Multiple sequence alignment - TraesCS4A01G044600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G044600 chr4A 100.000 5505 0 0 1 5505 37037761 37032257 0.000000e+00 10166.0
1 TraesCS4A01G044600 chr4A 98.305 59 1 0 5020 5078 37032664 37032606 2.710000e-18 104.0
2 TraesCS4A01G044600 chr4A 98.305 59 1 0 5098 5156 37032742 37032684 2.710000e-18 104.0
3 TraesCS4A01G044600 chr4B 94.997 3038 104 25 2001 5024 536922491 536919488 0.000000e+00 4724.0
4 TraesCS4A01G044600 chr4B 94.135 2762 108 20 2244 5001 537156392 537153681 0.000000e+00 4154.0
5 TraesCS4A01G044600 chr4B 90.146 1096 57 24 857 1937 536923746 536922687 0.000000e+00 1378.0
6 TraesCS4A01G044600 chr4B 91.803 976 51 12 833 1799 537157848 537156893 0.000000e+00 1332.0
7 TraesCS4A01G044600 chr4B 85.876 793 74 22 1 779 536924522 536923754 0.000000e+00 809.0
8 TraesCS4A01G044600 chr4B 86.248 669 70 10 41 701 537158892 537158238 0.000000e+00 706.0
9 TraesCS4A01G044600 chr4B 95.632 435 10 3 5079 5505 536919489 536919056 0.000000e+00 689.0
10 TraesCS4A01G044600 chr4B 83.715 743 67 24 49 776 536926480 536925777 0.000000e+00 652.0
11 TraesCS4A01G044600 chr4B 93.939 99 6 0 2247 2345 537156489 537156391 3.440000e-32 150.0
12 TraesCS4A01G044600 chr4B 95.082 61 0 2 5020 5078 536919470 536919411 5.870000e-15 93.5
13 TraesCS4A01G044600 chr4D 94.821 3051 90 28 2062 5078 435654061 435651045 0.000000e+00 4697.0
14 TraesCS4A01G044600 chr4D 94.377 1067 34 15 885 1943 435655320 435654272 0.000000e+00 1615.0
15 TraesCS4A01G044600 chr4D 87.387 666 66 7 1 659 435656198 435655544 0.000000e+00 749.0
16 TraesCS4A01G044600 chr4D 95.804 429 15 1 5080 5505 435651121 435650693 0.000000e+00 689.0
17 TraesCS4A01G044600 chr4D 85.870 184 6 9 710 888 435655538 435655370 1.580000e-40 178.0
18 TraesCS4A01G044600 chr5A 83.492 842 124 14 3671 4504 544513019 544512185 0.000000e+00 771.0
19 TraesCS4A01G044600 chr5A 80.692 694 113 19 3743 4426 544459127 544458445 2.270000e-143 520.0
20 TraesCS4A01G044600 chr5D 83.393 843 125 14 3670 4504 428675806 428674971 0.000000e+00 767.0
21 TraesCS4A01G044600 chr2D 87.654 81 10 0 5374 5454 143757806 143757886 1.630000e-15 95.3
22 TraesCS4A01G044600 chr2B 87.654 81 10 0 5374 5454 201769353 201769433 1.630000e-15 95.3
23 TraesCS4A01G044600 chr2A 87.654 81 10 0 5374 5454 157547455 157547375 1.630000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G044600 chr4A 37032257 37037761 5504 True 10166.000000 10166 100.00000 1 5505 1 chr4A.!!$R1 5504
1 TraesCS4A01G044600 chr4B 537153681 537158892 5211 True 1585.500000 4154 91.53125 41 5001 4 chr4B.!!$R2 4960
2 TraesCS4A01G044600 chr4B 536919056 536926480 7424 True 1390.916667 4724 90.90800 1 5505 6 chr4B.!!$R1 5504
3 TraesCS4A01G044600 chr4D 435650693 435656198 5505 True 1585.600000 4697 91.65180 1 5505 5 chr4D.!!$R1 5504
4 TraesCS4A01G044600 chr5A 544512185 544513019 834 True 771.000000 771 83.49200 3671 4504 1 chr5A.!!$R2 833
5 TraesCS4A01G044600 chr5A 544458445 544459127 682 True 520.000000 520 80.69200 3743 4426 1 chr5A.!!$R1 683
6 TraesCS4A01G044600 chr5D 428674971 428675806 835 True 767.000000 767 83.39300 3670 4504 1 chr5D.!!$R1 834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 3318 0.040646 TTCTCCGCACTCTCCCCTTA 59.959 55.000 0.00 0.00 0.0 2.69 F
1979 4329 0.035915 GGAAGGACCTCAGCTGGTTC 60.036 60.000 15.13 3.24 41.0 3.62 F
2071 4571 0.108585 TCAGGTGCCAGAGGTGAAAC 59.891 55.000 0.00 0.00 0.0 2.78 F
2594 5199 1.627329 TGTGAGGAGCTGAAGATGCTT 59.373 47.619 0.00 0.00 41.3 3.91 F
