Multiple sequence alignment - TraesCS4A01G045600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G045600 chr4A 100.000 4248 0 0 1 4248 37776785 37772538 0.000000e+00 7845.0
1 TraesCS4A01G045600 chr4D 94.203 2139 85 18 1 2117 428726694 428728815 0.000000e+00 3227.0
2 TraesCS4A01G045600 chr4D 97.553 1594 28 5 2268 3859 428728801 428730385 0.000000e+00 2717.0
3 TraesCS4A01G045600 chr4B 92.075 2145 99 36 1 2116 526727297 526725195 0.000000e+00 2953.0
4 TraesCS4A01G045600 chr4B 89.425 1409 106 24 2268 3642 526725208 526723809 0.000000e+00 1736.0
5 TraesCS4A01G045600 chr2B 88.665 397 37 3 3859 4248 91026685 91027080 1.070000e-130 477.0
6 TraesCS4A01G045600 chr2B 94.444 54 2 1 3851 3904 796840834 796840886 9.790000e-12 82.4
7 TraesCS4A01G045600 chr1B 88.804 393 31 9 3859 4248 554691396 554691778 1.790000e-128 470.0
8 TraesCS4A01G045600 chr2D 80.048 421 46 22 3856 4241 647524702 647525119 1.160000e-70 278.0
9 TraesCS4A01G045600 chr2A 79.048 420 52 19 3856 4241 772955936 772955519 5.450000e-64 255.0
10 TraesCS4A01G045600 chr2A 90.698 129 12 0 3860 3988 542781273 542781145 5.650000e-39 172.0
11 TraesCS4A01G045600 chr1A 78.385 421 55 22 3856 4241 495452957 495452538 1.530000e-59 241.0
12 TraesCS4A01G045600 chr1A 91.071 56 3 1 3854 3907 14606987 14606932 1.640000e-09 75.0
13 TraesCS4A01G045600 chr7D 87.500 88 8 1 2179 2266 416276044 416276128 9.720000e-17 99.0
14 TraesCS4A01G045600 chr7B 96.154 52 2 0 3856 3907 648042074 648042023 7.570000e-13 86.1
15 TraesCS4A01G045600 chr6B 87.302 63 6 2 3864 3925 628983625 628983686 2.120000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G045600 chr4A 37772538 37776785 4247 True 7845.0 7845 100.000 1 4248 1 chr4A.!!$R1 4247
1 TraesCS4A01G045600 chr4D 428726694 428730385 3691 False 2972.0 3227 95.878 1 3859 2 chr4D.!!$F1 3858
2 TraesCS4A01G045600 chr4B 526723809 526727297 3488 True 2344.5 2953 90.750 1 3642 2 chr4B.!!$R1 3641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1000 0.036875 CTCGGAGTGCCTTCCCTTTT 59.963 55.0 0.0 0.0 33.46 2.27 F
2151 2186 0.107654 GCTTAGTGGTAGGGGCACTG 60.108 60.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2640 2678 0.035915 GACAGGCCCAGGAAGAAGAC 60.036 60.0 0.00 0.0 0.0 3.01 R
3928 4007 0.038526 ACAATCTCGTCCTTTCGCGT 60.039 50.0 5.77 0.0 0.0 6.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.253330 TCCTTCACACTTCTGAAAGTTGTT 58.747 37.500 0.00 0.00 43.28 2.83
64 65 3.179048 GGTGTCTTTGTTTGTTGAGCAC 58.821 45.455 0.00 0.00 0.00 4.40
65 66 3.366883 GGTGTCTTTGTTTGTTGAGCACA 60.367 43.478 0.00 0.00 0.00 4.57
487 488 0.906775 CCAGGTAAACTTCCGGGCTA 59.093 55.000 0.00 0.00 34.00 3.93
502 503 1.343821 GCTACGATCAAACGCCACG 59.656 57.895 0.00 0.00 36.70 4.94
570 571 0.874175 CGCGTCATTATCCAGCCGAA 60.874 55.000 0.00 0.00 0.00 4.30
572 573 1.806623 GCGTCATTATCCAGCCGAAGT 60.807 52.381 0.00 0.00 0.00 3.01
835 836 1.964373 GGCGCTTCCCGACTCAAAA 60.964 57.895 7.64 0.00 43.29 2.44
840 841 2.774687 GCTTCCCGACTCAAAACCTTA 58.225 47.619 0.00 0.00 0.00 2.69
916 917 3.302347 CTTCGCGGAACAGCCCTCT 62.302 63.158 6.13 0.00 0.00 3.69
926 929 1.454847 CAGCCCTCTAGCTCGGACT 60.455 63.158 0.00 0.00 42.61 3.85
994 997 1.985116 GACTCGGAGTGCCTTCCCT 60.985 63.158 16.72 0.00 33.46 4.20
996 999 1.128188 ACTCGGAGTGCCTTCCCTTT 61.128 55.000 10.41 0.00 33.46 3.11
997 1000 0.036875 CTCGGAGTGCCTTCCCTTTT 59.963 55.000 0.00 0.00 33.46 2.27
1034 1047 3.544698 TGACTACTCCTCCCTGTTCTT 57.455 47.619 0.00 0.00 0.00 2.52
1039 1056 1.909986 ACTCCTCCCTGTTCTTAAGCC 59.090 52.381 0.00 0.00 0.00 4.35
1043 1060 0.328258 TCCCTGTTCTTAAGCCCAGC 59.672 55.000 13.00 0.00 0.00 4.85
1105 1122 1.064314 CGAGAGGAGGGAAGAAGAGGA 60.064 57.143 0.00 0.00 0.00 3.71
1106 1123 2.666317 GAGAGGAGGGAAGAAGAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
1198 1215 2.351244 CCGCTGGCTCAGAGGTACA 61.351 63.158 14.11 0.00 44.47 2.90
1236 1253 2.613506 CGGTTCCTGTCCGTTTGCC 61.614 63.158 0.00 0.00 42.62 4.52
1277 1294 3.366273 CGCTTGCCAAGAAATTTGCTAGA 60.366 43.478 9.04 0.00 0.00 2.43
1312 1329 4.468510 TCCCATGGTACTGAGTTCGTATTT 59.531 41.667 11.73 0.00 0.00 1.40
1408 1426 7.452880 AAATTATCTGTTGTTCTGCAAGCTA 57.547 32.000 0.00 0.00 37.83 3.32
1621 1654 2.146342 TGCTGCTGCTTACTGAAGTTC 58.854 47.619 17.00 0.00 40.48 3.01
1627 1660 4.275936 TGCTGCTTACTGAAGTTCCTTTTC 59.724 41.667 0.00 0.00 34.90 2.29
1695 1728 6.765989 TGTGAAATCCTCATTCGGGTTAATAG 59.234 38.462 0.00 0.00 36.14 1.73
1821 1855 4.081406 TCACACAAAATAGAAGCCAGCAT 58.919 39.130 0.00 0.00 0.00 3.79
1867 1901 5.396484 CAAGATCATGTCGTGAAAGCAATT 58.604 37.500 0.00 0.00 40.97 2.32
1870 1904 4.827304 TCATGTCGTGAAAGCAATTGAA 57.173 36.364 10.34 0.00 32.78 2.69
1885 1919 4.383989 GCAATTGAAGCAATTAATGGGGGA 60.384 41.667 10.34 0.00 41.40 4.81
1918 1952 4.216411 GGTGCCCACCGATACAATATAT 57.784 45.455 1.07 0.00 42.29 0.86
1948 1982 3.625649 TGTGATGCATGGTTAGTGCTA 57.374 42.857 2.46 0.00 42.92 3.49
1973 2008 7.667043 TCTTAATTTCTCTTTGCGCTAAGAA 57.333 32.000 29.16 18.38 33.96 2.52
2025 2060 6.489127 ACGTCGTTTTCATATTGATTCCAA 57.511 33.333 0.00 0.00 36.61 3.53
2129 2164 8.221965 TCAAGTTATGATAGAGAACTAAGCGA 57.778 34.615 0.00 0.00 33.13 4.93
2130 2165 8.851145 TCAAGTTATGATAGAGAACTAAGCGAT 58.149 33.333 0.00 0.00 33.13 4.58
2133 2168 8.455682 AGTTATGATAGAGAACTAAGCGATAGC 58.544 37.037 0.00 0.00 46.75 2.97
2147 2182 1.272769 CGATAGCTTAGTGGTAGGGGC 59.727 57.143 0.00 0.00 31.67 5.80
2148 2183 2.326428 GATAGCTTAGTGGTAGGGGCA 58.674 52.381 0.00 0.00 31.67 5.36
2149 2184 1.492764 TAGCTTAGTGGTAGGGGCAC 58.507 55.000 0.00 0.00 0.00 5.01
2150 2185 0.252742 AGCTTAGTGGTAGGGGCACT 60.253 55.000 0.00 0.00 0.00 4.40
2151 2186 0.107654 GCTTAGTGGTAGGGGCACTG 60.108 60.000 0.00 0.00 0.00 3.66
2152 2187 1.276622 CTTAGTGGTAGGGGCACTGT 58.723 55.000 0.00 0.00 0.00 3.55
2153 2188 1.628846 CTTAGTGGTAGGGGCACTGTT 59.371 52.381 0.00 0.00 0.00 3.16
2154 2189 1.272807 TAGTGGTAGGGGCACTGTTC 58.727 55.000 0.00 0.00 0.00 3.18
2155 2190 0.473886 AGTGGTAGGGGCACTGTTCT 60.474 55.000 0.00 0.00 0.00 3.01
2156 2191 0.321653 GTGGTAGGGGCACTGTTCTG 60.322 60.000 0.00 0.00 0.00 3.02
2157 2192 0.766674 TGGTAGGGGCACTGTTCTGT 60.767 55.000 0.00 0.00 0.00 3.41
2158 2193 0.321653 GGTAGGGGCACTGTTCTGTG 60.322 60.000 0.00 5.65 40.62 3.66
2166 2201 0.590195 CACTGTTCTGTGCTCCAAGC 59.410 55.000 0.00 0.00 42.82 4.01
2167 2202 0.536006 ACTGTTCTGTGCTCCAAGCC 60.536 55.000 0.00 0.00 41.51 4.35
2168 2203 0.535780 CTGTTCTGTGCTCCAAGCCA 60.536 55.000 0.00 0.00 41.51 4.75
2169 2204 0.535780 TGTTCTGTGCTCCAAGCCAG 60.536 55.000 9.69 9.69 41.51 4.85
2170 2205 1.601759 TTCTGTGCTCCAAGCCAGC 60.602 57.895 10.64 0.00 41.51 4.85
