Multiple sequence alignment - TraesCS4A01G044500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G044500 chr4A 100.000 3209 0 0 1 3209 37030298 37033506 0.000000e+00 5927.0
1 TraesCS4A01G044500 chr4A 98.305 59 1 0 2387 2445 37032606 37032664 1.570000e-18 104.0
2 TraesCS4A01G044500 chr4A 98.305 59 1 0 2309 2367 37032684 37032742 1.570000e-18 104.0
3 TraesCS4A01G044500 chr4B 92.409 2424 117 23 1 2386 536917095 536919489 0.000000e+00 3395.0
4 TraesCS4A01G044500 chr4B 94.652 748 29 6 2464 3209 537153681 537154419 0.000000e+00 1149.0
5 TraesCS4A01G044500 chr4B 92.426 779 35 14 2441 3209 536919488 536920252 0.000000e+00 1090.0
6 TraesCS4A01G044500 chr4B 95.082 61 0 2 2387 2445 536919411 536919470 3.410000e-15 93.5
7 TraesCS4A01G044500 chr4D 95.243 2060 79 11 337 2385 435649070 435651121 0.000000e+00 3243.0
8 TraesCS4A01G044500 chr4D 90.247 851 27 20 2387 3209 435651045 435651867 0.000000e+00 1061.0
9 TraesCS4A01G044500 chr4D 87.464 343 16 13 1 331 435648640 435648967 1.410000e-98 370.0
10 TraesCS4A01G044500 chr2D 87.654 81 10 0 2011 2091 143757886 143757806 9.480000e-16 95.3
11 TraesCS4A01G044500 chr2B 87.654 81 10 0 2011 2091 201769433 201769353 9.480000e-16 95.3
12 TraesCS4A01G044500 chr2A 87.654 81 10 0 2011 2091 157547375 157547455 9.480000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G044500 chr4A 37030298 37033506 3208 False 2045.000000 5927 98.870000 1 3209 3 chr4A.!!$F1 3208
1 TraesCS4A01G044500 chr4B 536917095 536920252 3157 False 1526.166667 3395 93.305667 1 3209 3 chr4B.!!$F2 3208
2 TraesCS4A01G044500 chr4B 537153681 537154419 738 False 1149.000000 1149 94.652000 2464 3209 1 chr4B.!!$F1 745
3 TraesCS4A01G044500 chr4D 435648640 435651867 3227 False 1558.000000 3243 90.984667 1 3209 3 chr4D.!!$F1 3208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 558 0.238289 CTGCCGCTTTTCGTGTGATT 59.762 50.0 0.0 0.0 36.19 2.57 F
1503 1648 0.175760 TGTCTTATGTCGGCAGCTCC 59.824 55.0 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 1970 0.809241 GGCTCAGAGACCGATTGCAG 60.809 60.0 0.0 0.0 0.0 4.41 R
2971 3150 0.765903 ACATGGCCGAGGAGGATGAT 60.766 55.0 0.0 0.0 45.0 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.864789 AGGTAATTAGCACCATCCCTG 57.135 47.619 16.53 0.00 38.62 4.45
81 83 4.272991 CCTGTTAGCTCATGATGCTTCTTC 59.727 45.833 20.02 11.37 41.46 2.87
87 110 3.248125 GCTCATGATGCTTCTTCAGTAGC 59.752 47.826 0.00 0.00 38.67 3.58
93 116 3.238108 TGCTTCTTCAGTAGCAGTAGC 57.762 47.619 4.15 0.00 42.25 3.58
109 132 4.213906 GCAGTAGCAGTAGTAGTAGTAGGC 59.786 50.000 0.00 1.89 41.58 3.93
