Multiple sequence alignment - TraesCS4A01G045200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G045200 chr4A 100.000 5312 0 0 1 5312 37307049 37301738 0.000000e+00 9810.0
1 TraesCS4A01G045200 chr4A 81.229 293 19 10 209 469 665985916 665986204 2.510000e-48 204.0
2 TraesCS4A01G045200 chr4A 100.000 29 0 0 4915 4943 37302075 37302047 3.000000e-03 54.7
3 TraesCS4A01G045200 chr4A 100.000 29 0 0 4975 5003 37302135 37302107 3.000000e-03 54.7
4 TraesCS4A01G045200 chr4D 95.861 1812 52 7 1514 3304 428966808 428968617 0.000000e+00 2909.0
5 TraesCS4A01G045200 chr4D 89.410 1492 100 32 3821 5309 428969257 428970693 0.000000e+00 1827.0
6 TraesCS4A01G045200 chr4D 90.509 1296 53 24 181 1423 428965534 428966812 0.000000e+00 1648.0
7 TraesCS4A01G045200 chr4D 93.333 480 24 4 3305 3780 428968712 428969187 0.000000e+00 702.0
8 TraesCS4A01G045200 chr4D 95.122 164 5 3 22 184 89423899 89424060 6.830000e-64 255.0
9 TraesCS4A01G045200 chr4D 96.970 99 3 0 1420 1518 54412558 54412656 3.290000e-37 167.0
10 TraesCS4A01G045200 chr4D 93.519 108 5 1 1422 1529 457526283 457526178 5.510000e-35 159.0
11 TraesCS4A01G045200 chr4B 95.169 1718 53 15 2081 3780 527005983 527007688 0.000000e+00 2686.0
12 TraesCS4A01G045200 chr4B 88.982 1552 90 42 3781 5312 527007852 527009342 0.000000e+00 1844.0
13 TraesCS4A01G045200 chr4B 88.863 1302 68 24 181 1423 527004043 527005326 0.000000e+00 1530.0
14 TraesCS4A01G045200 chr4B 96.837 569 17 1 1514 2082 527005322 527005889 0.000000e+00 950.0
15 TraesCS4A01G045200 chr4B 82.253 293 21 15 207 469 365509576 365509285 1.930000e-54 224.0
16 TraesCS4A01G045200 chr4B 81.570 293 18 9 209 469 636234590 636234302 5.390000e-50 209.0
17 TraesCS4A01G045200 chr4B 80.887 293 20 10 209 469 226623236 226623524 1.170000e-46 198.0
18 TraesCS4A01G045200 chr4B 97.030 101 3 0 1418 1518 107776973 107776873 2.540000e-38 171.0
19 TraesCS4A01G045200 chr4B 94.393 107 6 0 3674 3780 527007695 527007801 1.180000e-36 165.0
20 TraesCS4A01G045200 chr4B 93.578 109 6 1 1422 1529 562739205 562739313 1.530000e-35 161.0
21 TraesCS4A01G045200 chr3B 84.590 305 33 4 311 602 10486924 10487227 1.870000e-74 291.0
22 TraesCS4A01G045200 chr3B 82.594 293 15 12 209 469 755583540 755583252 5.350000e-55 226.0
23 TraesCS4A01G045200 chr6D 94.675 169 5 4 20 187 431160830 431160665 5.280000e-65 259.0
24 TraesCS4A01G045200 chr6D 93.529 170 7 4 17 185 145462459 145462625 3.180000e-62 250.0
25 TraesCS4A01G045200 chr6D 82.594 293 15 15 209 469 83694729 83695017 5.350000e-55 226.0
26 TraesCS4A01G045200 chr5A 95.181 166 5 2 20 184 320214407 320214244 5.280000e-65 259.0
27 TraesCS4A01G045200 chr7A 95.122 164 5 2 22 184 498937367 498937206 6.830000e-64 255.0
28 TraesCS4A01G045200 chr7A 91.803 183 12 3 20 201 451519809 451519989 8.830000e-63 252.0
29 TraesCS4A01G045200 chr7A 86.047 129 15 1 552 680 552751571 552751696 9.280000e-28 135.0
30 TraesCS4A01G045200 chr7D 91.803 183 12 3 20 201 397555079 397554899 8.830000e-63 252.0
31 TraesCS4A01G045200 chr7B 90.710 183 14 3 20 201 401532724 401532544 1.910000e-59 241.0
32 TraesCS4A01G045200 chr7B 80.690 290 26 13 209 469 348044864 348044576 1.170000e-46 198.0
33 TraesCS4A01G045200 chr5D 93.293 164 8 3 22 184 59947843 59947682 6.880000e-59 239.0
34 TraesCS4A01G045200 chr6B 82.253 293 16 10 209 469 697573198 697572910 2.490000e-53 220.0
35 TraesCS4A01G045200 chr6B 82.253 293 16 10 209 469 697597218 697596930 2.490000e-53 220.0
36 TraesCS4A01G045200 chr6B 81.034 290 22 9 209 469 47007606 47007321 3.240000e-47 200.0
37 TraesCS4A01G045200 chr6B 80.887 293 20 6 209 469 648563583 648563871 1.170000e-46 198.0
38 TraesCS4A01G045200 chr1B 81.570 293 18 9 209 469 103074017 103074305 5.390000e-50 209.0
39 TraesCS4A01G045200 chr1B 97.938 97 2 0 1422 1518 612866258 612866162 9.150000e-38 169.0
40 TraesCS4A01G045200 chr1B 96.040 101 4 0 1422 1522 322747417 322747517 1.180000e-36 165.0
41 TraesCS4A01G045200 chr2B 80.887 293 20 9 209 469 576817392 576817104 1.170000e-46 198.0
42 TraesCS4A01G045200 chr2B 79.863 293 23 9 209 469 81027668 81027380 1.180000e-41 182.0
43 TraesCS4A01G045200 chr1A 96.970 99 3 0 1420 1518 581215634 581215536 3.290000e-37 167.0
44 TraesCS4A01G045200 chr3D 94.340 106 6 0 1421 1526 19269717 19269822 4.260000e-36 163.0
45 TraesCS4A01G045200 chr2D 92.920 113 4 4 1422 1531 166808234 166808345 1.530000e-35 161.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G045200 chr4A 37301738 37307049 5311 True 9810.0 9810 100.00000 1 5312 1 chr4A.!!$R1 5311
1 TraesCS4A01G045200 chr4D 428965534 428970693 5159 False 1771.5 2909 92.27825 181 5309 4 chr4D.!!$F3 5128
2 TraesCS4A01G045200 chr4B 527004043 527009342 5299 False 1435.0 2686 92.84880 181 5312 5 chr4B.!!$F3 5131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 482 0.384353 GCGAACGTGGAAAGCAAGAC 60.384 55.000 0.0 0.00 0.00 3.01 F
1432 1509 1.207329 GCAGTTGATTACTCCCTCCGT 59.793 52.381 0.0 0.00 33.85 4.69 F
1776 1854 0.541863 AAGCATCCGGTAACTGGAGG 59.458 55.000 0.0 2.74 41.40 4.30 F
2168 2345 1.017387 GGCAATCCAGGAGCTTAACG 58.983 55.000 0.0 0.00 0.00 3.18 F
3527 3816 1.243902 TGGGTCGCAGTTTTTCATCC 58.756 50.000 0.0 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1662 0.107017 ACCGGATCCTCAAATGGCAG 60.107 55.000 9.46 0.0 0.00 4.85 R
3400 3686 0.104462 CCCATATGGACTCCCCTCCA 60.104 60.000 24.00 0.0 44.72 3.86 R
3721 4120 2.094752 GGCCACAATATCTTGTTTGCGT 60.095 45.455 0.00 0.0 43.05 5.24 R
3780 4179 5.149273 CAACTATGCTGAACACAACACATC 58.851 41.667 0.00 0.0 0.00 3.06 R
4670 5133 0.533308 GCGTGTGTACCCTGTCCAAA 60.533 55.000 0.00 0.0 0.00 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.693120 TGATATATCCCACTCGAATATACTCC 57.307 38.462 10.25 0.00 0.00 3.85
27 28 7.724506 TGATATATCCCACTCGAATATACTCCC 59.275 40.741 10.25 0.00 0.00 4.30
28 29 3.897657 TCCCACTCGAATATACTCCCT 57.102 47.619 0.00 0.00 0.00 4.20
29 30 3.764218 TCCCACTCGAATATACTCCCTC 58.236 50.000 0.00 0.00 0.00 4.30
30 31 2.826725 CCCACTCGAATATACTCCCTCC 59.173 54.545 0.00 0.00 0.00 4.30
31 32 3.500654 CCCACTCGAATATACTCCCTCCT 60.501 52.174 0.00 0.00 0.00 3.69
32 33 3.759618 CCACTCGAATATACTCCCTCCTC 59.240 52.174 0.00 0.00 0.00 3.71
