138 3792 7.041372 TGGTAGTTTTGTCATTGCTTTCTACTC 60.041 37.037 0.00 0.00 0.00 2.59
3140 3794 5.241728 AGTTTTGTCATTGCTTTCTACTCCC 59.758 40.000 0.00 0.00 0.00 4.30
3142 3796 4.207891 TGTCATTGCTTTCTACTCCCTC 57.792 45.455 0.00 0.00 0.00 4.30
3143 3797 3.840666 TGTCATTGCTTTCTACTCCCTCT 59.159 43.478 0.00 0.00 0.00 3.69
3144 3798 4.187694 GTCATTGCTTTCTACTCCCTCTG 58.812 47.826 0.00 0.00 0.00 3.35
3145 3799 3.840666 TCATTGCTTTCTACTCCCTCTGT 59.159 43.478 0.00 0.00 0.00 3.41
3146 3800 5.023452 TCATTGCTTTCTACTCCCTCTGTA 58.977 41.667 0.00 0.00 0.00 2.74
3147 3801 5.483937 TCATTGCTTTCTACTCCCTCTGTAA 59.516 40.000 0.00 0.00 0.00 2.41
3148 3802 5.818678 TTGCTTTCTACTCCCTCTGTAAA 57.181 39.130 0.00 0.00 0.00 2.01
3149 3803 5.148651 TGCTTTCTACTCCCTCTGTAAAC 57.851 43.478 0.00 0.00 0.00 2.01
3150 3804 4.838986 TGCTTTCTACTCCCTCTGTAAACT 59.161 41.667 0.00 0.00 0.00 2.66
3151 3805 6.014647 TGCTTTCTACTCCCTCTGTAAACTA 58.985 40.000 0.00 0.00 0.00 2.24
3152 3806 6.495872 TGCTTTCTACTCCCTCTGTAAACTAA 59.504 38.462 0.00 0.00 0.00 2.24
3153 3807 7.180408 TGCTTTCTACTCCCTCTGTAAACTAAT 59.820 37.037 0.00 0.00 0.00 1.73
3154 3808 8.693625 GCTTTCTACTCCCTCTGTAAACTAATA 58.306 37.037 0.00 0.00 0.00 0.98
3161 3815 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3162 3816 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3163 3817 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3164 3818 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3165 3819 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3255 3909 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
3256 3910 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
3257 3911 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3269 3923 3.447944 ACAGAGGGAGTACCGATTTTCTC 59.552 47.826 0.00 0.00 46.96 2.87
3280 3934 7.112779 AGTACCGATTTTCTCATCTGGATTTT 58.887 34.615 0.00 0.00 0.00 1.82
3281 3935 6.199937 ACCGATTTTCTCATCTGGATTTTG 57.800 37.500 0.00 0.00 0.00 2.44
3283 3937 5.126061 CCGATTTTCTCATCTGGATTTTGGT 59.874 40.000 0.00 0.00 0.00 3.67
3294 3948 4.513692 TCTGGATTTTGGTACACTTTGACG 59.486 41.667 0.00 0.00 39.29 4.35
3302 3956 4.193090 TGGTACACTTTGACGTCATTTGT 58.807 39.130 20.80 22.19 0.00 2.83
3303 3957 4.636648 TGGTACACTTTGACGTCATTTGTT 59.363 37.500 23.98 11.82 0.00 2.83
3304 3958 5.816258 TGGTACACTTTGACGTCATTTGTTA 59.184 36.000 23.98 11.00 0.00 2.41
3305 3959 6.483974 TGGTACACTTTGACGTCATTTGTTAT 59.516 34.615 23.98 14.29 0.00 1.89
3306 3960 7.012515 TGGTACACTTTGACGTCATTTGTTATT 59.987 33.333 23.98 11.75 0.00 1.40
3307 3961 7.322699 GGTACACTTTGACGTCATTTGTTATTG 59.677 37.037 23.98 14.07 0.00 1.90
3308 3962 6.205784 ACACTTTGACGTCATTTGTTATTGG 58.794 36.000 20.80 8.51 0.00 3.16
3309 3963 5.629020 CACTTTGACGTCATTTGTTATTGGG 59.371 40.000 20.80 2.44 0.00 4.12
3310 3964 5.533154 ACTTTGACGTCATTTGTTATTGGGA 59.467 36.000 20.80 0.00 0.00 4.37
3311 3965 6.208599 ACTTTGACGTCATTTGTTATTGGGAT 59.791 34.615 20.80 0.00 0.00 3.85
3312 3966 5.811399 TGACGTCATTTGTTATTGGGATC 57.189 39.130 15.76 0.00 0.00 3.36
3313 3967 4.638421 TGACGTCATTTGTTATTGGGATCC 59.362 41.667 15.76 1.92 0.00 3.36
3314 3968 3.951680 ACGTCATTTGTTATTGGGATCCC 59.048 43.478 25.22 25.22 0.00 3.85
3315 3969 4.207165 CGTCATTTGTTATTGGGATCCCT 58.793 43.478 31.05 15.06 36.94 4.20
3316 3970 4.644685 CGTCATTTGTTATTGGGATCCCTT 59.355 41.667 31.05 20.33 36.94 3.95
3317 3971 5.127031 CGTCATTTGTTATTGGGATCCCTTT 59.873 40.000 31.05 19.97 36.94 3.11
3318 3972 6.340522 GTCATTTGTTATTGGGATCCCTTTG 58.659 40.000 31.05 12.44 36.94 2.77
3319 3973 6.022315 TCATTTGTTATTGGGATCCCTTTGT 58.978 36.000 31.05 16.08 36.94 2.83
3320 3974 6.500049 TCATTTGTTATTGGGATCCCTTTGTT 59.500 34.615 31.05 13.43 36.94 2.83
3321 3975 7.676043 TCATTTGTTATTGGGATCCCTTTGTTA 59.324 33.333 31.05 7.30 36.94 2.41
3328 3982 4.532834 TGGGATCCCTTTGTTATTACTGC 58.467 43.478 31.05 0.00 36.94 4.40
3358 4012 5.009010 ACTTTTTGTTGAGCTGACCTATGTG 59.991 40.000 0.00 0.00 0.00 3.21
3630 4287 2.315038 GATTGCCACTGCTGCTACGC 62.315 60.000 0.00 0.00 38.71 4.42
3633 4290 3.481903 CCACTGCTGCTACGCACG 61.482 66.667 0.00 0.00 35.74 5.34
3642 4299 2.409651 CTACGCACGCCTCTCTCC 59.590 66.667 0.00 0.00 0.00 3.71
3710 4367 2.195567 TGCAGCTTGGTTGCAGGTC 61.196 57.895 5.04 0.00 44.16 3.85
3870 4530 4.082679 AGCTCTACTTCGAGGTAAACACAG 60.083 45.833 8.86 0.00 39.75 3.66
3893 4553 0.679505 AGCAGCGTTTCTGTCTACCA 59.320 50.000 0.00 0.00 44.66 3.25
3898 4558 3.067106 AGCGTTTCTGTCTACCATGTTG 58.933 45.455 0.00 0.00 0.00 3.33
3939 4599 0.027586 GGCACGATCGTTTACATGCC 59.972 55.000 23.83 23.83 45.26 4.40
4282 4948 4.101448 GAGTGGACGCAGGGGCAT 62.101 66.667 0.00 0.00 41.24 4.40
4304 4970 1.676967 GACTACACCGTCCCCGACT 60.677 63.158 0.00 0.00 35.63 4.18
4305 4971 1.228675 ACTACACCGTCCCCGACTT 60.229 57.895 0.00 0.00 35.63 3.01
4960 5635 0.108615 GCTACGTCATGTGCCTCACT 60.109 55.000 0.00 0.00 35.11 3.41
5195 5870 3.545624 CGAGTACACCATACACGTCTAGC 60.546 52.174 0.00 0.00 0.00 3.42
5209 5884 6.454795 ACACGTCTAGCCTAGTACTAGTATC 58.545 44.000 24.84 14.90 38.60 2.24
