Multiple sequence alignment - TraesCS4A01G044300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G044300 chr4A 100.000 4797 0 0 1 4797 36803618 36798822 0.000000e+00 8859
1 TraesCS4A01G044300 chr4A 97.122 139 3 1 3875 4012 513375882 513376020 2.890000e-57 233
2 TraesCS4A01G044300 chr4D 90.975 2493 126 43 467 2891 435424005 435421544 0.000000e+00 3265
3 TraesCS4A01G044300 chr4D 90.970 598 21 6 2920 3504 435421545 435420968 0.000000e+00 774
4 TraesCS4A01G044300 chr4D 86.266 699 37 22 4000 4696 435420730 435420089 0.000000e+00 704
5 TraesCS4A01G044300 chr4D 96.218 238 9 0 3639 3876 435420966 435420729 1.620000e-104 390
6 TraesCS4A01G044300 chr4D 83.121 314 39 12 35 348 435424447 435424148 1.700000e-69 274
7 TraesCS4A01G044300 chr4D 92.308 91 3 1 4711 4797 435420099 435420009 5.040000e-25 126
8 TraesCS4A01G044300 chr4B 87.817 1970 112 44 919 2837 536701878 536703770 0.000000e+00 2191
9 TraesCS4A01G044300 chr4B 90.040 994 70 13 2899 3876 536703857 536704837 0.000000e+00 1260
10 TraesCS4A01G044300 chr4B 84.934 531 45 13 4032 4560 536704864 536705361 5.540000e-139 505
11 TraesCS4A01G044300 chr4B 94.805 154 7 1 101 254 536743511 536743359 6.200000e-59 239
12 TraesCS4A01G044300 chr4B 85.644 202 16 2 260 461 536694655 536694843 2.930000e-47 200
13 TraesCS4A01G044300 chr4B 83.663 202 21 5 260 461 536736906 536736717 3.810000e-41 180
14 TraesCS4A01G044300 chr4B 85.000 180 6 3 4618 4797 536579715 536579557 3.840000e-36 163
15 TraesCS4A01G044300 chr4B 90.244 123 12 0 467 589 536694908 536695030 1.380000e-35 161
16 TraesCS4A01G044300 chr5A 99.242 132 1 0 3870 4001 668159947 668160078 6.200000e-59 239
17 TraesCS4A01G044300 chr5A 94.595 148 6 2 3874 4021 154345532 154345677 1.340000e-55 228
18 TraesCS4A01G044300 chr5A 95.745 141 5 1 3861 4001 519946805 519946666 4.830000e-55 226
19 TraesCS4A01G044300 chr5A 96.377 138 2 2 3864 4001 556560654 556560788 1.740000e-54 224
20 TraesCS4A01G044300 chr2B 99.237 131 1 0 3875 4005 171995526 171995396 2.230000e-58 237
21 TraesCS4A01G044300 chr2B 95.745 141 6 0 3868 4008 89552366 89552506 1.340000e-55 228
22 TraesCS4A01G044300 chr7A 99.231 130 1 0 3872 4001 77440538 77440667 8.030000e-58 235
23 TraesCS4A01G044300 chr7D 94.631 149 6 2 3855 4001 32642164 32642312 3.730000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G044300 chr4A 36798822 36803618 4796 True 8859.000000 8859 100.000000 1 4797 1 chr4A.!!$R1 4796
1 TraesCS4A01G044300 chr4D 435420009 435424447 4438 True 922.166667 3265 89.976333 35 4797 6 chr4D.!!$R1 4762
2 TraesCS4A01G044300 chr4B 536701878 536705361 3483 False 1318.666667 2191 87.597000 919 4560 3 chr4B.!!$F2 3641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 599 0.179054 GGCTTCCCGGTATCAGTTCC 60.179 60.0 0.0 0.0 0.00 3.62 F
1322 1436 0.376152 CATGCTGTGACTGATTCGGC 59.624 55.0 0.0 0.0 0.00 5.54 F
1851 1999 1.054406 TAAGGGGAGGAGGAATGCCG 61.054 60.0 0.0 0.0 39.96 5.69 F
2816 2981 0.317160 CACCAACTGCACTCGTAGGA 59.683 55.0 0.0 0.0 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1724 1864 0.616371 ACGCTACTGTTGGCCCATTA 59.384 50.000 0.00 0.00 0.00 1.90 R
2336 2501 1.064758 TGGATGCTTTCAATAGGGCGT 60.065 47.619 0.00 0.00 0.00 5.68 R
3547 3778 1.624336 ACACATGCAGTTGCTTGGAT 58.376 45.000 19.87 8.15 46.56 3.41 R