33 34 3.437395 CACTCGAATATACTCCCTCCTCG 59.563 52.174 0.00 0.00 0.00 4.63
34 35 3.072768 ACTCGAATATACTCCCTCCTCGT 59.927 47.826 0.00 0.00 0.00 4.18
35 36 4.073549 CTCGAATATACTCCCTCCTCGTT 58.926 47.826 0.00 0.00 0.00 3.85
36 37 4.070716 TCGAATATACTCCCTCCTCGTTC 58.929 47.826 0.00 0.00 0.00 3.95
37 38 4.073549 CGAATATACTCCCTCCTCGTTCT 58.926 47.826 0.00 0.00 0.00 3.01
38 39 5.012458 TCGAATATACTCCCTCCTCGTTCTA 59.988 44.000 0.00 0.00 0.00 2.10
39 40 5.704515 CGAATATACTCCCTCCTCGTTCTAA 59.295 44.000 0.00 0.00 0.00 2.10
40 41 6.206243 CGAATATACTCCCTCCTCGTTCTAAA 59.794 42.308 0.00 0.00 0.00 1.85
41 42 7.094291 CGAATATACTCCCTCCTCGTTCTAAAT 60.094 40.741 0.00 0.00 0.00 1.40
42 43 5.793030 ATACTCCCTCCTCGTTCTAAATG 57.207 43.478 0.00 0.00 0.00 2.32
43 44 3.442076 ACTCCCTCCTCGTTCTAAATGT 58.558 45.455 0.00 0.00 0.00 2.71
44 45 4.607239 ACTCCCTCCTCGTTCTAAATGTA 58.393 43.478 0.00 0.00 0.00 2.29
45 46 5.021458 ACTCCCTCCTCGTTCTAAATGTAA 58.979 41.667 0.00 0.00 0.00 2.41
46 47 5.127356 ACTCCCTCCTCGTTCTAAATGTAAG 59.873 44.000 0.00 0.00 0.00 2.34
47 48 5.021458 TCCCTCCTCGTTCTAAATGTAAGT 58.979 41.667 0.00 0.00 0.00 2.24
48 49 5.126707 TCCCTCCTCGTTCTAAATGTAAGTC 59.873 44.000 0.00 0.00 0.00 3.01
49 50 5.349809 CCTCCTCGTTCTAAATGTAAGTCC 58.650 45.833 0.00 0.00 0.00 3.85
50 51 5.127356 CCTCCTCGTTCTAAATGTAAGTCCT 59.873 44.000 0.00 0.00 0.00 3.85
51 52 6.351117 CCTCCTCGTTCTAAATGTAAGTCCTT 60.351 42.308 0.00 0.00 0.00 3.36
52 53 7.001099 TCCTCGTTCTAAATGTAAGTCCTTT 57.999 36.000 0.00 0.00 0.00 3.11
53 54 7.447594 TCCTCGTTCTAAATGTAAGTCCTTTT 58.552 34.615 0.00 0.00 0.00 2.27
54 55 8.587608 TCCTCGTTCTAAATGTAAGTCCTTTTA 58.412 33.333 0.00 0.00 0.00 1.52
55 56 8.870879 CCTCGTTCTAAATGTAAGTCCTTTTAG 58.129 37.037 0.00 0.00 35.21 1.85
56 57 9.635520 CTCGTTCTAAATGTAAGTCCTTTTAGA 57.364 33.333 0.00 0.00 38.37 2.10
57 58 9.635520 TCGTTCTAAATGTAAGTCCTTTTAGAG 57.364 33.333 0.00 0.00 39.84 2.43
58 59 9.635520 CGTTCTAAATGTAAGTCCTTTTAGAGA 57.364 33.333 0.00 0.00 39.84 3.10
71 72 9.674068 AGTCCTTTTAGAGATTTCAATAGGAAC 57.326 33.333 0.00 0.00 34.56 3.62
72 73 9.674068 GTCCTTTTAGAGATTTCAATAGGAACT 57.326 33.333 0.00 0.00 46.37 3.01
92 93 9.393512 AGGAACTACATACGGATGTATATAGAC 57.606 37.037 20.64 9.46 45.42 2.59
93 94 8.333908 GGAACTACATACGGATGTATATAGACG 58.666 40.741 20.64 9.79 45.42 4.18
94 95 8.783833 AACTACATACGGATGTATATAGACGT 57.216 34.615 20.64 10.41 45.42 4.34
95 96 9.875691 AACTACATACGGATGTATATAGACGTA 57.124 33.333 20.64 9.65 45.42 3.57
125 126 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
126 127 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
127 128 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
128 129 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
129 130 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
130 131 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
131 132 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
132 133 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
133 134 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
134 135 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
135 136 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
136 137 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
137 138 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
138 139 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
139 140 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
140 141 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
141 142 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
142 143 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
143 144 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
144 145 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
145 146 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
178 179 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
179 180 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
218 221 2.421073 TGCAGCTGCTATTGCTAACTTG 59.579 45.455 36.61 0.00 42.66 3.16
225 228 5.466728 GCTGCTATTGCTAACTTGCTATGTA 59.533 40.000 0.00 0.00 40.48 2.29
270 273 4.222145 ACCAGCTAATTCTAGTTCGTCCAA 59.778 41.667 0.00 0.00 0.00 3.53
282 285 0.761323 TCGTCCAAGGACCACAGGAA 60.761 55.000 13.35 0.00 41.76 3.36
309 329 5.946298 TGAAGTATGCATCAAGCTTTGAAG 58.054 37.500 0.19 0.00 43.95 3.02
322 342 3.501445 AGCTTTGAAGACAGCACTGAATC 59.499 43.478 4.31 0.54 0.00 2.52
325 345 2.420642 TGAAGACAGCACTGAATCAGC 58.579 47.619 10.62 0.00 34.37 4.26
337 357 3.044986 CTGAATCAGCACAACAAAACCG 58.955 45.455 0.00 0.00 0.00 4.44
339 359 3.243035 TGAATCAGCACAACAAAACCGAG 60.243 43.478 0.00 0.00 0.00 4.63
379 399 2.789917 CAGCTGCGGCACTGAATC 59.210 61.111 21.93 0.00 41.70 2.52
443 482 0.384353 GCGAACGTGGAAAGCAAGAC 60.384 55.000 0.00 0.00 0.00 3.01
537 579 4.710167 TGTCCTCCTCGACGCCGA 62.710 66.667 0.00 0.00 43.35 5.54
652 694 2.507992 GTCATCGTCGCTGCTGCT 60.508 61.111 14.03 0.00 36.97 4.24
653 695 2.507769 TCATCGTCGCTGCTGCTG 60.508 61.111 14.03 0.77 36.97 4.41
654 696 2.812609 CATCGTCGCTGCTGCTGT 60.813 61.111 14.03 0.00 36.97 4.40
706 754 1.958205 CCATCCCGCTGCTCGAATC 60.958 63.158 0.00 0.00 41.67 2.52
707 755 2.028190 ATCCCGCTGCTCGAATCG 59.972 61.111 0.00 0.00 41.67 3.34
708 756 2.490148 ATCCCGCTGCTCGAATCGA 61.490 57.895 4.91 4.91 41.67 3.59
775 823 3.839642 CTTTTGGGCCGGTTGTGCG 62.840 63.158 1.90 0.00 0.00 5.34
819 868 3.411351 CTGTTTCGCACCGACCCG 61.411 66.667 0.00 0.00 34.89 5.28
1041 1117 2.596904 AGGACCGGATGTTCATAACG 57.403 50.000 9.46 3.52 0.00 3.18
1068 1144 4.954118 TGGGCGACAGAGTGGGGT 62.954 66.667 0.00 0.00 0.00 4.95
1176 1252 4.329545 TGTTCCCGCACCAGCCTC 62.330 66.667 0.00 0.00 37.52 4.70
1229 1305 9.449719 GTTCTCTTGGTAATTTAGGATTCTGAA 57.550 33.333 0.00 0.00 0.00 3.02
1288 1365 4.522789 TCCTTAGGGCATGAACTTGTTTTC 59.477 41.667 0.00 0.00 0.00 2.29
1296 1373 5.048083 GGCATGAACTTGTTTTCTGTGGATA 60.048 40.000 0.00 0.00 0.00 2.59
1300 1377 9.132521 CATGAACTTGTTTTCTGTGGATATTTC 57.867 33.333 0.00 0.00 0.00 2.17
1307 1384 6.549364 TGTTTTCTGTGGATATTTCAGTTGGT 59.451 34.615 0.00 0.00 0.00 3.67
1308 1385 7.721842 TGTTTTCTGTGGATATTTCAGTTGGTA 59.278 33.333 0.00 0.00 0.00 3.25
1319 1396 8.807948 ATATTTCAGTTGGTATATATGCCACC 57.192 34.615 20.85 14.89 42.40 4.61