5219 5894 5.585445 CCTAGTACTAGTATCCATAGGCGTG 59.415 48.000 24.84 4.34 0.00 5.34
5234 5910 1.658114 CGTGTAGCTAGCGCCCATA 59.342 57.895 9.55 0.00 36.60 2.74
5235 5911 0.663568 CGTGTAGCTAGCGCCCATAC 60.664 60.000 9.55 6.60 36.60 2.39
5236 5912 0.663568 GTGTAGCTAGCGCCCATACG 60.664 60.000 9.55 0.00 36.60 3.06
5237 5913 1.080705 GTAGCTAGCGCCCATACGG 60.081 63.158 9.55 0.00 36.60 4.02
5238 5914 1.529948 TAGCTAGCGCCCATACGGT 60.530 57.895 9.55 0.00 46.83 4.83
5239 5915 1.802337 TAGCTAGCGCCCATACGGTG 61.802 60.000 9.55 0.00 44.59 4.94
5240 5916 3.125607 CTAGCGCCCATACGGTGA 58.874 61.111 2.29 0.00 45.94 4.02
5241 5917 1.666011 CTAGCGCCCATACGGTGAT 59.334 57.895 2.29 0.00 45.94 3.06
5242 5918 0.033504 CTAGCGCCCATACGGTGATT 59.966 55.000 2.29 0.00 45.94 2.57
5243 5919 0.466543 TAGCGCCCATACGGTGATTT 59.533 50.000 2.29 0.00 45.94 2.17
5244 5920 0.814010 AGCGCCCATACGGTGATTTC 60.814 55.000 2.29 0.00 45.94 2.17
5245 5921 1.092921 GCGCCCATACGGTGATTTCA 61.093 55.000 0.00 0.00 45.94 2.69
5246 5922 0.937304 CGCCCATACGGTGATTTCAG 59.063 55.000 0.00 0.00 45.94 3.02
5247 5923 1.472552 CGCCCATACGGTGATTTCAGA 60.473 52.381 0.00 0.00 45.94 3.27
5248 5924 2.806745 CGCCCATACGGTGATTTCAGAT 60.807 50.000 0.00 0.00 45.94 2.90
5249 5925 3.554129 CGCCCATACGGTGATTTCAGATA 60.554 47.826 0.00 0.00 45.94 1.98
5250 5926 4.579869 GCCCATACGGTGATTTCAGATAT 58.420 43.478 0.00 0.00 0.00 1.63
5286 5968 1.340088 TGCCTGCCATTGATTGTTGT 58.660 45.000 0.00 0.00 0.00 3.32
5287 5969 1.693062 TGCCTGCCATTGATTGTTGTT 59.307 42.857 0.00 0.00 0.00 2.83
5288 5970 2.070783 GCCTGCCATTGATTGTTGTTG 58.929 47.619 0.00 0.00 0.00 3.33
5289 5971 2.548493 GCCTGCCATTGATTGTTGTTGT 60.548 45.455 0.00 0.00 0.00 3.32
5290 5972 3.731089 CCTGCCATTGATTGTTGTTGTT 58.269 40.909 0.00 0.00 0.00 2.83
5291 5973 3.495377 CCTGCCATTGATTGTTGTTGTTG 59.505 43.478 0.00 0.00 0.00 3.33
5323 6005 2.378038 TGTTGCTGGGATTTCATAGGC 58.622 47.619 0.00 0.00 0.00 3.93
5379 6061 1.382522 GCGGTGGATCATGTGTTCAT 58.617 50.000 0.00 0.00 34.21 2.57
5381 6063 2.942376 GCGGTGGATCATGTGTTCATTA 59.058 45.455 0.00 0.00 31.15 1.90
5383 6065 4.036734 GCGGTGGATCATGTGTTCATTATT 59.963 41.667 0.00 0.00 31.15 1.40
5384 6066 5.238432 GCGGTGGATCATGTGTTCATTATTA 59.762 40.000 0.00 0.00 31.15 0.98
5385 6067 6.072508 GCGGTGGATCATGTGTTCATTATTAT 60.073 38.462 0.00 0.00 31.15 1.28
5386 6068 7.521529 CGGTGGATCATGTGTTCATTATTATC 58.478 38.462 0.00 0.00 31.15 1.75
5429 6111 9.408648 AGGAGAAGTTTGATTTGTTCTTCTTAA 57.591 29.630 7.08 0.00 42.85 1.85
5460 6304 5.244626 AGTTTGCAAGTTATTTCTGCCATCT 59.755 36.000 0.00 0.00 0.00 2.90
5477 6326 7.768582 TCTGCCATCTTCGATAGTAAAATGAAA 59.231 33.333 0.00 0.00 37.40 2.69
5527 6417 8.524870 AGCAATCAAACATTAATCAACAGAAC 57.475 30.769 0.00 0.00 0.00 3.01
5540 6430 3.255149 TCAACAGAACTACTTCCTCCGTC 59.745 47.826 0.00 0.00 0.00 4.79
5542 6432 1.132643 CAGAACTACTTCCTCCGTCCG 59.867 57.143 0.00 0.00 0.00 4.79
5543 6433 0.455005 GAACTACTTCCTCCGTCCGG 59.545 60.000 0.00 0.00 0.00 5.14
5546 6436 1.341778 ACTACTTCCTCCGTCCGGAAT 60.342 52.381 5.23 0.00 44.66 3.01
5549 6439 2.395619 ACTTCCTCCGTCCGGAATTAT 58.604 47.619 5.23 0.00 44.66 1.28
5550 6440 2.770232 ACTTCCTCCGTCCGGAATTATT 59.230 45.455 5.23 0.00 44.66 1.40
5554 6444 3.131396 CCTCCGTCCGGAATTATTTGAG 58.869 50.000 5.23 4.50 44.66 3.02
5555 6445 3.131396 CTCCGTCCGGAATTATTTGAGG 58.869 50.000 5.23 0.00 44.66 3.86
5556 6446 2.767394 TCCGTCCGGAATTATTTGAGGA 59.233 45.455 5.23 1.22 42.05 3.71
5557 6447 3.131396 CCGTCCGGAATTATTTGAGGAG 58.869 50.000 5.23 0.00 37.50 3.69
5558 6448 3.131396 CGTCCGGAATTATTTGAGGAGG 58.869 50.000 5.23 1.68 0.00 4.30
5559 6449 3.431766 CGTCCGGAATTATTTGAGGAGGT 60.432 47.826 5.23 0.00 0.00 3.85
5560 6450 4.202182 CGTCCGGAATTATTTGAGGAGGTA 60.202 45.833 5.23 0.00 0.00 3.08
5562 6452 6.294899 CGTCCGGAATTATTTGAGGAGGTATA 60.295 42.308 5.23 0.00 0.00 1.47
5563 6453 7.097834 GTCCGGAATTATTTGAGGAGGTATAG 58.902 42.308 5.23 0.00 0.00 1.31
5564 6454 7.014449 TCCGGAATTATTTGAGGAGGTATAGA 58.986 38.462 0.00 0.00 0.00 1.98
5565 6455 7.678598 TCCGGAATTATTTGAGGAGGTATAGAT 59.321 37.037 0.00 0.00 0.00 1.98
5567 6457 9.804758 CGGAATTATTTGAGGAGGTATAGATAC 57.195 37.037 0.00 0.00 0.00 2.24
5579 6469 9.196139 AGGAGGTATAGATACATCTATTTCAGC 57.804 37.037 15.15 8.61 45.32 4.26
5580 6470 8.132362 GGAGGTATAGATACATCTATTTCAGCG 58.868 40.741 15.15 0.00 45.32 5.18
5581 6471 8.582657 AGGTATAGATACATCTATTTCAGCGT 57.417 34.615 15.15 3.44 45.32 5.07
5582 6472 9.682465 AGGTATAGATACATCTATTTCAGCGTA 57.318 33.333 15.15 0.00 45.32 4.42
5601 6499 1.838073 AAGCAATTCCGGACGGAGGT 61.838 55.000 13.64 5.52 46.06 3.85
5641 6543 2.321060 CGCAATTAGACGCGCCTG 59.679 61.111 5.73 0.00 45.57 4.85
5743 6648 2.477863 GCCAGCATTCATCCACGTAAAC 60.478 50.000 0.00 0.00 0.00 2.01
5762 6674 7.272948 ACGTAAACAAAAACTACAAAATCGCAA 59.727 29.630 0.00 0.00 0.00 4.85
5764 6676 9.909043 GTAAACAAAAACTACAAAATCGCAATT 57.091 25.926 0.00 0.00 0.00 2.32
5799 6715 3.638484 TCGATATGCTACCATCAACACG 58.362 45.455 0.00 0.00 32.85 4.49
5913 6861 5.590530 TGTTCAACCATAACTTTGCACTT 57.409 34.783 0.00 0.00 0.00 3.16