2171 2206 3.060615 CTGTGCTCCAAGCCAGCC 61.061 66.667 0.00 0.00 41.51 4.85
2172 2207 3.855503 CTGTGCTCCAAGCCAGCCA 62.856 63.158 0.00 0.00 41.51 4.75
2173 2208 3.060615 GTGCTCCAAGCCAGCCAG 61.061 66.667 0.00 0.00 41.51 4.85
2174 2209 4.355720 TGCTCCAAGCCAGCCAGG 62.356 66.667 0.00 0.00 41.51 4.45
2175 2210 4.357279 GCTCCAAGCCAGCCAGGT 62.357 66.667 0.00 0.00 40.61 4.00
2176 2211 2.437897 CTCCAAGCCAGCCAGGTT 59.562 61.111 0.00 0.00 40.61 3.50
2177 2212 1.676967 CTCCAAGCCAGCCAGGTTC 60.677 63.158 0.00 0.00 40.61 3.62
2178 2213 3.058160 CCAAGCCAGCCAGGTTCG 61.058 66.667 0.00 0.00 40.61 3.95
2179 2214 2.032528 CAAGCCAGCCAGGTTCGA 59.967 61.111 0.00 0.00 40.61 3.71
2180 2215 1.377725 CAAGCCAGCCAGGTTCGAT 60.378 57.895 0.00 0.00 40.61 3.59
2181 2216 1.078143 AAGCCAGCCAGGTTCGATC 60.078 57.895 0.00 0.00 40.61 3.69
2182 2217 2.514824 GCCAGCCAGGTTCGATCC 60.515 66.667 4.21 4.21 40.61 3.36
2183 2218 2.190578 CCAGCCAGGTTCGATCCC 59.809 66.667 8.95 1.08 0.00 3.85
2184 2219 2.370445 CCAGCCAGGTTCGATCCCT 61.370 63.158 8.95 3.61 0.00 4.20
2189 2224 4.382852 AGGTTCGATCCCTGAGGG 57.617 61.111 12.53 12.53 46.11 4.30
2201 2236 1.717032 CCTGAGGGGAACGGATATCA 58.283 55.000 4.83 0.00 37.23 2.15
2202 2237 2.047061 CCTGAGGGGAACGGATATCAA 58.953 52.381 4.83 0.00 37.23 2.57
2203 2238 2.224305 CCTGAGGGGAACGGATATCAAC 60.224 54.545 4.83 0.00 37.23 3.18
2204 2239 2.700897 CTGAGGGGAACGGATATCAACT 59.299 50.000 4.83 0.00 0.00 3.16
2205 2240 2.434336 TGAGGGGAACGGATATCAACTG 59.566 50.000 4.83 0.00 0.00 3.16
2206 2241 2.434702 GAGGGGAACGGATATCAACTGT 59.565 50.000 4.83 0.00 0.00 3.55
2207 2242 2.170607 AGGGGAACGGATATCAACTGTG 59.829 50.000 4.83 0.00 0.00 3.66
2208 2243 2.093128 GGGGAACGGATATCAACTGTGT 60.093 50.000 4.83 0.00 0.00 3.72
2209 2244 3.606687 GGGAACGGATATCAACTGTGTT 58.393 45.455 4.83 0.00 0.00 3.32
2210 2245 4.007659 GGGAACGGATATCAACTGTGTTT 58.992 43.478 4.83 0.00 0.00 2.83
2211 2246 4.094442 GGGAACGGATATCAACTGTGTTTC 59.906 45.833 4.83 0.00 0.00 2.78
2212 2247 4.935808 GGAACGGATATCAACTGTGTTTCT 59.064 41.667 4.83 0.00 0.00 2.52
2213 2248 5.063564 GGAACGGATATCAACTGTGTTTCTC 59.936 44.000 4.83 0.00 0.00 2.87
2214 2249 4.174009 ACGGATATCAACTGTGTTTCTCG 58.826 43.478 4.83 0.00 0.00 4.04
2215 2250 4.174009 CGGATATCAACTGTGTTTCTCGT 58.826 43.478 4.83 0.00 0.00 4.18
2216 2251 4.265556 CGGATATCAACTGTGTTTCTCGTC 59.734 45.833 4.83 0.00 0.00 4.20
2217 2252 5.411781 GGATATCAACTGTGTTTCTCGTCT 58.588 41.667 4.83 0.00 0.00 4.18
2218 2253 5.517054 GGATATCAACTGTGTTTCTCGTCTC 59.483 44.000 4.83 0.00 0.00 3.36
2219 2254 3.093717 TCAACTGTGTTTCTCGTCTCC 57.906 47.619 0.00 0.00 0.00 3.71
2220 2255 2.693591 TCAACTGTGTTTCTCGTCTCCT 59.306 45.455 0.00 0.00 0.00 3.69
2221 2256 3.053455 CAACTGTGTTTCTCGTCTCCTC 58.947 50.000 0.00 0.00 0.00 3.71
2222 2257 1.614413 ACTGTGTTTCTCGTCTCCTCC 59.386 52.381 0.00 0.00 0.00 4.30
2223 2258 1.889829 CTGTGTTTCTCGTCTCCTCCT 59.110 52.381 0.00 0.00 0.00 3.69
2224 2259 3.082548 CTGTGTTTCTCGTCTCCTCCTA 58.917 50.000 0.00 0.00 0.00 2.94
2225 2260 3.697045 CTGTGTTTCTCGTCTCCTCCTAT 59.303 47.826 0.00 0.00 0.00 2.57
2226 2261 4.851843 TGTGTTTCTCGTCTCCTCCTATA 58.148 43.478 0.00 0.00 0.00 1.31
2227 2262 5.258841 TGTGTTTCTCGTCTCCTCCTATAA 58.741 41.667 0.00 0.00 0.00 0.98
2228 2263 5.713389 TGTGTTTCTCGTCTCCTCCTATAAA 59.287 40.000 0.00 0.00 0.00 1.40
2229 2264 6.209986 TGTGTTTCTCGTCTCCTCCTATAAAA 59.790 38.462 0.00 0.00 0.00 1.52
2230 2265 7.095270 GTGTTTCTCGTCTCCTCCTATAAAAA 58.905 38.462 0.00 0.00 0.00 1.94
2231 2266 7.764901 GTGTTTCTCGTCTCCTCCTATAAAAAT 59.235 37.037 0.00 0.00 0.00 1.82
2232 2267 8.974238 TGTTTCTCGTCTCCTCCTATAAAAATA 58.026 33.333 0.00 0.00 0.00 1.40
2233 2268 9.984190 GTTTCTCGTCTCCTCCTATAAAAATAT 57.016 33.333 0.00 0.00 0.00 1.28
2234 2269 9.982651 TTTCTCGTCTCCTCCTATAAAAATATG 57.017 33.333 0.00 0.00 0.00 1.78
2235 2270 7.603651 TCTCGTCTCCTCCTATAAAAATATGC 58.396 38.462 0.00 0.00 0.00 3.14
2236 2271 6.698380 TCGTCTCCTCCTATAAAAATATGCC 58.302 40.000 0.00 0.00 0.00 4.40
2237 2272 5.577164 CGTCTCCTCCTATAAAAATATGCCG 59.423 44.000 0.00 0.00 0.00 5.69
2238 2273 6.571731 CGTCTCCTCCTATAAAAATATGCCGA 60.572 42.308 0.00 0.00 0.00 5.54
2239 2274 6.814146 GTCTCCTCCTATAAAAATATGCCGAG 59.186 42.308 0.00 0.00 0.00 4.63
2240 2275 6.049955 TCCTCCTATAAAAATATGCCGAGG 57.950 41.667 0.00 0.00 36.52 4.63
2241 2276 5.045869 TCCTCCTATAAAAATATGCCGAGGG 60.046 44.000 0.00 0.00 35.99 4.30
2242 2277 5.174037 TCCTATAAAAATATGCCGAGGGG 57.826 43.478 0.00 0.00 0.00 4.79
2258 2293 4.423209 GGCTCCTCCCCCTCTGGT 62.423 72.222 0.00 0.00 0.00 4.00
2259 2294 2.766229 GCTCCTCCCCCTCTGGTC 60.766 72.222 0.00 0.00 0.00 4.02
2260 2295 3.114390 CTCCTCCCCCTCTGGTCT 58.886 66.667 0.00 0.00 0.00 3.85
2261 2296 1.075600 CTCCTCCCCCTCTGGTCTC 60.076 68.421 0.00 0.00 0.00 3.36
2262 2297 2.443016 CCTCCCCCTCTGGTCTCG 60.443 72.222 0.00 0.00 0.00 4.04
2263 2298 2.360980 CTCCCCCTCTGGTCTCGT 59.639 66.667 0.00 0.00 0.00 4.18
2264 2299 1.305381 CTCCCCCTCTGGTCTCGTT 60.305 63.158 0.00 0.00 0.00 3.85
2265 2300 0.905337 CTCCCCCTCTGGTCTCGTTT 60.905 60.000 0.00 0.00 0.00 3.60
2266 2301 0.410663 TCCCCCTCTGGTCTCGTTTA 59.589 55.000 0.00 0.00 0.00 2.01
2267 2302 1.203212 TCCCCCTCTGGTCTCGTTTAA 60.203 52.381 0.00 0.00 0.00 1.52
2268 2303 1.626825 CCCCCTCTGGTCTCGTTTAAA 59.373 52.381 0.00 0.00 0.00 1.52
2269 2304 2.238898 CCCCCTCTGGTCTCGTTTAAAT 59.761 50.000 0.00 0.00 0.00 1.40
2270 2305 3.532542 CCCCTCTGGTCTCGTTTAAATC 58.467 50.000 0.00 0.00 0.00 2.17
2271 2306 3.055385 CCCCTCTGGTCTCGTTTAAATCA 60.055 47.826 0.00 0.00 0.00 2.57
2272 2307 4.564821 CCCCTCTGGTCTCGTTTAAATCAA 60.565 45.833 0.00 0.00 0.00 2.57
2273 2308 4.631813 CCCTCTGGTCTCGTTTAAATCAAG 59.368 45.833 0.00 0.00 0.00 3.02
2274 2309 5.238583 CCTCTGGTCTCGTTTAAATCAAGT 58.761 41.667 0.00 0.00 0.00 3.16
2275 2310 5.701290 CCTCTGGTCTCGTTTAAATCAAGTT 59.299 40.000 0.00 0.00 0.00 2.66
2640 2678 1.410153 GCCCCATGGTTTGCTTCATAG 59.590 52.381 11.73 0.00 0.00 2.23
2708 2746 8.880750 GGGATACTACACTACATTTCAGTTTTC 58.119 37.037 0.00 0.00 0.00 2.29
2940 2978 3.139077 GTCAGTGTCAAAGATTTCGGGT 58.861 45.455 0.00 0.00 0.00 5.28
2945 2983 5.063944 CAGTGTCAAAGATTTCGGGTATCTG 59.936 44.000 0.00 0.00 32.82 2.90
3040 3078 5.657302 ACCTAATAACACCAGGAGTCTACAG 59.343 44.000 0.00 0.00 33.44 2.74
3078 3116 5.065346 GGAAGGTAAGCTCAAGAATAGCAAC 59.935 44.000 0.00 0.00 42.62 4.17
3173 3241 5.396484 CAAATTGACTTGAATCGCTGACAT 58.604 37.500 0.00 0.00 0.00 3.06
3358 3427 6.534793 ACTGTAACTTTTTGGTTGAAGCATTG 59.465 34.615 0.00 0.00 0.00 2.82
3528 3597 6.611236 TGAGAACCTGAGATGGATTATGTGTA 59.389 38.462 0.00 0.00 0.00 2.90
3529 3598 7.060383 AGAACCTGAGATGGATTATGTGTAG 57.940 40.000 0.00 0.00 0.00 2.74