3592 6217 2.959707 ACGGTTTAATGTTGCTTTGGGA 59.040 40.909 0.00 0.00 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 4553 0.179020 TGTTTCACCTCTGGCACCTG 60.179 55.000 0.0 0.0 0.00 4.00 R
3571 6196 2.959707 TCCCAAAGCAACATTAAACCGT 59.040 40.909 0.0 0.0 0.00 4.83 R
3994 6620 0.740737 CCAAATCGCCAATCCTGACC 59.259 55.000 0.0 0.0 0.00 4.02 R
4051 6677 1.342496 TGAGTCCTGTCTGCACTGAAG 59.658 52.381 0.0 0.0 0.00 3.02 R
5313 7974 0.179045 AGTGCAACAGAGAAGCCGTT 60.179 50.000 0.0 0.0 41.43 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 1998 0.625849 AGGATTGGCAGGATTTCCGT 59.374 50.000 0.00 0.00 42.08 4.69
89 2048 2.939103 GCAACATAGGCTCGAGATTTGT 59.061 45.455 18.75 11.98 0.00 2.83
119 2078 1.284408 GTGATAGCGAGAGAGCGGG 59.716 63.158 0.00 0.00 43.00 6.13
120 2079 1.152943 TGATAGCGAGAGAGCGGGT 60.153 57.895 0.00 0.00 43.00 5.28
121 2080 1.284408 GATAGCGAGAGAGCGGGTG 59.716 63.158 0.00 0.00 43.00 4.61
122 2081 2.136196 GATAGCGAGAGAGCGGGTGG 62.136 65.000 0.00 0.00 43.00 4.61
125 2084 3.522731 CGAGAGAGCGGGTGGGAG 61.523 72.222 0.00 0.00 0.00 4.30
126 2085 2.043852 GAGAGAGCGGGTGGGAGA 60.044 66.667 0.00 0.00 0.00 3.71
155 2114 1.224003 AGGAGGGCAAATGGGGTCAT 61.224 55.000 0.00 0.00 34.56 3.06
245 2211 2.260434 GCTCGTGGTTGGTAGCGA 59.740 61.111 0.00 0.00 0.00 4.93
279 2245 4.329545 GTCACCCGAGGCAGGCAA 62.330 66.667 0.00 0.00 0.00 4.52
287 2253 1.675641 GAGGCAGGCAACCGACAAT 60.676 57.895 0.00 0.00 37.17 2.71
302 2268 4.102404 CGACAATAATGACGGATCAACG 57.898 45.455 0.00 0.00 40.28 4.10
341 2307 7.201435 GCGTTTCCCTTATTTTTATCAGCAAAG 60.201 37.037 0.00 0.00 0.00 2.77
474 2440 9.967346 CTTCTTATCTACGGTTATCTTCATCAA 57.033 33.333 0.00 0.00 0.00 2.57
477 2443 4.357142 TCTACGGTTATCTTCATCAACGC 58.643 43.478 0.00 0.00 0.00 4.84
502 2468 0.602905 GCTGTTCTGGTACGCTGGTT 60.603 55.000 0.00 0.00 0.00 3.67
503 2469 1.878953 CTGTTCTGGTACGCTGGTTT 58.121 50.000 0.00 0.00 0.00 3.27
514 2480 3.180891 ACGCTGGTTTTATAGAGGCTC 57.819 47.619 6.34 6.34 0.00 4.70
574 2540 0.820226 CATGGCTTCGGTGAGAGAGA 59.180 55.000 0.00 0.00 0.00 3.10
600 2570 0.955428 GATGGTGCGTCTTTGGCTCA 60.955 55.000 0.00 0.00 0.00 4.26
601 2571 0.322816 ATGGTGCGTCTTTGGCTCAT 60.323 50.000 0.00 0.00 0.00 2.90
620 2590 4.377021 TCATTTCAGTGCTTGTAGTCGTT 58.623 39.130 0.00 0.00 0.00 3.85
660 2631 7.599998 GGACCTACACGTAATTTTTACTTCTGA 59.400 37.037 0.00 0.00 0.00 3.27
761 2733 9.874205 CAATGGCCATTTTCTTTCTTAAATAGA 57.126 29.630 28.68 0.00 0.00 1.98
766 2738 9.875691 GCCATTTTCTTTCTTAAATAGAATGGT 57.124 29.630 15.36 0.00 42.32 3.55
800 3041 8.494016 AATAAGCAGACTTATAAAAAGAGCGT 57.506 30.769 0.00 0.00 46.25 5.07
801 3042 6.410243 AAGCAGACTTATAAAAAGAGCGTC 57.590 37.500 0.00 0.00 33.13 5.19
831 3073 4.142513 GGTGAAGAGATGTTCTTTCATGGC 60.143 45.833 0.00 0.00 46.12 4.40
832 3074 4.456911 GTGAAGAGATGTTCTTTCATGGCA 59.543 41.667 0.00 0.00 46.12 4.92
833 3075 4.456911 TGAAGAGATGTTCTTTCATGGCAC 59.543 41.667 0.00 0.00 46.12 5.01
834 3076 4.025040 AGAGATGTTCTTTCATGGCACA 57.975 40.909 0.00 0.00 35.70 4.57
835 3077 4.597004 AGAGATGTTCTTTCATGGCACAT 58.403 39.130 0.00 0.00 36.17 3.21
836 3078 5.748402 AGAGATGTTCTTTCATGGCACATA 58.252 37.500 0.00 0.00 36.17 2.29
837 3079 6.363065 AGAGATGTTCTTTCATGGCACATAT 58.637 36.000 0.00 0.00 36.17 1.78
838 3080 7.512130 AGAGATGTTCTTTCATGGCACATATA 58.488 34.615 0.00 0.00 36.17 0.86
839 3081 7.443575 AGAGATGTTCTTTCATGGCACATATAC 59.556 37.037 0.00 0.00 36.17 1.47
862 3133 5.239525 ACAGAGTTGAGAAAATTTCCTTCCG 59.760 40.000 1.57 0.00 0.00 4.30
883 3154 5.544562 TCCGATTTTCCAAAATACCCCTTTT 59.455 36.000 0.00 0.00 38.64 2.27
884 3155 5.641636 CCGATTTTCCAAAATACCCCTTTTG 59.358 40.000 0.00 2.99 42.89 2.44
885 3156 6.227522 CGATTTTCCAAAATACCCCTTTTGT 58.772 36.000 8.09 0.00 42.10 2.83