4606 4848 0.179073 CCAATCGTAGCCCAGGACAG 60.179 60.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.791327 TTGATCTCATATTTAACAGCTTGTCA 57.209 30.769 0.00 0.00 0.00 3.58
29 30 8.429493 TGATCTCATATTTAACAGCTTGTCAG 57.571 34.615 0.00 0.00 0.00 3.51
30 31 7.496920 TGATCTCATATTTAACAGCTTGTCAGG 59.503 37.037 0.00 0.00 0.00 3.86
31 32 5.586243 TCTCATATTTAACAGCTTGTCAGGC 59.414 40.000 0.00 0.00 0.00 4.85
32 33 4.640201 TCATATTTAACAGCTTGTCAGGCC 59.360 41.667 2.85 0.00 0.00 5.19
33 34 1.234821 TTTAACAGCTTGTCAGGCCG 58.765 50.000 2.85 0.00 0.00 6.13
56 57 2.031437 GCTTGTGCTAGTGCTAATGCTC 59.969 50.000 0.00 0.00 40.48 4.26
65 66 1.336125 GTGCTAATGCTCTGCCCAATC 59.664 52.381 0.00 0.00 40.48 2.67
71 72 1.246056 TGCTCTGCCCAATCTGTTGC 61.246 55.000 0.00 0.00 33.90 4.17
75 76 1.228644 TGCCCAATCTGTTGCAGCT 60.229 52.632 1.17 0.00 35.39 4.24
81 82 2.756760 CCAATCTGTTGCAGCTATGGTT 59.243 45.455 1.17 0.00 33.90 3.67
85 86 2.153645 CTGTTGCAGCTATGGTTGACA 58.846 47.619 1.17 0.00 0.00 3.58
89 90 1.473677 TGCAGCTATGGTTGACAATGC 59.526 47.619 0.00 0.00 0.00 3.56
195 196 8.463930 TTTTGAAGAGAACACATAGAACCAAT 57.536 30.769 0.00 0.00 0.00 3.16
196 197 9.567776 TTTTGAAGAGAACACATAGAACCAATA 57.432 29.630 0.00 0.00 0.00 1.90
197 198 9.567776 TTTGAAGAGAACACATAGAACCAATAA 57.432 29.630 0.00 0.00 0.00 1.40
198 199 9.739276 TTGAAGAGAACACATAGAACCAATAAT 57.261 29.630 0.00 0.00 0.00 1.28
233 234 1.203137 GGGGTTTCCACCTAAGCCTTT 60.203 52.381 0.00 0.00 43.65 3.11
235 236 1.272490 GGTTTCCACCTAAGCCTTTGC 59.728 52.381 0.00 0.00 40.44 3.68
236 237 3.081125 GGTTTCCACCTAAGCCTTTGCT 61.081 50.000 0.00 0.00 45.01 3.91
238 239 5.639758 GGTTTCCACCTAAGCCTTTGCTAG 61.640 50.000 0.00 0.00 43.36 3.42
239 240 7.783752 GGTTTCCACCTAAGCCTTTGCTAGA 62.784 48.000 0.00 0.00 43.36 2.43
240 241 8.991561 GGTTTCCACCTAAGCCTTTGCTAGAT 62.992 46.154 0.00 0.00 43.36 1.98
241 242 9.693298 GGTTTCCACCTAAGCCTTTGCTAGATA 62.693 44.444 0.00 0.00 43.36 1.98
248 249 3.131709 GCCTTTGCTAGATATGCTCCA 57.868 47.619 0.00 0.00 33.53 3.86
250 251 3.495806 GCCTTTGCTAGATATGCTCCACT 60.496 47.826 0.00 0.00 33.53 4.00
256 257 3.126858 GCTAGATATGCTCCACTCTCTCG 59.873 52.174 0.00 0.00 0.00 4.04
258 259 2.884012 AGATATGCTCCACTCTCTCGTG 59.116 50.000 0.00 0.00 34.71 4.35
259 260 2.130272 TATGCTCCACTCTCTCGTGT 57.870 50.000 0.00 0.00 33.07 4.49
261 262 1.454201 TGCTCCACTCTCTCGTGTAG 58.546 55.000 0.00 0.00 33.07 2.74
273 274 1.478510 CTCGTGTAGGGCACTCTGAAT 59.521 52.381 0.00 0.00 45.57 2.57
278 279 4.575885 GTGTAGGGCACTCTGAATTTGTA 58.424 43.478 0.00 0.00 44.41 2.41
280 281 6.346096 GTGTAGGGCACTCTGAATTTGTATA 58.654 40.000 0.00 0.00 44.41 1.47
288 289 7.702348 GGCACTCTGAATTTGTATAATCCAAAC 59.298 37.037 0.00 0.00 34.85 2.93
290 291 8.664798 CACTCTGAATTTGTATAATCCAAACGA 58.335 33.333 0.00 0.00 34.85 3.85
308 309 7.487829 TCCAAACGAAGATTTTTCAAAGTTCTG 59.512 33.333 0.00 0.00 0.00 3.02
309 310 6.812481 AACGAAGATTTTTCAAAGTTCTGC 57.188 33.333 0.00 0.00 0.00 4.26
310 311 5.281727 ACGAAGATTTTTCAAAGTTCTGCC 58.718 37.500 0.00 0.00 0.00 4.85
312 313 5.748152 CGAAGATTTTTCAAAGTTCTGCCAA 59.252 36.000 0.00 0.00 0.00 4.52
315 316 6.643388 AGATTTTTCAAAGTTCTGCCAAACT 58.357 32.000 0.00 0.00 41.20 2.66
316 317 7.781056 AGATTTTTCAAAGTTCTGCCAAACTA 58.219 30.769 1.66 0.00 38.52 2.24