3530 3599 6.841229 AGAACCTGAGATGGATTATGTGTAGA 59.159 38.462 0.00 0.00 0.00 2.59
3531 3600 6.412362 ACCTGAGATGGATTATGTGTAGAC 57.588 41.667 0.00 0.00 0.00 2.59
3633 3710 2.949451 TTGTTTGGAACGCAACATGT 57.051 40.000 0.00 0.00 34.71 3.21
3642 3719 4.158384 GGAACGCAACATGTACTTCATTG 58.842 43.478 0.00 0.00 34.09 2.82
3665 3744 6.640518 TGAAGTTTCTTAGCCATAGTGGTAG 58.359 40.000 0.00 0.00 40.46 3.18
3700 3779 0.815615 CTTGGCATCTAGGGCGTTCC 60.816 60.000 0.00 0.00 35.84 3.62
3798 3877 8.154649 ACAATAGTTGACTACTTTTCCAACAG 57.845 34.615 0.00 0.00 40.77 3.16
3807 3886 7.065803 TGACTACTTTTCCAACAGAAGTTTGAG 59.934 37.037 0.00 0.00 35.28 3.02
3813 3892 6.500684 TTCCAACAGAAGTTTGAGATATGC 57.499 37.500 0.00 0.00 35.28 3.14
3843 3922 0.620556 ACAGATCGACCAAAGCCCAT 59.379 50.000 0.00 0.00 0.00 4.00
3859 3938 4.718961 AGCCCATTGCCTGTAGTATTTAG 58.281 43.478 0.00 0.00 42.71 1.85
3860 3939 3.821033 GCCCATTGCCTGTAGTATTTAGG 59.179 47.826 0.00 0.00 34.67 2.69
3869 3948 6.086785 CCTGTAGTATTTAGGCCAGTACTC 57.913 45.833 5.01 3.19 0.00 2.59
3870 3949 5.834204 CCTGTAGTATTTAGGCCAGTACTCT 59.166 44.000 5.01 0.00 0.00 3.24
3871 3950 6.239064 CCTGTAGTATTTAGGCCAGTACTCTG 60.239 46.154 5.01 6.06 41.01 3.35
3872 3951 4.674281 AGTATTTAGGCCAGTACTCTGC 57.326 45.455 5.01 5.51 40.09 4.26
3873 3952 2.604046 ATTTAGGCCAGTACTCTGCG 57.396 50.000 5.01 0.00 40.09 5.18
3874 3953 0.108329 TTTAGGCCAGTACTCTGCGC 60.108 55.000 5.01 0.00 40.09 6.09
3894 3973 4.371590 GCGCACCGGCCCAAATTT 62.372 61.111 0.30 0.00 36.38 1.82
3895 3974 2.432285 CGCACCGGCCCAAATTTG 60.432 61.111 11.40 11.40 36.38 2.32
3906 3985 3.792716 CAAATTTGGACCGGTCTGC 57.207 52.632 32.52 18.41 0.00 4.26
3907 3986 1.247567 CAAATTTGGACCGGTCTGCT 58.752 50.000 32.52 13.34 0.00 4.24
3908 3987 1.068333 CAAATTTGGACCGGTCTGCTG 60.068 52.381 32.52 17.28 0.00 4.41
3909 3988 1.244019 AATTTGGACCGGTCTGCTGC 61.244 55.000 32.52 16.93 0.00 5.25
3910 3989 3.842925 TTTGGACCGGTCTGCTGCC 62.843 63.158 32.52 17.26 0.00 4.85
3922 4001 3.567797 GCTGCCGAGCGTTGGATC 61.568 66.667 0.00 0.00 34.87 3.36
3923 4002 2.185350 CTGCCGAGCGTTGGATCT 59.815 61.111 0.00 0.00 0.00 2.75
3924 4003 2.125552 TGCCGAGCGTTGGATCTG 60.126 61.111 0.00 0.00 0.00 2.90
3925 4004 3.567797 GCCGAGCGTTGGATCTGC 61.568 66.667 0.00 0.00 31.86 4.26
3926 4005 2.125552 CCGAGCGTTGGATCTGCA 60.126 61.111 0.00 0.00 0.00 4.41
3927 4006 1.741401 CCGAGCGTTGGATCTGCAA 60.741 57.895 0.00 0.00 0.00 4.08
3928 4007 1.298157 CCGAGCGTTGGATCTGCAAA 61.298 55.000 0.00 0.00 0.00 3.68
3929 4008 0.179215 CGAGCGTTGGATCTGCAAAC 60.179 55.000 0.00 0.00 0.00 2.93
3931 4010 4.440214 CGTTGGATCTGCAAACGC 57.560 55.556 7.59 0.00 40.02 4.84
3932 4011 1.509787 CGTTGGATCTGCAAACGCG 60.510 57.895 3.53 3.53 40.02 6.01
3933 4012 1.866237 GTTGGATCTGCAAACGCGA 59.134 52.632 15.93 0.00 0.00 5.87
3934 4013 0.237235 GTTGGATCTGCAAACGCGAA 59.763 50.000 15.93 0.00 0.00 4.70
3935 4014 0.947960 TTGGATCTGCAAACGCGAAA 59.052 45.000 15.93 0.00 0.00 3.46
3936 4015 0.516877 TGGATCTGCAAACGCGAAAG 59.483 50.000 15.93 2.00 0.00 2.62
3937 4016 0.179189 GGATCTGCAAACGCGAAAGG 60.179 55.000 15.93 0.00 0.00 3.11
3938 4017 0.796312 GATCTGCAAACGCGAAAGGA 59.204 50.000 15.93 1.21 0.00 3.36
3939 4018 0.517316 ATCTGCAAACGCGAAAGGAC 59.483 50.000 15.93 0.00 0.00 3.85
3940 4019 1.438710 CTGCAAACGCGAAAGGACG 60.439 57.895 15.93 0.00 0.00 4.79
3941 4020 1.827315 CTGCAAACGCGAAAGGACGA 61.827 55.000 15.93 0.00 35.09 4.20
3942 4021 1.154654 GCAAACGCGAAAGGACGAG 60.155 57.895 15.93 0.00 38.84 4.18
3943 4022 1.554042 GCAAACGCGAAAGGACGAGA 61.554 55.000 15.93 0.00 36.92 4.04
3944 4023 1.068474 CAAACGCGAAAGGACGAGAT 58.932 50.000 15.93 0.00 36.92 2.75
3945 4024 1.459592 CAAACGCGAAAGGACGAGATT 59.540 47.619 15.93 0.00 36.92 2.40
3946 4025 1.068474 AACGCGAAAGGACGAGATTG 58.932 50.000 15.93 0.00 36.92 2.67
3947 4026 0.038526 ACGCGAAAGGACGAGATTGT 60.039 50.000 15.93 0.00 36.92 2.71
3948 4027 0.640768 CGCGAAAGGACGAGATTGTC 59.359 55.000 0.00 0.00 38.17 3.18
3956 4035 4.162640 CGAGATTGTCGCGACCAA 57.837 55.556 34.34 26.64 42.24 3.67
3957 4036 1.991430 CGAGATTGTCGCGACCAAG 59.009 57.895 34.34 16.53 42.24 3.61
3958 4037 0.732880 CGAGATTGTCGCGACCAAGT 60.733 55.000 34.34 17.90 42.24 3.16
3959 4038 0.992802 GAGATTGTCGCGACCAAGTC 59.007 55.000 34.34 24.44 0.00 3.01
3960 4039 0.317160 AGATTGTCGCGACCAAGTCA 59.683 50.000 34.34 13.82 32.09 3.41
3961 4040 1.066858 AGATTGTCGCGACCAAGTCAT 60.067 47.619 34.34 16.87 32.09 3.06
3962 4041 1.324736 GATTGTCGCGACCAAGTCATC 59.675 52.381 34.34 20.53 32.09 2.92
3963 4042 0.317160 TTGTCGCGACCAAGTCATCT 59.683 50.000 34.34 0.00 32.09 2.90
3964 4043 0.317160 TGTCGCGACCAAGTCATCTT 59.683 50.000 34.34 0.00 32.09 2.40
3965 4044 0.992802 GTCGCGACCAAGTCATCTTC 59.007 55.000 28.61 0.00 32.09 2.87
3966 4045 0.888619 TCGCGACCAAGTCATCTTCT 59.111 50.000 3.71 0.00 32.09 2.85
3967 4046 1.272490 TCGCGACCAAGTCATCTTCTT 59.728 47.619 3.71 0.00 32.09 2.52
3968 4047 1.656095 CGCGACCAAGTCATCTTCTTC 59.344 52.381 0.00 0.00 32.09 2.87
3969 4048 2.003301 GCGACCAAGTCATCTTCTTCC 58.997 52.381 0.00 0.00 32.09 3.46
3970 4049 2.354203 GCGACCAAGTCATCTTCTTCCT 60.354 50.000 0.00 0.00 32.09 3.36
3971 4050 3.866449 GCGACCAAGTCATCTTCTTCCTT 60.866 47.826 0.00 0.00 32.09 3.36
3972 4051 3.929610 CGACCAAGTCATCTTCTTCCTTC 59.070 47.826 0.00 0.00 32.09 3.46
3973 4052 4.257731 GACCAAGTCATCTTCTTCCTTCC 58.742 47.826 0.00 0.00 32.09 3.46
3974 4053 3.265791 CCAAGTCATCTTCTTCCTTCCG 58.734 50.000 0.00 0.00 0.00 4.30
3975 4054 3.307059 CCAAGTCATCTTCTTCCTTCCGT 60.307 47.826 0.00 0.00 0.00 4.69
3976 4055 3.601443 AGTCATCTTCTTCCTTCCGTG 57.399 47.619 0.00 0.00 0.00 4.94
3977 4056 2.003301 GTCATCTTCTTCCTTCCGTGC 58.997 52.381 0.00 0.00 0.00 5.34
3978 4057 1.623311 TCATCTTCTTCCTTCCGTGCA 59.377 47.619 0.00 0.00 0.00 4.57
3979 4058 1.734465 CATCTTCTTCCTTCCGTGCAC 59.266 52.381 6.82 6.82 0.00 4.57
3980 4059 0.756294 TCTTCTTCCTTCCGTGCACA 59.244 50.000 18.64 0.00 0.00 4.57
3981 4060 0.868406 CTTCTTCCTTCCGTGCACAC 59.132 55.000 18.64 0.00 0.00 3.82
3991 4070 3.010767 GTGCACACGCGAACAGAA 58.989 55.556 15.93 0.00 42.97 3.02
3992 4071 1.350319 GTGCACACGCGAACAGAAA 59.650 52.632 15.93 0.00 42.97 2.52
3993 4072 0.247894 GTGCACACGCGAACAGAAAA 60.248 50.000 15.93 0.00 42.97 2.29
3994 4073 0.448197 TGCACACGCGAACAGAAAAA 59.552 45.000 15.93 0.00 42.97 1.94
3995 4074 1.064803 TGCACACGCGAACAGAAAAAT 59.935 42.857 15.93 0.00 42.97 1.82
3996 4075 2.288186 TGCACACGCGAACAGAAAAATA 59.712 40.909 15.93 0.00 42.97 1.40
3997 4076 2.902484 GCACACGCGAACAGAAAAATAG 59.098 45.455 15.93 0.00 0.00 1.73
3998 4077 3.363575 GCACACGCGAACAGAAAAATAGA 60.364 43.478 15.93 0.00 0.00 1.98