1376 1453 3.014623 TGCTCAAATTCAGCTCTGGATG 58.985 45.455 9.99 0.00 37.79 3.51
1391 1468 5.738909 CTCTGGATGTTGAACCTTCATACT 58.261 41.667 0.00 0.00 37.00 2.12
1421 1498 6.780457 ATTTAGCCACATTAGCAGTTGATT 57.220 33.333 0.00 0.00 0.00 2.57
1422 1499 7.880160 ATTTAGCCACATTAGCAGTTGATTA 57.120 32.000 0.00 0.00 0.00 1.75
1423 1500 6.677781 TTAGCCACATTAGCAGTTGATTAC 57.322 37.500 0.00 0.00 0.00 1.89
1424 1501 4.848357 AGCCACATTAGCAGTTGATTACT 58.152 39.130 0.00 0.00 37.68 2.24
1425 1502 4.878397 AGCCACATTAGCAGTTGATTACTC 59.122 41.667 0.00 0.00 33.85 2.59
1426 1503 4.035675 GCCACATTAGCAGTTGATTACTCC 59.964 45.833 0.00 0.00 33.85 3.85
1427 1504 4.576463 CCACATTAGCAGTTGATTACTCCC 59.424 45.833 0.00 0.00 33.85 4.30
1428 1505 5.431765 CACATTAGCAGTTGATTACTCCCT 58.568 41.667 0.00 0.00 33.85 4.20
1429 1506 5.525378 CACATTAGCAGTTGATTACTCCCTC 59.475 44.000 0.00 0.00 33.85 4.30
1430 1507 4.755266 TTAGCAGTTGATTACTCCCTCC 57.245 45.455 0.00 0.00 33.85 4.30
1431 1508 1.482593 AGCAGTTGATTACTCCCTCCG 59.517 52.381 0.00 0.00 33.85 4.63
1432 1509 1.207329 GCAGTTGATTACTCCCTCCGT 59.793 52.381 0.00 0.00 33.85 4.69
1433 1510 2.354805 GCAGTTGATTACTCCCTCCGTT 60.355 50.000 0.00 0.00 33.85 4.44
1434 1511 3.522553 CAGTTGATTACTCCCTCCGTTC 58.477 50.000 0.00 0.00 33.85 3.95
1435 1512 2.500504 AGTTGATTACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 28.23 3.62
1436 1513 2.235402 GTTGATTACTCCCTCCGTTCCA 59.765 50.000 0.00 0.00 0.00 3.53
1437 1514 2.542550 TGATTACTCCCTCCGTTCCAA 58.457 47.619 0.00 0.00 0.00 3.53
1438 1515 2.907696 TGATTACTCCCTCCGTTCCAAA 59.092 45.455 0.00 0.00 0.00 3.28
1439 1516 3.328343 TGATTACTCCCTCCGTTCCAAAA 59.672 43.478 0.00 0.00 0.00 2.44
1440 1517 4.018779 TGATTACTCCCTCCGTTCCAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
1441 1518 5.190132 TGATTACTCCCTCCGTTCCAAAATA 59.810 40.000 0.00 0.00 0.00 1.40
1442 1519 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1443 1520 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1444 1521 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1445 1522 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1446 1523 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1447 1524 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1448 1525 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1449 1526 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1450 1527 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1451 1528 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1452 1529 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1453 1530 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1454 1531 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1455 1532 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1456 1533 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
1457 1534 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
1458 1535 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
1459 1536 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
1460 1537 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
1467 1544 9.046296 AGATGACTCAACTTTGTACTAACTTTG 57.954 33.333 0.00 0.00 0.00 2.77
1468 1545 8.732746 ATGACTCAACTTTGTACTAACTTTGT 57.267 30.769 0.00 0.00 0.00 2.83
1469 1546 9.826574 ATGACTCAACTTTGTACTAACTTTGTA 57.173 29.630 0.00 0.00 0.00 2.41
1470 1547 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
1471 1548 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
1494 1571 8.983702 ACTAAAGTTAGTACAAATTTGGGTCA 57.016 30.769 21.74 2.29 41.92 4.02
1495 1572 9.582648 ACTAAAGTTAGTACAAATTTGGGTCAT 57.417 29.630 21.74 3.45 41.92 3.06
1497 1574 8.706322 AAAGTTAGTACAAATTTGGGTCATCT 57.294 30.769 21.74 10.32 0.00 2.90
1498 1575 9.802039 AAAGTTAGTACAAATTTGGGTCATCTA 57.198 29.630 21.74 11.08 0.00 1.98
1499 1576 9.975218 AAGTTAGTACAAATTTGGGTCATCTAT 57.025 29.630 21.74 0.60 0.00 1.98
1504 1581 9.354673 AGTACAAATTTGGGTCATCTATATTGG 57.645 33.333 21.74 0.00 0.00 3.16
1505 1582 9.349713 GTACAAATTTGGGTCATCTATATTGGA 57.650 33.333 21.74 0.00 0.00 3.53
1506 1583 8.837099 ACAAATTTGGGTCATCTATATTGGAA 57.163 30.769 21.74 0.00 0.00 3.53
1507 1584 8.695456 ACAAATTTGGGTCATCTATATTGGAAC 58.305 33.333 21.74 0.00 0.00 3.62
1508 1585 7.510549 AATTTGGGTCATCTATATTGGAACG 57.489 36.000 0.00 0.00 0.00 3.95
1509 1586 4.617253 TGGGTCATCTATATTGGAACGG 57.383 45.455 0.00 0.00 0.00 4.44
1510 1587 4.228010 TGGGTCATCTATATTGGAACGGA 58.772 43.478 0.00 0.00 0.00 4.69
1511 1588 4.283467 TGGGTCATCTATATTGGAACGGAG 59.717 45.833 0.00 0.00 0.00 4.63
1512 1589 4.322801 GGGTCATCTATATTGGAACGGAGG 60.323 50.000 0.00 0.00 0.00 4.30
1513 1590 4.322801 GGTCATCTATATTGGAACGGAGGG 60.323 50.000 0.00 0.00 0.00 4.30
1514 1591 4.527038 GTCATCTATATTGGAACGGAGGGA 59.473 45.833 0.00 0.00 0.00 4.20
1515 1592 4.772624 TCATCTATATTGGAACGGAGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
1585 1662 3.746045 TGGATATTAGGCTCACGTTCC 57.254 47.619 0.00 0.00 0.00 3.62
1646 1723 4.492570 CGTCTTCGATTTGATGTAAGTGCC 60.493 45.833 0.00 0.00 39.71 5.01
1693 1771 0.750249 GGTAGGAGAGCTGAGAAGGC 59.250 60.000 0.00 0.00 0.00 4.35
1706 1784 4.640364 CTGAGAAGGCAGGGATTCTTATC 58.360 47.826 0.00 0.00 35.93 1.75
1776 1854 0.541863 AAGCATCCGGTAACTGGAGG 59.458 55.000 0.00 2.74 41.40 4.30
1828 1906 4.780815 TCACTTTCCACAAGAACACAGAT 58.219 39.130 0.00 0.00 32.95 2.90
1935 2017 6.427853 TGTTAGTTGATCTTCTGGTGTCATTG 59.572 38.462 0.00 0.00 0.00 2.82
2168 2345 1.017387 GGCAATCCAGGAGCTTAACG 58.983 55.000 0.00 0.00 0.00 3.18
2270 2447 9.574458 CTGTCTGGAAGGACAATATATATTACG 57.426 37.037 7.65 0.03 44.24 3.18
2306 2483 7.238933 ACTGCCAATTAATACCCTAGCCTAATA 59.761 37.037 0.00 0.00 0.00 0.98
2327 2505 3.471680 ACTGTTTGCCTTCTGACTTCTC 58.528 45.455 0.00 0.00 0.00 2.87
2430 2608 5.360714 GGTTCAATTATGCATCCTCTTTCCA 59.639 40.000 0.19 0.00 0.00 3.53
2454 2632 6.836577 TTTTACTTATTTTGTGTTGGCTGC 57.163 33.333 0.00 0.00 0.00 5.25
2511 2703 7.726033 ATGTAGTCTGACTATCCAACTTCTT 57.274 36.000 19.59 1.58 32.65 2.52
2707 2899 4.149747 GCAAAAGAAGAGAAGAGTGACTCG 59.850 45.833 6.99 0.00 38.08 4.18
2899 3091 9.995003 AAATTGGTATAGTCTCATCTCATCTTC 57.005 33.333 0.00 0.00 0.00 2.87