886 3157 7.379750 CGATTTTCCAAAATACCCCTTTTGTA 58.620 34.615 8.09 0.00 42.10 2.41
887 3158 7.544217 CGATTTTCCAAAATACCCCTTTTGTAG 59.456 37.037 8.09 0.00 42.10 2.74
888 3159 5.731957 TTCCAAAATACCCCTTTTGTAGC 57.268 39.130 8.09 0.00 42.10 3.58
889 3160 5.005628 TCCAAAATACCCCTTTTGTAGCT 57.994 39.130 8.09 0.00 42.10 3.32
890 3161 4.770010 TCCAAAATACCCCTTTTGTAGCTG 59.230 41.667 0.00 0.00 42.10 4.24
891 3162 4.770010 CCAAAATACCCCTTTTGTAGCTGA 59.230 41.667 0.00 0.00 42.10 4.26
892 3163 5.245075 CCAAAATACCCCTTTTGTAGCTGAA 59.755 40.000 0.00 0.00 42.10 3.02
893 3164 6.239458 CCAAAATACCCCTTTTGTAGCTGAAA 60.239 38.462 0.00 0.00 42.10 2.69
894 3165 6.590234 AAATACCCCTTTTGTAGCTGAAAG 57.410 37.500 0.00 4.33 33.67 2.62
938 3265 2.031157 CCCACAAGTAAGGAACAAAGCG 60.031 50.000 0.00 0.00 0.00 4.68
991 3318 0.040646 TTCTCCGCACTCTCCCCTTA 59.959 55.000 0.00 0.00 0.00 2.69
1097 3426 1.817941 CCATCCAACGTAAGCCCCG 60.818 63.158 0.00 0.00 45.62 5.73
1171 3500 4.130118 AGATTTGTTCTGACTTGCTCGTT 58.870 39.130 0.00 0.00 31.79 3.85
1401 3730 2.624838 AGCAACCAGAGTTTTGTCATGG 59.375 45.455 0.00 0.00 32.45 3.66
1430 3759 3.388024 ACTTAGTCTTCCACTGCAGTTGA 59.612 43.478 18.94 17.41 36.43 3.18
1445 3774 4.823442 TGCAGTTGATTCCATGATGATACC 59.177 41.667 0.00 0.00 0.00 2.73
1460 3789 1.071385 GATACCCTCACTGCCTCCATG 59.929 57.143 0.00 0.00 0.00 3.66
1477 3806 0.171007 ATGTAGTTGTTGCCATGCGC 59.829 50.000 0.00 0.00 38.31 6.09
1525 3857 7.402071 TCTGGTGGTTATCCTATAAAAGTCAGT 59.598 37.037 0.00 0.00 34.23 3.41
1550 3882 6.690957 TGTTCAGTCTTAGTTTCATTTTTGCG 59.309 34.615 0.00 0.00 0.00 4.85
1898 4248 4.803426 CGTCACTGGCGAGGGCTC 62.803 72.222 0.00 0.00 39.81 4.70
1930 4280 3.986006 GGAGGTGTGGACGACGCA 61.986 66.667 3.50 0.00 36.74 5.24
1946 4296 4.688419 CAGCTTGCGGTGCCGTTG 62.688 66.667 12.46 4.25 42.09 4.10
1956 4306 4.254709 TGCCGTTGCAGCCAGAGT 62.255 61.111 0.00 0.00 44.23 3.24
1977 4327 3.813150 GGAAGGACCTCAGCTGGT 58.187 61.111 15.13 4.27 44.10 4.00
1978 4328 2.070639 GGAAGGACCTCAGCTGGTT 58.929 57.895 15.13 0.00 41.00 3.67
1979 4329 0.035915 GGAAGGACCTCAGCTGGTTC 60.036 60.000 15.13 3.24 41.00 3.62
1980 4330 0.390472 GAAGGACCTCAGCTGGTTCG 60.390 60.000 15.13 1.24 40.51 3.95
1981 4331 1.831652 AAGGACCTCAGCTGGTTCGG 61.832 60.000 15.13 11.78 40.51 4.30
1982 4332 2.584391 GGACCTCAGCTGGTTCGGT 61.584 63.158 15.13 14.89 41.00 4.69
1983 4333 1.371558 GACCTCAGCTGGTTCGGTT 59.628 57.895 15.13 1.30 41.00 4.44
1984 4334 0.250338 GACCTCAGCTGGTTCGGTTT 60.250 55.000 15.13 0.00 41.00 3.27
1985 4335 0.182775 ACCTCAGCTGGTTCGGTTTT 59.817 50.000 15.13 0.00 36.89 2.43
1986 4336 1.318576 CCTCAGCTGGTTCGGTTTTT 58.681 50.000 15.13 0.00 0.00 1.94
1987 4337 1.001378 CCTCAGCTGGTTCGGTTTTTG 60.001 52.381 15.13 0.00 0.00 2.44
1988 4338 1.676006 CTCAGCTGGTTCGGTTTTTGT 59.324 47.619 15.13 0.00 0.00 2.83
1989 4339 2.875933 CTCAGCTGGTTCGGTTTTTGTA 59.124 45.455 15.13 0.00 0.00 2.41
1990 4340 3.280295 TCAGCTGGTTCGGTTTTTGTAA 58.720 40.909 15.13 0.00 0.00 2.41
1991 4341 3.314080 TCAGCTGGTTCGGTTTTTGTAAG 59.686 43.478 15.13 0.00 0.00 2.34
1992 4342 2.621526 AGCTGGTTCGGTTTTTGTAAGG 59.378 45.455 0.00 0.00 0.00 2.69
1993 4343 2.287970 GCTGGTTCGGTTTTTGTAAGGG 60.288 50.000 0.00 0.00 0.00 3.95
1994 4344 2.295070 CTGGTTCGGTTTTTGTAAGGGG 59.705 50.000 0.00 0.00 0.00 4.79
1995 4345 1.614903 GGTTCGGTTTTTGTAAGGGGG 59.385 52.381 0.00 0.00 0.00 5.40
2021 4521 2.105993 GGGTCTAGTTGAGGGTTTGTGT 59.894 50.000 0.00 0.00 0.00 3.72
2038 4538 2.104792 TGTGTTGGAGGTGGAAGAAGAG 59.895 50.000 0.00 0.00 0.00 2.85
2043 4543 0.174617 GAGGTGGAAGAAGAGCGAGG 59.825 60.000 0.00 0.00 0.00 4.63