324 325 5.262588 AGTTCTGCCAAACTAAAACAAGG 57.737 39.130 0.00 0.00 37.71 3.61
337 338 8.990163 AACTAAAACAAGGGAGTATTTCTTGA 57.010 30.769 8.95 0.00 39.97 3.02
339 340 6.650427 AAAACAAGGGAGTATTTCTTGACC 57.350 37.500 8.95 0.00 39.97 4.02
340 341 4.993705 ACAAGGGAGTATTTCTTGACCA 57.006 40.909 8.95 0.00 39.97 4.02
342 343 4.104102 ACAAGGGAGTATTTCTTGACCACA 59.896 41.667 8.95 0.00 39.97 4.17
343 344 5.222130 ACAAGGGAGTATTTCTTGACCACAT 60.222 40.000 8.95 0.00 39.97 3.21
344 345 4.848357 AGGGAGTATTTCTTGACCACATG 58.152 43.478 0.00 0.00 0.00 3.21
345 346 4.536090 AGGGAGTATTTCTTGACCACATGA 59.464 41.667 0.00 0.00 0.00 3.07
350 351 4.853924 ATTTCTTGACCACATGACCAAC 57.146 40.909 0.00 0.00 31.52 3.77
351 352 2.270352 TCTTGACCACATGACCAACC 57.730 50.000 0.00 0.00 0.00 3.77
352 353 1.774254 TCTTGACCACATGACCAACCT 59.226 47.619 0.00 0.00 0.00 3.50
353 354 2.976185 TCTTGACCACATGACCAACCTA 59.024 45.455 0.00 0.00 0.00 3.08
354 355 3.392947 TCTTGACCACATGACCAACCTAA 59.607 43.478 0.00 0.00 0.00 2.69
355 356 4.042809 TCTTGACCACATGACCAACCTAAT 59.957 41.667 0.00 0.00 0.00 1.73
356 357 3.950397 TGACCACATGACCAACCTAATC 58.050 45.455 0.00 0.00 0.00 1.75
357 358 3.279434 GACCACATGACCAACCTAATCC 58.721 50.000 0.00 0.00 0.00 3.01
358 359 2.288666 CCACATGACCAACCTAATCCG 58.711 52.381 0.00 0.00 0.00 4.18
359 360 2.093181 CCACATGACCAACCTAATCCGA 60.093 50.000 0.00 0.00 0.00 4.55
360 361 3.605634 CACATGACCAACCTAATCCGAA 58.394 45.455 0.00 0.00 0.00 4.30
361 362 3.623060 CACATGACCAACCTAATCCGAAG 59.377 47.826 0.00 0.00 0.00 3.79
362 363 3.517901 ACATGACCAACCTAATCCGAAGA 59.482 43.478 0.00 0.00 0.00 2.87
363 364 3.604875 TGACCAACCTAATCCGAAGAC 57.395 47.619 0.00 0.00 0.00 3.01
364 365 2.901192 TGACCAACCTAATCCGAAGACA 59.099 45.455 0.00 0.00 0.00 3.41
365 366 3.259902 GACCAACCTAATCCGAAGACAC 58.740 50.000 0.00 0.00 0.00 3.67
366 367 2.904434 ACCAACCTAATCCGAAGACACT 59.096 45.455 0.00 0.00 0.00 3.55
367 368 3.262420 CCAACCTAATCCGAAGACACTG 58.738 50.000 0.00 0.00 0.00 3.66
368 369 2.673368 CAACCTAATCCGAAGACACTGC 59.327 50.000 0.00 0.00 0.00 4.40
369 370 2.180276 ACCTAATCCGAAGACACTGCT 58.820 47.619 0.00 0.00 0.00 4.24
370 371 2.166664 ACCTAATCCGAAGACACTGCTC 59.833 50.000 0.00 0.00 0.00 4.26
371 372 2.428890 CCTAATCCGAAGACACTGCTCT 59.571 50.000 0.00 0.00 0.00 4.09
372 373 3.632604 CCTAATCCGAAGACACTGCTCTA 59.367 47.826 0.00 0.00 0.00 2.43
373 374 3.512033 AATCCGAAGACACTGCTCTAC 57.488 47.619 0.00 0.00 0.00 2.59
374 375 1.174783 TCCGAAGACACTGCTCTACC 58.825 55.000 0.00 0.00 0.00 3.18
375 376 1.178276 CCGAAGACACTGCTCTACCT 58.822 55.000 0.00 0.00 0.00 3.08
376 377 1.135257 CCGAAGACACTGCTCTACCTG 60.135 57.143 0.00 0.00 0.00 4.00
377 378 1.734047 CGAAGACACTGCTCTACCTGC 60.734 57.143 0.00 0.00 0.00 4.85
378 379 1.548269 GAAGACACTGCTCTACCTGCT 59.452 52.381 0.00 0.00 0.00 4.24
379 380 0.894141 AGACACTGCTCTACCTGCTG 59.106 55.000 0.00 0.00 35.85 4.41
380 381 0.891373 GACACTGCTCTACCTGCTGA 59.109 55.000 0.00 0.00 34.27 4.26
381 382 1.273606 GACACTGCTCTACCTGCTGAA 59.726 52.381 0.00 0.00 34.27 3.02
382 383 1.001406 ACACTGCTCTACCTGCTGAAC 59.999 52.381 0.00 0.00 34.27 3.18
383 384 1.274728 CACTGCTCTACCTGCTGAACT 59.725 52.381 0.00 0.00 34.27 3.01
