Multiple sequence alignment - TraesCS4A01G044700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G044700 chr4A 100.000 4185 0 0 1 4185 37043345 37047529 0.000000e+00 7729.0
1 TraesCS4A01G044700 chr4B 87.208 3127 242 84 216 3286 527300070 527297046 0.000000e+00 3413.0
2 TraesCS4A01G044700 chr4B 83.568 639 31 29 3482 4093 527296890 527296299 7.970000e-147 531.0
3 TraesCS4A01G044700 chr4B 88.018 217 26 0 1 217 657122541 657122325 1.490000e-64 257.0
4 TraesCS4A01G044700 chr4B 84.232 241 32 5 1 237 200409350 200409588 3.250000e-56 230.0
5 TraesCS4A01G044700 chr4B 98.551 69 1 0 4117 4185 527296168 527296100 5.680000e-24 122.0
6 TraesCS4A01G044700 chr4D 91.917 1633 77 23 1809 3404 429484689 429483075 0.000000e+00 2233.0
7 TraesCS4A01G044700 chr4D 88.873 1393 99 26 216 1584 429486171 429484811 0.000000e+00 1663.0
8 TraesCS4A01G044700 chr4D 90.835 491 17 10 3630 4093 429482666 429482177 2.120000e-177 632.0
9 TraesCS4A01G044700 chr4D 81.308 214 13 13 3427 3631 429482963 429482768 9.370000e-32 148.0
10 TraesCS4A01G044700 chr4D 97.101 69 2 0 4117 4185 429482042 429481974 2.640000e-22 117.0
11 TraesCS4A01G044700 chr4D 96.296 54 2 0 1731 1784 429484741 429484688 5.760000e-14 89.8
12 TraesCS4A01G044700 chr2D 86.916 214 25 3 2 214 590981809 590982020 1.940000e-58 237.0
13 TraesCS4A01G044700 chr5D 86.036 222 23 5 1 219 329270408 329270624 9.050000e-57 231.0
14 TraesCS4A01G044700 chr5D 85.581 215 28 3 1 214 123772948 123773160 5.450000e-54 222.0
15 TraesCS4A01G044700 chr5D 86.765 68 6 3 636 701 487302136 487302202 5.800000e-09 73.1
16 TraesCS4A01G044700 chr3D 85.321 218 29 3 1 217 21594931 21594716 5.450000e-54 222.0
17 TraesCS4A01G044700 chr1B 84.932 219 31 2 1 218 594071354 594071137 1.960000e-53 220.0
18 TraesCS4A01G044700 chr1D 84.862 218 30 3 1 217 181430873 181430658 2.530000e-52 217.0
19 TraesCS4A01G044700 chr7B 84.651 215 31 2 1 214 601129272 601129485 3.280000e-51 213.0
20 TraesCS4A01G044700 chr5B 86.667 75 7 3 628 701 599691199 599691271 3.470000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G044700 chr4A 37043345 37047529 4184 False 7729.000000 7729 100.000000 1 4185 1 chr4A.!!$F1 4184
1 TraesCS4A01G044700 chr4B 527296100 527300070 3970 True 1355.333333 3413 89.775667 216 4185 3 chr4B.!!$R2 3969
2 TraesCS4A01G044700 chr4D 429481974 429486171 4197 True 813.800000 2233 91.055000 216 4185 6 chr4D.!!$R1 3969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.033228 GGATGGTGAGAGGCGAGATG 59.967 60.0 0.0 0.0 0.0 2.90 F
1371 1405 0.044855 ACCAAGGTATGCTCTCCCCT 59.955 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1517 1551 0.375803 AACACGACAACGCAACCTTC 59.624 50.000 0.0 0.0 43.96 3.46 R
3335 3421 1.135859 CGCATCTTCACTTTCTGTGCC 60.136 52.381 0.0 0.0 45.81 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.059260 ACATGATTGAATTGAATCGACATATGA 57.941 29.630 16.39 0.00 35.43 2.15
37 38 9.326339 CATGATTGAATTGAATCGACATATGAC 57.674 33.333 10.38 1.80 35.43 3.06
38 39 8.436046 TGATTGAATTGAATCGACATATGACA 57.564 30.769 10.38 0.00 35.43 3.58
39 40 8.891720 TGATTGAATTGAATCGACATATGACAA 58.108 29.630 10.38 6.27 35.43 3.18
40 41 9.720667 GATTGAATTGAATCGACATATGACAAA 57.279 29.630 10.38 0.00 0.00 2.83
41 42 9.726232 ATTGAATTGAATCGACATATGACAAAG 57.274 29.630 10.38 0.00 0.00 2.77
42 43 7.188834 TGAATTGAATCGACATATGACAAAGC 58.811 34.615 10.38 0.00 0.00 3.51
43 44 6.682423 ATTGAATCGACATATGACAAAGCA 57.318 33.333 10.38 0.00 0.00 3.91
44 45 6.493449 TTGAATCGACATATGACAAAGCAA 57.507 33.333 10.38 4.45 0.00 3.91
45 46 6.110543 TGAATCGACATATGACAAAGCAAG 57.889 37.500 10.38 0.00 0.00 4.01
46 47 4.542662 ATCGACATATGACAAAGCAAGC 57.457 40.909 10.38 0.00 0.00 4.01
47 48 2.348362 TCGACATATGACAAAGCAAGCG 59.652 45.455 10.38 0.00 0.00 4.68
48 49 2.444351 GACATATGACAAAGCAAGCGC 58.556 47.619 10.38 0.00 38.99 5.92
49 50 1.202065 ACATATGACAAAGCAAGCGCG 60.202 47.619 10.38 0.00 45.49 6.86
50 51 1.062440 CATATGACAAAGCAAGCGCGA 59.938 47.619 12.10 0.00 45.49 5.87
51 52 1.152510 TATGACAAAGCAAGCGCGAA 58.847 45.000 12.10 0.00 45.49 4.70
52 53 0.523072 ATGACAAAGCAAGCGCGAAT 59.477 45.000 12.10 0.00 45.49 3.34
53 54 1.152510 TGACAAAGCAAGCGCGAATA 58.847 45.000 12.10 0.00 45.49 1.75
54 55 1.533299 TGACAAAGCAAGCGCGAATAA 59.467 42.857 12.10 0.00 45.49 1.40
55 56 2.031595 TGACAAAGCAAGCGCGAATAAA 60.032 40.909 12.10 0.00 45.49 1.40
56 57 3.171277 GACAAAGCAAGCGCGAATAAAT 58.829 40.909 12.10 0.00 45.49 1.40
57 58 2.916716 ACAAAGCAAGCGCGAATAAATG 59.083 40.909 12.10 2.10 45.49 2.32
58 59 3.170505 CAAAGCAAGCGCGAATAAATGA 58.829 40.909 12.10 0.00 45.49 2.57
59 60 3.485947 AAGCAAGCGCGAATAAATGAA 57.514 38.095 12.10 0.00 45.49 2.57
60 61 3.485947 AGCAAGCGCGAATAAATGAAA 57.514 38.095 12.10 0.00 45.49 2.69
61 62 3.429085 AGCAAGCGCGAATAAATGAAAG 58.571 40.909 12.10 0.00 45.49 2.62
62 63 2.531508 GCAAGCGCGAATAAATGAAAGG 59.468 45.455 12.10 0.00 0.00 3.11
63 64 3.730662 GCAAGCGCGAATAAATGAAAGGA 60.731 43.478 12.10 0.00 0.00 3.36
64 65 3.951979 AGCGCGAATAAATGAAAGGAG 57.048 42.857 12.10 0.00 0.00 3.69
65 66 3.270877 AGCGCGAATAAATGAAAGGAGT 58.729 40.909 12.10 0.00 0.00 3.85
66 67 4.439057 AGCGCGAATAAATGAAAGGAGTA 58.561 39.130 12.10 0.00 0.00 2.59
67 68 5.057149 AGCGCGAATAAATGAAAGGAGTAT 58.943 37.500 12.10 0.00 0.00 2.12
68 69 5.177696 AGCGCGAATAAATGAAAGGAGTATC 59.822 40.000 12.10 0.00 0.00 2.24
69 70 5.050363 GCGCGAATAAATGAAAGGAGTATCA 60.050 40.000 12.10 0.00 36.25 2.15
70 71 6.511121 GCGCGAATAAATGAAAGGAGTATCAA 60.511 38.462 12.10 0.00 36.25 2.57
71 72 7.065894 CGCGAATAAATGAAAGGAGTATCAAG 58.934 38.462 0.00 0.00 36.25 3.02
72 73 6.853362 GCGAATAAATGAAAGGAGTATCAAGC 59.147 38.462 0.00 0.00 36.25 4.01
73 74 7.065894 CGAATAAATGAAAGGAGTATCAAGCG 58.934 38.462 0.00 0.00 36.25 4.68
74 75 7.254455 CGAATAAATGAAAGGAGTATCAAGCGT 60.254 37.037 0.00 0.00 36.25 5.07
75 76 5.551760 AAATGAAAGGAGTATCAAGCGTG 57.448 39.130 0.00 0.00 36.25 5.34
76 77 3.953712 TGAAAGGAGTATCAAGCGTGA 57.046 42.857 4.40 4.40 36.25 4.35
77 78 4.471904 TGAAAGGAGTATCAAGCGTGAT 57.528 40.909 19.10 19.10 46.52 3.06
78 79 4.832248 TGAAAGGAGTATCAAGCGTGATT 58.168 39.130 20.26 3.37 42.03 2.57
79 80 4.870426 TGAAAGGAGTATCAAGCGTGATTC 59.130 41.667 20.26 15.04 42.03 2.52
80 81 3.085443 AGGAGTATCAAGCGTGATTCG 57.915 47.619 20.26 0.00 42.03 3.34
81 82 2.688446 AGGAGTATCAAGCGTGATTCGA 59.312 45.455 20.26 0.00 42.03 3.71
82 83 3.319405 AGGAGTATCAAGCGTGATTCGAT 59.681 43.478 20.26 4.59 42.03 3.59
84 85 4.508124 GGAGTATCAAGCGTGATTCGATTT 59.492 41.667 20.26 0.00 46.04 2.17
85 86 5.006746 GGAGTATCAAGCGTGATTCGATTTT 59.993 40.000 20.26 0.00 46.04 1.82
86 87 6.200286 GGAGTATCAAGCGTGATTCGATTTTA 59.800 38.462 20.26 0.00 46.04 1.52
87 88 7.254319 GGAGTATCAAGCGTGATTCGATTTTAA 60.254 37.037 20.26 0.00 46.04 1.52