6020 7001 0.833287 ACATGAGCGCCCATCTAAGT 59.167 50.000 0.00 0.00 0.00 2.24
6056 7038 8.477709 GTTACATGCTCATAGTATACAAACGAC 58.522 37.037 5.50 0.00 0.00 4.34
6087 7069 6.986250 AGAGAAAAATGGAACTAAAAGCCTG 58.014 36.000 0.00 0.00 0.00 4.85
6151 7137 6.434028 AGAGCTTGTAAATCACCAAATGCTAA 59.566 34.615 0.00 0.00 0.00 3.09
6180 7166 9.186323 CCTCTGTTCACTATTATAAGATGTTCG 57.814 37.037 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.959596 AAGTCGACTCGTACACATGTAT 57.040 40.909 20.33 0.00 32.54 2.29
28 29 4.754372 AAAGTCGACTCGTACACATGTA 57.246 40.909 20.33 0.00 0.00 2.29
29 30 3.637998 AAAGTCGACTCGTACACATGT 57.362 42.857 20.33 0.00 0.00 3.21
30 31 4.720090 ACTAAAGTCGACTCGTACACATG 58.280 43.478 20.33 4.96 0.00 3.21
38 39 6.701432 AAAACCATTACTAAAGTCGACTCG 57.299 37.500 20.33 12.76 0.00 4.18
47 48 9.906660 GACATGTCATGAAAAACCATTACTAAA 57.093 29.630 21.07 0.00 0.00 1.85
51 52 7.651304 TGTTGACATGTCATGAAAAACCATTAC 59.349 33.333 28.32 18.02 39.64 1.89
63 64 8.745464 TGATTATTTGTTGTTGACATGTCATG 57.255 30.769 28.32 11.41 39.64 3.07
106 107 5.300286 GTCACTTAGAGCATGGCCAATAATT 59.700 40.000 10.96 0.00 0.00 1.40
109 110 3.199727 TGTCACTTAGAGCATGGCCAATA 59.800 43.478 10.96 0.00 0.00 1.90
111 112 1.350684 TGTCACTTAGAGCATGGCCAA 59.649 47.619 10.96 0.00 0.00 4.52
113 114 1.373570 GTGTCACTTAGAGCATGGCC 58.626 55.000 0.00 0.00 0.00 5.36
114 115 1.065854 AGGTGTCACTTAGAGCATGGC 60.066 52.381 2.35 0.00 0.00 4.40
115 116 2.499289 AGAGGTGTCACTTAGAGCATGG 59.501 50.000 2.35 0.00 0.00 3.66
281 282 6.984474 CGTCTTAGCATAGAGGTGGAAAATAA 59.016 38.462 0.00 0.00 0.00 1.40
319 320 5.516339 GCATCGCTTTGTTATGTTGCTTAAT 59.484 36.000 0.00 0.00 0.00 1.40
321 322 4.155826 AGCATCGCTTTGTTATGTTGCTTA 59.844 37.500 0.00 0.00 33.89 3.09
323 324 2.489329 AGCATCGCTTTGTTATGTTGCT 59.511 40.909 0.00 0.00 33.89 3.91
324 325 2.848302 GAGCATCGCTTTGTTATGTTGC 59.152 45.455 0.00 0.00 39.88 4.17
325 326 4.337763 GAGAGCATCGCTTTGTTATGTTG 58.662 43.478 0.00 0.00 39.88 3.33
326 327 3.375299 GGAGAGCATCGCTTTGTTATGTT 59.625 43.478 0.00 0.00 39.88 2.71
327 328 2.939103 GGAGAGCATCGCTTTGTTATGT 59.061 45.455 0.00 0.00 39.88 2.29
328 329 2.033407 CGGAGAGCATCGCTTTGTTATG 60.033 50.000 0.00 0.00 39.88 1.90
329 330 2.205074 CGGAGAGCATCGCTTTGTTAT 58.795 47.619 0.00 0.00 39.88 1.89
330 331 1.640428 CGGAGAGCATCGCTTTGTTA 58.360 50.000 0.00 0.00 39.88 2.41
331 332 1.021390 CCGGAGAGCATCGCTTTGTT 61.021 55.000 0.00 0.00 39.88 2.83
332 333 1.448540 CCGGAGAGCATCGCTTTGT 60.449 57.895 0.00 0.00 39.88 2.83
341 342 1.078214 CTGATTTGGCCGGAGAGCA 60.078 57.895 5.05 0.00 0.00 4.26
342 343 1.092345 GTCTGATTTGGCCGGAGAGC 61.092 60.000 5.05 0.00 0.00 4.09
376 377 2.046700 TTCCATGCGACCGGTTCC 60.047 61.111 9.42 3.07 0.00 3.62
393 394 3.910490 GCTCTGGCTCGCCGATCT 61.910 66.667 3.14 0.00 39.42 2.75
401 402 3.388703 CTGGCTCTGGCTCTGGCTC 62.389 68.421 0.00 0.00 38.73 4.70
402 403 3.400928 CTGGCTCTGGCTCTGGCT 61.401 66.667 0.00 0.00 38.73 4.75
403 404 2.663423 GATCTGGCTCTGGCTCTGGC 62.663 65.000 0.00 0.00 38.73 4.85
404 405 1.446791 GATCTGGCTCTGGCTCTGG 59.553 63.158 0.00 0.00 38.73 3.86
405 406 1.067749 CGATCTGGCTCTGGCTCTG 59.932 63.158 0.00 0.00 38.73 3.35
406 407 0.469705 ATCGATCTGGCTCTGGCTCT 60.470 55.000 0.00 0.00 38.73 4.09
411 412 1.269673 CCACTCATCGATCTGGCTCTG 60.270 57.143 0.00 0.00 0.00 3.35
460 461 4.097218 GTCCCTTTTGACCTGGCC 57.903 61.111 0.00 0.00 0.00 5.36
524 555 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
525 556 1.275010 TCTCTGTGTGTGTGTGTGTGT 59.725 47.619 0.00 0.00 0.00 3.72
526 557 1.929169 CTCTCTGTGTGTGTGTGTGTG 59.071 52.381 0.00 0.00 0.00 3.82
527 558 1.824852 TCTCTCTGTGTGTGTGTGTGT 59.175 47.619 0.00 0.00 0.00 3.72
528 559 2.099756 TCTCTCTCTGTGTGTGTGTGTG 59.900 50.000 0.00 0.00 0.00 3.82
529 560 2.360483 CTCTCTCTCTGTGTGTGTGTGT 59.640 50.000 0.00 0.00 0.00 3.72
530 561 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
531 562 2.884012 CTCTCTCTCTCTGTGTGTGTGT 59.116 50.000 0.00 0.00 0.00 3.72
532 563 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
533 564 3.072330 TCTCTCTCTCTCTCTGTGTGTGT 59.928 47.826 0.00 0.00 0.00 3.72
534 565 3.673902 TCTCTCTCTCTCTCTGTGTGTG 58.326 50.000 0.00 0.00 0.00 3.82
535 566 3.582647 TCTCTCTCTCTCTCTCTGTGTGT 59.417 47.826 0.00 0.00 0.00 3.72
536 567 4.081476 TCTCTCTCTCTCTCTCTCTGTGTG 60.081 50.000 0.00 0.00 0.00 3.82
537 568 4.096681 TCTCTCTCTCTCTCTCTCTGTGT 58.903 47.826 0.00 0.00 0.00 3.72
538 569 4.403752 TCTCTCTCTCTCTCTCTCTCTGTG 59.596 50.000 0.00 0.00 0.00 3.66
539 570 4.614475 TCTCTCTCTCTCTCTCTCTCTGT 58.386 47.826 0.00 0.00 0.00 3.41
540 571 4.892345 TCTCTCTCTCTCTCTCTCTCTCTG 59.108 50.000 0.00 0.00 0.00 3.35
541 572 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
542 573 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
543 574 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
544 575 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
545 576 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
546 577 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