384 385 2.493675 CACTGCTCTACCTGCTGAACTA 59.506 50.000 0.00 0.00 34.27 2.24
385 386 3.131933 CACTGCTCTACCTGCTGAACTAT 59.868 47.826 0.00 0.00 34.27 2.12
386 387 4.339530 CACTGCTCTACCTGCTGAACTATA 59.660 45.833 0.00 0.00 34.27 1.31
387 388 5.010516 CACTGCTCTACCTGCTGAACTATAT 59.989 44.000 0.00 0.00 34.27 0.86
388 389 5.010516 ACTGCTCTACCTGCTGAACTATATG 59.989 44.000 0.00 0.00 34.27 1.78
397 398 6.156256 ACCTGCTGAACTATATGACCTTAACA 59.844 38.462 0.00 0.00 0.00 2.41
424 425 7.815840 TTGAAATTTGTCATGTCCACTAAGA 57.184 32.000 0.00 0.00 0.00 2.10
430 431 5.152623 TGTCATGTCCACTAAGAAGAAGG 57.847 43.478 0.00 0.00 0.00 3.46
431 432 4.838423 TGTCATGTCCACTAAGAAGAAGGA 59.162 41.667 0.00 0.00 0.00 3.36
461 462 6.058183 CCATAAAGATTCGGATCCTTCTTGT 58.942 40.000 17.30 11.96 32.44 3.16
462 463 6.017605 CCATAAAGATTCGGATCCTTCTTGTG 60.018 42.308 17.30 17.18 32.44 3.33
463 464 3.550437 AGATTCGGATCCTTCTTGTGG 57.450 47.619 10.75 0.00 32.44 4.17
464 465 3.107601 AGATTCGGATCCTTCTTGTGGA 58.892 45.455 10.75 0.00 38.06 4.02
465 466 3.713764 AGATTCGGATCCTTCTTGTGGAT 59.286 43.478 10.75 0.00 46.05 3.41
493 555 5.348179 CACATCATTAGCAGCTCACTATAGC 59.652 44.000 0.00 0.00 43.11 2.97
513 575 2.350522 CTCTGGAGAACGTCCCAAATG 58.649 52.381 5.90 0.00 46.31 2.32
524 586 2.352715 CGTCCCAAATGAAAAGGCTTCC 60.353 50.000 0.00 0.00 0.00 3.46
525 587 2.028112 GTCCCAAATGAAAAGGCTTCCC 60.028 50.000 0.00 0.00 0.00 3.97
526 588 1.066929 CCCAAATGAAAAGGCTTCCCG 60.067 52.381 0.00 0.00 35.76 5.14
527 589 1.066929 CCAAATGAAAAGGCTTCCCGG 60.067 52.381 0.00 0.00 35.76 5.73
528 590 1.618343 CAAATGAAAAGGCTTCCCGGT 59.382 47.619 0.00 0.00 35.76 5.28
529 591 2.823154 CAAATGAAAAGGCTTCCCGGTA 59.177 45.455 0.00 0.00 35.76 4.02
530 592 3.382083 AATGAAAAGGCTTCCCGGTAT 57.618 42.857 0.00 0.00 35.76 2.73
531 593 2.413310 TGAAAAGGCTTCCCGGTATC 57.587 50.000 0.00 0.00 35.76 2.24
532 594 1.631388 TGAAAAGGCTTCCCGGTATCA 59.369 47.619 0.00 0.00 35.76 2.15
533 595 2.289565 GAAAAGGCTTCCCGGTATCAG 58.710 52.381 0.00 0.00 35.76 2.90
534 596 1.286248 AAAGGCTTCCCGGTATCAGT 58.714 50.000 0.00 0.00 35.76 3.41
535 597 1.286248 AAGGCTTCCCGGTATCAGTT 58.714 50.000 0.00 0.00 35.76 3.16
536 598 0.831307 AGGCTTCCCGGTATCAGTTC 59.169 55.000 0.00 0.00 35.76 3.01
537 599 0.179054 GGCTTCCCGGTATCAGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
538 600 0.179054 GCTTCCCGGTATCAGTTCCC 60.179 60.000 0.00 0.00 0.00 3.97
539 601 1.497161 CTTCCCGGTATCAGTTCCCT 58.503 55.000 0.00 0.00 0.00 4.20
567 629 2.819608 TCCCAGTTCATTTTGCACTAGC 59.180 45.455 0.00 0.00 42.57 3.42
589 651 0.598680 GAGTCACGTTGCTCTGCACT 60.599 55.000 8.43 0.00 38.71 4.40
591 653 0.657840 GTCACGTTGCTCTGCACTTT 59.342 50.000 0.00 0.00 38.71 2.66
593 655 1.063912 TCACGTTGCTCTGCACTTTTG 59.936 47.619 0.00 0.00 38.71 2.44
617 706 5.061064 GCTGCTGTTCGCTATATGTATGTAC 59.939 44.000 0.00 0.00 40.11 2.90
619 708 5.152097 GCTGTTCGCTATATGTATGTACGT 58.848 41.667 0.00 0.00 35.14 3.57
624 713 7.588854 TGTTCGCTATATGTATGTACGTTTCTC 59.411 37.037 0.00 0.00 0.00 2.87
626 715 6.429078 TCGCTATATGTATGTACGTTTCTCCT 59.571 38.462 0.00 0.00 0.00 3.69
629 718 9.257651 GCTATATGTATGTACGTTTCTCCTTTT 57.742 33.333 0.00 0.00 0.00 2.27
649 738 7.822822 TCCTTTTCTGGTTACAAATAGACTAGC 59.177 37.037 0.00 0.00 0.00 3.42