2936 3128 4.022329 ACATAGCCCTTTTGTTACTTGTGC 60.022 41.667 0.00 0.00 0.00 4.57
2941 3133 4.202070 GCCCTTTTGTTACTTGTGCAGTTA 60.202 41.667 0.00 0.00 36.88 2.24
2945 3137 6.404293 CCTTTTGTTACTTGTGCAGTTAGTGT 60.404 38.462 5.74 0.00 36.88 3.55
2959 3151 5.122396 GCAGTTAGTGTTTGTCTTATGGAGG 59.878 44.000 0.00 0.00 0.00 4.30
3262 3454 8.053026 TGTTCTCCTATTCTATTAGCCGTATC 57.947 38.462 0.00 0.00 0.00 2.24
3263 3455 7.122353 TGTTCTCCTATTCTATTAGCCGTATCC 59.878 40.741 0.00 0.00 0.00 2.59
3269 3461 7.711339 CCTATTCTATTAGCCGTATCCAAATCC 59.289 40.741 0.00 0.00 0.00 3.01
3287 3479 6.097839 CCAAATCCTGTCCATTCAATCATTCT 59.902 38.462 0.00 0.00 0.00 2.40
3296 3488 9.690913 TGTCCATTCAATCATTCTCTTCTTTAT 57.309 29.630 0.00 0.00 0.00 1.40
3345 3631 4.701956 AATGTTGTCCGGTTTGATCATC 57.298 40.909 0.00 0.00 0.00 2.92
3527 3816 1.243902 TGGGTCGCAGTTTTTCATCC 58.756 50.000 0.00 0.00 0.00 3.51
3538 3827 6.313905 CGCAGTTTTTCATCCTATACAAGTCT 59.686 38.462 0.00 0.00 0.00 3.24
3541 3830 7.119699 CAGTTTTTCATCCTATACAAGTCTGCA 59.880 37.037 0.00 0.00 0.00 4.41
3662 3951 5.505654 CGCCCATTGGTTAGTATGATTGTTC 60.506 44.000 1.20 0.00 0.00 3.18
3712 4111 9.914131 ACTTTGCTTTAGAAATGAAAATACCTC 57.086 29.630 0.00 0.00 0.00 3.85
3785 4234 1.174078 TGGCACAACTGCAGGATGTG 61.174 55.000 33.41 33.41 46.28 3.21
3794 4243 1.948834 CTGCAGGATGTGTTGTGTTCA 59.051 47.619 5.57 0.00 39.31 3.18
3998 4447 3.125316 GCTGCTTTGCATCTTGTTTCAA 58.875 40.909 0.00 0.00 38.13 2.69
4007 4456 9.414295 CTTTGCATCTTGTTTCAATTAGATTCA 57.586 29.630 0.00 0.00 0.00 2.57
4013 4462 8.169977 TCTTGTTTCAATTAGATTCAAGTGCT 57.830 30.769 0.00 0.00 37.93 4.40
4026 4475 7.609056 AGATTCAAGTGCTTCTTTGCATTTAT 58.391 30.769 0.00 0.00 45.23 1.40
4027 4476 8.742777 AGATTCAAGTGCTTCTTTGCATTTATA 58.257 29.630 0.00 0.00 45.23 0.98
4029 4478 7.213216 TCAAGTGCTTCTTTGCATTTATACA 57.787 32.000 0.00 0.00 45.23 2.29
4030 4479 7.829725 TCAAGTGCTTCTTTGCATTTATACAT 58.170 30.769 0.00 0.00 45.23 2.29
4031 4480 7.970061 TCAAGTGCTTCTTTGCATTTATACATC 59.030 33.333 0.00 0.00 45.23 3.06
4033 4482 7.701445 AGTGCTTCTTTGCATTTATACATCTC 58.299 34.615 0.00 0.00 45.23 2.75
4034 4483 7.555554 AGTGCTTCTTTGCATTTATACATCTCT 59.444 33.333 0.00 0.00 45.23 3.10
4035 4484 7.642978 GTGCTTCTTTGCATTTATACATCTCTG 59.357 37.037 0.00 0.00 45.23 3.35
4036 4485 7.553760 TGCTTCTTTGCATTTATACATCTCTGA 59.446 33.333 0.00 0.00 38.12 3.27
4040 4489 9.399797 TCTTTGCATTTATACATCTCTGATTGT 57.600 29.630 0.00 0.07 0.00 2.71
4043 4492 9.791820 TTGCATTTATACATCTCTGATTGTTTG 57.208 29.630 0.00 0.00 0.00 2.93
4044 4493 9.176460 TGCATTTATACATCTCTGATTGTTTGA 57.824 29.630 0.00 0.00 0.00 2.69
4051 4500 7.490962 ACATCTCTGATTGTTTGAACGTTTA 57.509 32.000 0.46 0.00 0.00 2.01
4118 4567 1.876156 GGACTGGTGTTTCTGCTTCAG 59.124 52.381 0.00 0.00 0.00 3.02
4195 4644 3.064324 GCCACTGGAAATGCCGCT 61.064 61.111 0.00 0.00 40.66 5.52
4196 4645 2.879907 CCACTGGAAATGCCGCTG 59.120 61.111 0.00 0.00 40.66 5.18
4273 4722 7.504403 TCAAAGATTTCTCTGGATGGTAGATC 58.496 38.462 0.00 0.00 0.00 2.75
4274 4723 6.432403 AAGATTTCTCTGGATGGTAGATCC 57.568 41.667 0.00 0.00 38.66 3.36
4275 4724 4.843516 AGATTTCTCTGGATGGTAGATCCC 59.156 45.833 0.00 0.00 37.40 3.85
4276 4725 4.286813 TTTCTCTGGATGGTAGATCCCT 57.713 45.455 0.00 0.00 37.40 4.20
4277 4726 3.251016 TCTCTGGATGGTAGATCCCTG 57.749 52.381 0.00 0.00 37.40 4.45
4278 4727 2.520120 TCTCTGGATGGTAGATCCCTGT 59.480 50.000 0.00 0.00 37.40 4.00
4279 4728 3.727391 TCTCTGGATGGTAGATCCCTGTA 59.273 47.826 0.00 0.00 37.40 2.74
4280 4729 4.358310 TCTCTGGATGGTAGATCCCTGTAT 59.642 45.833 0.00 0.00 37.40 2.29
4304 4753 4.072131 CGTGAATTTCCCCTTTCTTCTCA 58.928 43.478 0.00 0.00 0.00 3.27
4314 4763 5.104109 TCCCCTTTCTTCTCAGAAGAAACAA 60.104 40.000 30.79 16.55 40.95 2.83
4317 4766 5.590259 CCTTTCTTCTCAGAAGAAACAACCA 59.410 40.000 30.79 15.30 40.95 3.67
4375 4824 7.861630 CCATGTTATGGTAGTGTATTAACTGC 58.138 38.462 0.00 0.00 45.54 4.40
4418 4867 6.489361 AGCTCACAACAGATTTTTCAGAATCT 59.511 34.615 0.00 0.00 44.94 2.40
4423 4872 7.916977 CACAACAGATTTTTCAGAATCTCACAA 59.083 33.333 0.00 0.00 42.84 3.33
4438 4887 6.861065 ATCTCACAACTTAATCAAACACGT 57.139 33.333 0.00 0.00 0.00 4.49
4451 4900 4.482386 TCAAACACGTATGCTCAGTACTC 58.518 43.478 0.00 0.00 0.00 2.59
4462 4925 6.735678 ATGCTCAGTACTCGAGTATCTATG 57.264 41.667 27.02 21.14 31.08 2.23
4469 4932 9.945904 TCAGTACTCGAGTATCTATGTATGAAT 57.054 33.333 27.02 0.00 32.54 2.57
4535 4998 1.312815 GGAGCAAGAGCCGCATAAAT 58.687 50.000 0.00 0.00 43.56 1.40
4595 5058 3.261580 CGCATACAGATCTTGTGTTCCA 58.738 45.455 0.00 0.00 41.10 3.53
4670 5133 2.429610 GGCAAATGAGTGAGGCATCAAT 59.570 45.455 0.92 0.00 37.14 2.57
4671 5134 3.118884 GGCAAATGAGTGAGGCATCAATT 60.119 43.478 0.92 0.00 37.14 2.32
4677 5140 3.084039 GAGTGAGGCATCAATTTGGACA 58.916 45.455 0.92 0.00 37.14 4.02
4693 5156 0.250166 GACAGGGTACACACGCCTTT 60.250 55.000 0.00 0.00 38.34 3.11
4717 5180 1.211190 GCTTAGCAGCTTGTGTGCC 59.789 57.895 0.00 0.00 43.51 5.01
4724 5187 2.094390 AGCAGCTTGTGTGCCATATTTG 60.094 45.455 0.00 0.00 42.24 2.32
4729 5192 1.254954 TGTGTGCCATATTTGCTGCA 58.745 45.000 0.00 0.00 0.00 4.41
4733 5196 3.985279 GTGTGCCATATTTGCTGCATATG 59.015 43.478 14.61 14.12 35.96 1.78
4742 5205 8.705134 CCATATTTGCTGCATATGTGTAAAATG 58.295 33.333 21.40 12.80 34.12 2.32
4744 5207 7.997107 ATTTGCTGCATATGTGTAAAATGAG 57.003 32.000 1.84 0.00 0.00 2.90
4745 5208 6.513806 TTGCTGCATATGTGTAAAATGAGT 57.486 33.333 1.84 0.00 0.00 3.41
4746 5209 5.882553 TGCTGCATATGTGTAAAATGAGTG 58.117 37.500 0.00 0.00 0.00 3.51
4747 5210 5.415389 TGCTGCATATGTGTAAAATGAGTGT 59.585 36.000 0.00 0.00 0.00 3.55
4748 5211 5.740569 GCTGCATATGTGTAAAATGAGTGTG 59.259 40.000 4.29 0.00 0.00 3.82
4749 5212 6.623549 GCTGCATATGTGTAAAATGAGTGTGT 60.624 38.462 4.29 0.00 0.00 3.72
4807 5281 7.040271 GGTGTTATGTACAAACCTTACCACATT 60.040 37.037 0.00 0.00 38.80 2.71
4936 5410 8.483218 CGAGATCATATAAAGTTGCAGTAACAG 58.517 37.037 4.03 0.00 41.88 3.16
4942 5416 9.490663 CATATAAAGTTGCAGTAACAGCTAAAC 57.509 33.333 4.03 0.00 41.88 2.01
4946 5421 7.562454 AAGTTGCAGTAACAGCTAAACTTAA 57.438 32.000 4.03 0.00 41.88 1.85
4947 5422 7.562454 AGTTGCAGTAACAGCTAAACTTAAA 57.438 32.000 4.03 0.00 41.88 1.52
4973 5448 6.096423 ACCAGTCCAAAAGAAAACTAAACTCC 59.904 38.462 0.00 0.00 0.00 3.85