547 578 4.648762 CACTCTCTCTCTCTCTCTCTCTCT 59.351 50.000 0.00 0.00 0.00 3.10
548 579 4.646945 TCACTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
549 580 4.614475 TCACTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
550 581 4.404073 ACTCACTCTCTCTCTCTCTCTCTC 59.596 50.000 0.00 0.00 0.00 3.20
551 582 4.357325 ACTCACTCTCTCTCTCTCTCTCT 58.643 47.826 0.00 0.00 0.00 3.10
552 583 4.744795 ACTCACTCTCTCTCTCTCTCTC 57.255 50.000 0.00 0.00 0.00 3.20
553 584 6.620877 TTAACTCACTCTCTCTCTCTCTCT 57.379 41.667 0.00 0.00 0.00 3.10
554 585 6.238484 GCATTAACTCACTCTCTCTCTCTCTC 60.238 46.154 0.00 0.00 0.00 3.20
555 586 5.590259 GCATTAACTCACTCTCTCTCTCTCT 59.410 44.000 0.00 0.00 0.00 3.10
556 587 5.590259 AGCATTAACTCACTCTCTCTCTCTC 59.410 44.000 0.00 0.00 0.00 3.20
557 588 5.509498 AGCATTAACTCACTCTCTCTCTCT 58.491 41.667 0.00 0.00 0.00 3.10
558 589 5.835113 AGCATTAACTCACTCTCTCTCTC 57.165 43.478 0.00 0.00 0.00 3.20
559 590 5.163663 CGAAGCATTAACTCACTCTCTCTCT 60.164 44.000 0.00 0.00 0.00 3.10
560 591 5.034152 CGAAGCATTAACTCACTCTCTCTC 58.966 45.833 0.00 0.00 0.00 3.20
561 592 4.702612 TCGAAGCATTAACTCACTCTCTCT 59.297 41.667 0.00 0.00 0.00 3.10
562 593 4.987832 TCGAAGCATTAACTCACTCTCTC 58.012 43.478 0.00 0.00 0.00 3.20
563 594 4.142271 CCTCGAAGCATTAACTCACTCTCT 60.142 45.833 0.00 0.00 0.00 3.10
564 595 4.109050 CCTCGAAGCATTAACTCACTCTC 58.891 47.826 0.00 0.00 0.00 3.20
565 596 3.118956 CCCTCGAAGCATTAACTCACTCT 60.119 47.826 0.00 0.00 0.00 3.24
566 597 3.119101 TCCCTCGAAGCATTAACTCACTC 60.119 47.826 0.00 0.00 0.00 3.51
567 598 2.832129 TCCCTCGAAGCATTAACTCACT 59.168 45.455 0.00 0.00 0.00 3.41
583 614 2.158943 ACTAATTTGCTACGGCTCCCTC 60.159 50.000 0.00 0.00 39.59 4.30
681 715 2.076863 CAAACGGAAAGGGACTAGCTG 58.923 52.381 0.00 0.00 38.49 4.24
763 808 5.581479 GGTTTACTTCTTGTTAGAGCTAGCC 59.419 44.000 12.13 2.81 0.00 3.93
764 809 5.581479 GGGTTTACTTCTTGTTAGAGCTAGC 59.419 44.000 6.62 6.62 0.00 3.42
807 852 2.987593 CTTATATAGGCGCGCGCG 59.012 61.111 45.73 45.73 43.06 6.86
808 853 2.014093 CTGCTTATATAGGCGCGCGC 62.014 60.000 44.40 44.40 41.06 6.86
892 937 1.817209 GGCGGCTAAGCTGAGTAGT 59.183 57.895 0.00 0.00 37.02 2.73
893 938 1.299468 CGGCGGCTAAGCTGAGTAG 60.299 63.158 7.61 0.00 45.94 2.57
894 939 2.782222 CCGGCGGCTAAGCTGAGTA 61.782 63.158 15.42 0.00 45.94 2.59
935 980 0.689412 GGAGGGTGAAGGAGGAGAGG 60.689 65.000 0.00 0.00 0.00 3.69
957 1005 3.044059 GCTGTGGCTGCGATGGTTC 62.044 63.158 0.00 0.00 35.22 3.62
965 1013 2.282745 AAGGAAGGCTGTGGCTGC 60.283 61.111 0.00 0.00 38.81 5.25
966 1014 0.323178 ATCAAGGAAGGCTGTGGCTG 60.323 55.000 0.00 0.00 38.81 4.85
967 1015 0.034670 GATCAAGGAAGGCTGTGGCT 60.035 55.000 0.00 0.00 41.24 4.75
968 1016 1.372087 CGATCAAGGAAGGCTGTGGC 61.372 60.000 0.00 0.00 37.82 5.01
969 1017 0.745845 CCGATCAAGGAAGGCTGTGG 60.746 60.000 0.00 0.00 0.00 4.17
970 1018 0.036010 ACCGATCAAGGAAGGCTGTG 60.036 55.000 0.00 0.00 34.73 3.66
971 1019 1.482593 CTACCGATCAAGGAAGGCTGT 59.517 52.381 0.00 0.00 34.73 4.40
972 1020 1.757118 TCTACCGATCAAGGAAGGCTG 59.243 52.381 0.00 0.00 34.73 4.85
973 1021 2.035632 CTCTACCGATCAAGGAAGGCT 58.964 52.381 0.00 0.00 34.73 4.58
980 1028 4.339530 TCATGGAACTCTCTACCGATCAAG 59.660 45.833 0.00 0.00 0.00 3.02
982 1030 3.885901 CTCATGGAACTCTCTACCGATCA 59.114 47.826 0.00 0.00 0.00 2.92
996 1044 1.071228 CCCATCGATGCTCTCATGGAA 59.929 52.381 20.25 0.00 40.11 3.53
997 1045 0.683412 CCCATCGATGCTCTCATGGA 59.317 55.000 20.25 0.00 40.79 3.41
998 1046 0.321387 CCCCATCGATGCTCTCATGG 60.321 60.000 20.25 13.03 34.71 3.66
999 1047 0.683412 TCCCCATCGATGCTCTCATG 59.317 55.000 20.25 4.30 31.96 3.07
1062 1110 2.874648 TACCATTCAGCAGCAGGGCG 62.875 60.000 0.00 0.00 39.27 6.13
1098 1146 6.036083 CGAGATAATTAACCGGCCATAAGATG 59.964 42.308 0.00 0.00 0.00 2.90
1131 1179 3.176708 CGGTTGACCAGTACGTAAGATG 58.823 50.000 0.00 0.00 37.09 2.90
1139 1187 0.034337 TCAAGGCGGTTGACCAGTAC 59.966 55.000 0.51 0.00 40.45 2.73
1140 1188 2.443168 TCAAGGCGGTTGACCAGTA 58.557 52.632 0.51 0.00 40.45 2.74
1141 1189 3.236391 TCAAGGCGGTTGACCAGT 58.764 55.556 0.51 0.00 40.45 4.00
1165 1213 4.512484 GTGGAGAAAGGAGGATGAAGAAG 58.488 47.826 0.00 0.00 0.00 2.85
1166 1214 3.055819 CGTGGAGAAAGGAGGATGAAGAA 60.056 47.826 0.00 0.00 0.00 2.52
1172 1220 0.539051 CTGCGTGGAGAAAGGAGGAT 59.461 55.000 0.00 0.00 0.00 3.24
1293 1347 2.900337 CCGGCCGGCCAGAAATAC 60.900 66.667 42.78 15.67 35.37 1.89
1366 1420 3.935133 CTTGTGAGCAACGACATCG 57.065 52.632 0.00 0.00 46.33 3.84
1419 1473 2.189191 ATCGATGGCCAGTGCACACT 62.189 55.000 21.04 0.00 43.61 3.55
1439 1498 1.519455 CGAGATTGTCCCCGTGCTC 60.519 63.158 0.00 0.00 0.00 4.26
1592 1653 0.439985 CTAGATGTGTGTGTGTGCGC 59.560 55.000 0.00 0.00 0.00 6.09
1594 1655 1.800805 AGCTAGATGTGTGTGTGTGC 58.199 50.000 0.00 0.00 0.00 4.57
1603 1664 5.619625 TCATCGATCACTAGCTAGATGTG 57.380 43.478 27.45 15.67 37.38 3.21
1604 1665 5.392919 GCATCATCGATCACTAGCTAGATGT 60.393 44.000 27.45 11.50 37.38 3.06
1605 1666 5.036090 GCATCATCGATCACTAGCTAGATG 58.964 45.833 27.45 19.50 37.43 2.90