114 137 2.877168 CAGTAGTAGTAGTAGGCCACCG 59.123 54.545 5.01 0.00 0.00 4.94
159 183 2.554032 CCAAACCTCCATGTCTTGTGTC 59.446 50.000 0.00 0.00 0.00 3.67
163 187 3.239449 ACCTCCATGTCTTGTGTCAGTA 58.761 45.455 0.00 0.00 0.00 2.74
165 189 3.259374 CCTCCATGTCTTGTGTCAGTAGT 59.741 47.826 0.00 0.00 0.00 2.73
167 191 4.883083 TCCATGTCTTGTGTCAGTAGTTC 58.117 43.478 0.00 0.00 0.00 3.01
168 192 4.588951 TCCATGTCTTGTGTCAGTAGTTCT 59.411 41.667 0.00 0.00 0.00 3.01
169 193 4.687948 CCATGTCTTGTGTCAGTAGTTCTG 59.312 45.833 0.00 0.00 44.85 3.02
170 194 5.292765 CATGTCTTGTGTCAGTAGTTCTGT 58.707 41.667 0.00 0.00 43.97 3.41
171 195 4.933330 TGTCTTGTGTCAGTAGTTCTGTC 58.067 43.478 0.00 0.00 43.97 3.51
289 326 1.432270 GGTGCTAAGATGTCGGCTGC 61.432 60.000 0.00 0.00 0.00 5.25
312 349 2.472816 CTTTGCCGAAATTGCTTGTGT 58.527 42.857 0.00 0.00 0.00 3.72
313 350 1.850377 TTGCCGAAATTGCTTGTGTG 58.150 45.000 0.00 0.00 0.00 3.82
320 357 1.515081 AATTGCTTGTGTGGCATTGC 58.485 45.000 0.00 0.00 39.54 3.56
326 363 2.733227 GCTTGTGTGGCATTGCTGTATC 60.733 50.000 8.82 0.00 0.00 2.24
331 368 3.879295 GTGTGGCATTGCTGTATCTGTAT 59.121 43.478 8.82 0.00 0.00 2.29
333 370 2.880268 TGGCATTGCTGTATCTGTATGC 59.120 45.455 8.82 0.00 0.00 3.14
373 507 5.706833 TCTCAACATTTGTAGCATGTGATGT 59.293 36.000 0.00 0.00 34.97 3.06
381 515 9.016623 CATTTGTAGCATGTGATGTTTAATCTG 57.983 33.333 0.00 0.00 0.00 2.90
382 516 7.686438 TTGTAGCATGTGATGTTTAATCTGT 57.314 32.000 0.00 0.00 0.00 3.41
383 517 7.307493 TGTAGCATGTGATGTTTAATCTGTC 57.693 36.000 0.00 0.00 0.00 3.51
384 518 7.105588 TGTAGCATGTGATGTTTAATCTGTCT 58.894 34.615 0.00 0.00 0.00 3.41
391 525 5.180117 GTGATGTTTAATCTGTCTGTGCACT 59.820 40.000 19.41 0.00 0.00 4.40
397 531 0.318441 TCTGTCTGTGCACTACTGCC 59.682 55.000 19.41 0.74 43.51 4.85
424 558 0.238289 CTGCCGCTTTTCGTGTGATT 59.762 50.000 0.00 0.00 36.19 2.57
436 570 1.910819 CGTGTGATTTTTGCGGTATGC 59.089 47.619 0.00 0.00 46.70 3.14
450 584 1.192534 GGTATGCGCTGCGTAAATCTC 59.807 52.381 24.04 5.25 31.52 2.75
486 621 1.866601 GTGAAGCACCAAATTTGTGCC 59.133 47.619 27.32 19.23 44.38 5.01
503 644 1.221414 GCCGGCTGTGCTTAATAGAG 58.779 55.000 22.15 0.00 0.00 2.43
511 652 4.808364 GCTGTGCTTAATAGAGAGGTGAAG 59.192 45.833 0.00 0.00 0.00 3.02
521 662 7.688918 AATAGAGAGGTGAAGGAGATCAAAT 57.311 36.000 0.00 0.00 0.00 2.32
536 677 2.066262 TCAAATCGCGGACTGAACTTC 58.934 47.619 6.13 0.00 0.00 3.01
602 743 4.990526 TCTTGCTTTCAGAGAAAATCCCT 58.009 39.130 0.00 0.00 0.00 4.20
660 801 2.874701 CGGCAGTTGGAGATATCTTTGG 59.125 50.000 6.70 0.00 0.00 3.28