3999 4078 4.669197 GCACACGCGAACAGAAAAATAGAT 60.669 41.667 15.93 0.00 0.00 1.98
4000 4079 5.015733 CACACGCGAACAGAAAAATAGATC 58.984 41.667 15.93 0.00 0.00 2.75
4001 4080 4.929808 ACACGCGAACAGAAAAATAGATCT 59.070 37.500 15.93 0.00 0.00 2.75
4002 4081 5.062308 ACACGCGAACAGAAAAATAGATCTC 59.938 40.000 15.93 0.00 0.00 2.75
4003 4082 4.567159 ACGCGAACAGAAAAATAGATCTCC 59.433 41.667 15.93 0.00 0.00 3.71
4004 4083 4.317418 CGCGAACAGAAAAATAGATCTCCG 60.317 45.833 0.00 0.00 0.00 4.63
4005 4084 4.551024 GCGAACAGAAAAATAGATCTCCGC 60.551 45.833 0.00 0.00 0.00 5.54
4006 4085 4.025647 CGAACAGAAAAATAGATCTCCGCC 60.026 45.833 0.00 0.00 0.00 6.13
4007 4086 3.458189 ACAGAAAAATAGATCTCCGCCG 58.542 45.455 0.00 0.00 0.00 6.46
4008 4087 2.802816 CAGAAAAATAGATCTCCGCCGG 59.197 50.000 0.00 0.00 0.00 6.13
4009 4088 2.434702 AGAAAAATAGATCTCCGCCGGT 59.565 45.455 1.63 0.00 0.00 5.28
4010 4089 3.640029 AGAAAAATAGATCTCCGCCGGTA 59.360 43.478 1.63 0.00 0.00 4.02
4011 4090 4.100498 AGAAAAATAGATCTCCGCCGGTAA 59.900 41.667 1.63 0.00 0.00 2.85
4012 4091 3.662247 AAATAGATCTCCGCCGGTAAG 57.338 47.619 1.63 0.00 0.00 2.34
4013 4092 0.889306 ATAGATCTCCGCCGGTAAGC 59.111 55.000 1.63 0.00 0.00 3.09
4014 4093 1.177256 TAGATCTCCGCCGGTAAGCC 61.177 60.000 1.63 0.00 0.00 4.35
4015 4094 2.444140 ATCTCCGCCGGTAAGCCT 60.444 61.111 1.63 0.00 0.00 4.58
4016 4095 2.423290 GATCTCCGCCGGTAAGCCTC 62.423 65.000 1.63 0.00 0.00 4.70
4017 4096 2.930777 ATCTCCGCCGGTAAGCCTCT 62.931 60.000 1.63 0.00 0.00 3.69
4018 4097 2.682494 TCCGCCGGTAAGCCTCTT 60.682 61.111 1.63 0.00 0.00 2.85
4019 4098 2.202892 CCGCCGGTAAGCCTCTTC 60.203 66.667 1.90 0.00 0.00 2.87
4020 4099 2.582498 CGCCGGTAAGCCTCTTCG 60.582 66.667 1.90 0.00 0.00 3.79
4021 4100 2.202892 GCCGGTAAGCCTCTTCGG 60.203 66.667 1.90 0.00 43.13 4.30
4022 4101 3.015312 GCCGGTAAGCCTCTTCGGT 62.015 63.158 1.90 0.00 42.35 4.69
4023 4102 1.141234 CCGGTAAGCCTCTTCGGTC 59.859 63.158 0.00 0.00 36.38 4.79
4024 4103 1.141234 CGGTAAGCCTCTTCGGTCC 59.859 63.158 0.00 0.00 34.25 4.46
4025 4104 1.321074 CGGTAAGCCTCTTCGGTCCT 61.321 60.000 0.00 0.00 34.25 3.85
4026 4105 0.903236 GGTAAGCCTCTTCGGTCCTT 59.097 55.000 0.00 0.00 34.25 3.36
4027 4106 1.405661 GGTAAGCCTCTTCGGTCCTTG 60.406 57.143 0.00 0.00 34.25 3.61
4028 4107 0.902531 TAAGCCTCTTCGGTCCTTGG 59.097 55.000 0.00 0.00 34.25 3.61
4029 4108 2.436824 GCCTCTTCGGTCCTTGGC 60.437 66.667 0.00 0.00 34.25 4.52
4030 4109 2.960688 GCCTCTTCGGTCCTTGGCT 61.961 63.158 0.00 0.00 37.58 4.75
4031 4110 1.078848 CCTCTTCGGTCCTTGGCTG 60.079 63.158 0.00 0.00 0.00 4.85
4032 4111 1.743252 CTCTTCGGTCCTTGGCTGC 60.743 63.158 0.00 0.00 0.00 5.25
4033 4112 2.177594 CTCTTCGGTCCTTGGCTGCT 62.178 60.000 0.00 0.00 0.00 4.24
4034 4113 2.032528 TTCGGTCCTTGGCTGCTG 59.967 61.111 0.00 0.00 0.00 4.41
4035 4114 4.704833 TCGGTCCTTGGCTGCTGC 62.705 66.667 7.10 7.10 38.76 5.25
4097 4176 4.710167 TGCTCACCGCATGCAGCT 62.710 61.111 23.40 1.49 45.47 4.24
4098 4177 3.873883 GCTCACCGCATGCAGCTC 61.874 66.667 19.57 0.00 42.61 4.09
4099 4178 3.200593 CTCACCGCATGCAGCTCC 61.201 66.667 19.57 0.00 42.61 4.70
4116 4195 4.992511 CGTCGGGCCGGTCCAAAA 62.993 66.667 27.89 6.84 36.21 2.44
4117 4196 2.595172 GTCGGGCCGGTCCAAAAA 60.595 61.111 27.89 3.80 36.21 1.94
4118 4197 2.281900 TCGGGCCGGTCCAAAAAG 60.282 61.111 27.89 8.47 36.21 2.27
4119 4198 3.370231 CGGGCCGGTCCAAAAAGG 61.370 66.667 27.89 2.84 36.21 3.11
4120 4199 2.116556 GGGCCGGTCCAAAAAGGA 59.883 61.111 23.50 0.00 46.75 3.36
4134 4213 5.891551 TCCAAAAAGGAAATATGTCCCTAGC 59.108 40.000 8.45 0.00 45.65 3.42
4135 4214 5.893824 CCAAAAAGGAAATATGTCCCTAGCT 59.106 40.000 8.45 0.00 41.22 3.32
4136 4215 6.039829 CCAAAAAGGAAATATGTCCCTAGCTC 59.960 42.308 8.45 0.00 41.22 4.09
4137 4216 4.984146 AAGGAAATATGTCCCTAGCTCC 57.016 45.455 8.45 0.00 38.59 4.70
4138 4217 2.900546 AGGAAATATGTCCCTAGCTCCG 59.099 50.000 8.45 0.00 38.59 4.63
4139 4218 2.633481 GGAAATATGTCCCTAGCTCCGT 59.367 50.000 0.00 0.00 0.00 4.69
4140 4219 3.306156 GGAAATATGTCCCTAGCTCCGTC 60.306 52.174 0.00 0.00 0.00 4.79
4141 4220 1.535833 ATATGTCCCTAGCTCCGTCG 58.464 55.000 0.00 0.00 0.00 5.12
4142 4221 0.471191 TATGTCCCTAGCTCCGTCGA 59.529 55.000 0.00 0.00 0.00 4.20
4143 4222 0.820074 ATGTCCCTAGCTCCGTCGAG 60.820 60.000 0.00 0.00 39.33 4.04
4155 4234 4.148825 GTCGAGCCGGGCATGTCT 62.149 66.667 23.09 0.00 0.00 3.41
4156 4235 3.838271 TCGAGCCGGGCATGTCTC 61.838 66.667 23.09 8.51 0.00 3.36
4157 4236 4.899239 CGAGCCGGGCATGTCTCC 62.899 72.222 23.09 0.09 0.00 3.71
4158 4237 4.554036 GAGCCGGGCATGTCTCCC 62.554 72.222 23.09 0.00 40.43 4.30
4161 4240 4.489771 CCGGGCATGTCTCCCACC 62.490 72.222 7.56 0.00 44.11 4.61
4162 4241 4.489771 CGGGCATGTCTCCCACCC 62.490 72.222 7.56 0.47 44.11 4.61
4163 4242 4.129148 GGGCATGTCTCCCACCCC 62.129 72.222 0.00 0.00 43.37 4.95
4164 4243 3.017581 GGCATGTCTCCCACCCCT 61.018 66.667 0.00 0.00 0.00 4.79
4165 4244 2.273449 GCATGTCTCCCACCCCTG 59.727 66.667 0.00 0.00 0.00 4.45
4166 4245 3.001514 CATGTCTCCCACCCCTGG 58.998 66.667 0.00 0.00 37.29 4.45
4167 4246 1.925455 CATGTCTCCCACCCCTGGT 60.925 63.158 0.00 0.00 35.46 4.00
4168 4247 1.151587 ATGTCTCCCACCCCTGGTT 60.152 57.895 0.00 0.00 35.46 3.67
4169 4248 1.500783 ATGTCTCCCACCCCTGGTTG 61.501 60.000 0.00 0.00 35.46 3.77
4170 4249 3.256960 TCTCCCACCCCTGGTTGC 61.257 66.667 0.00 0.00 35.46 4.17
4171 4250 3.579302 CTCCCACCCCTGGTTGCA 61.579 66.667 0.00 0.00 35.46 4.08
4172 4251 3.574074 CTCCCACCCCTGGTTGCAG 62.574 68.421 0.00 0.00 35.46 4.41
4174 4253 4.601794 CCACCCCTGGTTGCAGCA 62.602 66.667 2.05 0.00 31.02 4.41
4175 4254 3.297620 CACCCCTGGTTGCAGCAC 61.298 66.667 2.05 0.00 31.02 4.40
4176 4255 4.603535 ACCCCTGGTTGCAGCACC 62.604 66.667 2.05 1.07 37.34 5.01
4188 4267 3.699894 AGCACCGCTGAGTGAGGG 61.700 66.667 0.00 0.00 40.34 4.30
4189 4268 4.008933 GCACCGCTGAGTGAGGGT 62.009 66.667 0.00 0.00 40.34 4.34
4190 4269 2.743718 CACCGCTGAGTGAGGGTT 59.256 61.111 0.00 0.00 40.34 4.11
4191 4270 1.374758 CACCGCTGAGTGAGGGTTC 60.375 63.158 0.00 0.00 40.34 3.62
4192 4271 2.266055 CCGCTGAGTGAGGGTTCC 59.734 66.667 0.00 0.00 32.60 3.62
4193 4272 2.583441 CCGCTGAGTGAGGGTTCCA 61.583 63.158 0.00 0.00 32.60 3.53
4194 4273 1.079543 CGCTGAGTGAGGGTTCCAG 60.080 63.158 0.00 0.00 0.00 3.86
4195 4274 1.376553 GCTGAGTGAGGGTTCCAGC 60.377 63.158 0.00 0.00 42.52 4.85
4196 4275 2.061220 CTGAGTGAGGGTTCCAGCA 58.939 57.895 0.00 0.00 0.00 4.41
4197 4276 0.617413 CTGAGTGAGGGTTCCAGCAT 59.383 55.000 0.00 0.00 0.00 3.79
4198 4277 0.615331 TGAGTGAGGGTTCCAGCATC 59.385 55.000 0.00 0.00 0.00 3.91
4199 4278 0.460987 GAGTGAGGGTTCCAGCATCG 60.461 60.000 0.00 0.00 0.00 3.84
4200 4279 1.194781 AGTGAGGGTTCCAGCATCGT 61.195 55.000 0.00 0.00 0.00 3.73