4989 5464 9.461312 AACTAAACTCCATCATATAAAGTTGCA 57.539 29.630 0.00 0.00 30.95 4.08
4990 5465 9.113838 ACTAAACTCCATCATATAAAGTTGCAG 57.886 33.333 0.00 0.00 30.95 4.41
4993 5468 9.461312 AAACTCCATCATATAAAGTTGCAGTAA 57.539 29.630 0.00 0.00 30.95 2.24
4994 5469 8.438676 ACTCCATCATATAAAGTTGCAGTAAC 57.561 34.615 0.00 0.00 39.65 2.50
4995 5470 8.046708 ACTCCATCATATAAAGTTGCAGTAACA 58.953 33.333 4.03 0.00 41.88 2.41
4996 5471 8.437360 TCCATCATATAAAGTTGCAGTAACAG 57.563 34.615 4.03 0.00 41.88 3.16
4997 5472 7.012327 TCCATCATATAAAGTTGCAGTAACAGC 59.988 37.037 4.03 0.00 41.88 4.40
4998 5473 7.012704 CCATCATATAAAGTTGCAGTAACAGCT 59.987 37.037 4.03 0.00 41.88 4.24
4999 5474 9.045223 CATCATATAAAGTTGCAGTAACAGCTA 57.955 33.333 4.03 0.00 41.88 3.32
5000 5475 9.613428 ATCATATAAAGTTGCAGTAACAGCTAA 57.387 29.630 4.03 0.00 41.88 3.09
5001 5476 9.443323 TCATATAAAGTTGCAGTAACAGCTAAA 57.557 29.630 4.03 0.00 41.88 1.85
5006 5481 5.063204 AGTTGCAGTAACAGCTAAACATCA 58.937 37.500 4.03 0.00 41.88 3.07
5062 5537 3.576550 GCCACCAGATAAACCCTTGAAAA 59.423 43.478 0.00 0.00 0.00 2.29
5145 5620 7.723172 AGAAAAAGAAGATCAAATCCTGTCTGT 59.277 33.333 0.00 0.00 0.00 3.41
5174 5649 6.431198 AAAGCTGAAACGAAACTAAACTCA 57.569 33.333 0.00 0.00 0.00 3.41
5199 5674 1.377994 CCACTCTGCCAGCTCCTTT 59.622 57.895 0.00 0.00 0.00 3.11
5208 5683 4.588528 TCTGCCAGCTCCTTTGTTTTATTT 59.411 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.788806 GGAGTATATTCGAGTGGGATATATCAG 58.211 40.741 14.60 0.00 0.00 2.90
1 2 7.724506 GGGAGTATATTCGAGTGGGATATATCA 59.275 40.741 14.60 0.00 0.00 2.15
2 3 7.945664 AGGGAGTATATTCGAGTGGGATATATC 59.054 40.741 3.96 3.96 0.00 1.63
3 4 7.827787 AGGGAGTATATTCGAGTGGGATATAT 58.172 38.462 0.00 0.00 0.00 0.86
4 5 7.222180 AGGGAGTATATTCGAGTGGGATATA 57.778 40.000 0.00 0.00 0.00 0.86
5 6 6.093617 AGGGAGTATATTCGAGTGGGATAT 57.906 41.667 0.00 0.00 0.00 1.63
6 7 5.507637 GAGGGAGTATATTCGAGTGGGATA 58.492 45.833 0.00 0.00 0.00 2.59
7 8 4.345854 GAGGGAGTATATTCGAGTGGGAT 58.654 47.826 0.00 0.00 0.00 3.85
8 9 3.499926 GGAGGGAGTATATTCGAGTGGGA 60.500 52.174 0.00 0.00 0.00 4.37
9 10 2.826725 GGAGGGAGTATATTCGAGTGGG 59.173 54.545 0.00 0.00 0.00 4.61
10 11 3.759618 GAGGAGGGAGTATATTCGAGTGG 59.240 52.174 0.00 0.00 0.00 4.00
11 12 3.437395 CGAGGAGGGAGTATATTCGAGTG 59.563 52.174 0.00 0.00 0.00 3.51
12 13 3.072768 ACGAGGAGGGAGTATATTCGAGT 59.927 47.826 0.00 0.00 0.00 4.18
13 14 3.677190 ACGAGGAGGGAGTATATTCGAG 58.323 50.000 0.00 0.00 0.00 4.04
14 15 3.784511 ACGAGGAGGGAGTATATTCGA 57.215 47.619 0.00 0.00 0.00 3.71
15 16 4.073549 AGAACGAGGAGGGAGTATATTCG 58.926 47.826 0.00 0.00 0.00 3.34
16 17 7.521871 TTTAGAACGAGGAGGGAGTATATTC 57.478 40.000 0.00 0.00 0.00 1.75
17 18 7.509659 ACATTTAGAACGAGGAGGGAGTATATT 59.490 37.037 0.00 0.00 0.00 1.28
18 19 7.011382 ACATTTAGAACGAGGAGGGAGTATAT 58.989 38.462 0.00 0.00 0.00 0.86
19 20 6.371278 ACATTTAGAACGAGGAGGGAGTATA 58.629 40.000 0.00 0.00 0.00 1.47
20 21 5.209659 ACATTTAGAACGAGGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
21 22 4.607239 ACATTTAGAACGAGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
22 23 3.442076 ACATTTAGAACGAGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
23 24 5.127356 ACTTACATTTAGAACGAGGAGGGAG 59.873 44.000 0.00 0.00 0.00 4.30
24 25 5.021458 ACTTACATTTAGAACGAGGAGGGA 58.979 41.667 0.00 0.00 0.00 4.20
25 26 5.340439 ACTTACATTTAGAACGAGGAGGG 57.660 43.478 0.00 0.00 0.00 4.30
26 27 5.127356 AGGACTTACATTTAGAACGAGGAGG 59.873 44.000 0.00 0.00 0.00 4.30
27 28 6.210287 AGGACTTACATTTAGAACGAGGAG 57.790 41.667 0.00 0.00 0.00 3.69
28 29 6.600882 AAGGACTTACATTTAGAACGAGGA 57.399 37.500 0.00 0.00 0.00 3.71
29 30 7.668525 AAAAGGACTTACATTTAGAACGAGG 57.331 36.000 0.00 0.00 32.10 4.63
30 31 9.635520 TCTAAAAGGACTTACATTTAGAACGAG 57.364 33.333 4.78 0.00 39.89 4.18
31 32 9.635520 CTCTAAAAGGACTTACATTTAGAACGA 57.364 33.333 7.86 0.00 41.34 3.85
32 33 9.635520 TCTCTAAAAGGACTTACATTTAGAACG 57.364 33.333 7.86 0.00 41.34 3.95
45 46 9.674068 GTTCCTATTGAAATCTCTAAAAGGACT 57.326 33.333 0.00 0.00 33.94 3.85
46 47 9.674068 AGTTCCTATTGAAATCTCTAAAAGGAC 57.326 33.333 0.00 0.00 33.94 3.85
54 55 8.361139 CCGTATGTAGTTCCTATTGAAATCTCT 58.639 37.037 0.00 0.00 33.94 3.10
55 56 8.358148 TCCGTATGTAGTTCCTATTGAAATCTC 58.642 37.037 0.00 0.00 33.94 2.75
56 57 8.246430 TCCGTATGTAGTTCCTATTGAAATCT 57.754 34.615 0.00 0.00 33.94 2.40
57 58 8.926710 CATCCGTATGTAGTTCCTATTGAAATC 58.073 37.037 0.00 0.00 33.94 2.17
58 59 8.429641 ACATCCGTATGTAGTTCCTATTGAAAT 58.570 33.333 0.00 0.00 44.66 2.17
59 60 7.788026 ACATCCGTATGTAGTTCCTATTGAAA 58.212 34.615 0.00 0.00 44.66 2.69
60 61 7.356089 ACATCCGTATGTAGTTCCTATTGAA 57.644 36.000 0.00 0.00 44.66 2.69
61 62 6.971726 ACATCCGTATGTAGTTCCTATTGA 57.028 37.500 0.00 0.00 44.66 2.57
89 90 8.958506 AGTGAATCTACACTCTAAAATACGTCT 58.041 33.333 0.00 0.00 46.36 4.18
103 104 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
104 105 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
105 106 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
106 107 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
107 108 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
108 109 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
109 110 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
110 111 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
111 112 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
112 113 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
113 114 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
114 115 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
115 116 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
116 117 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
117 118 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
118 119 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
119 120 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
120 121 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
121 122 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
122 123 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
123 124 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