2044 4544 1.448717 GGTGGAAGAAGAGCGAGGC 60.449 63.158 0.00 0.00 0.00 4.70
2053 4553 0.741221 AAGAGCGAGGCGTTGGATTC 60.741 55.000 0.00 0.00 0.00 2.52
2068 4568 0.615331 GATTCAGGTGCCAGAGGTGA 59.385 55.000 0.00 0.00 0.00 4.02
2071 4571 0.108585 TCAGGTGCCAGAGGTGAAAC 59.891 55.000 0.00 0.00 0.00 2.78
2085 4585 2.297701 GTGAAACAAGAACCAGAGCCA 58.702 47.619 0.00 0.00 36.32 4.75
2096 4596 3.004752 ACCAGAGCCATTGGATTGTAC 57.995 47.619 6.95 0.00 39.08 2.90
2163 4668 7.117812 CGCTCCCTTTTATACGTGATTATCATT 59.882 37.037 0.00 0.00 0.00 2.57
2420 5024 6.489022 GGGAAATTTGTTACTGGAGTTGTAGT 59.511 38.462 0.00 0.00 0.00 2.73
2449 5053 6.015434 AGGGTGTATTTTTCCAAATCTGTGTC 60.015 38.462 0.00 0.00 34.29 3.67
2502 5107 3.690745 GCTGATTGCCACTTGCCT 58.309 55.556 0.00 0.00 40.16 4.75
2508 5113 2.298729 TGATTGCCACTTGCCTTTTACC 59.701 45.455 0.00 0.00 40.16 2.85
2594 5199 1.627329 TGTGAGGAGCTGAAGATGCTT 59.373 47.619 0.00 0.00 41.30 3.91
2601 5206 3.505293 GGAGCTGAAGATGCTTTTGAAGT 59.495 43.478 0.00 0.00 41.30 3.01
2871 5477 7.730084 TCCTCATTGATCAGAAGAAATACGAT 58.270 34.615 0.00 0.00 0.00 3.73
3178 5784 4.060900 TCCATCGCTCATATTTGCTTCTC 58.939 43.478 0.00 0.00 0.00 2.87
3283 5891 4.520111 TCTTGCTGATTGTGTTATGCTGTT 59.480 37.500 0.00 0.00 0.00 3.16
3467 6075 4.082665 TCATCTGCCTCTTCCAATCATC 57.917 45.455 0.00 0.00 0.00 2.92
3480 6088 7.058525 TCTTCCAATCATCATCTGCACTTTAT 58.941 34.615 0.00 0.00 0.00 1.40
3482 6090 7.034685 TCCAATCATCATCTGCACTTTATTG 57.965 36.000 0.00 0.00 0.00 1.90
3490 6098 9.608617 CATCATCTGCACTTTATTGATTGTATC 57.391 33.333 0.00 0.00 0.00 2.24
3573 6198 8.911247 AGCTATTCTTTTAAAAATGCCTTACG 57.089 30.769 1.66 0.00 0.00 3.18
3574 6199 7.973944 AGCTATTCTTTTAAAAATGCCTTACGG 59.026 33.333 1.66 0.00 0.00 4.02
3575 6200 7.758076 GCTATTCTTTTAAAAATGCCTTACGGT 59.242 33.333 1.66 0.00 0.00 4.83
3576 6201 9.634163 CTATTCTTTTAAAAATGCCTTACGGTT 57.366 29.630 1.66 0.00 0.00 4.44
3577 6202 8.896320 ATTCTTTTAAAAATGCCTTACGGTTT 57.104 26.923 1.66 0.00 0.00 3.27
3578 6203 9.984190 ATTCTTTTAAAAATGCCTTACGGTTTA 57.016 25.926 1.66 0.00 0.00 2.01
3579 6204 9.813446 TTCTTTTAAAAATGCCTTACGGTTTAA 57.187 25.926 1.66 0.00 0.00 1.52
3580 6205 9.984190 TCTTTTAAAAATGCCTTACGGTTTAAT 57.016 25.926 1.66 0.00 0.00 1.40
3582 6207 9.543783 TTTTAAAAATGCCTTACGGTTTAATGT 57.456 25.926 0.00 0.00 0.00 2.71
3583 6208 9.543783 TTTAAAAATGCCTTACGGTTTAATGTT 57.456 25.926 0.00 0.00 0.00 2.71
3592 6217 2.959707 ACGGTTTAATGTTGCTTTGGGA 59.040 40.909 0.00 0.00 0.00 4.37
3661 6286 5.173774 ACACTCAAGCAACTGTTAACATG 57.826 39.130 9.13 6.80 0.00 3.21
3994 6620 5.811399 TTTGAATTATTGGTGTCTAGGCG 57.189 39.130 0.00 0.00 0.00 5.52
4051 6677 1.689959 CAGACAAATTTGCGAGCACC 58.310 50.000 18.12 0.00 0.00 5.01
4150 6776 3.858877 GCATTTCATACTCGCGGATCTCT 60.859 47.826 6.13 0.00 0.00 3.10
4552 7197 7.269477 GATTTTAGATCCCTGAAATCACTGG 57.731 40.000 14.02 0.00 46.33 4.00
4651 7297 3.992260 TGGACCGTAAATGTGTTTTGG 57.008 42.857 0.00 0.00 0.00 3.28
4672 7318 6.448369 TGGGTTTATCTTTTCTCTTCCTCA 57.552 37.500 0.00 0.00 0.00 3.86
4812 7459 3.851051 TGCGATTATGCAGTGGTCA 57.149 47.368 0.00 0.00 40.62 4.02
4854 7501 7.068103 CCTGTAATTGGTGGCAAATCTAACATA 59.932 37.037 0.00 0.00 0.00 2.29
4912 7561 2.192624 GTGCAAATGACACGCAGTTTT 58.807 42.857 0.00 0.00 41.61 2.43
4942 7591 8.718102 TGTGTAAGCTAATGTAAATCCTTCTC 57.282 34.615 0.00 0.00 0.00 2.87
4988 7637 9.474249 CGTTTATTTAGCACTAAAAACTCTAGC 57.526 33.333 6.92 0.00 38.38 3.42
4989 7638 9.474249 GTTTATTTAGCACTAAAAACTCTAGCG 57.526 33.333 6.92 0.00 38.38 4.26
5008 7658 2.996621 GCGACTCAAATGTAGAAGCAGT 59.003 45.455 0.00 0.00 0.00 4.40