742 883 9.177608 TCAGGGTTCATTTCTATCTTTGTATTG 57.822 33.333 0.00 0.00 0.00 1.90
753 894 8.225603 TCTATCTTTGTATTGATCCTTTTGGC 57.774 34.615 0.00 0.00 40.12 4.52
921 1062 2.796593 GCAATTTGCTGTCTTGGTTCAC 59.203 45.455 14.11 0.00 40.96 3.18
990 1135 3.317711 TGTGTGTTAATTGCAGTCTTGGG 59.682 43.478 0.00 0.00 0.00 4.12
1070 1215 5.641709 TGCTATTACTCAAAGACTCGACAG 58.358 41.667 0.00 0.00 0.00 3.51
1245 1390 1.044790 CCAAGGTGATCAATGGGGGC 61.045 60.000 13.23 0.00 0.00 5.80
1458 1603 1.979155 CTCCGACCTGCTCCACTCA 60.979 63.158 0.00 0.00 0.00 3.41
1483 1628 1.152756 GGGTTTGTGCACCTGTCCT 60.153 57.895 15.69 0.00 36.97 3.85
1497 1642 2.271800 CTGTCCTTGTCTTATGTCGGC 58.728 52.381 0.00 0.00 0.00 5.54
1503 1648 0.175760 TGTCTTATGTCGGCAGCTCC 59.824 55.000 0.00 0.00 0.00 4.70
1590 1735 3.618351 CAGCTTGGATCCTTGTGAGATT 58.382 45.455 14.23 0.00 0.00 2.40
1595 1740 5.392811 GCTTGGATCCTTGTGAGATTGAAAG 60.393 44.000 14.23 4.37 0.00 2.62
1691 1836 0.761187 AGTGCAGTGAAGGCTGAGAA 59.239 50.000 0.00 0.00 38.70 2.87
1743 1888 1.352083 CTGGTCCTGAGGTCTCCAAA 58.648 55.000 0.00 0.00 0.00 3.28
1748 1893 3.244911 GGTCCTGAGGTCTCCAAAATCAA 60.245 47.826 0.00 0.00 0.00 2.57
1797 1942 1.442857 GAGCTGTGTCTCGACCACG 60.443 63.158 0.00 0.00 41.26 4.94
1818 1963 3.024356 TCCTCCCCGGAGCTCTCT 61.024 66.667 14.64 0.00 40.69 3.10
1819 1964 2.837291 CCTCCCCGGAGCTCTCTG 60.837 72.222 14.64 3.93 40.69 3.35
1826 1971 3.768922 GGAGCTCTCTGGCACGCT 61.769 66.667 14.64 0.00 35.03 5.07
1908 2053 1.599576 GGAGAAGAGCCAGGGTGTC 59.400 63.158 0.00 0.00 0.00 3.67
2004 2149 2.507944 CTCCAGCCCAGGGAATCG 59.492 66.667 10.89 0.00 33.11 3.34
2134 2279 3.039405 GCTGATAACATCGACTCGAGTG 58.961 50.000 25.58 15.21 39.91 3.51
2150 2295 0.179045 AGTGCAACAGAGAAGCCGTT 60.179 50.000 0.00 0.00 41.43 4.44
2247 2398 2.411904 GCTGGCTCATACATACTCTGC 58.588 52.381 0.00 0.00 0.00 4.26
2313 2464 7.461182 TTGCTAATGGTGTTATGCTTAGTTT 57.539 32.000 0.00 0.00 0.00 2.66
2433 2585 9.935241 TCATAATAATTCCAGAGCTGTAGATTC 57.065 33.333 0.00 0.00 0.00 2.52
2434 2586 9.716531 CATAATAATTCCAGAGCTGTAGATTCA 57.283 33.333 0.00 0.00 0.00 2.57
2435 2587 9.941325 ATAATAATTCCAGAGCTGTAGATTCAG 57.059 33.333 0.00 0.00 38.35 3.02
2455 2607 9.151471 GATTCAGCTTGTGTAAGTAACTTGATA 57.849 33.333 0.00 0.00 36.27 2.15
2474 2630 7.547370 ACTTGATACTGCTTCTACATTTGAGTC 59.453 37.037 0.00 0.00 0.00 3.36
2497 2654 8.248945 AGTCGCTAGAGTTTTTAGTGCTAAATA 58.751 33.333 5.37 0.00 35.27 1.40
2498 2655 8.866956 GTCGCTAGAGTTTTTAGTGCTAAATAA 58.133 33.333 5.37 1.84 35.27 1.40