654 743 5.680619 TGGTTACAAATAGACTAGCCATGG 58.319 41.667 7.63 7.63 0.00 3.66
680 769 6.793505 ATATTTATACCTCCCGACTCATCC 57.206 41.667 0.00 0.00 0.00 3.51
682 771 0.539901 ATACCTCCCGACTCATCCGG 60.540 60.000 0.00 0.00 46.10 5.14
726 815 3.353524 CATGTCCAATTGTCAATACGCG 58.646 45.455 3.53 3.53 0.00 6.01
751 843 5.045942 TGTTTAGTCATTCAGTCCCTATGCA 60.046 40.000 0.00 0.00 0.00 3.96
831 923 5.860611 TCAGTTCCGAATTTCTCCTTGTAA 58.139 37.500 0.00 0.00 0.00 2.41
832 924 6.472887 TCAGTTCCGAATTTCTCCTTGTAAT 58.527 36.000 0.00 0.00 0.00 1.89
833 925 6.940298 TCAGTTCCGAATTTCTCCTTGTAATT 59.060 34.615 0.00 0.00 0.00 1.40
834 926 7.023575 CAGTTCCGAATTTCTCCTTGTAATTG 58.976 38.462 0.00 0.00 0.00 2.32
835 927 6.715264 AGTTCCGAATTTCTCCTTGTAATTGT 59.285 34.615 0.00 0.00 0.00 2.71
836 928 7.230712 AGTTCCGAATTTCTCCTTGTAATTGTT 59.769 33.333 0.00 0.00 0.00 2.83
837 929 7.519032 TCCGAATTTCTCCTTGTAATTGTTT 57.481 32.000 0.00 0.00 0.00 2.83
838 930 7.590279 TCCGAATTTCTCCTTGTAATTGTTTC 58.410 34.615 0.00 0.00 0.00 2.78
839 931 7.447238 TCCGAATTTCTCCTTGTAATTGTTTCT 59.553 33.333 0.00 0.00 0.00 2.52
840 932 7.538678 CCGAATTTCTCCTTGTAATTGTTTCTG 59.461 37.037 0.00 0.00 0.00 3.02
841 933 7.061094 CGAATTTCTCCTTGTAATTGTTTCTGC 59.939 37.037 0.00 0.00 0.00 4.26
842 934 6.707440 TTTCTCCTTGTAATTGTTTCTGCA 57.293 33.333 0.00 0.00 0.00 4.41
843 935 6.899393 TTCTCCTTGTAATTGTTTCTGCAT 57.101 33.333 0.00 0.00 0.00 3.96
853 945 8.075574 TGTAATTGTTTCTGCATGTTTACAGAG 58.924 33.333 0.00 0.00 43.43 3.35
854 946 6.639632 ATTGTTTCTGCATGTTTACAGAGT 57.360 33.333 0.00 0.00 43.43 3.24
869 961 7.013655 TGTTTACAGAGTAGAGTACGTTTTCCT 59.986 37.037 0.00 0.00 0.00 3.36
889 981 2.579201 CCTGGTGGCGTACTCAGG 59.421 66.667 11.72 11.72 39.63 3.86
891 983 3.000819 TGGTGGCGTACTCAGGGG 61.001 66.667 0.00 0.00 0.00 4.79
894 993 3.075005 TGGCGTACTCAGGGGCTC 61.075 66.667 0.00 0.00 0.00 4.70
904 1003 2.860971 AGGGGCTCAGGGCAAAGT 60.861 61.111 0.00 0.00 44.01 2.66
909 1008 1.168714 GGCTCAGGGCAAAGTAGTTG 58.831 55.000 0.00 0.00 44.01 3.16
910 1009 1.545651 GGCTCAGGGCAAAGTAGTTGT 60.546 52.381 0.00 0.00 44.01 3.32
911 1010 2.230660 GCTCAGGGCAAAGTAGTTGTT 58.769 47.619 0.00 0.00 39.63 2.83
922 1021 2.557317 AGTAGTTGTTTGACACGGTGG 58.443 47.619 13.48 0.00 0.00 4.61
953 1052 2.128507 TGGACCGTGGGGCAAAAAC 61.129 57.895 0.00 0.00 36.48 2.43
954 1053 2.128507 GGACCGTGGGGCAAAAACA 61.129 57.895 0.00 0.00 36.48 2.83
957 1056 0.833949 ACCGTGGGGCAAAAACAAAT 59.166 45.000 0.00 0.00 36.48 2.32
1149 1263 3.733344 GATGCAAGACCCGGCGCTA 62.733 63.158 7.64 0.00 0.00 4.26
1241 1355 1.153667 CTCTCAGTTCGGCTCCTGC 60.154 63.158 0.00 0.00 38.76 4.85
1297 1411 0.893270 TTGCCTCGATTTGGTGGTGG 60.893 55.000 0.00 0.00 0.00 4.61
1302 1416 2.342650 CGATTTGGTGGTGGGCTGG 61.343 63.158 0.00 0.00 0.00 4.85
1322 1436 0.376152 CATGCTGTGACTGATTCGGC 59.624 55.000 0.00 0.00 0.00 5.54
1345 1459 3.973657 AGATGCTTGTTTGTTTGCAGAG 58.026 40.909 0.00 0.00 38.87 3.35
1492 1632 5.467738 TCAGAGGTTACATGGATCTGGTAT 58.532 41.667 7.10 0.00 38.32 2.73
1504 1644 4.474651 TGGATCTGGTATGATTCTGGTTGT 59.525 41.667 0.00 0.00 0.00 3.32
1527 1667 7.811653 TGTAATTTTGCATACATGTTTCGAGA 58.188 30.769 2.30 0.00 0.00 4.04
1539 1679 4.066646 TGTTTCGAGAAGGATGTTGTGA 57.933 40.909 0.00 0.00 0.00 3.58