88 89 7.621991 AGTATCAAGCGTGATTCGATTTTAAG 58.378 34.615 20.26 0.00 46.04 1.85
89 90 5.856126 TCAAGCGTGATTCGATTTTAAGT 57.144 34.783 0.00 0.00 46.04 2.24
90 91 5.617609 TCAAGCGTGATTCGATTTTAAGTG 58.382 37.500 0.00 0.00 46.04 3.16
91 92 4.003519 AGCGTGATTCGATTTTAAGTGC 57.996 40.909 0.00 0.00 42.86 4.40
92 93 2.770865 GCGTGATTCGATTTTAAGTGCG 59.229 45.455 0.00 0.00 42.86 5.34
93 94 3.482923 GCGTGATTCGATTTTAAGTGCGA 60.483 43.478 0.00 0.00 42.86 5.10
94 95 4.634000 CGTGATTCGATTTTAAGTGCGAA 58.366 39.130 0.00 0.00 45.25 4.70
95 96 4.719164 CGTGATTCGATTTTAAGTGCGAAG 59.281 41.667 0.00 0.00 44.53 3.79
96 97 5.444087 CGTGATTCGATTTTAAGTGCGAAGA 60.444 40.000 0.00 0.00 44.53 2.87
97 98 6.304126 GTGATTCGATTTTAAGTGCGAAGAA 58.696 36.000 0.00 0.00 44.53 2.52
98 99 6.462949 GTGATTCGATTTTAAGTGCGAAGAAG 59.537 38.462 0.00 0.00 44.53 2.85
99 100 6.367695 TGATTCGATTTTAAGTGCGAAGAAGA 59.632 34.615 0.00 0.00 44.53 2.87
100 101 6.533819 TTCGATTTTAAGTGCGAAGAAGAA 57.466 33.333 0.00 0.00 37.77 2.52
101 102 6.533819 TCGATTTTAAGTGCGAAGAAGAAA 57.466 33.333 0.00 0.00 0.00 2.52
102 103 6.950545 TCGATTTTAAGTGCGAAGAAGAAAA 58.049 32.000 0.00 0.00 0.00 2.29
103 104 7.411274 TCGATTTTAAGTGCGAAGAAGAAAAA 58.589 30.769 0.00 0.00 0.00 1.94
124 125 6.780457 AAAAATAATGTGAGAGGGATGGTG 57.220 37.500 0.00 0.00 0.00 4.17
125 126 5.715439 AAATAATGTGAGAGGGATGGTGA 57.285 39.130 0.00 0.00 0.00 4.02
126 127 4.970860 ATAATGTGAGAGGGATGGTGAG 57.029 45.455 0.00 0.00 0.00 3.51
127 128 2.557555 ATGTGAGAGGGATGGTGAGA 57.442 50.000 0.00 0.00 0.00 3.27
128 129 1.857965 TGTGAGAGGGATGGTGAGAG 58.142 55.000 0.00 0.00 0.00 3.20
129 130 1.118838 GTGAGAGGGATGGTGAGAGG 58.881 60.000 0.00 0.00 0.00 3.69
130 131 0.689080 TGAGAGGGATGGTGAGAGGC 60.689 60.000 0.00 0.00 0.00 4.70
131 132 1.743321 GAGAGGGATGGTGAGAGGCG 61.743 65.000 0.00 0.00 0.00 5.52
132 133 1.758514 GAGGGATGGTGAGAGGCGA 60.759 63.158 0.00 0.00 0.00 5.54
133 134 1.743321 GAGGGATGGTGAGAGGCGAG 61.743 65.000 0.00 0.00 0.00 5.03
134 135 1.758514 GGGATGGTGAGAGGCGAGA 60.759 63.158 0.00 0.00 0.00 4.04
135 136 1.118356 GGGATGGTGAGAGGCGAGAT 61.118 60.000 0.00 0.00 0.00 2.75
136 137 0.033228 GGATGGTGAGAGGCGAGATG 59.967 60.000 0.00 0.00 0.00 2.90
137 138 1.035923 GATGGTGAGAGGCGAGATGA 58.964 55.000 0.00 0.00 0.00 2.92
138 139 1.410517 GATGGTGAGAGGCGAGATGAA 59.589 52.381 0.00 0.00 0.00 2.57
139 140 1.266178 TGGTGAGAGGCGAGATGAAA 58.734 50.000 0.00 0.00 0.00 2.69
140 141 1.623311 TGGTGAGAGGCGAGATGAAAA 59.377 47.619 0.00 0.00 0.00 2.29
141 142 2.237143 TGGTGAGAGGCGAGATGAAAAT 59.763 45.455 0.00 0.00 0.00 1.82
142 143 3.450817 TGGTGAGAGGCGAGATGAAAATA 59.549 43.478 0.00 0.00 0.00 1.40
143 144 4.081142 TGGTGAGAGGCGAGATGAAAATAA 60.081 41.667 0.00 0.00 0.00 1.40
144 145 4.876107 GGTGAGAGGCGAGATGAAAATAAA 59.124 41.667 0.00 0.00 0.00 1.40
145 146 5.220681 GGTGAGAGGCGAGATGAAAATAAAC 60.221 44.000 0.00 0.00 0.00 2.01
146 147 4.876107 TGAGAGGCGAGATGAAAATAAACC 59.124 41.667 0.00 0.00 0.00 3.27
147 148 3.871594 AGAGGCGAGATGAAAATAAACCG 59.128 43.478 0.00 0.00 0.00 4.44
148 149 3.869065 AGGCGAGATGAAAATAAACCGA 58.131 40.909 0.00 0.00 0.00 4.69
149 150 3.621715 AGGCGAGATGAAAATAAACCGAC 59.378 43.478 0.00 0.00 0.00 4.79
150 151 3.543460 GGCGAGATGAAAATAAACCGACG 60.543 47.826 0.00 0.00 0.00 5.12
151 152 3.305094 GCGAGATGAAAATAAACCGACGA 59.695 43.478 0.00 0.00 0.00 4.20
152 153 4.201647 GCGAGATGAAAATAAACCGACGAA 60.202 41.667 0.00 0.00 0.00 3.85
153 154 5.669357 GCGAGATGAAAATAAACCGACGAAA 60.669 40.000 0.00 0.00 0.00 3.46
154 155 6.301108 CGAGATGAAAATAAACCGACGAAAA 58.699 36.000 0.00 0.00 0.00 2.29
155 156 6.245710 CGAGATGAAAATAAACCGACGAAAAC 59.754 38.462 0.00 0.00 0.00 2.43
156 157 7.198306 AGATGAAAATAAACCGACGAAAACT 57.802 32.000 0.00 0.00 0.00 2.66
157 158 8.314143 AGATGAAAATAAACCGACGAAAACTA 57.686 30.769 0.00 0.00 0.00 2.24
158 159 8.776470 AGATGAAAATAAACCGACGAAAACTAA 58.224 29.630 0.00 0.00 0.00 2.24
159 160 8.718047 ATGAAAATAAACCGACGAAAACTAAC 57.282 30.769 0.00 0.00 0.00 2.34
160 161 7.131565 TGAAAATAAACCGACGAAAACTAACC 58.868 34.615 0.00 0.00 0.00 2.85
161 162 6.616774 AAATAAACCGACGAAAACTAACCA 57.383 33.333 0.00 0.00 0.00 3.67
162 163 5.851047 ATAAACCGACGAAAACTAACCAG 57.149 39.130 0.00 0.00 0.00 4.00
163 164 2.159327 ACCGACGAAAACTAACCAGG 57.841 50.000 0.00 0.00 0.00 4.45
164 165 0.794473 CCGACGAAAACTAACCAGGC 59.206 55.000 0.00 0.00 0.00 4.85
165 166 0.437295 CGACGAAAACTAACCAGGCG 59.563 55.000 0.00 0.00 0.00 5.52
166 167 1.787012 GACGAAAACTAACCAGGCGA 58.213 50.000 0.00 0.00 0.00 5.54
167 168 2.137523 GACGAAAACTAACCAGGCGAA 58.862 47.619 0.00 0.00 0.00 4.70
168 169 2.545106 GACGAAAACTAACCAGGCGAAA 59.455 45.455 0.00 0.00 0.00 3.46
169 170 2.944349 ACGAAAACTAACCAGGCGAAAA 59.056 40.909 0.00 0.00 0.00 2.29
170 171 3.377798 ACGAAAACTAACCAGGCGAAAAA 59.622 39.130 0.00 0.00 0.00 1.94
194 195 8.593945 AAAAATCATGAAGGCTATTCTACCAA 57.406 30.769 0.00 0.00 0.00 3.67
195 196 7.573968 AAATCATGAAGGCTATTCTACCAAC 57.426 36.000 0.00 0.00 0.00 3.77
196 197 5.957771 TCATGAAGGCTATTCTACCAACT 57.042 39.130 0.00 0.00 0.00 3.16
197 198 5.674525 TCATGAAGGCTATTCTACCAACTG 58.325 41.667 0.00 0.00 0.00 3.16
198 199 5.425217 TCATGAAGGCTATTCTACCAACTGA 59.575 40.000 0.00 0.00 0.00 3.41
199 200 5.344743 TGAAGGCTATTCTACCAACTGAG 57.655 43.478 0.00 0.00 0.00 3.35
200 201 5.023452 TGAAGGCTATTCTACCAACTGAGA 58.977 41.667 0.00 0.00 0.00 3.27
201 202 5.105310 TGAAGGCTATTCTACCAACTGAGAC 60.105 44.000 0.00 0.00 0.00 3.36
202 203 4.353777 AGGCTATTCTACCAACTGAGACA 58.646 43.478 0.00 0.00 0.00 3.41
203 204 4.965532 AGGCTATTCTACCAACTGAGACAT 59.034 41.667 0.00 0.00 0.00 3.06
204 205 5.426833 AGGCTATTCTACCAACTGAGACATT 59.573 40.000 0.00 0.00 0.00 2.71
205 206 6.611642 AGGCTATTCTACCAACTGAGACATTA 59.388 38.462 0.00 0.00 0.00 1.90
206 207 6.926272 GGCTATTCTACCAACTGAGACATTAG 59.074 42.308 0.00 0.00 0.00 1.73
207 208 6.926272 GCTATTCTACCAACTGAGACATTAGG 59.074 42.308 0.00 0.00 0.00 2.69
208 209 7.201920 GCTATTCTACCAACTGAGACATTAGGA 60.202 40.741 0.00 0.00 0.00 2.94
209 210 6.531503 TTCTACCAACTGAGACATTAGGAG 57.468 41.667 0.00 0.00 0.00 3.69
210 211 5.580998 TCTACCAACTGAGACATTAGGAGT 58.419 41.667 0.00 0.00 0.00 3.85
211 212 6.728411 TCTACCAACTGAGACATTAGGAGTA 58.272 40.000 0.00 0.00 0.00 2.59
212 213 5.923733 ACCAACTGAGACATTAGGAGTAG 57.076 43.478 0.00 0.00 0.00 2.57
213 214 5.580998 ACCAACTGAGACATTAGGAGTAGA 58.419 41.667 0.00 0.00 0.00 2.59
214 215 6.017192 ACCAACTGAGACATTAGGAGTAGAA 58.983 40.000 0.00 0.00 0.00 2.10
320 323 7.698836 AACAAATCGATGGAAAAAGAAACAG 57.301 32.000 0.00 0.00 0.00 3.16
425 436 3.408634 CAAAACCGGTACATGAGAGGTT 58.591 45.455 8.00 6.76 45.99 3.50
427 438 1.640917 ACCGGTACATGAGAGGTTGT 58.359 50.000 4.49 0.00 0.00 3.32