5020 7674 9.726438 AAATGTAGAAGCAGTATCAAGTTACTT 57.274 29.630 0.00 0.00 29.93 2.24
5022 7676 9.804758 ATGTAGAAGCAGTATCAAGTTACTTAC 57.195 33.333 0.00 0.00 29.93 2.34
5023 7677 8.799367 TGTAGAAGCAGTATCAAGTTACTTACA 58.201 33.333 0.00 0.00 29.93 2.41
5024 7678 9.074443 GTAGAAGCAGTATCAAGTTACTTACAC 57.926 37.037 0.00 0.00 29.93 2.90
5025 7679 7.667557 AGAAGCAGTATCAAGTTACTTACACA 58.332 34.615 0.00 0.00 29.93 3.72
5026 7680 8.148351 AGAAGCAGTATCAAGTTACTTACACAA 58.852 33.333 0.00 0.00 29.93 3.33
5027 7681 7.891183 AGCAGTATCAAGTTACTTACACAAG 57.109 36.000 0.00 0.00 37.81 3.16
5028 7682 6.369065 AGCAGTATCAAGTTACTTACACAAGC 59.631 38.462 0.00 5.15 34.94 4.01
5029 7683 6.369065 GCAGTATCAAGTTACTTACACAAGCT 59.631 38.462 0.00 0.00 34.94 3.74
5030 7684 7.622256 GCAGTATCAAGTTACTTACACAAGCTG 60.622 40.741 0.00 2.35 34.94 4.24
5031 7685 7.598869 CAGTATCAAGTTACTTACACAAGCTGA 59.401 37.037 0.00 0.00 34.94 4.26
5032 7686 8.148351 AGTATCAAGTTACTTACACAAGCTGAA 58.852 33.333 0.00 0.00 34.94 3.02
5033 7687 7.986085 ATCAAGTTACTTACACAAGCTGAAT 57.014 32.000 0.00 0.00 34.94 2.57
5034 7688 7.421530 TCAAGTTACTTACACAAGCTGAATC 57.578 36.000 0.00 0.00 34.94 2.52
5035 7689 7.217200 TCAAGTTACTTACACAAGCTGAATCT 58.783 34.615 0.00 0.00 34.94 2.40
5036 7690 8.364894 TCAAGTTACTTACACAAGCTGAATCTA 58.635 33.333 0.00 0.00 34.94 1.98
5037 7691 8.436200 CAAGTTACTTACACAAGCTGAATCTAC 58.564 37.037 0.00 0.00 34.94 2.59
5038 7692 7.667557 AGTTACTTACACAAGCTGAATCTACA 58.332 34.615 0.00 0.00 34.94 2.74
5039 7693 7.815068 AGTTACTTACACAAGCTGAATCTACAG 59.185 37.037 0.00 0.00 40.43 2.74
5054 7708 9.941325 CTGAATCTACAGCTCTGGAATTATTAT 57.059 33.333 1.66 0.00 34.19 1.28
5055 7709 9.716531 TGAATCTACAGCTCTGGAATTATTATG 57.283 33.333 1.66 0.00 34.19 1.90
5056 7710 9.935241 GAATCTACAGCTCTGGAATTATTATGA 57.065 33.333 1.66 0.00 34.19 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 1973 3.463048 AATCCTGCCAATCCTCAAGTT 57.537 42.857 0.00 0.00 0.00 2.66
63 2022 1.929836 CTCGAGCCTATGTTGCAACTC 59.070 52.381 28.61 16.13 0.00 3.01
104 2063 2.196925 CCACCCGCTCTCTCGCTAT 61.197 63.158 0.00 0.00 0.00 2.97
119 2078 1.843851 TCCTCTCTCTCTCTCTCCCAC 59.156 57.143 0.00 0.00 0.00 4.61
120 2079 2.126882 CTCCTCTCTCTCTCTCTCCCA 58.873 57.143 0.00 0.00 0.00 4.37
121 2080 1.421646 CCTCCTCTCTCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
122 2081 1.421646 CCCTCCTCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
123 2082 1.202818 GCCCTCCTCTCTCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
124 2083 0.846693 GCCCTCCTCTCTCTCTCTCT 59.153 60.000 0.00 0.00 0.00 3.10
125 2084 0.550914 TGCCCTCCTCTCTCTCTCTC 59.449 60.000 0.00 0.00 0.00 3.20
126 2085 1.006813 TTGCCCTCCTCTCTCTCTCT 58.993 55.000 0.00 0.00 0.00 3.10
155 2114 2.293788 TGATCCATCTTCTTCCCCCAGA 60.294 50.000 0.00 0.00 0.00 3.86
216 2182 0.609131 CCACGAGCCCACATTCCTTT 60.609 55.000 0.00 0.00 0.00 3.11
223 2189 2.107041 CTACCAACCACGAGCCCACA 62.107 60.000 0.00 0.00 0.00 4.17
245 2211 4.415150 CAGCCACAGTCCCCGCAT 62.415 66.667 0.00 0.00 0.00 4.73
287 2253 2.623535 CAACCCGTTGATCCGTCATTA 58.376 47.619 1.15 0.00 42.93 1.90
295 2261 1.743995 CCCGTCCAACCCGTTGATC 60.744 63.158 9.15 1.45 42.93 2.92
428 2394 1.485066 GGATCCAACCGGTAGACACAT 59.515 52.381 8.00 0.00 0.00 3.21
477 2443 1.069906 GCGTACCAGAACAGCAAACAG 60.070 52.381 0.00 0.00 0.00 3.16
502 2468 2.223502 CGTCGTGCTGAGCCTCTATAAA 60.224 50.000 0.23 0.00 0.00 1.40
503 2469 1.333931 CGTCGTGCTGAGCCTCTATAA 59.666 52.381 0.23 0.00 0.00 0.98
514 2480 2.805353 CGGGAAGTCGTCGTGCTG 60.805 66.667 0.00 0.00 0.00 4.41
574 2540 2.202932 GACGCACCATCATCGCCT 60.203 61.111 0.00 0.00 0.00 5.52