152 153 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
153 154 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
154 155 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
155 156 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
156 157 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
157 158 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
158 159 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
159 160 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
160 161 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
161 162 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
162 163 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
163 164 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
164 165 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
165 166 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
166 167 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
167 168 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
168 169 2.236395 CAATTGTACTCCCTCCGTTCCT 59.764 50.000 0.00 0.00 0.00 3.36
169 170 2.235402 TCAATTGTACTCCCTCCGTTCC 59.765 50.000 5.13 0.00 0.00 3.62
170 171 3.604875 TCAATTGTACTCCCTCCGTTC 57.395 47.619 5.13 0.00 0.00 3.95
171 172 3.868754 GCTTCAATTGTACTCCCTCCGTT 60.869 47.826 5.13 0.00 0.00 4.44
172 173 2.354805 GCTTCAATTGTACTCCCTCCGT 60.355 50.000 5.13 0.00 0.00 4.69
173 174 2.280628 GCTTCAATTGTACTCCCTCCG 58.719 52.381 5.13 0.00 0.00 4.63
174 175 3.350219 TGCTTCAATTGTACTCCCTCC 57.650 47.619 5.13 0.00 0.00 4.30
175 176 5.644644 CATTTGCTTCAATTGTACTCCCTC 58.355 41.667 5.13 0.00 0.00 4.30
176 177 4.082026 GCATTTGCTTCAATTGTACTCCCT 60.082 41.667 5.13 0.00 38.21 4.20
177 178 4.176271 GCATTTGCTTCAATTGTACTCCC 58.824 43.478 5.13 0.00 38.21 4.30
178 179 4.808558 TGCATTTGCTTCAATTGTACTCC 58.191 39.130 5.13 0.00 42.66 3.85
179 180 4.325472 GCTGCATTTGCTTCAATTGTACTC 59.675 41.667 5.13 0.00 42.66 2.59
218 221 4.989168 CGGATTAGTCTGGGTTTACATAGC 59.011 45.833 0.00 0.00 0.00 2.97
225 228 3.170717 TCACTCGGATTAGTCTGGGTTT 58.829 45.455 0.00 0.00 41.82 3.27
270 273 2.982488 ACTTCATTCTTCCTGTGGTCCT 59.018 45.455 0.00 0.00 0.00 3.85
282 285 6.376299 TCAAAGCTTGATGCATACTTCATTCT 59.624 34.615 0.00 0.00 45.94 2.40
309 329 1.516161 TGTGCTGATTCAGTGCTGTC 58.484 50.000 14.90 0.00 33.43 3.51
322 342 1.021202 TCCTCGGTTTTGTTGTGCTG 58.979 50.000 0.00 0.00 0.00 4.41
325 345 1.384525 TGGTCCTCGGTTTTGTTGTG 58.615 50.000 0.00 0.00 0.00 3.33
337 357 3.012518 CTCATTGGTTGACATGGTCCTC 58.987 50.000 0.00 0.00 0.00 3.71
339 359 1.474077 GCTCATTGGTTGACATGGTCC 59.526 52.381 0.00 0.00 0.00 4.46
366 386 1.078918 CTCCTGATTCAGTGCCGCA 60.079 57.895 12.54 0.00 0.00 5.69
367 387 2.467826 GCTCCTGATTCAGTGCCGC 61.468 63.158 12.54 5.65 0.00 6.53
368 388 1.078918 TGCTCCTGATTCAGTGCCG 60.079 57.895 19.41 4.49 31.56 5.69
369 389 0.251354 TCTGCTCCTGATTCAGTGCC 59.749 55.000 19.41 6.96 31.56 5.01
370 390 2.008329 CTTCTGCTCCTGATTCAGTGC 58.992 52.381 12.54 15.10 32.60 4.40
371 391 3.606595 TCTTCTGCTCCTGATTCAGTG 57.393 47.619 12.54 6.29 0.00 3.66
379 399 5.106634 GCTGCATAATATTCTTCTGCTCCTG 60.107 44.000 0.00 0.00 34.02 3.86
443 482 3.005554 CAAGCTGTACCAGATCAAGGTG 58.994 50.000 17.38 4.91 40.26 4.00
694 742 2.277310 TCGTCGATTCGAGCAGCG 60.277 61.111 9.42 9.57 36.23 5.18
706 754 2.276994 GAGCGAGCTGAGTCGTCG 60.277 66.667 0.84 5.28 42.17 5.12
707 755 2.276994 CGAGCGAGCTGAGTCGTC 60.277 66.667 0.84 0.00 42.17 4.20
708 756 3.805307 CCGAGCGAGCTGAGTCGT 61.805 66.667 0.84 0.00 42.17 4.34
743 791 1.008079 AAAAGCAGAGCGCAAGTGC 60.008 52.632 17.89 17.89 46.13 4.40
744 792 0.662374 CCAAAAGCAGAGCGCAAGTG 60.662 55.000 11.47 4.51 46.13 3.16
798 846 0.442699 GGTCGGTGCGAAACAGATTC 59.557 55.000 0.00 0.00 37.72 2.52
801 849 2.029964 GGGTCGGTGCGAAACAGA 59.970 61.111 0.00 0.00 37.72 3.41
862 937 3.199289 GTCGGGGAAAGAGAAGGGAATAA 59.801 47.826 0.00 0.00 0.00 1.40
985 1061 1.077334 CCCCATCTCCGACTACCCTAT 59.923 57.143 0.00 0.00 0.00 2.57
990 1066 2.068834 TCTTCCCCATCTCCGACTAC 57.931 55.000 0.00 0.00 0.00 2.73
1068 1144 3.551496 CTCCCTGTTCTTGGCGCCA 62.551 63.158 29.03 29.03 0.00 5.69
1176 1252 1.138247 GCAGGCAAATCTTCCAGCG 59.862 57.895 0.00 0.00 0.00 5.18
1229 1305 3.452474 CTCAAGCTCTCCGAAATTCGAT 58.548 45.455 17.75 0.00 43.74 3.59
1296 1373 6.609876 TGGTGGCATATATACCAACTGAAAT 58.390 36.000 18.92 0.00 44.42 2.17
1300 1377 4.973168 ACTGGTGGCATATATACCAACTG 58.027 43.478 20.10 20.10 44.42 3.16
1307 1384 7.792364 ACTAGCTTAACTGGTGGCATATATA 57.208 36.000 0.00 0.00 38.91 0.86
1308 1385 6.688073 ACTAGCTTAACTGGTGGCATATAT 57.312 37.500 0.00 0.00 38.91 0.86
1391 1468 6.765989 ACTGCTAATGTGGCTAAATTCGAATA 59.234 34.615 11.83 0.00 0.00 1.75
1421 1498 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1422 1499 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1423 1500 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1424 1501 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1425 1502 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1426 1503 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1427 1504 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1428 1505 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1429 1506 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1430 1507 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1431 1508 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
1432 1509 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
1433 1510 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
1434 1511 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
1441 1518 9.046296 CAAAGTTAGTACAAAGTTGAGTCATCT 57.954 33.333 0.00 0.00 0.00 2.90
1442 1519 8.827677 ACAAAGTTAGTACAAAGTTGAGTCATC 58.172 33.333 0.00 0.00 0.00 2.92
1443 1520 8.732746 ACAAAGTTAGTACAAAGTTGAGTCAT 57.267 30.769 0.00 0.00 0.00 3.06
1444 1521 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
1445 1522 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
1469 1546 8.983702 TGACCCAAATTTGTACTAACTTTAGT 57.016 30.769 16.73 6.85 45.39 2.24
1471 1548 9.802039 AGATGACCCAAATTTGTACTAACTTTA 57.198 29.630 16.73 0.00 0.00 1.85
1472 1549 8.706322 AGATGACCCAAATTTGTACTAACTTT 57.294 30.769 16.73 0.00 0.00 2.66