4201 4280 0.741221 GTGAGGGTTCCAGCATCGTC 60.741 60.000 0.00 0.00 0.00 4.20
4202 4281 1.519455 GAGGGTTCCAGCATCGTCG 60.519 63.158 0.00 0.00 0.00 5.12
4203 4282 3.195698 GGGTTCCAGCATCGTCGC 61.196 66.667 0.00 0.00 0.00 5.19
4204 4283 2.434185 GGTTCCAGCATCGTCGCA 60.434 61.111 1.90 0.00 0.00 5.10
4205 4284 2.456119 GGTTCCAGCATCGTCGCAG 61.456 63.158 1.90 0.00 0.00 5.18
4206 4285 2.815211 TTCCAGCATCGTCGCAGC 60.815 61.111 1.90 1.14 0.00 5.25
4207 4286 4.819761 TCCAGCATCGTCGCAGCC 62.820 66.667 5.32 0.00 0.00 4.85
4220 4299 4.467084 CAGCCCACCGCCGTACAT 62.467 66.667 0.00 0.00 38.78 2.29
4221 4300 4.467084 AGCCCACCGCCGTACATG 62.467 66.667 0.00 0.00 38.78 3.21
4224 4303 4.769063 CCACCGCCGTACATGCCA 62.769 66.667 0.00 0.00 0.00 4.92
4225 4304 3.496131 CACCGCCGTACATGCCAC 61.496 66.667 0.00 0.00 0.00 5.01
4233 4312 4.481617 TACATGCCACGCGCCCAT 62.482 61.111 5.73 3.07 36.24 4.00
4246 4325 3.592814 CCCATCGCAGCAGGCATG 61.593 66.667 0.00 0.00 45.17 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.642437 TGCTCAACAAACAAAGACACCATA 59.358 37.500 0.00 0.00 0.00 2.74
78 79 2.487934 GAAGTCAGCAGCAACAAGAGA 58.512 47.619 0.00 0.00 0.00 3.10
487 488 2.025418 GGTCGTGGCGTTTGATCGT 61.025 57.895 0.00 0.00 0.00 3.73
502 503 1.600916 GTGCAGGGGACTTGTGGTC 60.601 63.158 0.00 0.00 40.21 4.02
822 823 4.338964 GGTTTTAAGGTTTTGAGTCGGGAA 59.661 41.667 0.00 0.00 0.00 3.97
835 836 0.609662 TCGCGCTAGGGTTTTAAGGT 59.390 50.000 5.56 0.00 0.00 3.50
916 917 1.994507 GCTCTGCGAAGTCCGAGCTA 61.995 60.000 0.00 0.00 44.04 3.32
926 929 2.994995 TTCCGGGAGCTCTGCGAA 60.995 61.111 14.64 9.46 0.00 4.70
1019 1032 1.909986 GGCTTAAGAACAGGGAGGAGT 59.090 52.381 6.67 0.00 0.00 3.85
1039 1056 1.066286 CAGAGGAACAGGAGAAGCTGG 60.066 57.143 0.00 0.00 0.00 4.85
1043 1060 1.135141 CGAGCAGAGGAACAGGAGAAG 60.135 57.143 0.00 0.00 0.00 2.85
1105 1122 2.739996 CCTGCATCTTCCCCGCTCT 61.740 63.158 0.00 0.00 0.00 4.09
1106 1123 2.203126 CCTGCATCTTCCCCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
1198 1215 2.869801 CGCAGAGACGAAGAGAGATACT 59.130 50.000 0.00 0.00 34.06 2.12
1356 1373 3.193267 GCAAGTCCCAGCAATCATGTTAA 59.807 43.478 0.00 0.00 0.00 2.01
1367 1384 8.887717 CAGATAATTTATATAGCAAGTCCCAGC 58.112 37.037 0.00 0.00 0.00 4.85
1428 1446 9.281371 ACAGACAATATACTACTATCGCAAGTA 57.719 33.333 0.00 0.00 39.48 2.24
1429 1447 8.167605 ACAGACAATATACTACTATCGCAAGT 57.832 34.615 0.00 0.00 39.48 3.16
1565 1597 9.128107 CGAAAATAGCAACAGACAATTTATGTT 57.872 29.630 0.00 0.00 44.12 2.71
1621 1654 4.589216 TTTTCATGTGCTCCAGAAAAGG 57.411 40.909 9.84 0.00 35.68 3.11
1627 1660 7.894376 AACAAATATTTTTCATGTGCTCCAG 57.106 32.000 0.00 0.00 0.00 3.86
1821 1855 4.572909 CGATGCTGGAAGAATATGATCCA 58.427 43.478 4.77 4.77 40.84 3.41
1867 1901 3.464720 TGTCCCCCATTAATTGCTTCA 57.535 42.857 0.00 0.00 0.00 3.02
1870 1904 3.099141 CACTTGTCCCCCATTAATTGCT 58.901 45.455 0.00 0.00 0.00 3.91
1885 1919 2.742372 GGCACCGCGATCACTTGT 60.742 61.111 8.23 0.00 0.00 3.16
1918 1952 1.001068 CATGCATCACAAGCAAACCCA 59.999 47.619 0.00 0.00 46.27 4.51
1948 1982 7.849804 TCTTAGCGCAAAGAGAAATTAAGAT 57.150 32.000 11.47 0.00 31.85 2.40
2025 2060 3.128589 CACCACTGCGGCAAGTTATAATT 59.871 43.478 3.44 0.00 39.03 1.40
2030 2065 2.258013 GCACCACTGCGGCAAGTTA 61.258 57.895 3.44 0.00 39.03 2.24
2126 2161 1.272769 CCCCTACCACTAAGCTATCGC 59.727 57.143 0.00 0.00 0.00 4.58
2127 2162 1.272769 GCCCCTACCACTAAGCTATCG 59.727 57.143 0.00 0.00 0.00 2.92
2128 2163 2.037381 GTGCCCCTACCACTAAGCTATC 59.963 54.545 0.00 0.00 0.00 2.08
2129 2164 2.047830 GTGCCCCTACCACTAAGCTAT 58.952 52.381 0.00 0.00 0.00 2.97
2130 2165 1.007963 AGTGCCCCTACCACTAAGCTA 59.992 52.381 0.00 0.00 41.47 3.32
2131 2166 0.252742 AGTGCCCCTACCACTAAGCT 60.253 55.000 0.00 0.00 41.47 3.74
2132 2167 0.107654 CAGTGCCCCTACCACTAAGC 60.108 60.000 0.00 0.00 41.34 3.09
2133 2168 1.276622 ACAGTGCCCCTACCACTAAG 58.723 55.000 0.00 0.00 41.34 2.18
2134 2169 1.626825 GAACAGTGCCCCTACCACTAA 59.373 52.381 0.00 0.00 41.34 2.24
2135 2170 1.203262 AGAACAGTGCCCCTACCACTA 60.203 52.381 0.00 0.00 41.34 2.74
2136 2171 0.473886 AGAACAGTGCCCCTACCACT 60.474 55.000 0.00 0.00 43.92 4.00
2137 2172 0.321653 CAGAACAGTGCCCCTACCAC 60.322 60.000 0.00 0.00 0.00 4.16
2138 2173 0.766674 ACAGAACAGTGCCCCTACCA 60.767 55.000 0.00 0.00 0.00 3.25
2139 2174 0.321653 CACAGAACAGTGCCCCTACC 60.322 60.000 0.00 0.00 32.04 3.18
2140 2175 3.233355 CACAGAACAGTGCCCCTAC 57.767 57.895 0.00 0.00 32.04 3.18
2147 2182 0.590195 GCTTGGAGCACAGAACAGTG 59.410 55.000 0.00 0.00 41.89 3.66
2148 2183 0.536006 GGCTTGGAGCACAGAACAGT 60.536 55.000 2.04 0.00 44.75 3.55
2149 2184 0.535780 TGGCTTGGAGCACAGAACAG 60.536 55.000 2.04 0.00 44.75 3.16
2150 2185 0.535780 CTGGCTTGGAGCACAGAACA 60.536 55.000 10.82 0.00 44.75 3.18
2151 2186 1.860484 GCTGGCTTGGAGCACAGAAC 61.860 60.000 17.02 3.17 44.75 3.01
2152 2187 1.601759 GCTGGCTTGGAGCACAGAA 60.602 57.895 17.02 0.00 44.75 3.02
2153 2188 2.033141 GCTGGCTTGGAGCACAGA 59.967 61.111 17.02 0.00 44.75 3.41
2154 2189 3.060615 GGCTGGCTTGGAGCACAG 61.061 66.667 11.56 11.56 44.75 3.66
2155 2190 3.855503 CTGGCTGGCTTGGAGCACA 62.856 63.158 2.00 0.00 44.75 4.57
2156 2191 3.060615 CTGGCTGGCTTGGAGCAC 61.061 66.667 2.00 0.00 44.75 4.40
2157 2192 4.355720 CCTGGCTGGCTTGGAGCA 62.356 66.667 2.00 0.00 44.75 4.26
2158 2193 3.875510 AACCTGGCTGGCTTGGAGC 62.876 63.158 10.71 0.00 41.46 4.70
2159 2194 1.676967 GAACCTGGCTGGCTTGGAG 60.677 63.158 10.71 0.77 40.22 3.86
2160 2195 2.436109 GAACCTGGCTGGCTTGGA 59.564 61.111 10.71 0.00 40.22 3.53
2161 2196 2.826777 ATCGAACCTGGCTGGCTTGG 62.827 60.000 10.71 7.48 40.22 3.61
2162 2197 1.372087 GATCGAACCTGGCTGGCTTG 61.372 60.000 10.71 2.33 40.22 4.01
2163 2198 1.078143 GATCGAACCTGGCTGGCTT 60.078 57.895 10.71 4.28 40.22 4.35
2164 2199 2.586792 GATCGAACCTGGCTGGCT 59.413 61.111 10.71 0.00 40.22 4.75
2165 2200 2.514824 GGATCGAACCTGGCTGGC 60.515 66.667 10.71 0.00 40.22 4.85
2166 2201 2.190578 GGGATCGAACCTGGCTGG 59.809 66.667 11.90 9.11 42.93 4.85
2167 2202 3.313874 AGGGATCGAACCTGGCTG 58.686 61.111 11.90 0.00 36.85 4.85
2182 2217 1.717032 TGATATCCGTTCCCCTCAGG 58.283 55.000 0.00 0.00 0.00 3.86
2183 2218 2.700897 AGTTGATATCCGTTCCCCTCAG 59.299 50.000 0.00 0.00 0.00 3.35
2184 2219 2.434336 CAGTTGATATCCGTTCCCCTCA 59.566 50.000 0.00 0.00 0.00 3.86
2185 2220 2.434702 ACAGTTGATATCCGTTCCCCTC 59.565 50.000 0.00 0.00 0.00 4.30
2186 2221 2.170607 CACAGTTGATATCCGTTCCCCT 59.829 50.000 0.00 0.00 0.00 4.79
2187 2222 2.093128 ACACAGTTGATATCCGTTCCCC 60.093 50.000 0.00 0.00 0.00 4.81
2188 2223 3.261981 ACACAGTTGATATCCGTTCCC 57.738 47.619 0.00 0.00 0.00 3.97
2189 2224 4.935808 AGAAACACAGTTGATATCCGTTCC 59.064 41.667 0.00 0.00 0.00 3.62