600 2570 3.058914 GCAACGACTACAAGCACTGAAAT 60.059 43.478 0.00 0.00 0.00 2.17
601 2571 2.286833 GCAACGACTACAAGCACTGAAA 59.713 45.455 0.00 0.00 0.00 2.69
640 2610 9.052759 AGAACATCAGAAGTAAAAATTACGTGT 57.947 29.630 0.00 0.00 0.00 4.49
641 2611 9.878599 AAGAACATCAGAAGTAAAAATTACGTG 57.121 29.630 0.00 0.00 0.00 4.49
643 2613 9.250986 CGAAGAACATCAGAAGTAAAAATTACG 57.749 33.333 0.00 0.00 0.00 3.18
660 2631 6.821031 ACTCTCAAGTAGTACGAAGAACAT 57.179 37.500 0.00 0.00 32.59 2.71
668 2639 6.524933 CAGTTCATCAACTCTCAAGTAGTACG 59.475 42.308 0.00 0.00 41.24 3.67
734 2706 9.874205 CTATTTAAGAAAGAAAATGGCCATTGA 57.126 29.630 31.28 0.65 0.00 2.57
735 2707 9.874205 TCTATTTAAGAAAGAAAATGGCCATTG 57.126 29.630 31.28 12.69 0.00 2.82
761 2733 7.806180 AGTCTGCTTATTATACAAGGACCATT 58.194 34.615 0.00 0.00 0.00 3.16
800 3041 8.924511 AAAGAACATCTCTTCACCAAAATAGA 57.075 30.769 0.00 0.00 44.00 1.98
801 3042 8.786898 TGAAAGAACATCTCTTCACCAAAATAG 58.213 33.333 0.00 0.00 44.00 1.73
831 3073 9.994432 GGAAATTTTCTCAACTCTGTATATGTG 57.006 33.333 8.93 0.00 0.00 3.21
832 3074 9.965902 AGGAAATTTTCTCAACTCTGTATATGT 57.034 29.630 8.93 0.00 0.00 2.29
835 3077 9.449719 GGAAGGAAATTTTCTCAACTCTGTATA 57.550 33.333 0.00 0.00 0.00 1.47
836 3078 7.119846 CGGAAGGAAATTTTCTCAACTCTGTAT 59.880 37.037 0.00 0.00 0.00 2.29
837 3079 6.426937 CGGAAGGAAATTTTCTCAACTCTGTA 59.573 38.462 0.00 0.00 0.00 2.74
838 3080 5.239525 CGGAAGGAAATTTTCTCAACTCTGT 59.760 40.000 0.00 0.00 0.00 3.41
839 3081 5.470098 TCGGAAGGAAATTTTCTCAACTCTG 59.530 40.000 0.00 0.00 0.00 3.35
883 3154 3.141398 CACTTTCAGGCTTTCAGCTACA 58.859 45.455 0.00 0.00 41.99 2.74
884 3155 3.058639 CACACTTTCAGGCTTTCAGCTAC 60.059 47.826 0.00 0.00 41.99 3.58
885 3156 3.141398 CACACTTTCAGGCTTTCAGCTA 58.859 45.455 0.00 0.00 41.99 3.32
886 3157 1.952296 CACACTTTCAGGCTTTCAGCT 59.048 47.619 0.00 0.00 41.99 4.24
887 3158 1.949525 TCACACTTTCAGGCTTTCAGC 59.050 47.619 0.00 0.00 41.46 4.26
888 3159 2.291741 GGTCACACTTTCAGGCTTTCAG 59.708 50.000 0.00 0.00 0.00 3.02
889 3160 2.092429 AGGTCACACTTTCAGGCTTTCA 60.092 45.455 0.00 0.00 0.00 2.69
890 3161 2.576615 AGGTCACACTTTCAGGCTTTC 58.423 47.619 0.00 0.00 0.00 2.62
891 3162 2.736670 AGGTCACACTTTCAGGCTTT 57.263 45.000 0.00 0.00 0.00 3.51
892 3163 2.173569 AGAAGGTCACACTTTCAGGCTT 59.826 45.455 1.87 0.00 36.75 4.35
893 3164 1.771255 AGAAGGTCACACTTTCAGGCT 59.229 47.619 1.87 0.00 36.75 4.58
894 3165 2.262423 AGAAGGTCACACTTTCAGGC 57.738 50.000 1.87 0.00 36.75 4.85
895 3166 4.515567 GGTTAAGAAGGTCACACTTTCAGG 59.484 45.833 1.87 0.00 36.75 3.86
938 3265 2.436824 GGTGCGGAGGAGCCTTTC 60.437 66.667 0.00 0.00 41.57 2.62
1066 3393 4.506255 GATGGTGGAAGGGGCCGG 62.506 72.222 0.00 0.00 0.00 6.13
1067 3394 4.506255 GGATGGTGGAAGGGGCCG 62.506 72.222 0.00 0.00 0.00 6.13
1068 3395 2.929964 TTGGATGGTGGAAGGGGCC 61.930 63.158 0.00 0.00 0.00 5.80
1069 3396 1.682344 GTTGGATGGTGGAAGGGGC 60.682 63.158 0.00 0.00 0.00 5.80
1070 3397 1.378514 CGTTGGATGGTGGAAGGGG 60.379 63.158 0.00 0.00 0.00 4.79
1074 3401 1.612199 GGCTTACGTTGGATGGTGGAA 60.612 52.381 0.00 0.00 0.00 3.53
1097 3426 3.669230 GGTTTGGGGGAGGGGGAC 61.669 72.222 0.00 0.00 0.00 4.46
1401 3730 0.606604 TGGAAGACTAAGTCGTGGGC 59.393 55.000 0.00 0.00 37.67 5.36
1430 3759 4.506271 GCAGTGAGGGTATCATCATGGAAT 60.506 45.833 0.00 0.00 40.92 3.01
1445 3774 1.198713 ACTACATGGAGGCAGTGAGG 58.801 55.000 10.42 0.00 0.00 3.86
1477 3806 6.800408 CAGAGCTAACATGAAACTGTGAATTG 59.200 38.462 0.00 0.00 0.00 2.32
1525 3857 6.690957 CGCAAAAATGAAACTAAGACTGAACA 59.309 34.615 0.00 0.00 0.00 3.18
1570 3902 2.289274 TGAACAGTACACAAACCATGCG 59.711 45.455 0.00 0.00 0.00 4.73