430 442 1.739067 GGTACATGAGAGGTTGTGGC 58.261 55.000 0.00 0.00 0.00 5.01
433 445 0.767375 ACATGAGAGGTTGTGGCACT 59.233 50.000 19.83 0.00 0.00 4.40
449 462 2.439880 GGCACTCCTCCTATAAAAGGCT 59.560 50.000 0.00 0.00 46.10 4.58
473 486 1.202486 TCTTCAGTTCTTTCGCCGTGT 60.202 47.619 0.00 0.00 0.00 4.49
476 489 1.148310 CAGTTCTTTCGCCGTGTCAT 58.852 50.000 0.00 0.00 0.00 3.06
516 529 7.715265 AAAAACATACACACAACAACAACAA 57.285 28.000 0.00 0.00 0.00 2.83
517 530 6.698359 AAACATACACACAACAACAACAAC 57.302 33.333 0.00 0.00 0.00 3.32
519 532 5.773575 ACATACACACAACAACAACAACAA 58.226 33.333 0.00 0.00 0.00 2.83
533 546 2.953020 ACAACAACAACACACGCAATT 58.047 38.095 0.00 0.00 0.00 2.32
538 551 4.926244 ACAACAACACACGCAATTCATAA 58.074 34.783 0.00 0.00 0.00 1.90
552 566 6.073331 CGCAATTCATAAAACCCACAAAACAT 60.073 34.615 0.00 0.00 0.00 2.71
611 625 1.002134 CCCGCCAGGAGACAAACAT 60.002 57.895 0.00 0.00 41.02 2.71
617 631 0.957395 CAGGAGACAAACATGCGCCT 60.957 55.000 4.18 0.00 0.00 5.52
620 634 1.089920 GAGACAAACATGCGCCTGAT 58.910 50.000 19.95 4.43 0.00 2.90
630 644 1.659954 GCGCCTGATAGCAGAGACG 60.660 63.158 10.19 11.24 45.17 4.18
648 662 2.477375 GACGAACCTTTTGCACGTATCA 59.523 45.455 0.00 0.00 37.32 2.15
663 677 7.862648 TGCACGTATCAAACAACAACTAATTA 58.137 30.769 0.00 0.00 0.00 1.40
664 678 8.012809 TGCACGTATCAAACAACAACTAATTAG 58.987 33.333 11.05 11.05 0.00 1.73
796 811 2.658373 GGAGTCTTTCCGTCTCTTCC 57.342 55.000 0.00 0.00 35.91 3.46
797 812 1.205179 GGAGTCTTTCCGTCTCTTCCC 59.795 57.143 0.00 0.00 35.91 3.97
799 814 1.203199 AGTCTTTCCGTCTCTTCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
801 816 2.038689 GTCTTTCCGTCTCTTCCCCTTT 59.961 50.000 0.00 0.00 0.00 3.11
802 817 2.709397 TCTTTCCGTCTCTTCCCCTTTT 59.291 45.455 0.00 0.00 0.00 2.27
803 818 3.137728 TCTTTCCGTCTCTTCCCCTTTTT 59.862 43.478 0.00 0.00 0.00 1.94
822 841 4.823790 TTTAACCAAAAGAAGAGACGGC 57.176 40.909 0.00 0.00 0.00 5.68
861 892 2.170166 CTATTGGGCCAAGCTTCAACA 58.830 47.619 25.16 0.00 0.00 3.33
918 949 2.108976 CATCCGTCCATCCACCCG 59.891 66.667 0.00 0.00 0.00 5.28
956 987 1.633432 ACGATGGAATGGAAACCCTCA 59.367 47.619 0.00 0.00 0.00 3.86
995 1029 0.320374 CTCGCCTGTGTAGGGTTTCA 59.680 55.000 0.00 0.00 44.75 2.69
996 1030 0.981183 TCGCCTGTGTAGGGTTTCAT 59.019 50.000 0.00 0.00 44.75 2.57
1117 1151 3.304970 TCCAAGGGGAGGAAGGGA 58.695 61.111 0.00 0.00 38.64 4.20
1168 1202 4.214383 CGCTCATCCGTTGCAGCG 62.214 66.667 16.72 16.72 41.78 5.18
1190 1224 4.201920 CGTCGTGATCTAGGATCTGTTTCA 60.202 45.833 8.66 0.00 0.00 2.69
1201 1235 4.408596 AGGATCTGTTTCATCTCCTCTTCC 59.591 45.833 0.00 0.00 30.45 3.46
1203 1237 5.453198 GGATCTGTTTCATCTCCTCTTCCTC 60.453 48.000 0.00 0.00 0.00 3.71
1205 1239 3.774216 CTGTTTCATCTCCTCTTCCTCCT 59.226 47.826 0.00 0.00 0.00 3.69
1233 1267 1.153958 GATGCGGTTTCTTGCCTGC 60.154 57.895 0.00 0.00 0.00 4.85
1345 1379 2.989824 ACCCTCGTGTCCAGGACG 60.990 66.667 15.24 4.66 34.95 4.79
1371 1405 0.044855 ACCAAGGTATGCTCTCCCCT 59.955 55.000 0.00 0.00 0.00 4.79
1426 1460 3.010472 TCCATTGATGTCTTGTGTCCCAT 59.990 43.478 0.00 0.00 0.00 4.00
1440 1474 3.129287 GTGTCCCATGGATTAGCTGTTTG 59.871 47.826 15.22 0.00 32.73 2.93
1446 1480 5.397447 CCCATGGATTAGCTGTTTGGTAGTA 60.397 44.000 15.22 0.00 0.00 1.82
1456 1490 2.289565 GTTTGGTAGTATGCCTGCTCC 58.710 52.381 0.00 0.00 43.60 4.70
1457 1491 1.879575 TTGGTAGTATGCCTGCTCCT 58.120 50.000 0.00 0.00 43.60 3.69
1479 1513 8.897872 TCCTATATACGCGATTGTGATCTATA 57.102 34.615 15.93 0.97 0.00 1.31
1505 1539 3.631686 TCCTATTGGCATGAAACGGATTG 59.368 43.478 0.00 0.00 0.00 2.67
1517 1551 5.527951 TGAAACGGATTGAACCATTTTCTG 58.472 37.500 0.00 0.00 34.93 3.02
1526 1561 3.243367 TGAACCATTTTCTGAAGGTTGCG 60.243 43.478 14.93 2.17 43.94 4.85
1531 1566 3.414549 TTTTCTGAAGGTTGCGTTGTC 57.585 42.857 0.00 0.00 0.00 3.18
1540 1575 1.328374 GGTTGCGTTGTCGTGTTAAGT 59.672 47.619 0.00 0.00 39.49 2.24
1547 1582 3.242155 CGTTGTCGTGTTAAGTGCTGAAA 60.242 43.478 0.00 0.00 0.00 2.69
1549 1584 2.869801 TGTCGTGTTAAGTGCTGAAAGG 59.130 45.455 0.00 0.00 0.00 3.11
1557 1592 1.726853 AGTGCTGAAAGGCGTGATAC 58.273 50.000 0.00 0.00 34.52 2.24
1558 1593 1.001974 AGTGCTGAAAGGCGTGATACA 59.998 47.619 0.00 0.00 34.52 2.29
1559 1594 1.128692 GTGCTGAAAGGCGTGATACAC 59.871 52.381 0.00 0.00 34.52 2.90
1560 1595 1.001974 TGCTGAAAGGCGTGATACACT 59.998 47.619 0.00 0.00 34.52 3.55
1561 1596 2.232696 TGCTGAAAGGCGTGATACACTA 59.767 45.455 0.00 0.00 34.52 2.74
1562 1597 2.860735 GCTGAAAGGCGTGATACACTAG 59.139 50.000 0.00 0.00 31.34 2.57
1563 1598 2.860735 CTGAAAGGCGTGATACACTAGC 59.139 50.000 0.00 0.00 31.34 3.42
1568 1609 3.021695 AGGCGTGATACACTAGCACTAA 58.978 45.455 0.00 0.00 42.56 2.24
1587 1628 8.285776 GCACTAAAATGCAATCGCTATTATTT 57.714 30.769 0.00 0.00 45.39 1.40
1588 1629 9.393249 GCACTAAAATGCAATCGCTATTATTTA 57.607 29.630 0.00 0.00 45.39 1.40
1615 1656 8.426569 AAACTATACTTTGTGTACCCTACTGA 57.573 34.615 0.00 0.00 33.45 3.41
1616 1657 8.605325 AACTATACTTTGTGTACCCTACTGAT 57.395 34.615 0.00 0.00 33.45 2.90
1617 1658 9.705103 AACTATACTTTGTGTACCCTACTGATA 57.295 33.333 0.00 0.00 33.45 2.15
1668 1712 3.407424 TTGTCTCACCAATGTCTCTGG 57.593 47.619 0.00 0.00 40.05 3.86
1681 1725 3.286353 TGTCTCTGGTGCAATTTGTGAA 58.714 40.909 0.00 0.00 0.00 3.18
1682 1726 3.890756 TGTCTCTGGTGCAATTTGTGAAT 59.109 39.130 0.00 0.00 0.00 2.57
1683 1727 4.022935 TGTCTCTGGTGCAATTTGTGAATC 60.023 41.667 0.00 0.00 0.00 2.52
1684 1728 4.022935 GTCTCTGGTGCAATTTGTGAATCA 60.023 41.667 0.00 0.00 0.00 2.57
1685 1729 4.216902 TCTCTGGTGCAATTTGTGAATCAG 59.783 41.667 0.00 1.38 0.00 2.90
1686 1730 2.991190 CTGGTGCAATTTGTGAATCAGC 59.009 45.455 0.00 0.00 0.00 4.26
1687 1731 2.288948 TGGTGCAATTTGTGAATCAGCC 60.289 45.455 0.00 0.00 0.00 4.85
1688 1732 2.340337 GTGCAATTTGTGAATCAGCCC 58.660 47.619 0.00 0.00 0.00 5.19
1689 1733 2.028748 GTGCAATTTGTGAATCAGCCCT 60.029 45.455 0.00 0.00 0.00 5.19
1690 1734 2.633967 TGCAATTTGTGAATCAGCCCTT 59.366 40.909 0.00 0.00 0.00 3.95
1691 1735 3.831333 TGCAATTTGTGAATCAGCCCTTA 59.169 39.130 0.00 0.00 0.00 2.69
1692 1736 4.282957 TGCAATTTGTGAATCAGCCCTTAA 59.717 37.500 0.00 0.00 0.00 1.85
1693 1737 4.866486 GCAATTTGTGAATCAGCCCTTAAG 59.134 41.667 0.00 0.00 0.00 1.85
1702 1746 5.885912 TGAATCAGCCCTTAAGTATGAAACC 59.114 40.000 0.97 0.00 0.00 3.27
1704 1748 5.249780 TCAGCCCTTAAGTATGAAACCAA 57.750 39.130 0.97 0.00 0.00 3.67
1724 1768 5.221481 ACCAAATCATGCATCTTGTTTCACA 60.221 36.000 0.00 0.00 0.00 3.58
1733 1777 3.763097 TCTTGTTTCACACTTGCACAG 57.237 42.857 0.00 0.00 0.00 3.66
1782 1826 4.339814 CACCTGTTTTTAAACTAGCACCCA 59.660 41.667 6.87 0.00 39.59 4.51
1828 1872 7.744087 ATCAAGCATTCAAGTGTTGTTAGTA 57.256 32.000 0.00 0.00 0.00 1.82
1836 1880 6.114221 TCAAGTGTTGTTAGTAGTTTGTGC 57.886 37.500 0.00 0.00 0.00 4.57