1607 1668 3.441922 GGCATCATCGATCACTAGCTAGA 59.558 47.826 27.45 6.45 0.00 2.43
1641 1702 1.400846 GGAGTCATTAGTCACGAGCGA 59.599 52.381 0.00 0.00 0.00 4.93
1642 1703 1.828832 GGAGTCATTAGTCACGAGCG 58.171 55.000 0.00 0.00 0.00 5.03
1643 1704 1.828832 CGGAGTCATTAGTCACGAGC 58.171 55.000 0.00 0.00 0.00 5.03
1644 1705 1.534175 GGCGGAGTCATTAGTCACGAG 60.534 57.143 0.00 0.00 0.00 4.18
1670 1731 4.444164 GGAGGAGGAGAAAAGGTGATGATC 60.444 50.000 0.00 0.00 0.00 2.92
1671 1732 3.457749 GGAGGAGGAGAAAAGGTGATGAT 59.542 47.826 0.00 0.00 0.00 2.45
1672 1733 2.840651 GGAGGAGGAGAAAAGGTGATGA 59.159 50.000 0.00 0.00 0.00 2.92
1673 1734 2.843113 AGGAGGAGGAGAAAAGGTGATG 59.157 50.000 0.00 0.00 0.00 3.07
1686 1750 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1689 1753 1.673928 ATGGGAGGAGGAGGAGGAGG 61.674 65.000 0.00 0.00 0.00 4.30
1712 1776 5.331902 CAACATGGACGGATGAACATTTAC 58.668 41.667 0.00 0.00 0.00 2.01
1715 1779 2.164219 GCAACATGGACGGATGAACATT 59.836 45.455 0.00 0.00 0.00 2.71
1740 1804 2.029666 CCCATCTGATCGCCCGTC 59.970 66.667 0.00 0.00 0.00 4.79
1746 1810 0.179037 ATGCACACCCCATCTGATCG 60.179 55.000 0.00 0.00 0.00 3.69
1776 1852 0.179137 GGCTAGCGATTTGTTTGGCC 60.179 55.000 9.00 0.00 0.00 5.36
1777 1853 0.525761 TGGCTAGCGATTTGTTTGGC 59.474 50.000 9.00 0.00 0.00 4.52
1784 1860 1.204146 TCCTTCCTGGCTAGCGATTT 58.796 50.000 9.00 0.00 35.26 2.17
1785 1861 1.139853 CTTCCTTCCTGGCTAGCGATT 59.860 52.381 9.00 0.00 35.26 3.34
1789 1865 2.948315 CAATTCTTCCTTCCTGGCTAGC 59.052 50.000 6.04 6.04 35.26 3.42
1790 1866 3.549794 CCAATTCTTCCTTCCTGGCTAG 58.450 50.000 0.00 0.00 35.26 3.42
1791 1867 2.242196 CCCAATTCTTCCTTCCTGGCTA 59.758 50.000 0.00 0.00 35.26 3.93
1793 1869 1.005924 TCCCAATTCTTCCTTCCTGGC 59.994 52.381 0.00 0.00 35.26 4.85
1794 1870 2.310052 ACTCCCAATTCTTCCTTCCTGG 59.690 50.000 0.00 0.00 37.10 4.45
1795 1871 3.615155 GACTCCCAATTCTTCCTTCCTG 58.385 50.000 0.00 0.00 0.00 3.86
1797 1873 2.236395 TCGACTCCCAATTCTTCCTTCC 59.764 50.000 0.00 0.00 0.00 3.46
1798 1874 3.611766 TCGACTCCCAATTCTTCCTTC 57.388 47.619 0.00 0.00 0.00 3.46
1801 1877 6.678164 GCTTTTAATCGACTCCCAATTCTTCC 60.678 42.308 0.00 0.00 0.00 3.46
1804 1880 4.640647 GGCTTTTAATCGACTCCCAATTCT 59.359 41.667 0.00 0.00 0.00 2.40
1808 1884 2.289819 ACGGCTTTTAATCGACTCCCAA 60.290 45.455 0.00 0.00 0.00 4.12
1809 1885 1.276989 ACGGCTTTTAATCGACTCCCA 59.723 47.619 0.00 0.00 0.00 4.37
1811 1887 2.093783 CACACGGCTTTTAATCGACTCC 59.906 50.000 0.00 0.00 0.00 3.85
1812 1888 2.093783 CCACACGGCTTTTAATCGACTC 59.906 50.000 0.00 0.00 0.00 3.36
1813 1889 2.073816 CCACACGGCTTTTAATCGACT 58.926 47.619 0.00 0.00 0.00 4.18
1814 1890 2.070783 TCCACACGGCTTTTAATCGAC 58.929 47.619 0.00 0.00 0.00 4.20
1815 1891 2.459060 TCCACACGGCTTTTAATCGA 57.541 45.000 0.00 0.00 0.00 3.59
1816 1892 3.231160 GTTTCCACACGGCTTTTAATCG 58.769 45.455 0.00 0.00 0.00 3.34
1819 1921 3.632604 TCATGTTTCCACACGGCTTTTAA 59.367 39.130 0.00 0.00 35.03 1.52
1821 1923 2.028130 TCATGTTTCCACACGGCTTTT 58.972 42.857 0.00 0.00 35.03 2.27
1836 1938 0.249699 TTCTTGGCGTCACGTCATGT 60.250 50.000 16.34 0.00 42.26 3.21
1837 1939 0.163788 GTTCTTGGCGTCACGTCATG 59.836 55.000 4.74 8.63 42.26 3.07
1842 1944 3.411351 CCCGTTCTTGGCGTCACG 61.411 66.667 0.00 0.00 0.00 4.35
1856 1958 2.049985 GCCATCTCGATCGACCCG 60.050 66.667 15.15 4.99 0.00 5.28
1857 1959 2.340443 GGCCATCTCGATCGACCC 59.660 66.667 15.15 6.03 0.00 4.46
1887 1989 1.359459 GATTGGTTCGGCGTGACTCC 61.359 60.000 6.85 4.34 0.00 3.85
1973 2099 0.886490 AGAACGCAGCAAGGGTCAAG 60.886 55.000 0.00 0.00 43.40 3.02
1986 2112 1.071605 CTAGCACACTGGAAGAACGC 58.928 55.000 0.00 0.00 37.43 4.84
1991 2117 3.393089 AACAGACTAGCACACTGGAAG 57.607 47.619 0.00 0.00 42.29 3.46
2025 2152 3.317149 CAGGATGCATGGAAATGTACTGG 59.683 47.826 2.46 0.00 0.00 4.00
2382 2509 4.840716 AGAGTTTAGGTACGGAGAGAGA 57.159 45.455 0.00 0.00 0.00 3.10
2383 2510 6.543100 ACATTAGAGTTTAGGTACGGAGAGAG 59.457 42.308 0.00 0.00 0.00 3.20
2384 2511 6.318144 CACATTAGAGTTTAGGTACGGAGAGA 59.682 42.308 0.00 0.00 0.00 3.10
2385 2512 6.459848 CCACATTAGAGTTTAGGTACGGAGAG 60.460 46.154 0.00 0.00 0.00 3.20
2386 2513 5.359009 CCACATTAGAGTTTAGGTACGGAGA 59.641 44.000 0.00 0.00 0.00 3.71
2387 2514 5.451520 CCCACATTAGAGTTTAGGTACGGAG 60.452 48.000 0.00 0.00 0.00 4.63
2388 2515 4.403432 CCCACATTAGAGTTTAGGTACGGA 59.597 45.833 0.00 0.00 0.00 4.69
2389 2516 4.690122 CCCACATTAGAGTTTAGGTACGG 58.310 47.826 0.00 0.00 0.00 4.02
2390 2517 4.117685 GCCCACATTAGAGTTTAGGTACG 58.882 47.826 0.00 0.00 0.00 3.67
2391 2518 4.117685 CGCCCACATTAGAGTTTAGGTAC 58.882 47.826 0.00 0.00 0.00 3.34
2412 2539 0.674581 TGCAGCTGGAATTCCTGTCG 60.675 55.000 26.61 19.92 37.30 4.35
2456 2583 4.754618 AGTTGCGTTCACAAATCACTATGA 59.245 37.500 0.00 0.00 0.00 2.15
2457 2584 5.034554 AGTTGCGTTCACAAATCACTATG 57.965 39.130 0.00 0.00 0.00 2.23
2458 2585 5.689383 AAGTTGCGTTCACAAATCACTAT 57.311 34.783 0.00 0.00 0.00 2.12
2459 2586 5.163703 ACAAAGTTGCGTTCACAAATCACTA 60.164 36.000 0.00 0.00 0.00 2.74
2507 2729 0.748450 CCGAAAAGCATGGCCATGAT 59.252 50.000 43.18 37.35 41.20 2.45