1943 4293 1.673665 CCTCCACTCTGGCTGCAAC 60.674 63.158 0.50 0.00 37.47 4.17
1944 4294 1.418097 TTCCTCCACTCTGGCTGCAA 61.418 55.000 0.50 0.00 37.47 4.08
1945 4295 1.834856 CTTCCTCCACTCTGGCTGCA 61.835 60.000 0.50 0.00 37.47 4.41
1946 4296 1.078567 CTTCCTCCACTCTGGCTGC 60.079 63.158 0.00 0.00 37.47 5.25
1947 4297 0.906756 TCCTTCCTCCACTCTGGCTG 60.907 60.000 0.00 0.00 37.47 4.85
1948 4298 0.907230 GTCCTTCCTCCACTCTGGCT 60.907 60.000 0.00 0.00 37.47 4.75
1949 4299 1.599576 GTCCTTCCTCCACTCTGGC 59.400 63.158 0.00 0.00 37.47 4.85
1950 4300 0.252467 AGGTCCTTCCTCCACTCTGG 60.252 60.000 0.00 0.00 44.42 3.86
1951 4301 3.390280 AGGTCCTTCCTCCACTCTG 57.610 57.895 0.00 0.00 44.42 3.35
1971 4321 2.621526 CCTTACAAAAACCGAACCAGCT 59.378 45.455 0.00 0.00 0.00 4.24
1972 4322 2.287970 CCCTTACAAAAACCGAACCAGC 60.288 50.000 0.00 0.00 0.00 4.85
1973 4323 2.295070 CCCCTTACAAAAACCGAACCAG 59.705 50.000 0.00 0.00 0.00 4.00
1974 4324 2.308690 CCCCTTACAAAAACCGAACCA 58.691 47.619 0.00 0.00 0.00 3.67
1975 4325 1.614903 CCCCCTTACAAAAACCGAACC 59.385 52.381 0.00 0.00 0.00 3.62
1993 4343 3.793888 CAACTAGACCCCCGCCCC 61.794 72.222 0.00 0.00 0.00 5.80
1994 4344 2.686106 TCAACTAGACCCCCGCCC 60.686 66.667 0.00 0.00 0.00 6.13
1995 4345 2.732619 CCTCAACTAGACCCCCGCC 61.733 68.421 0.00 0.00 0.00 6.13
1996 4346 2.732619 CCCTCAACTAGACCCCCGC 61.733 68.421 0.00 0.00 0.00 6.13
1997 4347 0.908180 AACCCTCAACTAGACCCCCG 60.908 60.000 0.00 0.00 0.00 5.73
1998 4348 1.004394 CAAACCCTCAACTAGACCCCC 59.996 57.143 0.00 0.00 0.00 5.40
1999 4349 1.703513 ACAAACCCTCAACTAGACCCC 59.296 52.381 0.00 0.00 0.00 4.95
2021 4521 0.321671 CGCTCTTCTTCCACCTCCAA 59.678 55.000 0.00 0.00 0.00 3.53
2038 4538 2.464459 CCTGAATCCAACGCCTCGC 61.464 63.158 0.00 0.00 0.00 5.03
2043 4543 1.926511 CTGGCACCTGAATCCAACGC 61.927 60.000 0.00 0.00 0.00 4.84
2044 4544 0.321564 TCTGGCACCTGAATCCAACG 60.322 55.000 0.00 0.00 0.00 4.10
2053 4553 0.179020 TGTTTCACCTCTGGCACCTG 60.179 55.000 0.00 0.00 0.00 4.00
2068 4568 2.629617 CCAATGGCTCTGGTTCTTGTTT 59.370 45.455 0.00 0.00 0.00 2.83
2071 4571 2.205022 TCCAATGGCTCTGGTTCTTG 57.795 50.000 0.00 0.00 35.30 3.02
2085 4585 6.947733 TCTCAGTCCATTTTGTACAATCCAAT 59.052 34.615 9.56 3.65 0.00 3.16
2120 4622 1.084370 GCGCCTATGTGTCAGGTGTC 61.084 60.000 0.00 0.00 44.12 3.67
2121 4623 1.079127 GCGCCTATGTGTCAGGTGT 60.079 57.895 0.00 0.00 44.12 4.16
2290 4894 7.149307 TGACGTGACTAGAATTTAATCACACA 58.851 34.615 0.00 0.00 39.72 3.72
2310 4914 3.773860 TGACACAAGCAAAAATGACGT 57.226 38.095 0.00 0.00 0.00 4.34
2420 5024 8.387813 ACAGATTTGGAAAAATACACCCTACTA 58.612 33.333 0.00 0.00 0.00 1.82
2449 5053 9.784531 AGTTTAATGGGTATCATCATAACAGAG 57.215 33.333 0.00 0.00 34.44 3.35
2492 5097 1.616159 TCTGGTAAAAGGCAAGTGGC 58.384 50.000 0.00 0.00 43.74 5.01
2527 5132 5.376625 TGTAACAAGCTTCCTGACATTCTT 58.623 37.500 0.00 0.00 0.00 2.52
2594 5199 5.617252 AGTCTAAATTGACCGGACTTCAAA 58.383 37.500 9.46 0.00 36.57 2.69
2601 5206 3.596214 GCAGAAGTCTAAATTGACCGGA 58.404 45.455 9.46 0.00 37.66 5.14
2694 5300 6.422333 TGCATACCAGGATTAATGAGTTTCA 58.578 36.000 0.00 0.00 0.00 2.69
2889 5495 6.986424 CATATGCTGCACAAAACATATCAG 57.014 37.500 3.57 0.00 34.33 2.90
3178 5784 5.422214 AACCCAAGGAGATTACTGTACAG 57.578 43.478 21.44 21.44 0.00 2.74
3467 6075 9.394477 CATGATACAATCAATAAAGTGCAGATG 57.606 33.333 0.00 0.00 43.50 2.90
3480 6088 6.979465 TGCAACTGAAACATGATACAATCAA 58.021 32.000 0.00 0.00 43.50 2.57
3482 6090 9.013490 GTAATGCAACTGAAACATGATACAATC 57.987 33.333 0.00 0.00 0.00 2.67
3490 6098 4.869215 TGGTGTAATGCAACTGAAACATG 58.131 39.130 0.00 0.00 35.37 3.21