1473 1550 9.975218 ATAGATGACCCAAATTTGTACTAACTT 57.025 29.630 16.73 0.00 0.00 2.66
1478 1555 9.354673 CCAATATAGATGACCCAAATTTGTACT 57.645 33.333 16.73 8.68 0.00 2.73
1479 1556 9.349713 TCCAATATAGATGACCCAAATTTGTAC 57.650 33.333 16.73 8.17 0.00 2.90
1480 1557 9.928618 TTCCAATATAGATGACCCAAATTTGTA 57.071 29.630 16.73 1.57 0.00 2.41
1481 1558 8.695456 GTTCCAATATAGATGACCCAAATTTGT 58.305 33.333 16.73 0.00 0.00 2.83
1482 1559 7.862372 CGTTCCAATATAGATGACCCAAATTTG 59.138 37.037 11.40 11.40 0.00 2.32
1483 1560 7.014230 CCGTTCCAATATAGATGACCCAAATTT 59.986 37.037 0.00 0.00 0.00 1.82
1484 1561 6.490040 CCGTTCCAATATAGATGACCCAAATT 59.510 38.462 0.00 0.00 0.00 1.82
1485 1562 6.003950 CCGTTCCAATATAGATGACCCAAAT 58.996 40.000 0.00 0.00 0.00 2.32
1486 1563 5.131308 TCCGTTCCAATATAGATGACCCAAA 59.869 40.000 0.00 0.00 0.00 3.28
1487 1564 4.656575 TCCGTTCCAATATAGATGACCCAA 59.343 41.667 0.00 0.00 0.00 4.12
1488 1565 4.228010 TCCGTTCCAATATAGATGACCCA 58.772 43.478 0.00 0.00 0.00 4.51
1489 1566 4.322801 CCTCCGTTCCAATATAGATGACCC 60.323 50.000 0.00 0.00 0.00 4.46
1490 1567 4.322801 CCCTCCGTTCCAATATAGATGACC 60.323 50.000 0.00 0.00 0.00 4.02
1491 1568 4.527038 TCCCTCCGTTCCAATATAGATGAC 59.473 45.833 0.00 0.00 0.00 3.06
1492 1569 4.747583 TCCCTCCGTTCCAATATAGATGA 58.252 43.478 0.00 0.00 0.00 2.92
1493 1570 4.528596 ACTCCCTCCGTTCCAATATAGATG 59.471 45.833 0.00 0.00 0.00 2.90
1494 1571 4.753186 ACTCCCTCCGTTCCAATATAGAT 58.247 43.478 0.00 0.00 0.00 1.98
1495 1572 4.194678 ACTCCCTCCGTTCCAATATAGA 57.805 45.455 0.00 0.00 0.00 1.98
1496 1573 5.078256 ACTACTCCCTCCGTTCCAATATAG 58.922 45.833 0.00 0.00 0.00 1.31
1497 1574 5.070823 ACTACTCCCTCCGTTCCAATATA 57.929 43.478 0.00 0.00 0.00 0.86
1498 1575 3.924922 ACTACTCCCTCCGTTCCAATAT 58.075 45.455 0.00 0.00 0.00 1.28
1499 1576 3.393426 ACTACTCCCTCCGTTCCAATA 57.607 47.619 0.00 0.00 0.00 1.90
1500 1577 2.249309 ACTACTCCCTCCGTTCCAAT 57.751 50.000 0.00 0.00 0.00 3.16
1501 1578 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
1502 1579 2.042162 ACTTACTACTCCCTCCGTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
1503 1580 2.732763 ACTTACTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
1504 1581 5.417266 ACTTTACTTACTACTCCCTCCGTTC 59.583 44.000 0.00 0.00 0.00 3.95
1505 1582 5.328565 ACTTTACTTACTACTCCCTCCGTT 58.671 41.667 0.00 0.00 0.00 4.44
1506 1583 4.928263 ACTTTACTTACTACTCCCTCCGT 58.072 43.478 0.00 0.00 0.00 4.69
1507 1584 4.946157 TGACTTTACTTACTACTCCCTCCG 59.054 45.833 0.00 0.00 0.00 4.63
1508 1585 6.847421 TTGACTTTACTTACTACTCCCTCC 57.153 41.667 0.00 0.00 0.00 4.30
1509 1586 7.417683 GGGATTGACTTTACTTACTACTCCCTC 60.418 44.444 0.00 0.00 35.59 4.30
1510 1587 6.383436 GGGATTGACTTTACTTACTACTCCCT 59.617 42.308 0.00 0.00 35.59 4.20
1511 1588 6.383436 AGGGATTGACTTTACTTACTACTCCC 59.617 42.308 0.00 0.00 38.15 4.30
1512 1589 7.342541 AGAGGGATTGACTTTACTTACTACTCC 59.657 40.741 0.00 0.00 0.00 3.85
1513 1590 8.296211 AGAGGGATTGACTTTACTTACTACTC 57.704 38.462 0.00 0.00 0.00 2.59
1514 1591 8.667592 AAGAGGGATTGACTTTACTTACTACT 57.332 34.615 0.00 0.00 0.00 2.57
1515 1592 8.751242 AGAAGAGGGATTGACTTTACTTACTAC 58.249 37.037 0.00 0.00 0.00 2.73
1585 1662 0.107017 ACCGGATCCTCAAATGGCAG 60.107 55.000 9.46 0.00 0.00 4.85
1646 1723 5.983540 AGTTATCCAAGAAGCAACTCCTAG 58.016 41.667 0.00 0.00 0.00 3.02
1693 1771 7.121759 TCAGAAGCAAAAAGATAAGAATCCCTG 59.878 37.037 0.00 0.00 31.98 4.45
1706 1784 5.048504 TGCTCCTACATTCAGAAGCAAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
1776 1854 0.540923 ATCCTCCTGCTTCAGTGCTC 59.459 55.000 0.00 0.00 0.00 4.26
1828 1906 1.638070 TGCCATAGATTCAACCCACCA 59.362 47.619 0.00 0.00 0.00 4.17
1833 1911 6.633856 ACTTTTTCATGCCATAGATTCAACC 58.366 36.000 0.00 0.00 0.00 3.77
1837 1915 6.363577 TCGACTTTTTCATGCCATAGATTC 57.636 37.500 0.00 0.00 0.00 2.52
1935 2017 9.262472 CTGCACGAAAAGAGTAAATATTAACAC 57.738 33.333 0.00 0.00 0.00 3.32
2281 2458 4.373156 AGGCTAGGGTATTAATTGGCAG 57.627 45.455 0.00 0.00 0.00 4.85
2284 2461 8.603304 ACAGTATTAGGCTAGGGTATTAATTGG 58.397 37.037 0.00 0.00 0.00 3.16
2306 2483 3.135530 AGAGAAGTCAGAAGGCAAACAGT 59.864 43.478 0.00 0.00 0.00 3.55
2327 2505 4.825546 ATCAAGCGCATTTGGATTCTAG 57.174 40.909 11.47 0.00 0.00 2.43
2430 2608 7.216494 AGCAGCCAACACAAAATAAGTAAAAT 58.784 30.769 0.00 0.00 0.00 1.82
2481 2673 8.470805 AGTTGGATAGTCAGACTACATAAGTTG 58.529 37.037 12.75 0.00 39.07 3.16
2482 2674 8.596781 AGTTGGATAGTCAGACTACATAAGTT 57.403 34.615 12.75 0.00 39.07 2.66
2707 2899 5.181433 AGGTTTAGGTTCTTTGCTCGATTTC 59.819 40.000 0.00 0.00 0.00 2.17
2919 3111 4.385358 AACTGCACAAGTAACAAAAGGG 57.615 40.909 0.00 0.00 38.56 3.95
2936 3128 6.147821 CACCTCCATAAGACAAACACTAACTG 59.852 42.308 0.00 0.00 0.00 3.16
2941 3133 4.974645 TCACCTCCATAAGACAAACACT 57.025 40.909 0.00 0.00 0.00 3.55
2945 3137 4.019681 ACCGAATCACCTCCATAAGACAAA 60.020 41.667 0.00 0.00 0.00 2.83
2959 3151 5.873179 TTAACCTGAAATCACCGAATCAC 57.127 39.130 0.00 0.00 0.00 3.06
3262 3454 5.864418 ATGATTGAATGGACAGGATTTGG 57.136 39.130 0.00 0.00 0.00 3.28
3263 3455 7.068348 AGAGAATGATTGAATGGACAGGATTTG 59.932 37.037 0.00 0.00 0.00 2.32
3269 3461 7.627298 AAGAAGAGAATGATTGAATGGACAG 57.373 36.000 0.00 0.00 0.00 3.51
3287 3479 8.157476 GCCATAATCAAGGGAGTATAAAGAAGA 58.843 37.037 0.00 0.00 32.87 2.87
3333 3619 6.007936 TGTAAAAAGGTGATGATCAAACCG 57.992 37.500 19.79 0.00 39.07 4.44
3400 3686 0.104462 CCCATATGGACTCCCCTCCA 60.104 60.000 24.00 0.00 44.72 3.86
3440 3729 6.330004 TGAATGTAGCAGCTTTGAATTCAA 57.670 33.333 16.91 16.91 31.55 2.69
3527 3816 5.808042 AAATGTGCTGCAGACTTGTATAG 57.192 39.130 20.43 0.00 0.00 1.31
3538 3827 6.915544 TGTTTGAAATTTAAATGTGCTGCA 57.084 29.167 0.39 0.00 0.00 4.41
3541 3830 9.762933 ACTGTATGTTTGAAATTTAAATGTGCT 57.237 25.926 0.39 0.00 0.00 4.40
3697 4096 9.469239 CGTAAAACTACGAGGTATTTTCATTTC 57.531 33.333 0.00 0.00 45.45 2.17
3721 4120 2.094752 GGCCACAATATCTTGTTTGCGT 60.095 45.455 0.00 0.00 43.05 5.24
3780 4179 5.149273 CAACTATGCTGAACACAACACATC 58.851 41.667 0.00 0.00 0.00 3.06
3785 4234 6.885735 AAAAACAACTATGCTGAACACAAC 57.114 33.333 0.00 0.00 0.00 3.32
3889 4338 6.411376 TCCGTGTAAGGATTCACAAATACAT 58.589 36.000 0.00 0.00 34.92 2.29