2508 2730 1.947597 GCCGAAAAGCATGGCCATGA 61.948 55.000 43.18 6.85 43.06 3.07
2509 2731 1.519898 GCCGAAAAGCATGGCCATG 60.520 57.895 36.80 36.80 43.06 3.66
2529 2751 4.120755 CCTCCCCTGCTTGGCCTC 62.121 72.222 3.32 0.00 0.00 4.70
2549 2771 1.980052 CGGACACTGGGGTACACAT 59.020 57.895 0.00 0.00 0.00 3.21
2591 2813 0.680061 GAAGTGAGTGGAACGAGGGT 59.320 55.000 0.00 0.00 45.86 4.34
2610 3221 2.875296 TCTGGGTTGGTTTCAATGGAG 58.125 47.619 0.00 0.00 35.10 3.86
2615 3226 3.165875 TGTGTTTCTGGGTTGGTTTCAA 58.834 40.909 0.00 0.00 0.00 2.69
2618 3229 4.223923 TGATTTGTGTTTCTGGGTTGGTTT 59.776 37.500 0.00 0.00 0.00 3.27
2620 3231 3.370104 TGATTTGTGTTTCTGGGTTGGT 58.630 40.909 0.00 0.00 0.00 3.67
2633 3244 2.537529 CCGAGTAAGCGCATGATTTGTG 60.538 50.000 11.47 0.00 38.93 3.33
2636 3247 1.299541 CCCGAGTAAGCGCATGATTT 58.700 50.000 11.47 0.00 0.00 2.17
2639 3250 2.202878 GCCCGAGTAAGCGCATGA 60.203 61.111 11.47 0.00 0.00 3.07
2640 3251 2.511373 TGCCCGAGTAAGCGCATG 60.511 61.111 11.47 0.00 0.00 4.06
2672 3286 1.409427 CAACCGGCAAAAGTTAACCCA 59.591 47.619 0.00 0.00 0.00 4.51
2675 3289 2.861335 CAACCAACCGGCAAAAGTTAAC 59.139 45.455 0.00 0.00 34.57 2.01
2713 3327 0.540923 CAGAAGGAGAAGGAGGGCTG 59.459 60.000 0.00 0.00 0.00 4.85
2718 3332 2.027377 ACACATGCAGAAGGAGAAGGAG 60.027 50.000 0.00 0.00 0.00 3.69
2719 3333 1.980765 ACACATGCAGAAGGAGAAGGA 59.019 47.619 0.00 0.00 0.00 3.36
2720 3334 2.082231 CACACATGCAGAAGGAGAAGG 58.918 52.381 0.00 0.00 0.00 3.46
2721 3335 3.049708 TCACACATGCAGAAGGAGAAG 57.950 47.619 0.00 0.00 0.00 2.85
2722 3336 3.490439 TTCACACATGCAGAAGGAGAA 57.510 42.857 0.00 0.00 0.00 2.87
2723 3337 3.490439 TTTCACACATGCAGAAGGAGA 57.510 42.857 0.00 0.00 0.00 3.71
2746 3360 0.107312 CTCCTGTTCCTGGCATGGAG 60.107 60.000 0.00 9.30 37.43 3.86
2757 3371 1.270358 ACTTTGGTCGAGCTCCTGTTC 60.270 52.381 16.64 0.00 0.00 3.18
2758 3372 0.759346 ACTTTGGTCGAGCTCCTGTT 59.241 50.000 16.64 0.00 0.00 3.16
2759 3373 0.318762 GACTTTGGTCGAGCTCCTGT 59.681 55.000 16.64 9.19 32.47 4.00
2760 3374 0.318441 TGACTTTGGTCGAGCTCCTG 59.682 55.000 16.64 6.11 44.83 3.86
2761 3375 1.001406 CTTGACTTTGGTCGAGCTCCT 59.999 52.381 16.64 0.00 44.17 3.69
2762 3376 1.433534 CTTGACTTTGGTCGAGCTCC 58.566 55.000 16.64 0.00 44.17 4.70
2813 3427 3.277142 AGGGGTAAAATAAGTCGCTGG 57.723 47.619 0.00 0.00 0.00 4.85
2814 3428 3.181500 GCAAGGGGTAAAATAAGTCGCTG 60.181 47.826 0.00 0.00 0.00 5.18
2817 3431 5.878669 ACTTAGCAAGGGGTAAAATAAGTCG 59.121 40.000 0.00 0.00 36.62 4.18
2831 3445 3.873952 GCCTAACATGAGACTTAGCAAGG 59.126 47.826 0.00 0.00 0.00 3.61
2832 3446 3.553511 CGCCTAACATGAGACTTAGCAAG 59.446 47.826 0.00 0.00 0.00 4.01
2836 3451 3.119291 CAGCGCCTAACATGAGACTTAG 58.881 50.000 2.29 0.00 0.00 2.18
2925 3540 0.393537 GTTATCACTGGCTGGCTGCT 60.394 55.000 16.14 0.00 42.39 4.24
2926 3541 0.393537 AGTTATCACTGGCTGGCTGC 60.394 55.000 7.96 7.96 41.94 5.25
2964 3618 4.670478 CGCGTGCCAGATTATTTTACACAA 60.670 41.667 0.00 0.00 0.00 3.33
2966 3620 3.350912 CGCGTGCCAGATTATTTTACAC 58.649 45.455 0.00 0.00 0.00 2.90
2967 3621 2.223157 GCGCGTGCCAGATTATTTTACA 60.223 45.455 10.56 0.00 33.98 2.41
2990 3644 0.664466 TCAGAGCGTTCAGACAAGCG 60.664 55.000 1.01 0.00 34.34 4.68
3020 3674 0.109597 AGTAACCGTACGTCGCCAAG 60.110 55.000 15.21 0.00 38.35 3.61
3030 3684 3.021695 ACTGCAGCTGATAGTAACCGTA 58.978 45.455 20.43 0.00 0.00 4.02
3031 3685 1.825474 ACTGCAGCTGATAGTAACCGT 59.175 47.619 20.43 0.00 0.00 4.83
3032 3686 2.196749 CACTGCAGCTGATAGTAACCG 58.803 52.381 20.43 5.19 0.00 4.44
3033 3687 2.093447 ACCACTGCAGCTGATAGTAACC 60.093 50.000 20.43 0.00 0.00 2.85
3052 3706 1.293963 GGCCGTTACCGTTCAGAACC 61.294 60.000 7.76 0.00 0.00 3.62
3082 3736 2.404923 TGTCAACGTCTGGGTGAAAA 57.595 45.000 0.00 0.00 0.00 2.29
3090 3744 0.436150 CGAGCACATGTCAACGTCTG 59.564 55.000 0.00 0.00 0.00 3.51
3105 3759 2.215196 TGACAAAACTACCAACCGAGC 58.785 47.619 0.00 0.00 0.00 5.03
3106 3760 4.783242 CAATGACAAAACTACCAACCGAG 58.217 43.478 0.00 0.00 0.00 4.63
3126 3780 5.307196 AGTTTACAGAGGGAGTAGAAAGCAA 59.693 40.000 0.00 0.00 0.00 3.91
3128 3782 5.408880 AGTTTACAGAGGGAGTAGAAAGC 57.591 43.478 0.00 0.00 0.00 3.51
3136 3790 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3138 3792 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3229 3883 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
3230 3884 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
3231 3885 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3235 3889 9.071276 CGGTACTCCCTCTGTAAACTAATATAA 57.929 37.037 0.00 0.00 0.00 0.98
3236 3890 8.439971 TCGGTACTCCCTCTGTAAACTAATATA 58.560 37.037 0.00 0.00 0.00 0.86
3237 3891 7.293073 TCGGTACTCCCTCTGTAAACTAATAT 58.707 38.462 0.00 0.00 0.00 1.28
3238 3892 6.662755 TCGGTACTCCCTCTGTAAACTAATA 58.337 40.000 0.00 0.00 0.00 0.98
3239 3893 5.513233 TCGGTACTCCCTCTGTAAACTAAT 58.487 41.667 0.00 0.00 0.00 1.73
3240 3894 4.922206 TCGGTACTCCCTCTGTAAACTAA 58.078 43.478 0.00 0.00 0.00 2.24
3241 3895 4.574674 TCGGTACTCCCTCTGTAAACTA 57.425 45.455 0.00 0.00 0.00 2.24