1857 1901 6.014584 TGTGCTTGGTCTAACTGATTCTTCTA 60.015 38.462 0.00 0.00 0.00 2.10
1875 1919 5.708697 TCTTCTAACTGTGTTCCTATGTCGA 59.291 40.000 0.00 0.00 0.00 4.20
1886 1930 4.937201 TCCTATGTCGAATGTGTAGCAT 57.063 40.909 0.00 0.00 40.03 3.79
1888 1932 5.670485 TCCTATGTCGAATGTGTAGCATTT 58.330 37.500 0.00 0.00 46.90 2.32
1903 1947 5.764686 TGTAGCATTTGACACACTGAATCTT 59.235 36.000 0.00 0.00 0.00 2.40
1904 1948 5.779529 AGCATTTGACACACTGAATCTTT 57.220 34.783 0.00 0.00 0.00 2.52
1905 1949 6.882610 AGCATTTGACACACTGAATCTTTA 57.117 33.333 0.00 0.00 0.00 1.85
1909 1953 8.642020 GCATTTGACACACTGAATCTTTATTTC 58.358 33.333 0.00 0.00 0.00 2.17
1919 1963 9.780413 CACTGAATCTTTATTTCTAAGCCTTTC 57.220 33.333 0.00 0.00 0.00 2.62
1933 1977 8.225603 TCTAAGCCTTTCCATTTACATTCATC 57.774 34.615 0.00 0.00 0.00 2.92
1957 2001 9.912634 ATCTAGGAATGTGTTTAATGTTTGTTG 57.087 29.630 0.00 0.00 0.00 3.33
1966 2010 9.477484 TGTGTTTAATGTTTGTTGTTGTAAGTT 57.523 25.926 0.00 0.00 0.00 2.66
1967 2011 9.734269 GTGTTTAATGTTTGTTGTTGTAAGTTG 57.266 29.630 0.00 0.00 0.00 3.16
1969 2013 9.946418 GTTTAATGTTTGTTGTTGTAAGTTGAC 57.054 29.630 0.00 0.00 0.00 3.18
2154 2205 6.656693 CACAAACTTCTGGGTAATGATCTCTT 59.343 38.462 0.00 0.00 0.00 2.85
2211 2262 5.767816 TTTTCCTTTGCTAACCTGTTCTC 57.232 39.130 0.00 0.00 0.00 2.87
2416 2467 6.150140 GCAAGTCAGATCAGACAGGTAAATTT 59.850 38.462 19.13 0.00 40.98 1.82
2419 2470 7.227156 AGTCAGATCAGACAGGTAAATTTGTT 58.773 34.615 19.13 0.00 40.98 2.83
2426 2477 6.039270 TCAGACAGGTAAATTTGTTCACCTTG 59.961 38.462 7.51 5.10 39.40 3.61
2430 2481 5.010012 CAGGTAAATTTGTTCACCTTGCTCT 59.990 40.000 7.51 0.00 39.40 4.09
2629 2680 1.558756 AGATTGAGAAGGCCACCTCAG 59.441 52.381 21.30 0.00 40.13 3.35
2766 2818 7.043565 ACTGAAAATATTTTAGCTGGGCATTG 58.956 34.615 13.34 0.00 0.00 2.82
2771 2823 7.472334 AATATTTTAGCTGGGCATTGGATAG 57.528 36.000 0.00 0.00 0.00 2.08
2772 2824 4.518278 TTTTAGCTGGGCATTGGATAGA 57.482 40.909 0.00 0.00 0.00 1.98
2773 2825 3.492102 TTAGCTGGGCATTGGATAGAC 57.508 47.619 0.00 0.00 0.00 2.59
2774 2826 1.216064 AGCTGGGCATTGGATAGACA 58.784 50.000 0.00 0.00 0.00 3.41
2775 2827 1.142465 AGCTGGGCATTGGATAGACAG 59.858 52.381 0.00 0.00 0.00 3.51
2776 2828 1.602311 CTGGGCATTGGATAGACAGC 58.398 55.000 0.00 0.00 0.00 4.40
2802 2856 7.148787 CGTTAATTGTTGTTCTCCAGTCTACTC 60.149 40.741 0.00 0.00 0.00 2.59
2940 2994 0.248565 TTGCTGCTGCTGAGTAGAGG 59.751 55.000 17.00 0.00 40.48 3.69
2949 3003 4.340950 GCTGCTGAGTAGAGGATAGAAGTT 59.659 45.833 0.47 0.00 0.00 2.66
3066 3120 1.478510 CTGTCGACATTCCTAGCCAGT 59.521 52.381 20.40 0.00 0.00 4.00
3071 3125 2.633488 GACATTCCTAGCCAGTGTTCC 58.367 52.381 0.00 0.00 0.00 3.62
3111 3166 4.081862 CGTGTTACTTTCTGGATGGAGGTA 60.082 45.833 0.00 0.00 0.00 3.08
3185 3242 7.556275 TGTTTGAATAGAACTTGTCCTCTGTTT 59.444 33.333 0.00 0.00 0.00 2.83
3187 3244 7.496529 TGAATAGAACTTGTCCTCTGTTTTG 57.503 36.000 0.00 0.00 0.00 2.44
3190 3247 8.974060 AATAGAACTTGTCCTCTGTTTTGTTA 57.026 30.769 0.00 0.00 0.00 2.41
3191 3248 6.927294 AGAACTTGTCCTCTGTTTTGTTAG 57.073 37.500 0.00 0.00 0.00 2.34
3193 3250 6.884836 AGAACTTGTCCTCTGTTTTGTTAGTT 59.115 34.615 0.00 0.00 0.00 2.24
3227 3289 3.775202 ACTTTTTGTTTGCGTGCATACA 58.225 36.364 13.00 13.00 36.42 2.29
3258 3324 1.807886 CTTGCAATGGCTCCAGCTC 59.192 57.895 0.00 0.00 41.91 4.09
3263 3329 2.739996 AATGGCTCCAGCTCCTCCG 61.740 63.158 0.00 0.00 41.70 4.63
3286 3352 2.317040 CCAAGATAGCCCTCCGTCTTA 58.683 52.381 0.00 0.00 30.29 2.10
3287 3353 2.900546 CCAAGATAGCCCTCCGTCTTAT 59.099 50.000 0.00 0.00 30.29 1.73
3288 3354 3.325135 CCAAGATAGCCCTCCGTCTTATT 59.675 47.826 0.00 0.00 30.29 1.40
3289 3355 4.202367 CCAAGATAGCCCTCCGTCTTATTT 60.202 45.833 0.00 0.00 30.29 1.40
3290 3356 4.608948 AGATAGCCCTCCGTCTTATTTG 57.391 45.455 0.00 0.00 0.00 2.32
3297 3383 3.705072 CCCTCCGTCTTATTTGTAGGAGT 59.295 47.826 8.28 0.00 42.59 3.85
3335 3421 0.620556 ATGTGCTCCCCCAGTTAGTG 59.379 55.000 0.00 0.00 0.00 2.74
3358 3444 3.126001 ACAGAAAGTGAAGATGCGGAA 57.874 42.857 0.00 0.00 0.00 4.30
3359 3445 3.476552 ACAGAAAGTGAAGATGCGGAAA 58.523 40.909 0.00 0.00 0.00 3.13
3360 3446 3.882888 ACAGAAAGTGAAGATGCGGAAAA 59.117 39.130 0.00 0.00 0.00 2.29
3361 3447 4.023707 ACAGAAAGTGAAGATGCGGAAAAG 60.024 41.667 0.00 0.00 0.00 2.27
3362 3448 4.214119 CAGAAAGTGAAGATGCGGAAAAGA 59.786 41.667 0.00 0.00 0.00 2.52
3363 3449 4.821805 AGAAAGTGAAGATGCGGAAAAGAA 59.178 37.500 0.00 0.00 0.00 2.52
3364 3450 5.299279 AGAAAGTGAAGATGCGGAAAAGAAA 59.701 36.000 0.00 0.00 0.00 2.52
3373 3459 2.817258 TGCGGAAAAGAAAATGGATCGT 59.183 40.909 0.00 0.00 0.00 3.73
3434 3570 5.651172 TTGACTGCAATATGTACATACGC 57.349 39.130 23.19 23.19 0.00 4.42
3435 3571 4.688021 TGACTGCAATATGTACATACGCA 58.312 39.130 27.53 27.53 35.24 5.24
3476 3651 3.998341 TGTAGCGACAAGTAATTTGGGAC 59.002 43.478 0.00 0.00 41.25 4.46
3478 3653 2.070783 GCGACAAGTAATTTGGGACGA 58.929 47.619 0.00 0.00 41.25 4.20
3480 3655 3.424433 GCGACAAGTAATTTGGGACGAAG 60.424 47.826 0.00 0.00 41.25 3.79
3507 3721 2.758423 GTGACAAGGGTTCCAAAACTGT 59.242 45.455 0.00 0.00 35.61 3.55
3551 3765 2.957402 AGAGATCAAACTGGTTGGCA 57.043 45.000 5.47 0.00 37.85 4.92
3552 3766 3.446442 AGAGATCAAACTGGTTGGCAT 57.554 42.857 5.47 0.00 37.85 4.40
3553 3767 3.771216 AGAGATCAAACTGGTTGGCATT 58.229 40.909 5.47 0.00 37.85 3.56
3555 3769 4.946157 AGAGATCAAACTGGTTGGCATTAG 59.054 41.667 5.47 0.00 37.85 1.73
3556 3770 4.922206 AGATCAAACTGGTTGGCATTAGA 58.078 39.130 5.47 0.00 37.85 2.10
3557 3771 5.513233 AGATCAAACTGGTTGGCATTAGAT 58.487 37.500 5.47 0.00 37.85 1.98
3558 3772 6.662755 AGATCAAACTGGTTGGCATTAGATA 58.337 36.000 5.47 0.00 37.85 1.98
3559 3773 7.118723 AGATCAAACTGGTTGGCATTAGATAA 58.881 34.615 5.47 0.00 37.85 1.75
3560 3774 7.615365 AGATCAAACTGGTTGGCATTAGATAAA 59.385 33.333 5.47 0.00 37.85 1.40
3561 3775 7.716799 TCAAACTGGTTGGCATTAGATAAAT 57.283 32.000 5.47 0.00 37.85 1.40
3562 3776 7.771183 TCAAACTGGTTGGCATTAGATAAATC 58.229 34.615 5.47 0.00 37.85 2.17
3563 3777 7.395772 TCAAACTGGTTGGCATTAGATAAATCA 59.604 33.333 5.47 0.00 37.85 2.57
3581 3795 8.907222 ATAAATCAAAGAAAATGTTGTTGGCT 57.093 26.923 0.00 0.00 0.00 4.75
3584 3798 8.729805 AATCAAAGAAAATGTTGTTGGCTTTA 57.270 26.923 0.00 0.00 0.00 1.85
3800 4118 1.071385 CTCTTCACTTGTCCACTGCCT 59.929 52.381 0.00 0.00 0.00 4.75
3803 4121 3.055819 TCTTCACTTGTCCACTGCCTATC 60.056 47.826 0.00 0.00 0.00 2.08
3804 4122 1.555075 TCACTTGTCCACTGCCTATCC 59.445 52.381 0.00 0.00 0.00 2.59
3805 4123 1.278985 CACTTGTCCACTGCCTATCCA 59.721 52.381 0.00 0.00 0.00 3.41
3806 4124 1.556911 ACTTGTCCACTGCCTATCCAG 59.443 52.381 0.00 0.00 38.78 3.86
3807 4125 0.253044 TTGTCCACTGCCTATCCAGC 59.747 55.000 0.00 0.00 36.29 4.85
3817 4162 2.444388 TGCCTATCCAGCCTTCATTCAT 59.556 45.455 0.00 0.00 0.00 2.57
3844 4189 3.760580 ATCATGATCGTCTTCCTTCCC 57.239 47.619 1.18 0.00 0.00 3.97