2499 2656 9.426837 TCGCTAGAGTTTTTAGTGCTAAATAAA 57.573 29.630 5.37 0.00 35.27 1.40
2500 2657 9.474249 CGCTAGAGTTTTTAGTGCTAAATAAAC 57.526 33.333 5.37 7.78 35.27 2.01
2551 2708 8.486210 AGGATTTACATTAGCTTACACATCAGA 58.514 33.333 0.00 0.00 0.00 3.27
2595 2754 2.260844 TTCTCTTGAGTGGCACCAAG 57.739 50.000 28.26 28.26 40.68 3.61
2609 2768 4.227300 TGGCACCAAGTATTAAGATCCACT 59.773 41.667 0.00 0.00 0.00 4.00
2651 2810 5.899631 TTACAGGAGAAAGGTGGTAACTT 57.100 39.130 0.00 0.00 37.61 2.66
2685 2844 1.667722 GCAAAGAAACAGGGCAGGG 59.332 57.895 0.00 0.00 0.00 4.45
2812 2973 7.042335 TCGATGAGGAAGAGAAAAGATAAACC 58.958 38.462 0.00 0.00 0.00 3.27
2847 3008 1.667724 GGTCCAATGAAGTGCTGATCG 59.332 52.381 0.00 0.00 0.00 3.69
2971 3150 9.883142 AAAAACAGACCAACTTAAAAATCATCA 57.117 25.926 0.00 0.00 0.00 3.07
3055 3234 0.459934 CAGCGCTCTCCTTCTCCTTG 60.460 60.000 7.13 0.00 0.00 3.61
3118 3297 3.404513 ATGCATGTTGAGGCAGAAAGCA 61.405 45.455 0.00 0.00 43.30 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.461339 TTAGACCGGAAATCGCAGGC 60.461 55.000 9.46 0.00 37.59 4.85
81 83 6.050432 ACTACTACTACTGCTACTGCTACTG 58.950 44.000 0.00 0.00 40.48 2.74
87 110 4.756135 GGCCTACTACTACTACTGCTACTG 59.244 50.000 0.00 0.00 0.00 2.74
93 116 2.877168 CGGTGGCCTACTACTACTACTG 59.123 54.545 3.32 0.00 0.00 2.74
125 149 1.973812 GTTTGGCAGGCTGACCTCC 60.974 63.158 19.69 10.01 46.34 4.30
163 187 4.646945 TCAAGAACAGACAGAGACAGAACT 59.353 41.667 0.00 0.00 0.00 3.01
165 189 5.798125 ATCAAGAACAGACAGAGACAGAA 57.202 39.130 0.00 0.00 0.00 3.02
167 191 5.178996 CCAAATCAAGAACAGACAGAGACAG 59.821 44.000 0.00 0.00 0.00 3.51
168 192 5.059161 CCAAATCAAGAACAGACAGAGACA 58.941 41.667 0.00 0.00 0.00 3.41
169 193 4.453819 CCCAAATCAAGAACAGACAGAGAC 59.546 45.833 0.00 0.00 0.00 3.36
170 194 4.645535 CCCAAATCAAGAACAGACAGAGA 58.354 43.478 0.00 0.00 0.00 3.10
171 195 3.190118 GCCCAAATCAAGAACAGACAGAG 59.810 47.826 0.00 0.00 0.00 3.35
234 265 2.275418 CAATAACCCAGCCCGGCT 59.725 61.111 5.94 5.94 40.77 5.52
235 266 2.833121 CCAATAACCCAGCCCGGC 60.833 66.667 0.00 0.00 0.00 6.13
236 267 1.752694 CACCAATAACCCAGCCCGG 60.753 63.158 0.00 0.00 0.00 5.73
237 268 2.414785 GCACCAATAACCCAGCCCG 61.415 63.158 0.00 0.00 0.00 6.13
289 326 2.288395 ACAAGCAATTTCGGCAAAGGAG 60.288 45.455 0.00 0.00 0.00 3.69
312 349 2.880268 GCATACAGATACAGCAATGCCA 59.120 45.455 0.00 0.00 34.95 4.92
313 350 3.549299 GCATACAGATACAGCAATGCC 57.451 47.619 0.00 0.00 34.95 4.40
331 368 0.815213 GATTCAGGCGCATACTGGCA 60.815 55.000 10.83 0.00 36.62 4.92
333 370 1.202568 TGAGATTCAGGCGCATACTGG 60.203 52.381 10.83 0.00 36.62 4.00