3242 3896 3.446442 TCGGTACTCCCTCTGTAAACT 57.554 47.619 0.00 0.00 0.00 2.66
3243 3897 4.732672 AATCGGTACTCCCTCTGTAAAC 57.267 45.455 0.00 0.00 0.00 2.01
3244 3898 5.482878 AGAAAATCGGTACTCCCTCTGTAAA 59.517 40.000 0.00 0.00 0.00 2.01
3245 3899 5.021458 AGAAAATCGGTACTCCCTCTGTAA 58.979 41.667 0.00 0.00 0.00 2.41
3246 3900 4.607239 AGAAAATCGGTACTCCCTCTGTA 58.393 43.478 0.00 0.00 0.00 2.74
3247 3901 3.442076 AGAAAATCGGTACTCCCTCTGT 58.558 45.455 0.00 0.00 0.00 3.41
3248 3902 3.447586 TGAGAAAATCGGTACTCCCTCTG 59.552 47.826 0.00 0.00 0.00 3.35
3249 3903 3.709587 TGAGAAAATCGGTACTCCCTCT 58.290 45.455 0.00 0.00 0.00 3.69
3250 3904 4.342665 AGATGAGAAAATCGGTACTCCCTC 59.657 45.833 0.00 0.00 0.00 4.30
3251 3905 4.100189 CAGATGAGAAAATCGGTACTCCCT 59.900 45.833 0.00 0.00 0.00 4.20
3252 3906 4.372656 CAGATGAGAAAATCGGTACTCCC 58.627 47.826 0.00 0.00 0.00 4.30
3253 3907 4.099573 TCCAGATGAGAAAATCGGTACTCC 59.900 45.833 0.00 0.00 0.00 3.85
3254 3908 5.263968 TCCAGATGAGAAAATCGGTACTC 57.736 43.478 0.00 0.00 0.00 2.59
3255 3909 5.878406 ATCCAGATGAGAAAATCGGTACT 57.122 39.130 0.00 0.00 0.00 2.73
3256 3910 6.927294 AAATCCAGATGAGAAAATCGGTAC 57.073 37.500 0.00 0.00 0.00 3.34
3257 3911 6.318648 CCAAAATCCAGATGAGAAAATCGGTA 59.681 38.462 0.00 0.00 0.00 4.02
3258 3912 5.126061 CCAAAATCCAGATGAGAAAATCGGT 59.874 40.000 0.00 0.00 0.00 4.69
3269 3923 6.381801 GTCAAAGTGTACCAAAATCCAGATG 58.618 40.000 0.00 0.00 0.00 2.90
3280 3934 4.193090 ACAAATGACGTCAAAGTGTACCA 58.807 39.130 24.13 0.00 0.00 3.25
3281 3935 4.806342 ACAAATGACGTCAAAGTGTACC 57.194 40.909 24.13 0.00 0.00 3.34
3283 3937 7.356540 CCAATAACAAATGACGTCAAAGTGTA 58.643 34.615 24.13 12.57 0.00 2.90
3294 3948 6.070824 ACAAAGGGATCCCAATAACAAATGAC 60.071 38.462 32.69 0.00 38.92 3.06
3302 3956 7.286775 GCAGTAATAACAAAGGGATCCCAATAA 59.713 37.037 32.69 12.83 38.92 1.40
3303 3957 6.775629 GCAGTAATAACAAAGGGATCCCAATA 59.224 38.462 32.69 16.76 38.92 1.90
3304 3958 5.598417 GCAGTAATAACAAAGGGATCCCAAT 59.402 40.000 32.69 18.18 38.92 3.16
3305 3959 4.953579 GCAGTAATAACAAAGGGATCCCAA 59.046 41.667 32.69 10.66 38.92 4.12
3306 3960 4.229582 AGCAGTAATAACAAAGGGATCCCA 59.770 41.667 32.69 11.39 38.92 4.37
3307 3961 4.580580 CAGCAGTAATAACAAAGGGATCCC 59.419 45.833 24.59 24.59 0.00 3.85
3308 3962 4.580580 CCAGCAGTAATAACAAAGGGATCC 59.419 45.833 1.92 1.92 0.00 3.36
3309 3963 5.193679 ACCAGCAGTAATAACAAAGGGATC 58.806 41.667 0.00 0.00 0.00 3.36
3310 3964 5.193099 ACCAGCAGTAATAACAAAGGGAT 57.807 39.130 0.00 0.00 0.00 3.85
3311 3965 4.650972 ACCAGCAGTAATAACAAAGGGA 57.349 40.909 0.00 0.00 0.00 4.20
3312 3966 5.944007 AGTTACCAGCAGTAATAACAAAGGG 59.056 40.000 3.07 0.00 42.81 3.95
3313 3967 7.448748 AAGTTACCAGCAGTAATAACAAAGG 57.551 36.000 3.07 0.00 42.81 3.11
3314 3968 9.744468 AAAAAGTTACCAGCAGTAATAACAAAG 57.256 29.630 3.07 0.00 42.81 2.77
3315 3969 9.522804 CAAAAAGTTACCAGCAGTAATAACAAA 57.477 29.630 3.07 0.00 42.81 2.83
3316 3970 8.688151 ACAAAAAGTTACCAGCAGTAATAACAA 58.312 29.630 3.07 0.00 42.81 2.83
3317 3971 8.228035 ACAAAAAGTTACCAGCAGTAATAACA 57.772 30.769 3.07 0.00 42.81 2.41
3318 3972 8.964150 CAACAAAAAGTTACCAGCAGTAATAAC 58.036 33.333 3.07 0.00 42.81 1.89
3319 3973 8.904834 TCAACAAAAAGTTACCAGCAGTAATAA 58.095 29.630 3.07 0.00 42.81 1.40
3320 3974 8.453238 TCAACAAAAAGTTACCAGCAGTAATA 57.547 30.769 3.07 0.00 42.81 0.98
3321 3975 7.341445 TCAACAAAAAGTTACCAGCAGTAAT 57.659 32.000 3.07 0.00 42.81 1.89
3328 3982 5.273944 GTCAGCTCAACAAAAAGTTACCAG 58.726 41.667 0.00 0.00 38.74 4.00
3630 4287 0.318441 TGAAGTTGGAGAGAGGCGTG 59.682 55.000 0.00 0.00 0.00 5.34
3633 4290 1.899142 ACTCTGAAGTTGGAGAGAGGC 59.101 52.381 13.25 0.00 38.42 4.70
3642 4299 2.618709 GTCCCCACAAACTCTGAAGTTG 59.381 50.000 0.00 0.00 45.07 3.16
3898 4558 6.016610 TGCCTACTACTCATTTTGTTTCCAAC 60.017 38.462 0.00 0.00 0.00 3.77
3914 4574 4.019919 TGTAAACGATCGTGCCTACTAC 57.980 45.455 23.51 15.40 0.00 2.73
3920 4580 3.509266 GCATGTAAACGATCGTGCC 57.491 52.632 23.51 12.91 39.69 5.01
3939 4599 2.175811 GTACGCGCCAAAAGCAGG 59.824 61.111 5.73 0.00 44.04 4.85
4304 4970 2.813474 CGCGAACCGGAGCATCAA 60.813 61.111 9.46 0.00 36.25 2.57
4393 5059 4.399395 TCGCAGCTCAGGGCCTTG 62.399 66.667 8.96 8.96 43.05 3.61
4935 5610 2.167219 CACATGACGTAGCAGCCCG 61.167 63.158 0.00 0.69 0.00 6.13
4960 5635 2.933906 GAGGTTGTTGAAGTTGTCGTCA 59.066 45.455 0.00 0.00 0.00 4.35
5195 5870 5.585445 CACGCCTATGGATACTAGTACTAGG 59.415 48.000 29.05 14.92 37.49 3.02
5209 5884 0.387367 CGCTAGCTACACGCCTATGG 60.387 60.000 13.93 0.00 40.39 2.74
5219 5894 1.080705 CCGTATGGGCGCTAGCTAC 60.081 63.158 13.93 7.06 44.37 3.58
5234 5910 4.340097 TCACCGTATATCTGAAATCACCGT 59.660 41.667 0.00 0.00 0.00 4.83
5235 5911 4.866921 TCACCGTATATCTGAAATCACCG 58.133 43.478 0.00 0.00 0.00 4.94
5236 5912 7.441157 TGAAATCACCGTATATCTGAAATCACC 59.559 37.037 0.00 0.00 0.00 4.02
5237 5913 8.365399 TGAAATCACCGTATATCTGAAATCAC 57.635 34.615 0.00 0.00 0.00 3.06
5238 5914 8.421002 TCTGAAATCACCGTATATCTGAAATCA 58.579 33.333 0.00 0.00 0.00 2.57
5239 5915 8.818141 TCTGAAATCACCGTATATCTGAAATC 57.182 34.615 0.00 0.00 0.00 2.17