3896 4241 2.082231 CTCCACTGCTTCCATCACTTG 58.918 52.381 0.00 0.00 0.00 3.16
3926 4271 7.382898 AGCAGGTCTTGTTTTAAAACTTTTCA 58.617 30.769 26.76 8.12 39.59 2.69
4005 4350 6.259608 CCTATCTGAAATCCAAAGCACTACTG 59.740 42.308 0.00 0.00 0.00 2.74
4006 4351 4.326826 TCTGAAATCCAAAGCACTACTGG 58.673 43.478 0.00 0.00 0.00 4.00
4046 4391 3.573967 CAGTAAAAATCAGGGTTGGCACT 59.426 43.478 0.00 0.00 0.00 4.40
4049 4394 4.600692 AAAAATCAGGGTTGGCACTAAC 57.399 40.909 0.00 0.00 0.00 2.34
4155 4611 4.946157 ACAGATTCTTCGAGCAATGGAAAT 59.054 37.500 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.059260 TCATATGTCGATTCAATTCAATCATGT 57.941 29.630 2.85 0.00 32.99 3.21
11 12 9.326339 GTCATATGTCGATTCAATTCAATCATG 57.674 33.333 2.85 0.00 32.99 3.07
12 13 9.059260 TGTCATATGTCGATTCAATTCAATCAT 57.941 29.630 2.85 0.00 32.99 2.45
13 14 8.436046 TGTCATATGTCGATTCAATTCAATCA 57.564 30.769 2.85 0.00 32.99 2.57
14 15 9.720667 TTTGTCATATGTCGATTCAATTCAATC 57.279 29.630 1.90 0.00 0.00 2.67
15 16 9.726232 CTTTGTCATATGTCGATTCAATTCAAT 57.274 29.630 1.90 0.00 0.00 2.57
16 17 7.697710 GCTTTGTCATATGTCGATTCAATTCAA 59.302 33.333 1.90 0.00 0.00 2.69
17 18 7.148272 TGCTTTGTCATATGTCGATTCAATTCA 60.148 33.333 1.90 0.00 0.00 2.57
18 19 7.188834 TGCTTTGTCATATGTCGATTCAATTC 58.811 34.615 1.90 0.00 0.00 2.17
19 20 7.087409 TGCTTTGTCATATGTCGATTCAATT 57.913 32.000 1.90 0.00 0.00 2.32
20 21 6.682423 TGCTTTGTCATATGTCGATTCAAT 57.318 33.333 1.90 0.00 0.00 2.57
21 22 6.493449 TTGCTTTGTCATATGTCGATTCAA 57.507 33.333 1.90 2.41 0.00 2.69
22 23 5.447683 GCTTGCTTTGTCATATGTCGATTCA 60.448 40.000 1.90 0.00 0.00 2.57
23 24 4.966366 GCTTGCTTTGTCATATGTCGATTC 59.034 41.667 1.90 0.00 0.00 2.52
24 25 4.494690 CGCTTGCTTTGTCATATGTCGATT 60.495 41.667 1.90 0.00 0.00 3.34
25 26 3.001634 CGCTTGCTTTGTCATATGTCGAT 59.998 43.478 1.90 0.00 0.00 3.59
26 27 2.348362 CGCTTGCTTTGTCATATGTCGA 59.652 45.455 1.90 0.00 0.00 4.20
27 28 2.697363 CGCTTGCTTTGTCATATGTCG 58.303 47.619 1.90 0.00 0.00 4.35
28 29 2.444351 GCGCTTGCTTTGTCATATGTC 58.556 47.619 0.00 0.00 35.07 3.06
29 30 1.202065 CGCGCTTGCTTTGTCATATGT 60.202 47.619 5.56 0.00 36.08 2.29
30 31 1.062440 TCGCGCTTGCTTTGTCATATG 59.938 47.619 5.56 0.00 36.08 1.78
31 32 1.368641 TCGCGCTTGCTTTGTCATAT 58.631 45.000 5.56 0.00 36.08 1.78
32 33 1.152510 TTCGCGCTTGCTTTGTCATA 58.847 45.000 5.56 0.00 36.08 2.15
33 34 0.523072 ATTCGCGCTTGCTTTGTCAT 59.477 45.000 5.56 0.00 36.08 3.06
34 35 1.152510 TATTCGCGCTTGCTTTGTCA 58.847 45.000 5.56 0.00 36.08 3.58
35 36 2.241259 TTATTCGCGCTTGCTTTGTC 57.759 45.000 5.56 0.00 36.08 3.18
36 37 2.697431 TTTATTCGCGCTTGCTTTGT 57.303 40.000 5.56 0.00 36.08 2.83
37 38 3.170505 TCATTTATTCGCGCTTGCTTTG 58.829 40.909 5.56 0.00 36.08 2.77
38 39 3.485947 TCATTTATTCGCGCTTGCTTT 57.514 38.095 5.56 0.00 36.08 3.51
39 40 3.485947 TTCATTTATTCGCGCTTGCTT 57.514 38.095 5.56 0.00 36.08 3.91
40 41 3.429085 CTTTCATTTATTCGCGCTTGCT 58.571 40.909 5.56 0.00 36.08 3.91
41 42 2.531508 CCTTTCATTTATTCGCGCTTGC 59.468 45.455 5.56 0.00 0.00 4.01
42 43 4.014847 TCCTTTCATTTATTCGCGCTTG 57.985 40.909 5.56 0.00 0.00 4.01
43 44 3.689649 ACTCCTTTCATTTATTCGCGCTT 59.310 39.130 5.56 0.00 0.00 4.68
44 45 3.270877 ACTCCTTTCATTTATTCGCGCT 58.729 40.909 5.56 0.00 0.00 5.92
45 46 3.675467 ACTCCTTTCATTTATTCGCGC 57.325 42.857 0.00 0.00 0.00 6.86
46 47 6.525121 TGATACTCCTTTCATTTATTCGCG 57.475 37.500 0.00 0.00 0.00 5.87
47 48 6.853362 GCTTGATACTCCTTTCATTTATTCGC 59.147 38.462 0.00 0.00 0.00 4.70
48 49 7.065894 CGCTTGATACTCCTTTCATTTATTCG 58.934 38.462 0.00 0.00 0.00 3.34
49 50 7.852945 CACGCTTGATACTCCTTTCATTTATTC 59.147 37.037 0.00 0.00 0.00 1.75
50 51 7.552687 TCACGCTTGATACTCCTTTCATTTATT 59.447 33.333 0.00 0.00 0.00 1.40
51 52 7.047891 TCACGCTTGATACTCCTTTCATTTAT 58.952 34.615 0.00 0.00 0.00 1.40
52 53 6.403049 TCACGCTTGATACTCCTTTCATTTA 58.597 36.000 0.00 0.00 0.00 1.40
53 54 5.245531 TCACGCTTGATACTCCTTTCATTT 58.754 37.500 0.00 0.00 0.00 2.32
54 55 4.832248 TCACGCTTGATACTCCTTTCATT 58.168 39.130 0.00 0.00 0.00 2.57
55 56 4.471904 TCACGCTTGATACTCCTTTCAT 57.528 40.909 0.00 0.00 0.00 2.57
56 57 3.953712 TCACGCTTGATACTCCTTTCA 57.046 42.857 0.00 0.00 0.00 2.69
57 58 4.026475 CGAATCACGCTTGATACTCCTTTC 60.026 45.833 6.07 0.00 42.00 2.62
58 59 3.865745 CGAATCACGCTTGATACTCCTTT 59.134 43.478 6.07 0.00 42.00 3.11
59 60 3.130516 TCGAATCACGCTTGATACTCCTT 59.869 43.478 6.07 0.00 42.00 3.36
60 61 2.688446 TCGAATCACGCTTGATACTCCT 59.312 45.455 6.07 0.00 42.00 3.69
61 62 3.079960 TCGAATCACGCTTGATACTCC 57.920 47.619 6.07 0.00 42.00 3.85
62 63 5.643339 AAATCGAATCACGCTTGATACTC 57.357 39.130 6.07 0.69 42.00 2.59
63 64 7.277981 ACTTAAAATCGAATCACGCTTGATACT 59.722 33.333 6.07 0.00 42.00 2.12
64 65 7.370836 CACTTAAAATCGAATCACGCTTGATAC 59.629 37.037 6.07 0.00 42.00 2.24
65 66 7.398746 CACTTAAAATCGAATCACGCTTGATA 58.601 34.615 6.07 0.00 42.00 2.15
66 67 6.250819 CACTTAAAATCGAATCACGCTTGAT 58.749 36.000 0.00 0.00 44.98 2.57
67 68 5.617609 CACTTAAAATCGAATCACGCTTGA 58.382 37.500 0.00 0.00 42.26 3.02
68 69 4.260656 GCACTTAAAATCGAATCACGCTTG 59.739 41.667 0.00 0.00 42.26 4.01
69 70 4.403453 GCACTTAAAATCGAATCACGCTT 58.597 39.130 0.00 0.00 42.26 4.68
70 71 3.483574 CGCACTTAAAATCGAATCACGCT 60.484 43.478 0.00 0.00 42.26 5.07
71 72 2.770865 CGCACTTAAAATCGAATCACGC 59.229 45.455 0.00 0.00 42.26 5.34
72 73 4.239505 TCGCACTTAAAATCGAATCACG 57.760 40.909 0.00 0.00 44.09 4.35
73 74 5.854157 TCTTCGCACTTAAAATCGAATCAC 58.146 37.500 0.00 0.00 39.70 3.06
74 75 6.367695 TCTTCTTCGCACTTAAAATCGAATCA 59.632 34.615 0.00 0.00 39.70 2.57
75 76 6.762108 TCTTCTTCGCACTTAAAATCGAATC 58.238 36.000 0.00 0.00 39.70 2.52
76 77 6.721571 TCTTCTTCGCACTTAAAATCGAAT 57.278 33.333 0.00 0.00 39.70 3.34
77 78 6.533819 TTCTTCTTCGCACTTAAAATCGAA 57.466 33.333 0.00 0.00 38.42 3.71
78 79 6.533819 TTTCTTCTTCGCACTTAAAATCGA 57.466 33.333 0.00 0.00 0.00 3.59
79 80 7.603297 TTTTTCTTCTTCGCACTTAAAATCG 57.397 32.000 0.00 0.00 0.00 3.34
101 102 6.493166 TCACCATCCCTCTCACATTATTTTT 58.507 36.000 0.00 0.00 0.00 1.94
102 103 6.069440 TCTCACCATCCCTCTCACATTATTTT 60.069 38.462 0.00 0.00 0.00 1.82
103 104 5.429762 TCTCACCATCCCTCTCACATTATTT 59.570 40.000 0.00 0.00 0.00 1.40
104 105 4.971282 TCTCACCATCCCTCTCACATTATT 59.029 41.667 0.00 0.00 0.00 1.40
105 106 4.560739 TCTCACCATCCCTCTCACATTAT 58.439 43.478 0.00 0.00 0.00 1.28
106 107 3.963374 CTCTCACCATCCCTCTCACATTA 59.037 47.826 0.00 0.00 0.00 1.90
107 108 2.770802 CTCTCACCATCCCTCTCACATT 59.229 50.000 0.00 0.00 0.00 2.71
108 109 2.396608 CTCTCACCATCCCTCTCACAT 58.603 52.381 0.00 0.00 0.00 3.21
109 110 1.620798 CCTCTCACCATCCCTCTCACA 60.621 57.143 0.00 0.00 0.00 3.58
110 111 1.118838 CCTCTCACCATCCCTCTCAC 58.881 60.000 0.00 0.00 0.00 3.51
111 112 0.689080 GCCTCTCACCATCCCTCTCA 60.689 60.000 0.00 0.00 0.00 3.27