391 525 1.671054 GGCAGCAAGAACGGCAGTA 60.671 57.895 0.00 0.00 31.84 2.74
436 570 0.719465 AAACGGAGATTTACGCAGCG 59.281 50.000 14.82 14.82 0.00 5.18
444 578 2.478894 CACAGCGTGTAAACGGAGATTT 59.521 45.455 7.71 0.00 0.00 2.17
450 584 0.876777 TCACCACAGCGTGTAAACGG 60.877 55.000 7.71 0.00 35.18 4.44
486 621 2.101582 ACCTCTCTATTAAGCACAGCCG 59.898 50.000 0.00 0.00 0.00 5.52
503 644 2.869192 GCGATTTGATCTCCTTCACCTC 59.131 50.000 0.00 0.00 0.00 3.85
511 652 1.202417 TCAGTCCGCGATTTGATCTCC 60.202 52.381 8.23 0.00 0.00 3.71
521 662 3.036577 ACGAAGTTCAGTCCGCGA 58.963 55.556 8.23 0.00 37.78 5.87
536 677 5.455525 GGAACACAAATTCAGACTTGAAACG 59.544 40.000 0.00 0.00 45.82 3.60
602 743 0.318120 GTGGTCCGAGGAAACCGTTA 59.682 55.000 0.00 0.00 38.45 3.18
660 801 1.943340 CTATCCGAAGAGCTTTTGGCC 59.057 52.381 0.00 0.00 43.05 5.36
742 883 4.806640 TCAAATTCAGGCCAAAAGGATC 57.193 40.909 5.01 0.00 0.00 3.36
753 894 3.760684 AGGCAAGCTACTTCAAATTCAGG 59.239 43.478 0.00 0.00 0.00 3.86
990 1135 3.278574 TGTTGCTGCCATTGTAGGTATC 58.721 45.455 0.00 0.00 0.00 2.24
1070 1215 1.226831 GCTGTCTCGGTAGCAGAGC 60.227 63.158 8.34 0.00 39.67 4.09
1095 1240 2.103263 CAGGTAGCCTATGGACTTGTCC 59.897 54.545 12.54 12.54 29.64 4.02
1245 1390 4.636435 AACACCGGGTTCTGGCCG 62.636 66.667 6.32 0.00 33.35 6.13
1483 1628 1.405526 GGAGCTGCCGACATAAGACAA 60.406 52.381 0.00 0.00 0.00 3.18
1497 1642 1.070445 GATGACATCCGGGGAGCTG 59.930 63.158 0.00 0.00 0.00 4.24
1503 1648 1.201181 GAGATCTCGATGACATCCGGG 59.799 57.143 7.04 5.48 0.00 5.73
1558 1703 1.216064 TCCAAGCTGCCATATCCACT 58.784 50.000 0.00 0.00 0.00 4.00
1564 1709 1.565759 ACAAGGATCCAAGCTGCCATA 59.434 47.619 15.82 0.00 0.00 2.74
1590 1735 2.305927 GTCTGGGAACTCCATCCTTTCA 59.694 50.000 0.00 0.00 46.01 2.69
1595 1740 1.909302 TCAAGTCTGGGAACTCCATCC 59.091 52.381 0.00 0.00 46.01 3.51
1691 1836 1.881973 CATGCTGTGGTAACTTGCAGT 59.118 47.619 0.00 0.00 38.88 4.40
1819 1964 4.166011 GACCGATTGCAGCGTGCC 62.166 66.667 9.67 0.00 44.23 5.01
1820 1965 3.088500 GAGACCGATTGCAGCGTGC 62.089 63.158 9.67 3.44 45.29 5.34
1823 1968 1.144565 CTCAGAGACCGATTGCAGCG 61.145 60.000 4.29 4.29 0.00 5.18
1825 1970 0.809241 GGCTCAGAGACCGATTGCAG 60.809 60.000 0.00 0.00 0.00 4.41
1826 1971 1.219124 GGCTCAGAGACCGATTGCA 59.781 57.895 0.00 0.00 0.00 4.08
1908 2053 2.279517 GCCTCGCCATCCGTAGTG 60.280 66.667 0.00 0.00 38.35 2.74
2407 2559 9.935241 GAATCTACAGCTCTGGAATTATTATGA 57.065 33.333 1.66 0.00 34.19 2.15
2408 2560 9.716531 TGAATCTACAGCTCTGGAATTATTATG 57.283 33.333 1.66 0.00 34.19 1.90