5242 5918 9.860898 CATATCTGAAATCACCGTATATCTGAA 57.139 33.333 0.00 0.00 0.00 3.02
5243 5919 7.976175 GCATATCTGAAATCACCGTATATCTGA 59.024 37.037 0.00 0.00 0.00 3.27
5244 5920 7.223582 GGCATATCTGAAATCACCGTATATCTG 59.776 40.741 0.00 0.00 0.00 2.90
5245 5921 7.124901 AGGCATATCTGAAATCACCGTATATCT 59.875 37.037 0.00 0.00 0.00 1.98
5246 5922 7.223582 CAGGCATATCTGAAATCACCGTATATC 59.776 40.741 0.00 0.00 36.93 1.63
5247 5923 7.044181 CAGGCATATCTGAAATCACCGTATAT 58.956 38.462 0.00 0.00 36.93 0.86
5248 5924 6.398095 CAGGCATATCTGAAATCACCGTATA 58.602 40.000 0.00 0.00 36.93 1.47
5249 5925 5.240891 CAGGCATATCTGAAATCACCGTAT 58.759 41.667 0.00 0.00 36.93 3.06
5250 5926 4.631131 CAGGCATATCTGAAATCACCGTA 58.369 43.478 0.00 0.00 36.93 4.02
5308 5990 0.890996 GGGCGCCTATGAAATCCCAG 60.891 60.000 28.56 0.00 34.01 4.45
5323 6005 3.282157 CAATCTCATGGGCGGGCG 61.282 66.667 0.00 0.00 0.00 6.13
5385 6067 9.690913 ACTTCTCCTTGATTCAATTGATAATGA 57.309 29.630 9.40 7.08 0.00 2.57
5392 6074 9.485206 AAATCAAACTTCTCCTTGATTCAATTG 57.515 29.630 9.72 0.00 46.52 2.32
5393 6075 9.485206 CAAATCAAACTTCTCCTTGATTCAATT 57.515 29.630 9.72 0.00 46.52 2.32
5397 6079 8.355913 AGAACAAATCAAACTTCTCCTTGATTC 58.644 33.333 9.72 0.80 46.52 2.52
5429 6111 9.573133 GCAGAAATAACTTGCAAACTTGTATAT 57.427 29.630 0.00 0.00 0.00 0.86
5433 6115 5.049828 GGCAGAAATAACTTGCAAACTTGT 58.950 37.500 0.00 0.00 0.00 3.16
5444 6288 6.821388 ACTATCGAAGATGGCAGAAATAACT 58.179 36.000 0.00 0.00 45.12 2.24
5447 6291 9.778741 ATTTTACTATCGAAGATGGCAGAAATA 57.221 29.630 0.00 0.00 45.12 1.40
5460 6304 7.606456 AGCCTTCTGTTTCATTTTACTATCGAA 59.394 33.333 0.00 0.00 0.00 3.71
5527 6417 2.877975 TTCCGGACGGAGGAAGTAG 58.122 57.895 13.64 0.00 46.06 2.57
5532 6422 2.767394 TCAAATAATTCCGGACGGAGGA 59.233 45.455 13.64 0.22 46.06 3.71
5540 6430 7.241042 TCTATACCTCCTCAAATAATTCCGG 57.759 40.000 0.00 0.00 0.00 5.14
5554 6444 8.132362 CGCTGAAATAGATGTATCTATACCTCC 58.868 40.741 13.27 4.27 46.49 4.30
5555 6445 8.679100 ACGCTGAAATAGATGTATCTATACCTC 58.321 37.037 13.27 11.03 46.49 3.85
5556 6446 8.582657 ACGCTGAAATAGATGTATCTATACCT 57.417 34.615 13.27 3.71 46.49 3.08
5560 6450 8.523658 TGCTTACGCTGAAATAGATGTATCTAT 58.476 33.333 8.27 8.27 42.85 1.98
5562 6452 6.749139 TGCTTACGCTGAAATAGATGTATCT 58.251 36.000 0.00 0.00 37.73 1.98
5563 6453 7.408132 TTGCTTACGCTGAAATAGATGTATC 57.592 36.000 0.00 0.00 36.97 2.24
5564 6454 7.969536 ATTGCTTACGCTGAAATAGATGTAT 57.030 32.000 0.00 0.00 36.97 2.29
5565 6455 7.042051 GGAATTGCTTACGCTGAAATAGATGTA 60.042 37.037 0.00 0.00 36.97 2.29
5567 6457 6.138761 GGAATTGCTTACGCTGAAATAGATG 58.861 40.000 0.00 0.00 36.97 2.90
5569 6459 4.270084 CGGAATTGCTTACGCTGAAATAGA 59.730 41.667 0.00 0.00 30.64 1.98
5572 6462 2.097466 CCGGAATTGCTTACGCTGAAAT 59.903 45.455 0.00 0.00 37.38 2.17
5574 6464 1.083489 CCGGAATTGCTTACGCTGAA 58.917 50.000 0.00 0.00 37.38 3.02
5575 6465 0.248012 TCCGGAATTGCTTACGCTGA 59.752 50.000 0.00 0.00 37.38 4.26
5576 6466 0.373716 GTCCGGAATTGCTTACGCTG 59.626 55.000 5.23 0.00 37.38 5.18
5578 6468 1.347221 CGTCCGGAATTGCTTACGC 59.653 57.895 5.23 0.00 37.38 4.42
5579 6469 0.458889 TCCGTCCGGAATTGCTTACG 60.459 55.000 5.23 2.84 42.05 3.18
5580 6470 1.287425 CTCCGTCCGGAATTGCTTAC 58.713 55.000 5.23 0.00 44.66 2.34
5581 6471 0.177141 CCTCCGTCCGGAATTGCTTA 59.823 55.000 5.23 0.00 44.66 3.09
5582 6472 1.078426 CCTCCGTCCGGAATTGCTT 60.078 57.895 5.23 0.00 44.66 3.91
5583 6473 0.974010 TACCTCCGTCCGGAATTGCT 60.974 55.000 5.23 0.00 44.66 3.91
5584 6474 0.529992 CTACCTCCGTCCGGAATTGC 60.530 60.000 5.23 0.00 44.66 3.56
5585 6475 0.822164 ACTACCTCCGTCCGGAATTG 59.178 55.000 5.23 0.00 44.66 2.32
5587 6477 1.978454 CTACTACCTCCGTCCGGAAT 58.022 55.000 5.23 3.83 44.66 3.01
5589 6479 1.153086 GCTACTACCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
5590 6480 0.822532 ATGCTACTACCTCCGTCCGG 60.823 60.000 0.00 0.00 0.00 5.14
5591 6481 0.592148 GATGCTACTACCTCCGTCCG 59.408 60.000 0.00 0.00 0.00 4.79
5592 6482 0.960286 GGATGCTACTACCTCCGTCC 59.040 60.000 0.00 0.00 0.00 4.79
5593 6483 1.609555 CTGGATGCTACTACCTCCGTC 59.390 57.143 0.00 0.00 0.00 4.79
5601 6499 5.293324 CGTATTTGTTTGCTGGATGCTACTA 59.707 40.000 0.00 0.00 43.37 1.82
5743 6648 6.361899 CCCAATTGCGATTTTGTAGTTTTTG 58.638 36.000 0.00 0.00 0.00 2.44
5762 6674 1.358152 TCGAGTGAAAGGTCCCCAAT 58.642 50.000 0.00 0.00 0.00 3.16
5764 6676 2.241281 TATCGAGTGAAAGGTCCCCA 57.759 50.000 0.00 0.00 0.00 4.96
5874 6790 6.806739 GGTTGAACAATTTAAGCACCTGTATC 59.193 38.462 0.00 0.00 0.00 2.24
5936 6917 2.539750 GCGAAAATTCTTGGAGGCGATC 60.540 50.000 0.00 0.00 0.00 3.69
5990 6971 4.642437 TGGGCGCTCATGTAAAAATAATCA 59.358 37.500 5.44 0.00 0.00 2.57
6005 6986 3.454371 TCTTTACTTAGATGGGCGCTC 57.546 47.619 7.64 2.47 0.00 5.03
6061 7043 7.928167 CAGGCTTTTAGTTCCATTTTTCTCTTT 59.072 33.333 0.00 0.00 0.00 2.52
6082 7064 2.036256 GCCCACATCAACCAGGCT 59.964 61.111 0.00 0.00 40.57 4.58
6151 7137 7.569111 ACATCTTATAATAGTGAACAGAGGGGT 59.431 37.037 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.