112 113 1.743321 CGCCTCTCACCATCCCTCTC 61.743 65.000 0.00 0.00 0.00 3.20
113 114 1.760086 CGCCTCTCACCATCCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
114 115 1.743321 CTCGCCTCTCACCATCCCTC 61.743 65.000 0.00 0.00 0.00 4.30
115 116 1.760086 CTCGCCTCTCACCATCCCT 60.760 63.158 0.00 0.00 0.00 4.20
116 117 1.118356 ATCTCGCCTCTCACCATCCC 61.118 60.000 0.00 0.00 0.00 3.85
117 118 0.033228 CATCTCGCCTCTCACCATCC 59.967 60.000 0.00 0.00 0.00 3.51
118 119 1.035923 TCATCTCGCCTCTCACCATC 58.964 55.000 0.00 0.00 0.00 3.51
119 120 1.489481 TTCATCTCGCCTCTCACCAT 58.511 50.000 0.00 0.00 0.00 3.55
120 121 1.266178 TTTCATCTCGCCTCTCACCA 58.734 50.000 0.00 0.00 0.00 4.17
121 122 2.386661 TTTTCATCTCGCCTCTCACC 57.613 50.000 0.00 0.00 0.00 4.02
122 123 5.220681 GGTTTATTTTCATCTCGCCTCTCAC 60.221 44.000 0.00 0.00 0.00 3.51
123 124 4.876107 GGTTTATTTTCATCTCGCCTCTCA 59.124 41.667 0.00 0.00 0.00 3.27
124 125 4.025647 CGGTTTATTTTCATCTCGCCTCTC 60.026 45.833 0.00 0.00 0.00 3.20
125 126 3.871594 CGGTTTATTTTCATCTCGCCTCT 59.128 43.478 0.00 0.00 0.00 3.69
126 127 3.869246 TCGGTTTATTTTCATCTCGCCTC 59.131 43.478 0.00 0.00 0.00 4.70
127 128 3.621715 GTCGGTTTATTTTCATCTCGCCT 59.378 43.478 0.00 0.00 0.00 5.52
128 129 3.543460 CGTCGGTTTATTTTCATCTCGCC 60.543 47.826 0.00 0.00 0.00 5.54
129 130 3.305094 TCGTCGGTTTATTTTCATCTCGC 59.695 43.478 0.00 0.00 0.00 5.03
130 131 5.444586 TTCGTCGGTTTATTTTCATCTCG 57.555 39.130 0.00 0.00 0.00 4.04
131 132 7.295930 AGTTTTCGTCGGTTTATTTTCATCTC 58.704 34.615 0.00 0.00 0.00 2.75
132 133 7.198306 AGTTTTCGTCGGTTTATTTTCATCT 57.802 32.000 0.00 0.00 0.00 2.90
133 134 8.834212 GTTAGTTTTCGTCGGTTTATTTTCATC 58.166 33.333 0.00 0.00 0.00 2.92
134 135 7.804600 GGTTAGTTTTCGTCGGTTTATTTTCAT 59.195 33.333 0.00 0.00 0.00 2.57
135 136 7.131565 GGTTAGTTTTCGTCGGTTTATTTTCA 58.868 34.615 0.00 0.00 0.00 2.69
136 137 7.131565 TGGTTAGTTTTCGTCGGTTTATTTTC 58.868 34.615 0.00 0.00 0.00 2.29
137 138 7.025485 TGGTTAGTTTTCGTCGGTTTATTTT 57.975 32.000 0.00 0.00 0.00 1.82
138 139 6.293571 CCTGGTTAGTTTTCGTCGGTTTATTT 60.294 38.462 0.00 0.00 0.00 1.40
139 140 5.179929 CCTGGTTAGTTTTCGTCGGTTTATT 59.820 40.000 0.00 0.00 0.00 1.40
140 141 4.692155 CCTGGTTAGTTTTCGTCGGTTTAT 59.308 41.667 0.00 0.00 0.00 1.40
141 142 4.057432 CCTGGTTAGTTTTCGTCGGTTTA 58.943 43.478 0.00 0.00 0.00 2.01
142 143 2.874086 CCTGGTTAGTTTTCGTCGGTTT 59.126 45.455 0.00 0.00 0.00 3.27
143 144 2.486918 CCTGGTTAGTTTTCGTCGGTT 58.513 47.619 0.00 0.00 0.00 4.44
144 145 1.875157 GCCTGGTTAGTTTTCGTCGGT 60.875 52.381 0.00 0.00 0.00 4.69
145 146 0.794473 GCCTGGTTAGTTTTCGTCGG 59.206 55.000 0.00 0.00 0.00 4.79
146 147 0.437295 CGCCTGGTTAGTTTTCGTCG 59.563 55.000 0.00 0.00 0.00 5.12
147 148 1.787012 TCGCCTGGTTAGTTTTCGTC 58.213 50.000 0.00 0.00 0.00 4.20
148 149 2.243602 TTCGCCTGGTTAGTTTTCGT 57.756 45.000 0.00 0.00 0.00 3.85
149 150 3.612472 TTTTCGCCTGGTTAGTTTTCG 57.388 42.857 0.00 0.00 0.00 3.46
169 170 8.470002 GTTGGTAGAATAGCCTTCATGATTTTT 58.530 33.333 0.00 0.00 38.57 1.94
170 171 7.836183 AGTTGGTAGAATAGCCTTCATGATTTT 59.164 33.333 0.00 0.00 38.57 1.82
171 172 7.284034 CAGTTGGTAGAATAGCCTTCATGATTT 59.716 37.037 0.00 0.00 38.57 2.17
172 173 6.769822 CAGTTGGTAGAATAGCCTTCATGATT 59.230 38.462 0.00 0.00 38.57 2.57
173 174 6.100279 TCAGTTGGTAGAATAGCCTTCATGAT 59.900 38.462 0.00 0.00 38.57 2.45
174 175 5.425217 TCAGTTGGTAGAATAGCCTTCATGA 59.575 40.000 0.00 0.00 38.57 3.07
175 176 5.674525 TCAGTTGGTAGAATAGCCTTCATG 58.325 41.667 0.00 0.00 38.57 3.07
176 177 5.663106 TCTCAGTTGGTAGAATAGCCTTCAT 59.337 40.000 0.06 0.00 38.57 2.57
177 178 5.023452 TCTCAGTTGGTAGAATAGCCTTCA 58.977 41.667 0.06 0.00 38.57 3.02
178 179 5.105310 TGTCTCAGTTGGTAGAATAGCCTTC 60.105 44.000 0.00 0.00 38.57 3.46
179 180 4.777896 TGTCTCAGTTGGTAGAATAGCCTT 59.222 41.667 0.00 0.00 38.57 4.35
180 181 4.353777 TGTCTCAGTTGGTAGAATAGCCT 58.646 43.478 0.00 0.00 38.57 4.58
181 182 4.737855 TGTCTCAGTTGGTAGAATAGCC 57.262 45.455 0.00 0.00 38.57 3.93
182 183 6.926272 CCTAATGTCTCAGTTGGTAGAATAGC 59.074 42.308 0.00 0.00 40.09 2.97
183 184 8.239038 TCCTAATGTCTCAGTTGGTAGAATAG 57.761 38.462 0.00 0.00 0.00 1.73
184 185 7.839705 ACTCCTAATGTCTCAGTTGGTAGAATA 59.160 37.037 0.00 0.00 0.00 1.75
185 186 6.670027 ACTCCTAATGTCTCAGTTGGTAGAAT 59.330 38.462 0.00 0.00 0.00 2.40
186 187 6.017192 ACTCCTAATGTCTCAGTTGGTAGAA 58.983 40.000 0.00 0.00 0.00 2.10
187 188 5.580998 ACTCCTAATGTCTCAGTTGGTAGA 58.419 41.667 0.00 0.00 0.00 2.59
188 189 5.923733 ACTCCTAATGTCTCAGTTGGTAG 57.076 43.478 0.00 0.00 0.00 3.18
189 190 6.728411 TCTACTCCTAATGTCTCAGTTGGTA 58.272 40.000 0.00 0.00 0.00 3.25
190 191 5.580998 TCTACTCCTAATGTCTCAGTTGGT 58.419 41.667 0.00 0.00 0.00 3.67
191 192 6.531503 TTCTACTCCTAATGTCTCAGTTGG 57.468 41.667 0.00 0.00 0.00 3.77
192 193 8.253810 TCATTTCTACTCCTAATGTCTCAGTTG 58.746 37.037 0.00 0.00 32.49 3.16
193 194 8.367660 TCATTTCTACTCCTAATGTCTCAGTT 57.632 34.615 0.00 0.00 32.49 3.16
194 195 7.836685 TCTCATTTCTACTCCTAATGTCTCAGT 59.163 37.037 0.00 0.00 32.49 3.41
195 196 8.231692 TCTCATTTCTACTCCTAATGTCTCAG 57.768 38.462 0.00 0.00 32.49 3.35
196 197 8.595362 TTCTCATTTCTACTCCTAATGTCTCA 57.405 34.615 0.00 0.00 32.49 3.27
342 352 8.503196 CCTTTGCTATTTTGGGTTTTTACAATC 58.497 33.333 0.00 0.00 0.00 2.67
343 353 8.214364 TCCTTTGCTATTTTGGGTTTTTACAAT 58.786 29.630 0.00 0.00 0.00 2.71
389 400 1.468914 GTTTTGGGCTAGAAGCTTCCG 59.531 52.381 22.81 15.01 41.99 4.30
425 436 4.487714 CTTTTATAGGAGGAGTGCCACA 57.512 45.455 0.00 0.00 36.29 4.17
433 445 8.776728 CTGAAGAGTCAGCCTTTTATAGGAGGA 61.777 44.444 7.46 0.00 46.59 3.71
449 462 2.755650 GGCGAAAGAACTGAAGAGTCA 58.244 47.619 0.00 0.00 0.00 3.41
497 510 5.631096 TGTTGTTGTTGTTGTTGTGTGTATG 59.369 36.000 0.00 0.00 0.00 2.39
499 512 5.183014 TGTTGTTGTTGTTGTTGTGTGTA 57.817 34.783 0.00 0.00 0.00 2.90
514 527 2.919859 TGAATTGCGTGTGTTGTTGTTG 59.080 40.909 0.00 0.00 0.00 3.33
515 528 3.223423 TGAATTGCGTGTGTTGTTGTT 57.777 38.095 0.00 0.00 0.00 2.83
516 529 2.929531 TGAATTGCGTGTGTTGTTGT 57.070 40.000 0.00 0.00 0.00 3.32
517 530 5.879948 TTTATGAATTGCGTGTGTTGTTG 57.120 34.783 0.00 0.00 0.00 3.33
519 532 4.742659 GGTTTTATGAATTGCGTGTGTTGT 59.257 37.500 0.00 0.00 0.00 3.32
611 625 1.439228 GTCTCTGCTATCAGGCGCA 59.561 57.895 10.83 0.00 40.69 6.09
617 631 4.245660 CAAAAGGTTCGTCTCTGCTATCA 58.754 43.478 0.00 0.00 0.00 2.15
620 634 2.224185 TGCAAAAGGTTCGTCTCTGCTA 60.224 45.455 0.00 0.00 0.00 3.49
630 644 4.602995 TGTTTGATACGTGCAAAAGGTTC 58.397 39.130 16.60 7.69 37.03 3.62
648 662 6.238538 CGTCACCACCTAATTAGTTGTTGTTT 60.239 38.462 11.50 0.00 0.00 2.83
663 677 2.897969 ACATCTAAGTTCGTCACCACCT 59.102 45.455 0.00 0.00 0.00 4.00
664 678 2.993899 CACATCTAAGTTCGTCACCACC 59.006 50.000 0.00 0.00 0.00 4.61