2190 2225 5.220228 CGAGAAACACAGTTGATATCCGTTC 60.220 44.000 0.00 0.00 0.00 3.95
2191 2226 4.625742 CGAGAAACACAGTTGATATCCGTT 59.374 41.667 0.00 0.00 0.00 4.44
2192 2227 4.174009 CGAGAAACACAGTTGATATCCGT 58.826 43.478 0.00 0.00 0.00 4.69
2193 2228 4.174009 ACGAGAAACACAGTTGATATCCG 58.826 43.478 0.00 0.00 0.00 4.18
2194 2229 5.411781 AGACGAGAAACACAGTTGATATCC 58.588 41.667 0.00 0.00 0.00 2.59
2195 2230 5.517054 GGAGACGAGAAACACAGTTGATATC 59.483 44.000 0.00 0.00 0.00 1.63
2196 2231 5.186021 AGGAGACGAGAAACACAGTTGATAT 59.814 40.000 0.00 0.00 0.00 1.63
2197 2232 4.523173 AGGAGACGAGAAACACAGTTGATA 59.477 41.667 0.00 0.00 0.00 2.15
2198 2233 3.322254 AGGAGACGAGAAACACAGTTGAT 59.678 43.478 0.00 0.00 0.00 2.57
2199 2234 2.693591 AGGAGACGAGAAACACAGTTGA 59.306 45.455 0.00 0.00 0.00 3.18
2200 2235 3.053455 GAGGAGACGAGAAACACAGTTG 58.947 50.000 0.00 0.00 0.00 3.16
2201 2236 2.036089 GGAGGAGACGAGAAACACAGTT 59.964 50.000 0.00 0.00 0.00 3.16
2202 2237 1.614413 GGAGGAGACGAGAAACACAGT 59.386 52.381 0.00 0.00 0.00 3.55
2203 2238 1.889829 AGGAGGAGACGAGAAACACAG 59.110 52.381 0.00 0.00 0.00 3.66
2204 2239 1.996798 AGGAGGAGACGAGAAACACA 58.003 50.000 0.00 0.00 0.00 3.72
2205 2240 5.831702 TTATAGGAGGAGACGAGAAACAC 57.168 43.478 0.00 0.00 0.00 3.32
2206 2241 6.845758 TTTTATAGGAGGAGACGAGAAACA 57.154 37.500 0.00 0.00 0.00 2.83
2207 2242 9.984190 ATATTTTTATAGGAGGAGACGAGAAAC 57.016 33.333 0.00 0.00 0.00 2.78
2208 2243 9.982651 CATATTTTTATAGGAGGAGACGAGAAA 57.017 33.333 0.00 0.00 0.00 2.52
2209 2244 8.088981 GCATATTTTTATAGGAGGAGACGAGAA 58.911 37.037 0.00 0.00 0.00 2.87
2210 2245 7.309867 GGCATATTTTTATAGGAGGAGACGAGA 60.310 40.741 0.00 0.00 0.00 4.04
2211 2246 6.814146 GGCATATTTTTATAGGAGGAGACGAG 59.186 42.308 0.00 0.00 0.00 4.18
2212 2247 6.571731 CGGCATATTTTTATAGGAGGAGACGA 60.572 42.308 0.00 0.00 0.00 4.20
2213 2248 5.577164 CGGCATATTTTTATAGGAGGAGACG 59.423 44.000 0.00 0.00 0.00 4.18
2214 2249 6.698380 TCGGCATATTTTTATAGGAGGAGAC 58.302 40.000 0.00 0.00 0.00 3.36
2215 2250 6.070767 CCTCGGCATATTTTTATAGGAGGAGA 60.071 42.308 0.00 0.00 40.70 3.71
2216 2251 6.109359 CCTCGGCATATTTTTATAGGAGGAG 58.891 44.000 0.00 0.00 40.70 3.69
2217 2252 5.045869 CCCTCGGCATATTTTTATAGGAGGA 60.046 44.000 4.90 0.00 40.70 3.71
2218 2253 5.186198 CCCTCGGCATATTTTTATAGGAGG 58.814 45.833 0.00 0.00 38.56 4.30
2219 2254 5.186198 CCCCTCGGCATATTTTTATAGGAG 58.814 45.833 0.00 0.00 0.00 3.69
2220 2255 5.174037 CCCCTCGGCATATTTTTATAGGA 57.826 43.478 0.00 0.00 0.00 2.94
2241 2276 4.423209 ACCAGAGGGGGAGGAGCC 62.423 72.222 0.00 0.00 42.91 4.70
2242 2277 2.766229 GACCAGAGGGGGAGGAGC 60.766 72.222 0.00 0.00 42.91 4.70
2243 2278 1.075600 GAGACCAGAGGGGGAGGAG 60.076 68.421 0.00 0.00 42.91 3.69
2244 2279 2.997584 CGAGACCAGAGGGGGAGGA 61.998 68.421 0.00 0.00 42.91 3.71
2245 2280 2.443016 CGAGACCAGAGGGGGAGG 60.443 72.222 0.00 0.00 42.91 4.30
2246 2281 0.905337 AAACGAGACCAGAGGGGGAG 60.905 60.000 0.00 0.00 42.91 4.30
2247 2282 0.410663 TAAACGAGACCAGAGGGGGA 59.589 55.000 0.00 0.00 42.91 4.81
2248 2283 1.272807 TTAAACGAGACCAGAGGGGG 58.727 55.000 0.00 0.00 42.91 5.40
2249 2284 3.055385 TGATTTAAACGAGACCAGAGGGG 60.055 47.826 0.00 0.00 44.81 4.79
2250 2285 4.202245 TGATTTAAACGAGACCAGAGGG 57.798 45.455 0.00 0.00 41.29 4.30
2251 2286 5.238583 ACTTGATTTAAACGAGACCAGAGG 58.761 41.667 10.29 0.00 0.00 3.69
2252 2287 6.787085 AACTTGATTTAAACGAGACCAGAG 57.213 37.500 10.29 0.00 0.00 3.35
2253 2288 8.092068 TCATAACTTGATTTAAACGAGACCAGA 58.908 33.333 10.29 3.52 0.00 3.86
2254 2289 8.251750 TCATAACTTGATTTAAACGAGACCAG 57.748 34.615 10.29 0.00 0.00 4.00
2255 2290 8.786826 ATCATAACTTGATTTAAACGAGACCA 57.213 30.769 10.29 0.00 42.62 4.02
2275 2310 9.429109 TGGGTACAAGACTACAGATTTATCATA 57.571 33.333 0.00 0.00 0.00 2.15
2566 2604 1.089920 GGACATCAGCAACGCAGATT 58.910 50.000 0.00 0.00 32.63 2.40
2640 2678 0.035915 GACAGGCCCAGGAAGAAGAC 60.036 60.000 0.00 0.00 0.00 3.01
2708 2746 5.581605 TGCAGTTTAACAAAGAAGCTTGAG 58.418 37.500 2.10 0.00 0.00 3.02
2792 2830 2.501723 GCTGTCCAGACCAGGATTAAGA 59.498 50.000 0.00 0.00 40.42 2.10
2940 2978 1.696884 TGAACAGTGTGGCCACAGATA 59.303 47.619 38.55 18.37 44.39 1.98
2945 2983 2.420022 GACATATGAACAGTGTGGCCAC 59.580 50.000 29.67 29.67 42.17 5.01
3040 3078 6.013812 AGCTTACCTTCCATCTCTCAATATCC 60.014 42.308 0.00 0.00 0.00 2.59
3173 3241 3.669536 TCGAACTGCACAATTGTATCCA 58.330 40.909 11.53 8.03 0.00 3.41
3302 3371 9.903682 CAAGAGTAAAATCACAAAGAACATCAT 57.096 29.630 0.00 0.00 0.00 2.45
3303 3372 8.902806 ACAAGAGTAAAATCACAAAGAACATCA 58.097 29.630 0.00 0.00 0.00 3.07
3413 3482 3.735591 TGTACCAACTGAAGGTTACAGC 58.264 45.455 0.00 0.00 40.54 4.40
3528 3597 2.037772 GTGAACATGTCCCTCACTGTCT 59.962 50.000 17.96 0.00 37.17 3.41
3529 3598 2.037772 AGTGAACATGTCCCTCACTGTC 59.962 50.000 24.24 6.22 46.17 3.51
3530 3599 2.050144 AGTGAACATGTCCCTCACTGT 58.950 47.619 24.24 7.68 46.17 3.55
3531 3600 2.847327 AGTGAACATGTCCCTCACTG 57.153 50.000 24.24 0.00 46.17 3.66
3642 3719 6.049790 CCTACCACTATGGCTAAGAAACTTC 58.950 44.000 0.00 0.00 42.67 3.01
3653 3730 3.214328 CCAATCAACCTACCACTATGGC 58.786 50.000 0.00 0.00 42.67 4.40
3654 3731 4.503714 ACCAATCAACCTACCACTATGG 57.496 45.455 0.00 0.00 45.02 2.74
3655 3732 5.527582 GCTAACCAATCAACCTACCACTATG 59.472 44.000 0.00 0.00 0.00 2.23
3656 3733 5.190925 TGCTAACCAATCAACCTACCACTAT 59.809 40.000 0.00 0.00 0.00 2.12
3657 3734 4.532916 TGCTAACCAATCAACCTACCACTA 59.467 41.667 0.00 0.00 0.00 2.74
3665 3744 2.352715 GCCAAGTGCTAACCAATCAACC 60.353 50.000 0.00 0.00 36.87 3.77
3798 3877 6.259608 ACACATAGCTGCATATCTCAAACTTC 59.740 38.462 1.02 0.00 0.00 3.01
3807 3886 5.514559 CGATCTGTACACATAGCTGCATATC 59.485 44.000 1.02 0.00 0.00 1.63
3813 3892 3.066760 TGGTCGATCTGTACACATAGCTG 59.933 47.826 0.00 0.00 0.00 4.24
3878 3957 2.432285 CAAATTTGGGCCGGTGCG 60.432 61.111 10.49 0.00 38.85 5.34
3879 3958 2.047370 CCAAATTTGGGCCGGTGC 60.047 61.111 26.87 0.00 44.70 5.01
3888 3967 1.068333 CAGCAGACCGGTCCAAATTTG 60.068 52.381 30.82 21.29 0.00 2.32
3889 3968 1.247567 CAGCAGACCGGTCCAAATTT 58.752 50.000 30.82 8.61 0.00 1.82
3890 3969 1.244019 GCAGCAGACCGGTCCAAATT 61.244 55.000 30.82 9.44 0.00 1.82
3891 3970 1.675641 GCAGCAGACCGGTCCAAAT 60.676 57.895 30.82 9.87 0.00 2.32
3892 3971 2.281484 GCAGCAGACCGGTCCAAA 60.281 61.111 30.82 0.00 0.00 3.28
3893 3972 4.329545 GGCAGCAGACCGGTCCAA 62.330 66.667 30.82 0.00 0.00 3.53
3905 3984 3.567797 GATCCAACGCTCGGCAGC 61.568 66.667 0.00 0.00 42.96 5.25
3906 3985 2.169789 CAGATCCAACGCTCGGCAG 61.170 63.158 0.00 0.00 0.00 4.85
3907 3986 2.125552 CAGATCCAACGCTCGGCA 60.126 61.111 0.00 0.00 0.00 5.69