1567 1707 4.106197 GGTGTAAGCGTAGATTGACTGAG 58.894 47.826 0.00 0.00 36.12 3.35
1589 1729 3.557595 GGCTCGAATGTTCAGAATACCAG 59.442 47.826 0.00 0.00 0.00 4.00
1631 1771 6.982852 TCTGTACCTTTAGTTCTTCTCTGTG 58.017 40.000 0.00 0.00 0.00 3.66
1636 1776 5.130477 ACCTTTAGTTCTTCTCTGTGGTGAA 59.870 40.000 0.00 0.00 0.00 3.18
1637 1777 5.698545 CCTTTAGTTCTTCTCTGTGGTGAAG 59.301 44.000 0.00 0.00 41.62 3.02
1668 1808 4.967084 ATGTGTAGGCCATTACGGAATA 57.033 40.909 5.01 0.00 36.56 1.75
1724 1864 9.768662 AAATGAAATTTAGTGTTCAAGCAATCT 57.231 25.926 0.00 0.00 46.47 2.40
1763 1911 4.168014 CGTGTTAGAGTTATGCAACGGTA 58.832 43.478 0.00 0.00 39.78 4.02
1770 1918 4.134563 GAGTTATGCAACGGTATTGGGAT 58.865 43.478 0.00 0.00 39.78 3.85
1851 1999 1.054406 TAAGGGGAGGAGGAATGCCG 61.054 60.000 0.00 0.00 39.96 5.69
1952 2112 9.230122 ACAATACATGATCATCAAACTGTGTAA 57.770 29.630 4.86 0.00 0.00 2.41
2123 2283 6.825721 AGTGTTTTAGGATCCTGATGTTGATC 59.174 38.462 25.28 6.51 37.29 2.92
2138 2300 7.946207 TGATGTTGATCTAGTGATCTAACTCC 58.054 38.462 7.42 6.90 46.84 3.85
2190 2352 7.894364 AGTTAATACAGGACTGTTCTCTTCCTA 59.106 37.037 10.57 0.00 41.83 2.94
2267 2430 1.792006 ACGTCAGAATTCCGACCAAC 58.208 50.000 14.72 0.00 0.00 3.77
2283 2446 3.926616 ACCAACGTACAAGAATCTCCTG 58.073 45.455 0.00 0.00 0.00 3.86
2336 2501 2.040278 CCTCCTCCAAACAATCCAGTGA 59.960 50.000 0.00 0.00 0.00 3.41
2337 2502 3.077359 CTCCTCCAAACAATCCAGTGAC 58.923 50.000 0.00 0.00 0.00 3.67
2350 2515 2.009774 CCAGTGACGCCCTATTGAAAG 58.990 52.381 0.00 0.00 0.00 2.62
2355 2520 1.604278 GACGCCCTATTGAAAGCATCC 59.396 52.381 0.00 0.00 0.00 3.51
2665 2830 2.300152 TCTGACAGCCAGTAGACTTTGG 59.700 50.000 0.00 2.16 43.38 3.28
2714 2879 9.109393 TGAATTCTGTATGTCCTAAGTATTTGC 57.891 33.333 7.05 0.00 0.00 3.68
2811 2976 1.528586 CTTCTTCACCAACTGCACTCG 59.471 52.381 0.00 0.00 0.00 4.18
2816 2981 0.317160 CACCAACTGCACTCGTAGGA 59.683 55.000 0.00 0.00 0.00 2.94
2888 3104 6.235231 TCTCTCAGTCTGTTTTGTTTACCT 57.765 37.500 0.00 0.00 0.00 3.08
2889 3105 6.049149 TCTCTCAGTCTGTTTTGTTTACCTG 58.951 40.000 0.00 0.00 0.00 4.00
2890 3106 4.574828 TCTCAGTCTGTTTTGTTTACCTGC 59.425 41.667 0.00 0.00 0.00 4.85
2891 3107 4.265893 TCAGTCTGTTTTGTTTACCTGCA 58.734 39.130 0.00 0.00 0.00 4.41
2892 3108 4.702612 TCAGTCTGTTTTGTTTACCTGCAA 59.297 37.500 0.00 0.00 0.00 4.08
2893 3109 4.798387 CAGTCTGTTTTGTTTACCTGCAAC 59.202 41.667 0.00 0.00 0.00 4.17
2894 3110 4.461081 AGTCTGTTTTGTTTACCTGCAACA 59.539 37.500 0.00 0.00 32.16 3.33
2895 3111 4.798387 GTCTGTTTTGTTTACCTGCAACAG 59.202 41.667 3.89 3.89 41.57 3.16
2896 3112 4.702612 TCTGTTTTGTTTACCTGCAACAGA 59.297 37.500 8.17 8.17 44.86 3.41
2897 3113 4.992688 TGTTTTGTTTACCTGCAACAGAG 58.007 39.130 0.00 0.00 35.57 3.35
2898 3114 4.702612 TGTTTTGTTTACCTGCAACAGAGA 59.297 37.500 0.00 0.00 35.57 3.10
2899 3115 5.163663 TGTTTTGTTTACCTGCAACAGAGAG 60.164 40.000 0.00 0.00 35.57 3.20
2900 3116 4.415881 TTGTTTACCTGCAACAGAGAGA 57.584 40.909 0.00 0.00 35.57 3.10
2901 3117 4.623932 TGTTTACCTGCAACAGAGAGAT 57.376 40.909 0.00 0.00 32.44 2.75
2902 3118 5.738619 TGTTTACCTGCAACAGAGAGATA 57.261 39.130 0.00 0.00 32.44 1.98
2903 3119 6.109156 TGTTTACCTGCAACAGAGAGATAA 57.891 37.500 0.00 0.00 32.44 1.75
2904 3120 6.711277 TGTTTACCTGCAACAGAGAGATAAT 58.289 36.000 0.00 0.00 32.44 1.28