3568 6193 4.920927 CCCAAAGCAACATTAAACCGTAAG 59.079 41.667 0.00 0.00 0.00 2.34
3569 6194 4.583489 TCCCAAAGCAACATTAAACCGTAA 59.417 37.500 0.00 0.00 0.00 3.18
3570 6195 4.142790 TCCCAAAGCAACATTAAACCGTA 58.857 39.130 0.00 0.00 0.00 4.02
3571 6196 2.959707 TCCCAAAGCAACATTAAACCGT 59.040 40.909 0.00 0.00 0.00 4.83
3572 6197 3.651803 TCCCAAAGCAACATTAAACCG 57.348 42.857 0.00 0.00 0.00 4.44
3573 6198 5.146010 TCATCCCAAAGCAACATTAAACC 57.854 39.130 0.00 0.00 0.00 3.27
3574 6199 6.873076 TCAATCATCCCAAAGCAACATTAAAC 59.127 34.615 0.00 0.00 0.00 2.01
3575 6200 7.002250 TCAATCATCCCAAAGCAACATTAAA 57.998 32.000 0.00 0.00 0.00 1.52
3576 6201 6.602410 TCAATCATCCCAAAGCAACATTAA 57.398 33.333 0.00 0.00 0.00 1.40
3577 6202 6.154877 ACATCAATCATCCCAAAGCAACATTA 59.845 34.615 0.00 0.00 0.00 1.90
3578 6203 5.046159 ACATCAATCATCCCAAAGCAACATT 60.046 36.000 0.00 0.00 0.00 2.71
3579 6204 4.468510 ACATCAATCATCCCAAAGCAACAT 59.531 37.500 0.00 0.00 0.00 2.71
3580 6205 3.833650 ACATCAATCATCCCAAAGCAACA 59.166 39.130 0.00 0.00 0.00 3.33
3581 6206 4.178540 CACATCAATCATCCCAAAGCAAC 58.821 43.478 0.00 0.00 0.00 4.17
3582 6207 3.833650 ACACATCAATCATCCCAAAGCAA 59.166 39.130 0.00 0.00 0.00 3.91
3583 6208 3.193903 CACACATCAATCATCCCAAAGCA 59.806 43.478 0.00 0.00 0.00 3.91
3592 6217 6.056236 CAGGAAGATCTCACACATCAATCAT 58.944 40.000 0.00 0.00 0.00 2.45
3661 6286 5.163824 GGTACCGGCAGAACTGTATTAAAAC 60.164 44.000 0.00 0.00 0.00 2.43
3786 6411 7.205297 CCCATTTATTGCACTGAATCCTAAAG 58.795 38.462 0.00 0.00 0.00 1.85
3994 6620 0.740737 CCAAATCGCCAATCCTGACC 59.259 55.000 0.00 0.00 0.00 4.02
4051 6677 1.342496 TGAGTCCTGTCTGCACTGAAG 59.658 52.381 0.00 0.00 0.00 3.02
4090 6716 1.463056 GTTCGAATGACATTGTGGCGA 59.537 47.619 5.14 5.53 0.00 5.54
4150 6776 3.310774 GCTTCTTCGCAATATCAGCAAGA 59.689 43.478 1.67 6.12 31.87 3.02
4616 7262 1.667724 GGTCCAATGAAGTGCTGATCG 59.332 52.381 0.00 0.00 0.00 3.69
4651 7297 7.042335 TCGATGAGGAAGAGAAAAGATAAACC 58.958 38.462 0.00 0.00 0.00 3.27
4778 7425 1.667722 GCAAAGAAACAGGGCAGGG 59.332 57.895 0.00 0.00 0.00 4.45
4812 7459 5.899631 TTACAGGAGAAAGGTGGTAACTT 57.100 39.130 0.00 0.00 37.61 2.66
4854 7501 4.227300 TGGCACCAAGTATTAAGATCCACT 59.773 41.667 0.00 0.00 0.00 4.00
4868 7515 2.260844 TTCTCTTGAGTGGCACCAAG 57.739 50.000 28.26 28.26 40.68 3.61
4912 7561 8.486210 AGGATTTACATTAGCTTACACATCAGA 58.514 33.333 0.00 0.00 0.00 3.27
4963 7612 9.474249 CGCTAGAGTTTTTAGTGCTAAATAAAC 57.526 33.333 5.37 7.78 35.27 2.01
4964 7613 9.426837 TCGCTAGAGTTTTTAGTGCTAAATAAA 57.573 29.630 5.37 0.00 35.27 1.40
4965 7614 8.866956 GTCGCTAGAGTTTTTAGTGCTAAATAA 58.133 33.333 5.37 1.84 35.27 1.40
4966 7615 8.248945 AGTCGCTAGAGTTTTTAGTGCTAAATA 58.751 33.333 5.37 0.00 35.27 1.40
4988 7637 6.036470 TGATACTGCTTCTACATTTGAGTCG 58.964 40.000 0.00 0.00 0.00 4.18
4989 7638 7.547370 ACTTGATACTGCTTCTACATTTGAGTC 59.453 37.037 0.00 0.00 0.00 3.36
5008 7658 9.151471 GATTCAGCTTGTGTAAGTAACTTGATA 57.849 33.333 0.00 0.00 36.27 2.15
5028 7682 9.941325 ATAATAATTCCAGAGCTGTAGATTCAG 57.059 33.333 0.00 0.00 38.35 3.02
5029 7683 9.716531 CATAATAATTCCAGAGCTGTAGATTCA 57.283 33.333 0.00 0.00 0.00 2.57
5030 7684 9.935241 TCATAATAATTCCAGAGCTGTAGATTC 57.065 33.333 0.00 0.00 0.00 2.52
5150 7805 7.461182 TTGCTAATGGTGTTATGCTTAGTTT 57.539 32.000 0.00 0.00 0.00 2.66
5216 7871 2.411904 GCTGGCTCATACATACTCTGC 58.588 52.381 0.00 0.00 0.00 4.26
5313 7974 0.179045 AGTGCAACAGAGAAGCCGTT 60.179 50.000 0.00 0.00 41.43 4.44
5329 7990 3.039405 GCTGATAACATCGACTCGAGTG 58.961 50.000 25.58 15.21 39.91 3.51
5459 8120 2.507944 CTCCAGCCCAGGGAATCG 59.492 66.667 10.89 0.00 33.11 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.