3908 3987 3.567797 GCAGATCCAACGCTCGGC 61.568 66.667 0.00 0.00 0.00 5.54
3909 3988 1.298157 TTTGCAGATCCAACGCTCGG 61.298 55.000 0.00 0.00 0.00 4.63
3910 3989 0.179215 GTTTGCAGATCCAACGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
3911 3990 0.179215 CGTTTGCAGATCCAACGCTC 60.179 55.000 7.59 0.00 0.00 5.03
3912 3991 1.868997 CGTTTGCAGATCCAACGCT 59.131 52.632 7.59 0.00 0.00 5.07
3913 3992 1.797537 GCGTTTGCAGATCCAACGC 60.798 57.895 24.50 24.50 42.15 4.84
3914 3993 1.509787 CGCGTTTGCAGATCCAACG 60.510 57.895 14.61 14.61 42.97 4.10
3915 3994 0.237235 TTCGCGTTTGCAGATCCAAC 59.763 50.000 5.77 0.00 42.97 3.77
3916 3995 0.947960 TTTCGCGTTTGCAGATCCAA 59.052 45.000 5.77 0.00 42.97 3.53
3917 3996 0.516877 CTTTCGCGTTTGCAGATCCA 59.483 50.000 5.77 0.00 42.97 3.41
3918 3997 0.179189 CCTTTCGCGTTTGCAGATCC 60.179 55.000 5.77 0.00 42.97 3.36
3919 3998 0.796312 TCCTTTCGCGTTTGCAGATC 59.204 50.000 5.77 0.00 42.97 2.75
3920 3999 0.517316 GTCCTTTCGCGTTTGCAGAT 59.483 50.000 5.77 0.00 42.97 2.90
3921 4000 1.827315 CGTCCTTTCGCGTTTGCAGA 61.827 55.000 5.77 0.00 42.97 4.26
3922 4001 1.438710 CGTCCTTTCGCGTTTGCAG 60.439 57.895 5.77 0.00 42.97 4.41
3923 4002 1.827315 CTCGTCCTTTCGCGTTTGCA 61.827 55.000 5.77 0.00 42.97 4.08
3924 4003 1.154654 CTCGTCCTTTCGCGTTTGC 60.155 57.895 5.77 0.00 37.91 3.68
3925 4004 1.068474 ATCTCGTCCTTTCGCGTTTG 58.932 50.000 5.77 0.00 0.00 2.93
3926 4005 1.459592 CAATCTCGTCCTTTCGCGTTT 59.540 47.619 5.77 0.00 0.00 3.60
3927 4006 1.068474 CAATCTCGTCCTTTCGCGTT 58.932 50.000 5.77 0.00 0.00 4.84
3928 4007 0.038526 ACAATCTCGTCCTTTCGCGT 60.039 50.000 5.77 0.00 0.00 6.01
3929 4008 0.640768 GACAATCTCGTCCTTTCGCG 59.359 55.000 0.00 0.00 0.00 5.87
3930 4009 0.640768 CGACAATCTCGTCCTTTCGC 59.359 55.000 0.00 0.00 37.64 4.70
3931 4010 0.640768 GCGACAATCTCGTCCTTTCG 59.359 55.000 0.00 0.00 44.92 3.46
3932 4011 0.640768 CGCGACAATCTCGTCCTTTC 59.359 55.000 0.00 0.00 44.92 2.62
3933 4012 0.242825 TCGCGACAATCTCGTCCTTT 59.757 50.000 3.71 0.00 44.92 3.11
3934 4013 0.456312 GTCGCGACAATCTCGTCCTT 60.456 55.000 33.09 0.00 44.92 3.36
3935 4014 1.136984 GTCGCGACAATCTCGTCCT 59.863 57.895 33.09 0.00 44.92 3.85
3936 4015 1.872679 GGTCGCGACAATCTCGTCC 60.873 63.158 37.26 15.81 44.92 4.79
3937 4016 0.731514 TTGGTCGCGACAATCTCGTC 60.732 55.000 37.26 19.46 44.92 4.20
3938 4017 0.732880 CTTGGTCGCGACAATCTCGT 60.733 55.000 37.26 0.00 44.92 4.18
3939 4018 0.732880 ACTTGGTCGCGACAATCTCG 60.733 55.000 37.26 21.24 45.97 4.04
3940 4019 0.992802 GACTTGGTCGCGACAATCTC 59.007 55.000 37.26 22.36 0.00 2.75
3941 4020 0.317160 TGACTTGGTCGCGACAATCT 59.683 50.000 37.26 18.64 34.95 2.40
3942 4021 1.324736 GATGACTTGGTCGCGACAATC 59.675 52.381 37.26 26.75 34.95 2.67
3943 4022 1.066858 AGATGACTTGGTCGCGACAAT 60.067 47.619 37.26 20.70 34.95 2.71
3944 4023 0.317160 AGATGACTTGGTCGCGACAA 59.683 50.000 37.26 27.39 34.95 3.18
3945 4024 0.317160 AAGATGACTTGGTCGCGACA 59.683 50.000 37.26 22.12 34.95 4.35
3946 4025 0.992802 GAAGATGACTTGGTCGCGAC 59.007 55.000 30.67 30.67 36.39 5.19
3947 4026 0.888619 AGAAGATGACTTGGTCGCGA 59.111 50.000 3.71 3.71 36.39 5.87
3948 4027 1.656095 GAAGAAGATGACTTGGTCGCG 59.344 52.381 0.00 0.00 36.39 5.87
3949 4028 2.003301 GGAAGAAGATGACTTGGTCGC 58.997 52.381 0.00 0.00 36.39 5.19
3950 4029 3.601443 AGGAAGAAGATGACTTGGTCG 57.399 47.619 0.00 0.00 36.39 4.79
3951 4030 4.257731 GGAAGGAAGAAGATGACTTGGTC 58.742 47.826 0.00 0.00 36.39 4.02
3952 4031 3.307059 CGGAAGGAAGAAGATGACTTGGT 60.307 47.826 0.00 0.00 36.39 3.67
3953 4032 3.265791 CGGAAGGAAGAAGATGACTTGG 58.734 50.000 0.00 0.00 36.39 3.61
3954 4033 3.681897 CACGGAAGGAAGAAGATGACTTG 59.318 47.826 0.00 0.00 36.39 3.16
3955 4034 3.866449 GCACGGAAGGAAGAAGATGACTT 60.866 47.826 0.00 0.00 39.24 3.01
3956 4035 2.354203 GCACGGAAGGAAGAAGATGACT 60.354 50.000 0.00 0.00 0.00 3.41
3957 4036 2.003301 GCACGGAAGGAAGAAGATGAC 58.997 52.381 0.00 0.00 0.00 3.06
3958 4037 1.623311 TGCACGGAAGGAAGAAGATGA 59.377 47.619 0.00 0.00 0.00 2.92
3959 4038 1.734465 GTGCACGGAAGGAAGAAGATG 59.266 52.381 0.00 0.00 0.00 2.90
3960 4039 1.347707 TGTGCACGGAAGGAAGAAGAT 59.652 47.619 13.13 0.00 0.00 2.40
3961 4040 0.756294 TGTGCACGGAAGGAAGAAGA 59.244 50.000 13.13 0.00 0.00 2.87
3962 4041 0.868406 GTGTGCACGGAAGGAAGAAG 59.132 55.000 13.13 0.00 0.00 2.85
3963 4042 3.000815 GTGTGCACGGAAGGAAGAA 57.999 52.632 13.13 0.00 0.00 2.52
3964 4043 4.771127 GTGTGCACGGAAGGAAGA 57.229 55.556 13.13 0.00 0.00 2.87
3974 4053 0.247894 TTTTCTGTTCGCGTGTGCAC 60.248 50.000 10.75 10.75 42.97 4.57
3975 4054 0.448197 TTTTTCTGTTCGCGTGTGCA 59.552 45.000 5.77 0.08 42.97 4.57
3976 4055 1.753956 ATTTTTCTGTTCGCGTGTGC 58.246 45.000 5.77 0.00 37.91 4.57
3977 4056 4.383774 TCTATTTTTCTGTTCGCGTGTG 57.616 40.909 5.77 0.00 0.00 3.82
3978 4057 4.929808 AGATCTATTTTTCTGTTCGCGTGT 59.070 37.500 5.77 0.00 0.00 4.49
3979 4058 5.456192 AGATCTATTTTTCTGTTCGCGTG 57.544 39.130 5.77 0.00 0.00 5.34
3980 4059 4.567159 GGAGATCTATTTTTCTGTTCGCGT 59.433 41.667 5.77 0.00 0.00 6.01
3981 4060 4.317418 CGGAGATCTATTTTTCTGTTCGCG 60.317 45.833 0.00 0.00 0.00 5.87
3982 4061 4.551024 GCGGAGATCTATTTTTCTGTTCGC 60.551 45.833 0.00 0.00 0.00 4.70
3983 4062 4.025647 GGCGGAGATCTATTTTTCTGTTCG 60.026 45.833 0.00 0.00 0.00 3.95
3984 4063 4.025647 CGGCGGAGATCTATTTTTCTGTTC 60.026 45.833 0.00 0.00 0.00 3.18
3985 4064 3.871594 CGGCGGAGATCTATTTTTCTGTT 59.128 43.478 0.00 0.00 0.00 3.16
3986 4065 3.458189 CGGCGGAGATCTATTTTTCTGT 58.542 45.455 0.00 0.00 0.00 3.41
3987 4066 2.802816 CCGGCGGAGATCTATTTTTCTG 59.197 50.000 24.41 0.00 0.00 3.02
3988 4067 2.434702 ACCGGCGGAGATCTATTTTTCT 59.565 45.455 35.78 0.40 0.00 2.52
3989 4068 2.835027 ACCGGCGGAGATCTATTTTTC 58.165 47.619 35.78 0.00 0.00 2.29
3990 4069 4.377897 CTTACCGGCGGAGATCTATTTTT 58.622 43.478 35.78 7.84 0.00 1.94
3991 4070 3.802675 GCTTACCGGCGGAGATCTATTTT 60.803 47.826 35.78 8.45 0.00 1.82
3992 4071 2.288886 GCTTACCGGCGGAGATCTATTT 60.289 50.000 35.78 9.31 0.00 1.40
3993 4072 1.272769 GCTTACCGGCGGAGATCTATT 59.727 52.381 35.78 10.16 0.00 1.73
3994 4073 0.889306 GCTTACCGGCGGAGATCTAT 59.111 55.000 35.78 11.04 0.00 1.98
3995 4074 1.177256 GGCTTACCGGCGGAGATCTA 61.177 60.000 35.78 11.54 0.00 1.98
3996 4075 2.499827 GGCTTACCGGCGGAGATCT 61.500 63.158 35.78 12.77 0.00 2.75
3997 4076 2.029221 GGCTTACCGGCGGAGATC 59.971 66.667 35.78 17.80 0.00 2.75
3998 4077 2.444140 AGGCTTACCGGCGGAGAT 60.444 61.111 35.78 13.66 44.22 2.75
3999 4078 3.145551 GAGGCTTACCGGCGGAGA 61.146 66.667 35.78 17.62 44.22 3.71
4000 4079 2.630592 GAAGAGGCTTACCGGCGGAG 62.631 65.000 35.78 21.95 44.22 4.63
4001 4080 2.682494 AAGAGGCTTACCGGCGGA 60.682 61.111 35.78 13.93 44.22 5.54
4002 4081 2.202892 GAAGAGGCTTACCGGCGG 60.203 66.667 27.06 27.06 44.22 6.13