3033 3249 4.475763 ACGAACACAACATAATTCGCAA 57.524 36.364 5.22 0.00 46.00 4.85
3047 3263 3.829886 TTCGCAATTGCTTTACCTCTG 57.170 42.857 26.86 9.12 39.32 3.35
3054 3270 5.585390 CAATTGCTTTACCTCTGCCATTAG 58.415 41.667 0.00 0.00 0.00 1.73
3110 3326 8.369218 AGTTTAGCAGATTGTTTTTGAAATGG 57.631 30.769 0.00 0.00 0.00 3.16
3124 3340 9.921637 GTTTTTGAAATGGGATTGTAATAGACA 57.078 29.630 0.00 0.00 35.78 3.41
3277 3493 7.864379 CACACTTTCAGAGCAAAAATTAGTGAT 59.136 33.333 0.00 0.00 0.00 3.06
3280 3496 7.805071 ACTTTCAGAGCAAAAATTAGTGATTCG 59.195 33.333 0.00 0.00 0.00 3.34
3333 3549 1.682087 GGTGAGCAGATAAACCCACCC 60.682 57.143 0.00 0.00 38.40 4.61
3473 3702 6.074088 CCACTTCTGCAAATACTATCTTAGCG 60.074 42.308 0.00 0.00 0.00 4.26
3479 3708 8.288208 TCTGCAAATACTATCTTAGCGTACTAC 58.712 37.037 0.00 0.00 0.00 2.73
3519 3750 5.964958 TGTTTCAAATCCTCCATGACTTC 57.035 39.130 0.00 0.00 0.00 3.01
3556 3787 8.681806 TGATGTTCGATTAATTAATCCAAGCAA 58.318 29.630 25.51 12.59 39.04 3.91
3559 3790 7.967854 TGTTCGATTAATTAATCCAAGCAACTG 59.032 33.333 25.51 12.69 39.04 3.16
3565 3796 2.736144 AATCCAAGCAACTGCATGTG 57.264 45.000 4.22 0.00 45.16 3.21
3590 3821 5.607477 TGCTAGTAACAGTAAGCTTGTTGT 58.393 37.500 9.86 10.41 35.95 3.32
3594 3825 4.982916 AGTAACAGTAAGCTTGTTGTCTCG 59.017 41.667 9.86 0.00 0.00 4.04
3595 3826 2.755650 ACAGTAAGCTTGTTGTCTCGG 58.244 47.619 9.86 0.00 0.00 4.63
3674 3905 5.808042 ATTAGTCTATTGCAACAGCAGTG 57.192 39.130 0.00 0.00 39.82 3.66
3685 3916 3.610114 GCAACAGCAGTGGTCAATACTTG 60.610 47.826 0.00 0.00 0.00 3.16
3707 3938 3.684981 GCTGCTCCATCTTTCCTTGATCT 60.685 47.826 0.00 0.00 0.00 2.75
3782 4013 1.123928 ATTAAGCTCCCCTCTGACCG 58.876 55.000 0.00 0.00 0.00 4.79
3849 4080 3.603532 CAGTAGACATGCAATCAGTGGT 58.396 45.455 0.00 0.00 0.00 4.16
3859 4090 2.821969 GCAATCAGTGGTTGGTCTTCAT 59.178 45.455 17.68 0.00 0.00 2.57
3875 4107 6.381133 TGGTCTTCATCAACTGATAGAAGCTA 59.619 38.462 17.78 12.29 38.32 3.32
3876 4108 6.699642 GGTCTTCATCAACTGATAGAAGCTAC 59.300 42.308 17.78 14.13 38.32 3.58
3877 4109 7.417342 GGTCTTCATCAACTGATAGAAGCTACT 60.417 40.741 17.78 0.00 38.32 2.57
3878 4110 7.647715 GTCTTCATCAACTGATAGAAGCTACTC 59.352 40.741 17.78 0.00 38.32 2.59
3879 4111 6.398234 TCATCAACTGATAGAAGCTACTCC 57.602 41.667 0.00 0.00 32.63 3.85
3880 4112 5.303078 TCATCAACTGATAGAAGCTACTCCC 59.697 44.000 0.00 0.00 32.63 4.30
3881 4113 4.873010 TCAACTGATAGAAGCTACTCCCT 58.127 43.478 0.00 0.00 0.00 4.20
3882 4114 4.890581 TCAACTGATAGAAGCTACTCCCTC 59.109 45.833 0.00 0.00 0.00 4.30
3883 4115 3.839778 ACTGATAGAAGCTACTCCCTCC 58.160 50.000 0.00 0.00 0.00 4.30
3884 4116 2.817258 CTGATAGAAGCTACTCCCTCCG 59.183 54.545 0.00 0.00 0.00 4.63
3885 4117 2.175069 TGATAGAAGCTACTCCCTCCGT 59.825 50.000 0.00 0.00 0.00 4.69
3886 4118 2.822707 TAGAAGCTACTCCCTCCGTT 57.177 50.000 0.00 0.00 0.00 4.44
3887 4119 1.476477 AGAAGCTACTCCCTCCGTTC 58.524 55.000 0.00 0.00 0.00 3.95
3888 4120 0.460722 GAAGCTACTCCCTCCGTTCC 59.539 60.000 0.00 0.00 0.00 3.62
3889 4121 0.252103 AAGCTACTCCCTCCGTTCCA 60.252 55.000 0.00 0.00 0.00 3.53
3890 4122 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
3891 4123 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
3892 4124 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
3893 4125 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