3998 4447 6.579666 TGCAAAGAAGCACTTGAATCTAAT 57.420 33.333 0.00 0.00 40.11 1.73
4026 4475 7.490962 AAACGTTCAAACAATCAGAGATGTA 57.509 32.000 0.00 0.00 0.00 2.29
4027 4476 6.377327 AAACGTTCAAACAATCAGAGATGT 57.623 33.333 0.00 0.00 0.00 3.06
4029 4478 9.398170 CAAATAAACGTTCAAACAATCAGAGAT 57.602 29.630 0.00 0.00 0.00 2.75
4030 4479 7.378461 GCAAATAAACGTTCAAACAATCAGAGA 59.622 33.333 0.00 0.00 0.00 3.10
4031 4480 7.167302 TGCAAATAAACGTTCAAACAATCAGAG 59.833 33.333 0.00 0.00 0.00 3.35
4033 4482 7.159437 TGCAAATAAACGTTCAAACAATCAG 57.841 32.000 0.00 0.00 0.00 2.90
4034 4483 7.706281 ATGCAAATAAACGTTCAAACAATCA 57.294 28.000 0.00 0.00 0.00 2.57
4039 4488 8.704234 TGGATTAATGCAAATAAACGTTCAAAC 58.296 29.630 7.25 0.00 0.00 2.93
4040 4489 8.818141 TGGATTAATGCAAATAAACGTTCAAA 57.182 26.923 7.25 0.00 0.00 2.69
4041 4490 7.543868 CCTGGATTAATGCAAATAAACGTTCAA 59.456 33.333 11.06 0.00 0.00 2.69
4042 4491 7.032580 CCTGGATTAATGCAAATAAACGTTCA 58.967 34.615 11.06 0.00 0.00 3.18
4043 4492 7.254852 TCCTGGATTAATGCAAATAAACGTTC 58.745 34.615 11.06 0.00 0.00 3.95
4044 4493 7.164230 TCCTGGATTAATGCAAATAAACGTT 57.836 32.000 11.06 0.00 0.00 3.99
4045 4494 6.767524 TCCTGGATTAATGCAAATAAACGT 57.232 33.333 11.06 0.00 0.00 3.99
4046 4495 9.398170 CTTATCCTGGATTAATGCAAATAAACG 57.602 33.333 15.55 4.60 0.00 3.60
4047 4496 9.696917 CCTTATCCTGGATTAATGCAAATAAAC 57.303 33.333 15.55 0.00 0.00 2.01
4051 4500 6.268387 CCACCTTATCCTGGATTAATGCAAAT 59.732 38.462 15.55 9.73 0.00 2.32
4195 4644 1.828979 TGCTTGAATCATCTGCTGCA 58.171 45.000 0.88 0.88 0.00 4.41
4196 4645 2.422479 TCTTGCTTGAATCATCTGCTGC 59.578 45.455 0.00 0.00 0.00 5.25
4240 4689 7.834068 TCCAGAGAAATCTTTGAATTCTACG 57.166 36.000 7.05 0.00 32.71 3.51
4273 4722 3.135895 AGGGGAAATTCACGTATACAGGG 59.864 47.826 3.32 0.00 0.00 4.45
4274 4723 4.417426 AGGGGAAATTCACGTATACAGG 57.583 45.455 3.32 0.00 0.00 4.00
4275 4724 6.113411 AGAAAGGGGAAATTCACGTATACAG 58.887 40.000 3.32 0.00 0.00 2.74
4276 4725 6.057321 AGAAAGGGGAAATTCACGTATACA 57.943 37.500 3.32 0.00 0.00 2.29
4277 4726 6.822170 AGAAGAAAGGGGAAATTCACGTATAC 59.178 38.462 0.00 0.00 0.00 1.47
4278 4727 6.954232 AGAAGAAAGGGGAAATTCACGTATA 58.046 36.000 0.00 0.00 0.00 1.47
4279 4728 5.816682 AGAAGAAAGGGGAAATTCACGTAT 58.183 37.500 0.00 0.00 0.00 3.06
4280 4729 5.221762 TGAGAAGAAAGGGGAAATTCACGTA 60.222 40.000 0.00 0.00 0.00 3.57
4304 4753 6.590234 AAGTTTCAACTGGTTGTTTCTTCT 57.410 33.333 12.34 3.28 39.66 2.85
4314 4763 7.607250 TCAAATGTTACAAAGTTTCAACTGGT 58.393 30.769 9.76 0.00 39.66 4.00
4317 4766 7.319646 TGCTCAAATGTTACAAAGTTTCAACT 58.680 30.769 9.76 0.00 42.04 3.16
4360 4809 5.007724 GCATTCTGGGCAGTTAATACACTAC 59.992 44.000 0.00 0.00 0.00 2.73
4375 4824 0.742281 CTGTGAGACCGCATTCTGGG 60.742 60.000 0.00 0.00 31.63 4.45
4418 4867 6.203915 AGCATACGTGTTTGATTAAGTTGTGA 59.796 34.615 0.00 0.00 0.00 3.58
4423 4872 5.932303 ACTGAGCATACGTGTTTGATTAAGT 59.068 36.000 0.00 0.00 0.00 2.24
4438 4887 7.387643 ACATAGATACTCGAGTACTGAGCATA 58.612 38.462 26.87 12.08 36.94 3.14
4478 4941 7.339466 TCTCACTTGAGGCTTAAAAGTTTTTCT 59.661 33.333 6.10 0.16 42.30 2.52
4479 4942 7.432545 GTCTCACTTGAGGCTTAAAAGTTTTTC 59.567 37.037 6.10 0.00 43.13 2.29
4480 4943 7.093945 TGTCTCACTTGAGGCTTAAAAGTTTTT 60.094 33.333 11.95 0.00 46.41 1.94
4481 4944 6.377146 TGTCTCACTTGAGGCTTAAAAGTTTT 59.623 34.615 11.95 6.06 46.41 2.43
4488 4951 4.127171 GTTGTGTCTCACTTGAGGCTTAA 58.873 43.478 11.95 4.70 46.41 1.85
4619 5082 7.621428 ATTAACATCACTCTGAGTCATTTGG 57.379 36.000 7.49 0.00 0.00 3.28
4670 5133 0.533308 GCGTGTGTACCCTGTCCAAA 60.533 55.000 0.00 0.00 0.00 3.28
4671 5134 1.070105 GCGTGTGTACCCTGTCCAA 59.930 57.895 0.00 0.00 0.00 3.53
4677 5140 1.599797 GCAAAGGCGTGTGTACCCT 60.600 57.895 0.00 0.00 0.00 4.34
4717 5180 9.465985 TCATTTTACACATATGCAGCAAATATG 57.534 29.630 12.64 12.64 41.69 1.78
4724 5187 5.740569 CACACTCATTTTACACATATGCAGC 59.259 40.000 1.58 0.00 0.00 5.25
4729 5192 9.595823 GTAGGTACACACTCATTTTACACATAT 57.404 33.333 0.00 0.00 0.00 1.78
4733 5196 7.718272 TTGTAGGTACACACTCATTTTACAC 57.282 36.000 0.00 0.00 35.64 2.90
4742 5205 8.997621 TGATAGATTTTTGTAGGTACACACTC 57.002 34.615 0.00 0.00 35.64 3.51
4776 5250 7.661027 GGTAAGGTTTGTACATAACACCTACAA 59.339 37.037 13.93 4.39 38.00 2.41
4793 5267 9.802039 TCTAAATTACTCAATGTGGTAAGGTTT 57.198 29.630 7.35 6.67 32.51 3.27
4807 5281 7.290014 TCCATGCCTGAGTATCTAAATTACTCA 59.710 37.037 11.74 11.74 45.32 3.41
4936 5410 7.485810 TCTTTTGGACTGGTTTTAAGTTTAGC 58.514 34.615 0.00 0.00 0.00 3.09
4942 5416 9.863845 TTAGTTTTCTTTTGGACTGGTTTTAAG 57.136 29.630 0.00 0.00 0.00 1.85
4946 5421 7.903145 AGTTTAGTTTTCTTTTGGACTGGTTT 58.097 30.769 0.00 0.00 0.00 3.27
4947 5422 7.363530 GGAGTTTAGTTTTCTTTTGGACTGGTT 60.364 37.037 0.00 0.00 0.00 3.67
4973 5448 7.923888 AGCTGTTACTGCAACTTTATATGATG 58.076 34.615 16.07 0.00 38.05 3.07
4983 5458 5.063204 TGATGTTTAGCTGTTACTGCAACT 58.937 37.500 16.07 0.00 38.05 3.16
4984 5459 5.356882 TGATGTTTAGCTGTTACTGCAAC 57.643 39.130 16.07 12.30 37.67 4.17
4985 5460 5.619757 GCATGATGTTTAGCTGTTACTGCAA 60.620 40.000 16.07 6.11 0.00 4.08
4987 5462 4.142622 TGCATGATGTTTAGCTGTTACTGC 60.143 41.667 6.10 6.10 0.00 4.40
4988 5463 5.352293 TCTGCATGATGTTTAGCTGTTACTG 59.648 40.000 0.00 0.00 0.00 2.74
4989 5464 5.491070 TCTGCATGATGTTTAGCTGTTACT 58.509 37.500 0.00 0.00 0.00 2.24
4990 5465 5.801350 TCTGCATGATGTTTAGCTGTTAC 57.199 39.130 0.00 0.00 0.00 2.50
4992 5467 4.520111 TGTTCTGCATGATGTTTAGCTGTT 59.480 37.500 0.00 0.00 0.00 3.16
4993 5468 4.074259 TGTTCTGCATGATGTTTAGCTGT 58.926 39.130 0.00 0.00 0.00 4.40
4994 5469 4.690184 TGTTCTGCATGATGTTTAGCTG 57.310 40.909 0.00 0.00 0.00 4.24
5006 5481 2.291735 TGGGGATGAACATGTTCTGCAT 60.292 45.455 32.57 21.71 40.14 3.96
5022 5497 1.836391 CTGTGTGTTCACCTGGGGA 59.164 57.895 0.00 0.00 43.26 4.81
5145 5620 5.560966 AGTTTCGTTTCAGCTTTTTGAGA 57.439 34.783 0.00 0.00 0.00 3.27
5174 5649 0.536006 GCTGGCAGAGTGGTTGTTCT 60.536 55.000 20.86 0.00 0.00 3.01
5199 5674 7.372451 AGCGTGCATAGTTCTAAATAAAACA 57.628 32.000 0.00 0.00 0.00 2.83
5208 5683 2.094234 TGCTCAAGCGTGCATAGTTCTA 60.094 45.455 0.00 0.00 45.83 2.10
5216 5691 1.298264 CGTTTTGCTCAAGCGTGCA 60.298 52.632 0.00 0.00 45.83 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.