4003 4082 2.582498 CGAAGAGGCTTACCGGCG 60.582 66.667 0.00 0.00 44.22 6.46
4004 4083 2.202892 CCGAAGAGGCTTACCGGC 60.203 66.667 0.00 0.00 42.76 6.13
4005 4084 1.141234 GACCGAAGAGGCTTACCGG 59.859 63.158 16.94 16.94 46.52 5.28
4006 4085 1.141234 GGACCGAAGAGGCTTACCG 59.859 63.158 0.00 0.00 46.52 4.02
4007 4086 0.903236 AAGGACCGAAGAGGCTTACC 59.097 55.000 0.00 0.00 46.52 2.85
4008 4087 1.405661 CCAAGGACCGAAGAGGCTTAC 60.406 57.143 0.00 0.00 46.52 2.34
4009 4088 0.902531 CCAAGGACCGAAGAGGCTTA 59.097 55.000 0.00 0.00 46.52 3.09
4010 4089 1.679898 CCAAGGACCGAAGAGGCTT 59.320 57.895 0.00 0.00 46.52 4.35
4011 4090 2.960688 GCCAAGGACCGAAGAGGCT 61.961 63.158 0.00 0.00 46.52 4.58
4012 4091 2.436824 GCCAAGGACCGAAGAGGC 60.437 66.667 0.00 0.00 46.52 4.70
4014 4093 1.743252 GCAGCCAAGGACCGAAGAG 60.743 63.158 0.00 0.00 0.00 2.85
4015 4094 2.217038 AGCAGCCAAGGACCGAAGA 61.217 57.895 0.00 0.00 0.00 2.87
4016 4095 2.037136 CAGCAGCCAAGGACCGAAG 61.037 63.158 0.00 0.00 0.00 3.79
4017 4096 2.032528 CAGCAGCCAAGGACCGAA 59.967 61.111 0.00 0.00 0.00 4.30
4018 4097 4.704833 GCAGCAGCCAAGGACCGA 62.705 66.667 0.00 0.00 33.58 4.69
4099 4178 4.992511 TTTTGGACCGGCCCGACG 62.993 66.667 3.71 0.00 34.97 5.12
4100 4179 2.595172 TTTTTGGACCGGCCCGAC 60.595 61.111 3.71 0.00 34.97 4.79
4101 4180 2.281900 CTTTTTGGACCGGCCCGA 60.282 61.111 3.71 0.00 34.97 5.14
4102 4181 3.370231 CCTTTTTGGACCGGCCCG 61.370 66.667 0.00 0.00 38.35 6.13
4103 4182 1.116536 TTTCCTTTTTGGACCGGCCC 61.117 55.000 0.00 0.00 46.14 5.80
4104 4183 0.973632 ATTTCCTTTTTGGACCGGCC 59.026 50.000 0.00 4.32 46.14 6.13
4105 4184 3.194755 ACATATTTCCTTTTTGGACCGGC 59.805 43.478 0.00 0.00 46.14 6.13
4106 4185 4.142249 GGACATATTTCCTTTTTGGACCGG 60.142 45.833 0.00 0.00 46.14 5.28
4107 4186 4.142249 GGGACATATTTCCTTTTTGGACCG 60.142 45.833 7.82 0.00 46.14 4.79
4108 4187 5.023452 AGGGACATATTTCCTTTTTGGACC 58.977 41.667 7.82 0.00 46.14 4.46
4109 4188 6.183360 GCTAGGGACATATTTCCTTTTTGGAC 60.183 42.308 7.82 0.00 46.14 4.02
4110 4189 5.891551 GCTAGGGACATATTTCCTTTTTGGA 59.108 40.000 7.82 0.00 44.51 3.53
4111 4190 5.893824 AGCTAGGGACATATTTCCTTTTTGG 59.106 40.000 7.82 0.00 35.76 3.28
4112 4191 6.039829 GGAGCTAGGGACATATTTCCTTTTTG 59.960 42.308 7.82 0.00 35.76 2.44
4113 4192 6.129874 GGAGCTAGGGACATATTTCCTTTTT 58.870 40.000 7.82 0.00 35.76 1.94
4114 4193 5.687706 CGGAGCTAGGGACATATTTCCTTTT 60.688 44.000 7.82 0.00 35.76 2.27
4115 4194 4.202367 CGGAGCTAGGGACATATTTCCTTT 60.202 45.833 7.82 0.22 35.76 3.11
4116 4195 3.325135 CGGAGCTAGGGACATATTTCCTT 59.675 47.826 7.82 2.86 35.76 3.36
4117 4196 2.900546 CGGAGCTAGGGACATATTTCCT 59.099 50.000 7.82 1.27 35.76 3.36
4118 4197 2.633481 ACGGAGCTAGGGACATATTTCC 59.367 50.000 0.00 0.00 34.52 3.13
4119 4198 3.612004 CGACGGAGCTAGGGACATATTTC 60.612 52.174 0.00 0.00 0.00 2.17
4120 4199 2.296471 CGACGGAGCTAGGGACATATTT 59.704 50.000 0.00 0.00 0.00 1.40
4121 4200 1.887198 CGACGGAGCTAGGGACATATT 59.113 52.381 0.00 0.00 0.00 1.28
4122 4201 1.073444 TCGACGGAGCTAGGGACATAT 59.927 52.381 0.00 0.00 0.00 1.78
4123 4202 0.471191 TCGACGGAGCTAGGGACATA 59.529 55.000 0.00 0.00 0.00 2.29
4124 4203 0.820074 CTCGACGGAGCTAGGGACAT 60.820 60.000 0.00 0.00 32.61 3.06
4125 4204 1.451567 CTCGACGGAGCTAGGGACA 60.452 63.158 0.00 0.00 32.61 4.02
4126 4205 3.423179 CTCGACGGAGCTAGGGAC 58.577 66.667 0.00 0.00 32.61 4.46
4138 4217 4.148825 AGACATGCCCGGCTCGAC 62.149 66.667 11.61 2.10 0.00 4.20
4139 4218 3.838271 GAGACATGCCCGGCTCGA 61.838 66.667 11.61 0.00 0.00 4.04
4140 4219 4.899239 GGAGACATGCCCGGCTCG 62.899 72.222 11.61 3.95 0.00 5.03
4141 4220 4.554036 GGGAGACATGCCCGGCTC 62.554 72.222 11.61 0.00 35.50 4.70
4146 4225 4.129148 GGGGTGGGAGACATGCCC 62.129 72.222 0.07 0.07 46.22 5.36
4147 4226 3.017581 AGGGGTGGGAGACATGCC 61.018 66.667 0.00 0.00 37.46 4.40
4148 4227 2.273449 CAGGGGTGGGAGACATGC 59.727 66.667 0.00 0.00 0.00 4.06
4149 4228 1.500783 AACCAGGGGTGGGAGACATG 61.501 60.000 0.00 0.00 35.34 3.21
4150 4229 1.151587 AACCAGGGGTGGGAGACAT 60.152 57.895 0.00 0.00 35.34 3.06
4151 4230 2.153401 CAACCAGGGGTGGGAGACA 61.153 63.158 0.00 0.00 35.34 3.41
4152 4231 2.757077 CAACCAGGGGTGGGAGAC 59.243 66.667 0.00 0.00 35.34 3.36
4153 4232 3.256960 GCAACCAGGGGTGGGAGA 61.257 66.667 5.36 0.00 35.34 3.71
4154 4233 3.574074 CTGCAACCAGGGGTGGGAG 62.574 68.421 5.36 0.00 38.67 4.30
4155 4234 3.579302 CTGCAACCAGGGGTGGGA 61.579 66.667 5.36 0.00 35.34 4.37
4157 4236 4.601794 TGCTGCAACCAGGGGTGG 62.602 66.667 5.36 0.00 39.54 4.61
4158 4237 3.297620 GTGCTGCAACCAGGGGTG 61.298 66.667 2.77 0.00 39.54 4.61
4159 4238 4.603535 GGTGCTGCAACCAGGGGT 62.604 66.667 6.36 0.00 40.22 4.95
4171 4250 3.699894 CCCTCACTCAGCGGTGCT 61.700 66.667 10.38 0.00 40.77 4.40
4172 4251 3.537206 AACCCTCACTCAGCGGTGC 62.537 63.158 10.38 0.00 37.16 5.01
4173 4252 1.374758 GAACCCTCACTCAGCGGTG 60.375 63.158 8.67 8.67 38.44 4.94
4174 4253 2.584391 GGAACCCTCACTCAGCGGT 61.584 63.158 0.00 0.00 0.00 5.68
4175 4254 2.266055 GGAACCCTCACTCAGCGG 59.734 66.667 0.00 0.00 0.00 5.52
4176 4255 1.079543 CTGGAACCCTCACTCAGCG 60.080 63.158 0.00 0.00 0.00 5.18
4177 4256 1.376553 GCTGGAACCCTCACTCAGC 60.377 63.158 0.00 0.00 42.89 4.26
4178 4257 0.617413 ATGCTGGAACCCTCACTCAG 59.383 55.000 0.00 0.00 0.00 3.35
4179 4258 0.615331 GATGCTGGAACCCTCACTCA 59.385 55.000 0.00 0.00 0.00 3.41
4180 4259 0.460987 CGATGCTGGAACCCTCACTC 60.461 60.000 0.00 0.00 0.00 3.51
4181 4260 1.194781 ACGATGCTGGAACCCTCACT 61.195 55.000 0.00 0.00 0.00 3.41
4182 4261 0.741221 GACGATGCTGGAACCCTCAC 60.741 60.000 0.00 0.00 0.00 3.51
4183 4262 1.596934 GACGATGCTGGAACCCTCA 59.403 57.895 0.00 0.00 0.00 3.86
4184 4263 1.519455 CGACGATGCTGGAACCCTC 60.519 63.158 0.00 0.00 0.00 4.30
4185 4264 2.579201 CGACGATGCTGGAACCCT 59.421 61.111 0.00 0.00 0.00 4.34
4186 4265 3.195698 GCGACGATGCTGGAACCC 61.196 66.667 0.00 0.00 0.00 4.11
4187 4266 2.434185 TGCGACGATGCTGGAACC 60.434 61.111 0.00 0.00 35.36 3.62
4188 4267 3.084579 CTGCGACGATGCTGGAAC 58.915 61.111 0.00 0.00 35.36 3.62
4189 4268 2.815211 GCTGCGACGATGCTGGAA 60.815 61.111 0.00 0.00 34.72 3.53
4190 4269 4.819761 GGCTGCGACGATGCTGGA 62.820 66.667 0.00 0.00 34.72 3.86
4204 4283 4.467084 CATGTACGGCGGTGGGCT 62.467 66.667 13.24 0.00 42.94 5.19
4207 4286 4.769063 TGGCATGTACGGCGGTGG 62.769 66.667 13.24 0.00 0.00 4.61
4208 4287 3.496131 GTGGCATGTACGGCGGTG 61.496 66.667 13.24 5.65 0.00 4.94
4216 4295 4.481617 ATGGGCGCGTGGCATGTA 62.482 61.111 24.68 7.62 46.16 2.29
4229 4308 3.592814 CATGCCTGCTGCGATGGG 61.593 66.667 7.94 3.12 45.60 4.00
4230 4309 4.266070 GCATGCCTGCTGCGATGG 62.266 66.667 6.36 0.00 45.32 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.