2409 2561 9.941325 CTGAATCTACAGCTCTGGAATTATTAT 57.059 33.333 1.66 0.00 34.19 1.28
2424 2576 7.815068 AGTTACTTACACAAGCTGAATCTACAG 59.185 37.037 0.00 0.00 40.43 2.74
2425 2577 7.667557 AGTTACTTACACAAGCTGAATCTACA 58.332 34.615 0.00 0.00 34.94 2.74
2426 2578 8.436200 CAAGTTACTTACACAAGCTGAATCTAC 58.564 37.037 0.00 0.00 34.94 2.59
2427 2579 8.364894 TCAAGTTACTTACACAAGCTGAATCTA 58.635 33.333 0.00 0.00 34.94 1.98
2428 2580 7.217200 TCAAGTTACTTACACAAGCTGAATCT 58.783 34.615 0.00 0.00 34.94 2.40
2429 2581 7.421530 TCAAGTTACTTACACAAGCTGAATC 57.578 36.000 0.00 0.00 34.94 2.52
2430 2582 7.986085 ATCAAGTTACTTACACAAGCTGAAT 57.014 32.000 0.00 0.00 34.94 2.57
2431 2583 8.148351 AGTATCAAGTTACTTACACAAGCTGAA 58.852 33.333 0.00 0.00 34.94 3.02
2432 2584 7.598869 CAGTATCAAGTTACTTACACAAGCTGA 59.401 37.037 0.00 0.00 34.94 4.26
2433 2585 7.622256 GCAGTATCAAGTTACTTACACAAGCTG 60.622 40.741 0.00 2.35 34.94 4.24
2434 2586 6.369065 GCAGTATCAAGTTACTTACACAAGCT 59.631 38.462 0.00 0.00 34.94 3.74
2435 2587 6.369065 AGCAGTATCAAGTTACTTACACAAGC 59.631 38.462 0.00 5.15 34.94 4.01
2436 2588 7.891183 AGCAGTATCAAGTTACTTACACAAG 57.109 36.000 0.00 0.00 37.81 3.16
2437 2589 8.148351 AGAAGCAGTATCAAGTTACTTACACAA 58.852 33.333 0.00 0.00 29.93 3.33
2438 2590 7.667557 AGAAGCAGTATCAAGTTACTTACACA 58.332 34.615 0.00 0.00 29.93 3.72
2439 2591 9.074443 GTAGAAGCAGTATCAAGTTACTTACAC 57.926 37.037 0.00 0.00 29.93 2.90
2440 2592 8.799367 TGTAGAAGCAGTATCAAGTTACTTACA 58.201 33.333 0.00 0.00 29.93 2.41
2441 2593 9.804758 ATGTAGAAGCAGTATCAAGTTACTTAC 57.195 33.333 0.00 0.00 29.93 2.34
2443 2595 9.726438 AAATGTAGAAGCAGTATCAAGTTACTT 57.274 29.630 0.00 0.00 29.93 2.24
2455 2607 2.996621 GCGACTCAAATGTAGAAGCAGT 59.003 45.455 0.00 0.00 0.00 4.40
2474 2630 9.474249 GTTTATTTAGCACTAAAAACTCTAGCG 57.526 33.333 6.92 0.00 38.38 4.26
2521 2678 8.718102 TGTGTAAGCTAATGTAAATCCTTCTC 57.282 34.615 0.00 0.00 0.00 2.87
2551 2708 2.192624 GTGCAAATGACACGCAGTTTT 58.807 42.857 0.00 0.00 41.61 2.43
2609 2768 7.068103 CCTGTAATTGGTGGCAAATCTAACATA 59.932 37.037 0.00 0.00 0.00 2.29
2651 2810 3.851051 TGCGATTATGCAGTGGTCA 57.149 47.368 0.00 0.00 40.62 4.02
2791 2952 6.448369 TGGGTTTATCTTTTCTCTTCCTCA 57.552 37.500 0.00 0.00 0.00 3.86
2812 2973 3.992260 TGGACCGTAAATGTGTTTTGG 57.008 42.857 0.00 0.00 0.00 3.28
2911 3073 7.269477 GATTTTAGATCCCTGAAATCACTGG 57.731 40.000 14.02 0.00 46.33 4.00
2971 3150 0.765903 ACATGGCCGAGGAGGATGAT 60.766 55.000 0.00 0.00 45.00 2.45
3118 3297 2.494870 GGCTGCATTCAACTCCAGAATT 59.505 45.455 0.50 0.00 33.64 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.