739 754 8.617290 AGAGACGGAAATAAATACAGTTTTGT 57.383 30.769 0.00 0.00 41.39 2.83
776 791 2.172679 GGAAGAGACGGAAAGACTCCT 58.827 52.381 0.00 0.00 42.85 3.69
777 792 1.205179 GGGAAGAGACGGAAAGACTCC 59.795 57.143 0.00 0.00 41.49 3.85
778 793 1.205179 GGGGAAGAGACGGAAAGACTC 59.795 57.143 0.00 0.00 41.00 3.36
781 796 2.025636 AAGGGGAAGAGACGGAAAGA 57.974 50.000 0.00 0.00 0.00 2.52
783 798 3.588210 AAAAAGGGGAAGAGACGGAAA 57.412 42.857 0.00 0.00 0.00 3.13
784 799 4.392047 GTTAAAAAGGGGAAGAGACGGAA 58.608 43.478 0.00 0.00 0.00 4.30
785 800 3.244665 GGTTAAAAAGGGGAAGAGACGGA 60.245 47.826 0.00 0.00 0.00 4.69
786 801 3.079578 GGTTAAAAAGGGGAAGAGACGG 58.920 50.000 0.00 0.00 0.00 4.79
788 803 6.474140 TTTTGGTTAAAAAGGGGAAGAGAC 57.526 37.500 0.00 0.00 32.72 3.36
799 814 5.450826 GGCCGTCTCTTCTTTTGGTTAAAAA 60.451 40.000 0.00 0.00 35.50 1.94
801 816 3.566742 GGCCGTCTCTTCTTTTGGTTAAA 59.433 43.478 0.00 0.00 0.00 1.52
802 817 3.143728 GGCCGTCTCTTCTTTTGGTTAA 58.856 45.455 0.00 0.00 0.00 2.01
803 818 2.551504 GGGCCGTCTCTTCTTTTGGTTA 60.552 50.000 0.00 0.00 0.00 2.85
822 841 2.281761 GTATGGCATGGGCTCGGG 60.282 66.667 10.98 0.00 40.87 5.14
861 892 1.627297 GGGCTCTTCGGGGAGATTGT 61.627 60.000 9.17 0.00 35.52 2.71
956 987 4.142227 CGAGGGGTATATATAGTGCGCTTT 60.142 45.833 9.73 0.00 0.00 3.51
1117 1151 1.202698 ACTCACGCCTTCTTCTTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
1160 1194 0.917259 CTAGATCACGACGCTGCAAC 59.083 55.000 0.00 0.00 0.00 4.17
1168 1202 5.250235 TGAAACAGATCCTAGATCACGAC 57.750 43.478 7.30 0.00 0.00 4.34
1190 1224 3.710677 CACATGAAGGAGGAAGAGGAGAT 59.289 47.826 0.00 0.00 0.00 2.75
1201 1235 0.656259 CGCATCAGCACATGAAGGAG 59.344 55.000 0.00 0.00 42.53 3.69
1203 1237 1.028330 ACCGCATCAGCACATGAAGG 61.028 55.000 0.00 4.30 42.53 3.46
1205 1239 1.199789 GAAACCGCATCAGCACATGAA 59.800 47.619 0.00 0.00 42.53 2.57
1233 1267 1.758783 GCTGCAAAACCACGAGAAAG 58.241 50.000 0.00 0.00 0.00 2.62
1345 1379 0.546598 AGCATACCTTGGTACCCTGC 59.453 55.000 10.07 13.17 33.29 4.85
1403 1437 3.010472 TGGGACACAAGACATCAATGGAT 59.990 43.478 0.00 0.00 0.00 3.41
1426 1460 5.123227 GCATACTACCAAACAGCTAATCCA 58.877 41.667 0.00 0.00 0.00 3.41
1440 1474 5.008811 CGTATATAGGAGCAGGCATACTACC 59.991 48.000 0.00 0.00 0.00 3.18
1446 1480 1.135139 CGCGTATATAGGAGCAGGCAT 59.865 52.381 6.62 0.00 0.00 4.40
1479 1513 4.102524 TCCGTTTCATGCCAATAGGACTAT 59.897 41.667 0.00 0.00 36.89 2.12
1505 1539 3.243401 ACGCAACCTTCAGAAAATGGTTC 60.243 43.478 2.89 0.00 40.39 3.62
1517 1551 0.375803 AACACGACAACGCAACCTTC 59.624 50.000 0.00 0.00 43.96 3.46
1526 1561 3.936902 TTCAGCACTTAACACGACAAC 57.063 42.857 0.00 0.00 0.00 3.32
1531 1566 1.398451 CGCCTTTCAGCACTTAACACG 60.398 52.381 0.00 0.00 0.00 4.49
1540 1575 1.001974 AGTGTATCACGCCTTTCAGCA 59.998 47.619 0.00 0.00 39.64 4.41
1547 1582 1.475403 AGTGCTAGTGTATCACGCCT 58.525 50.000 0.00 0.00 39.64 5.52
1549 1584 5.728255 CATTTTAGTGCTAGTGTATCACGC 58.272 41.667 0.00 0.00 39.64 5.34
1557 1592 4.031028 GCGATTGCATTTTAGTGCTAGTG 58.969 43.478 0.00 0.00 45.27 2.74
1558 1593 3.941483 AGCGATTGCATTTTAGTGCTAGT 59.059 39.130 7.90 0.00 45.27 2.57
1559 1594 4.542662 AGCGATTGCATTTTAGTGCTAG 57.457 40.909 7.90 0.00 45.27 3.42
1560 1595 6.618287 AATAGCGATTGCATTTTAGTGCTA 57.382 33.333 7.90 0.00 45.27 3.49
1561 1596 5.505173 AATAGCGATTGCATTTTAGTGCT 57.495 34.783 7.90 0.00 45.27 4.40
1562 1597 7.858052 AATAATAGCGATTGCATTTTAGTGC 57.142 32.000 7.90 0.00 46.23 4.40
1589 1630 9.532494 TCAGTAGGGTACACAAAGTATAGTTTA 57.468 33.333 5.23 0.00 34.67 2.01
1590 1631 8.426569 TCAGTAGGGTACACAAAGTATAGTTT 57.573 34.615 0.00 0.00 34.67 2.66
1591 1632 8.605325 ATCAGTAGGGTACACAAAGTATAGTT 57.395 34.615 0.00 0.00 34.67 2.24
1592 1633 9.705103 TTATCAGTAGGGTACACAAAGTATAGT 57.295 33.333 0.00 0.00 34.67 2.12
1631 1672 5.770663 TGAGACAAAATGGTAAATCCCGAAA 59.229 36.000 0.00 0.00 34.77 3.46
1644 1685 5.335426 CCAGAGACATTGGTGAGACAAAATG 60.335 44.000 0.00 0.00 36.35 2.32
1668 1712 2.028748 AGGGCTGATTCACAAATTGCAC 60.029 45.455 0.00 0.00 31.99 4.57
1671 1715 6.029346 ACTTAAGGGCTGATTCACAAATTG 57.971 37.500 7.53 0.00 0.00 2.32
1681 1725 5.450818 TGGTTTCATACTTAAGGGCTGAT 57.549 39.130 7.53 0.00 0.00 2.90
1682 1726 4.919774 TGGTTTCATACTTAAGGGCTGA 57.080 40.909 7.53 3.81 0.00 4.26
1683 1727 5.975693 TTTGGTTTCATACTTAAGGGCTG 57.024 39.130 7.53 1.40 0.00 4.85
1684 1728 6.252995 TGATTTGGTTTCATACTTAAGGGCT 58.747 36.000 7.53 0.00 0.00 5.19
1685 1729 6.524101 TGATTTGGTTTCATACTTAAGGGC 57.476 37.500 7.53 0.00 0.00 5.19
1686 1730 6.980397 GCATGATTTGGTTTCATACTTAAGGG 59.020 38.462 7.53 0.00 32.63 3.95
1687 1731 7.546358 TGCATGATTTGGTTTCATACTTAAGG 58.454 34.615 7.53 0.00 32.63 2.69
1688 1732 9.241317 GATGCATGATTTGGTTTCATACTTAAG 57.759 33.333 2.46 0.00 32.63 1.85
1689 1733 8.970020 AGATGCATGATTTGGTTTCATACTTAA 58.030 29.630 2.46 0.00 32.63 1.85
1690 1734 8.523915 AGATGCATGATTTGGTTTCATACTTA 57.476 30.769 2.46 0.00 32.63 2.24
1691 1735 7.414222 AGATGCATGATTTGGTTTCATACTT 57.586 32.000 2.46 0.00 32.63 2.24
1692 1736 7.093640 ACAAGATGCATGATTTGGTTTCATACT 60.094 33.333 2.46 0.00 32.63 2.12
1693 1737 7.037438 ACAAGATGCATGATTTGGTTTCATAC 58.963 34.615 2.46 0.00 32.63 2.39
1724 1768 7.095695 ACAACTACAAATAAACTGTGCAAGT 57.904 32.000 0.00 0.00 42.60 3.16
1762 1806 5.531287 AGACTGGGTGCTAGTTTAAAAACAG 59.469 40.000 8.21 4.97 41.30 3.16
1801 1845 5.266733 ACAACACTTGAATGCTTGATTGT 57.733 34.783 0.00 0.00 0.00 2.71
1802 1846 6.919662 ACTAACAACACTTGAATGCTTGATTG 59.080 34.615 0.00 0.00 0.00 2.67
1804 1848 6.639632 ACTAACAACACTTGAATGCTTGAT 57.360 33.333 0.00 0.00 0.00 2.57
1805 1849 6.765989 ACTACTAACAACACTTGAATGCTTGA 59.234 34.615 0.00 0.00 0.00 3.02
1806 1850 6.959361 ACTACTAACAACACTTGAATGCTTG 58.041 36.000 0.00 0.00 0.00 4.01
1807 1851 7.568199 AACTACTAACAACACTTGAATGCTT 57.432 32.000 0.00 0.00 0.00 3.91
1828 1872 4.150897 TCAGTTAGACCAAGCACAAACT 57.849 40.909 0.00 0.00 0.00 2.66
1836 1880 8.091449 ACAGTTAGAAGAATCAGTTAGACCAAG 58.909 37.037 0.00 0.00 0.00 3.61
1857 1901 4.690748 CACATTCGACATAGGAACACAGTT 59.309 41.667 0.00 0.00 0.00 3.16
1888 1932 8.721478 GCTTAGAAATAAAGATTCAGTGTGTCA 58.279 33.333 0.00 0.00 0.00 3.58
1890 1934 7.885399 AGGCTTAGAAATAAAGATTCAGTGTGT 59.115 33.333 0.00 0.00 0.00 3.72
1905 1949 9.034800 TGAATGTAAATGGAAAGGCTTAGAAAT 57.965 29.630 0.00 0.00 0.00 2.17
1909 1953 8.230472 AGATGAATGTAAATGGAAAGGCTTAG 57.770 34.615 0.00 0.00 0.00 2.18
1933 1977 9.528018 AACAACAAACATTAAACACATTCCTAG 57.472 29.630 0.00 0.00 0.00 3.02
1957 2001 7.412020 GCAGTCAGCTAATAGTCAACTTACAAC 60.412 40.741 0.00 0.00 41.15 3.32
1963 2007 4.021104 TGTGCAGTCAGCTAATAGTCAACT 60.021 41.667 0.00 0.00 45.94 3.16
1966 2010 4.743057 ATGTGCAGTCAGCTAATAGTCA 57.257 40.909 0.00 0.00 45.94 3.41
1967 2011 5.582269 TGAAATGTGCAGTCAGCTAATAGTC 59.418 40.000 0.00 0.00 45.94 2.59
1969 2013 6.615264 ATGAAATGTGCAGTCAGCTAATAG 57.385 37.500 0.00 0.00 45.94 1.73
2192 2243 2.039879 GGGAGAACAGGTTAGCAAAGGA 59.960 50.000 0.00 0.00 0.00 3.36
2193 2244 2.040412 AGGGAGAACAGGTTAGCAAAGG 59.960 50.000 0.00 0.00 0.00 3.11
2449 2500 7.496920 CAGCTCAATGATCACCAGAACTTAATA 59.503 37.037 0.00 0.00 0.00 0.98
2452 2503 5.046376 TCAGCTCAATGATCACCAGAACTTA 60.046 40.000 0.00 0.00 0.00 2.24
2454 2505 3.262660 TCAGCTCAATGATCACCAGAACT 59.737 43.478 0.00 0.00 0.00 3.01
2458 2509 3.945921 ACAATCAGCTCAATGATCACCAG 59.054 43.478 0.00 0.00 39.00 4.00
2487 2538 7.441836 TCTACAAGCAAGAAACACAGATAGAA 58.558 34.615 0.00 0.00 0.00 2.10
2629 2680 1.281925 TTCTGGAGGGGGAAGATGCC 61.282 60.000 0.00 0.00 0.00 4.40
2766 2818 5.796350 ACAACAATTAACGCTGTCTATCC 57.204 39.130 0.00 0.00 0.00 2.59
2771 2823 4.024387 TGGAGAACAACAATTAACGCTGTC 60.024 41.667 0.00 0.00 0.00 3.51
2772 2824 3.880490 TGGAGAACAACAATTAACGCTGT 59.120 39.130 0.00 0.00 0.00 4.40
2773 2825 4.024048 ACTGGAGAACAACAATTAACGCTG 60.024 41.667 0.00 0.00 0.00 5.18
2774 2826 4.134563 ACTGGAGAACAACAATTAACGCT 58.865 39.130 0.00 0.00 0.00 5.07
2775 2827 4.213482 AGACTGGAGAACAACAATTAACGC 59.787 41.667 0.00 0.00 0.00 4.84
2776 2828 5.924475 AGACTGGAGAACAACAATTAACG 57.076 39.130 0.00 0.00 0.00 3.18
2802 2856 5.702865 CAACATGGGTCACATTAGAACTTG 58.297 41.667 0.00 0.00 37.84 3.16
2913 2967 2.222727 AGCAGCAGCAACCTCCTCT 61.223 57.895 3.17 0.00 45.49 3.69
2940 2994 6.129053 AGCAGCAAAATAGCAACTTCTATC 57.871 37.500 0.00 0.00 36.85 2.08
2949 3003 7.219322 TCTAGATATGAAGCAGCAAAATAGCA 58.781 34.615 0.00 0.00 36.85 3.49
3066 3120 5.640357 ACGAACAAAATAAGATAGCGGAACA 59.360 36.000 0.00 0.00 0.00 3.18
3071 3125 7.672738 AGTAACACGAACAAAATAAGATAGCG 58.327 34.615 0.00 0.00 0.00 4.26
3146 3201 9.959749 GTTCTATTCAAACATAAAAACACAGGA 57.040 29.630 0.00 0.00 0.00 3.86
3175 3232 8.603242 TGAGATAAACTAACAAAACAGAGGAC 57.397 34.615 0.00 0.00 0.00 3.85
3177 3234 8.608844 ACTGAGATAAACTAACAAAACAGAGG 57.391 34.615 0.00 0.00 0.00 3.69
3216 3278 2.668001 GCAAACATCTTGTATGCACGCA 60.668 45.455 0.00 0.00 0.00 5.24
3244 3306 1.153005 GGAGGAGCTGGAGCCATTG 60.153 63.158 0.00 0.00 43.38 2.82
3258 3324 1.369321 GGCTATCTTGGCTCGGAGG 59.631 63.158 7.20 0.00 0.00 4.30
3263 3329 1.369321 CGGAGGGCTATCTTGGCTC 59.631 63.158 0.00 0.00 0.00 4.70
3329 3415 4.127171 TCTTCACTTTCTGTGCCACTAAC 58.873 43.478 0.00 0.00 45.81 2.34
3335 3421 1.135859 CGCATCTTCACTTTCTGTGCC 60.136 52.381 0.00 0.00 45.81 5.01
3351 3437 3.443681 ACGATCCATTTTCTTTTCCGCAT 59.556 39.130 0.00 0.00 0.00 4.73
3352 3438 2.817258 ACGATCCATTTTCTTTTCCGCA 59.183 40.909 0.00 0.00 0.00 5.69
3354 3440 5.933790 TGTTACGATCCATTTTCTTTTCCG 58.066 37.500 0.00 0.00 0.00 4.30
3355 3441 5.800438 GCTGTTACGATCCATTTTCTTTTCC 59.200 40.000 0.00 0.00 0.00 3.13
3356 3442 5.800438 GGCTGTTACGATCCATTTTCTTTTC 59.200 40.000 0.00 0.00 0.00 2.29
3358 3444 4.764823 TGGCTGTTACGATCCATTTTCTTT 59.235 37.500 0.00 0.00 0.00 2.52
3359 3445 4.331968 TGGCTGTTACGATCCATTTTCTT 58.668 39.130 0.00 0.00 0.00 2.52
3360 3446 3.950397 TGGCTGTTACGATCCATTTTCT 58.050 40.909 0.00 0.00 0.00 2.52
3361 3447 4.695217 TTGGCTGTTACGATCCATTTTC 57.305 40.909 0.00 0.00 0.00 2.29
3362 3448 5.659440 AATTGGCTGTTACGATCCATTTT 57.341 34.783 0.00 0.00 0.00 1.82
3363 3449 5.410067 CAAATTGGCTGTTACGATCCATTT 58.590 37.500 0.00 0.00 0.00 2.32
3364 3450 4.142182 CCAAATTGGCTGTTACGATCCATT 60.142 41.667 0.00 0.00 0.00 3.16
3414 3550 5.651172 TTGCGTATGTACATATTGCAGTC 57.349 39.130 29.00 13.42 38.14 3.51
3422 3558 9.549078 TTCTATCCATTTTTGCGTATGTACATA 57.451 29.630 11.62 11.62 0.00 2.29
3425 3561 9.730420 AATTTCTATCCATTTTTGCGTATGTAC 57.270 29.630 0.00 0.00 0.00 2.90
3426 3562 9.729023 CAATTTCTATCCATTTTTGCGTATGTA 57.271 29.630 0.00 0.00 0.00 2.29
3427 3563 8.465999 TCAATTTCTATCCATTTTTGCGTATGT 58.534 29.630 0.00 0.00 0.00 2.29
3428 3564 8.854979 TCAATTTCTATCCATTTTTGCGTATG 57.145 30.769 0.00 0.00 0.00 2.39
3429 3565 9.467258 CATCAATTTCTATCCATTTTTGCGTAT 57.533 29.630 0.00 0.00 0.00 3.06
3430 3566 8.465999 ACATCAATTTCTATCCATTTTTGCGTA 58.534 29.630 0.00 0.00 0.00 4.42
3431 3567 7.322664 ACATCAATTTCTATCCATTTTTGCGT 58.677 30.769 0.00 0.00 0.00 5.24
3432 3568 7.760131 ACATCAATTTCTATCCATTTTTGCG 57.240 32.000 0.00 0.00 0.00 4.85
3433 3569 8.758715 GCTACATCAATTTCTATCCATTTTTGC 58.241 33.333 0.00 0.00 0.00 3.68
3434 3570 8.961092 CGCTACATCAATTTCTATCCATTTTTG 58.039 33.333 0.00 0.00 0.00 2.44
3435 3571 8.902806 TCGCTACATCAATTTCTATCCATTTTT 58.097 29.630 0.00 0.00 0.00 1.94
3476 3651 4.332819 GGAACCCTTGTCACAATATCTTCG 59.667 45.833 0.00 0.00 0.00 3.79
3478 3653 5.255397 TGGAACCCTTGTCACAATATCTT 57.745 39.130 0.00 0.00 0.00 2.40
3480 3655 5.975693 TTTGGAACCCTTGTCACAATATC 57.024 39.130 0.00 0.00 0.00 1.63
3555 3769 8.992073 AGCCAACAACATTTTCTTTGATTTATC 58.008 29.630 0.00 0.00 0.00 1.75
3556 3770 8.907222 AGCCAACAACATTTTCTTTGATTTAT 57.093 26.923 0.00 0.00 0.00 1.40
3557 3771 8.729805 AAGCCAACAACATTTTCTTTGATTTA 57.270 26.923 0.00 0.00 0.00 1.40
3558 3772 7.628769 AAGCCAACAACATTTTCTTTGATTT 57.371 28.000 0.00 0.00 0.00 2.17
3559 3773 7.628769 AAAGCCAACAACATTTTCTTTGATT 57.371 28.000 0.00 0.00 0.00 2.57
3560 3774 8.203485 TCTAAAGCCAACAACATTTTCTTTGAT 58.797 29.630 0.00 0.00 0.00 2.57
3561 3775 7.551585 TCTAAAGCCAACAACATTTTCTTTGA 58.448 30.769 0.00 0.00 0.00 2.69
3562 3776 7.769272 TCTAAAGCCAACAACATTTTCTTTG 57.231 32.000 0.00 0.00 0.00 2.77
3594 3808 5.700832 CAGTAGTGCCACTTCATTGAAACTA 59.299 40.000 1.02 2.69 0.00 2.24
3800 4118 6.196918 AGATTGATGAATGAAGGCTGGATA 57.803 37.500 0.00 0.00 0.00 2.59
3803 4121 6.002082 TGATAGATTGATGAATGAAGGCTGG 58.998 40.000 0.00 0.00 0.00 4.85
3804 4122 7.390718 TCATGATAGATTGATGAATGAAGGCTG 59.609 37.037 0.00 0.00 0.00 4.85
3805 4123 7.459234 TCATGATAGATTGATGAATGAAGGCT 58.541 34.615 0.00 0.00 0.00 4.58
3806 4124 7.683437 TCATGATAGATTGATGAATGAAGGC 57.317 36.000 0.00 0.00 0.00 4.35
3807 4125 8.604890 CGATCATGATAGATTGATGAATGAAGG 58.395 37.037 8.54 0.00 32.84 3.46
3817 4162 6.907853 AGGAAGACGATCATGATAGATTGA 57.092 37.500 21.00 0.00 34.22 2.57
3844 4189 4.645535 TGGATCTGTTCAGTTGAGGAAAG 58.354 43.478 0.00 0.00 0.00 2.62
3896 4241 1.322442 AAAACAAGACCTGCTCTGCC 58.678 50.000 0.00 0.00 0.00 4.85
3897 4242 4.568152 TTTAAAACAAGACCTGCTCTGC 57.432 40.909 0.00 0.00 0.00 4.26
3926 4271 4.892934 TCATTGGTTTTCTGCACTTAACCT 59.107 37.500 16.01 0.15 40.50 3.50
4046 4391 1.302192 GTGCAACCGCCCTCTGTTA 60.302 57.895 0.00 0.00 37.32 2.41
4049 4394 3.052082 CAGTGCAACCGCCCTCTG 61.052 66.667 0.00 0.00 37.80 3.35
4067 4412 6.925610 TTACATCACTGCATCCATAAAGAC 57.074 37.500 0.00 0.00 0.00 3.01
4155 4611 6.798427 AAGAGATATGCTTGGTAGAGTGAA 57.202 37.500 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.