3894 4126 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
3895 4127 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
3896 4128 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
3897 4129 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
3898 4130 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
3899 4131 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
3900 4132 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
3901 4133 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
3902 4134 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
3903 4135 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
3904 4136 4.517453 TCCGTTCCAAATTACTTGTCTTGG 59.483 41.667 0.00 0.00 39.80 3.61
3905 4137 4.517453 CCGTTCCAAATTACTTGTCTTGGA 59.483 41.667 0.00 0.00 44.32 3.53
3906 4138 5.183140 CCGTTCCAAATTACTTGTCTTGGAT 59.817 40.000 3.38 0.00 45.10 3.41
3907 4139 6.294508 CCGTTCCAAATTACTTGTCTTGGATT 60.295 38.462 3.38 0.00 45.10 3.01
3908 4140 7.145323 CGTTCCAAATTACTTGTCTTGGATTT 58.855 34.615 3.38 0.00 45.10 2.17
3909 4141 7.114811 CGTTCCAAATTACTTGTCTTGGATTTG 59.885 37.037 3.38 0.00 45.10 2.32
3910 4142 7.595819 TCCAAATTACTTGTCTTGGATTTGT 57.404 32.000 0.00 0.00 41.83 2.83
3911 4143 7.657336 TCCAAATTACTTGTCTTGGATTTGTC 58.343 34.615 0.00 0.00 41.83 3.18
3912 4144 7.505585 TCCAAATTACTTGTCTTGGATTTGTCT 59.494 33.333 0.00 0.00 41.83 3.41
3913 4145 8.792633 CCAAATTACTTGTCTTGGATTTGTCTA 58.207 33.333 0.00 0.00 40.72 2.59
3914 4146 9.831737 CAAATTACTTGTCTTGGATTTGTCTAG 57.168 33.333 0.00 0.00 32.62 2.43
3915 4147 9.793259 AAATTACTTGTCTTGGATTTGTCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
3916 4148 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
3918 4150 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
3919 4151 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
3920 4152 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
3921 4153 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
3922 4154 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
3923 4155 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
3924 4156 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
3925 4157 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
3926 4158 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
3942 4174 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
3943 4175 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
3944 4176 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
3945 4177 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
3948 4180 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
3952 4184 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
3953 4185 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
3954 4186 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
3955 4187 7.014808 AGACTCATTTTAGTGCTAGATACCTCC 59.985 40.741 0.00 0.00 0.00 4.30
3956 4188 6.085555 TCATTTTAGTGCTAGATACCTCCG 57.914 41.667 0.00 0.00 0.00 4.63
3957 4189 5.597182 TCATTTTAGTGCTAGATACCTCCGT 59.403 40.000 0.00 0.00 0.00 4.69
3958 4190 6.774170 TCATTTTAGTGCTAGATACCTCCGTA 59.226 38.462 0.00 0.00 0.00 4.02
3959 4191 7.450634 TCATTTTAGTGCTAGATACCTCCGTAT 59.549 37.037 0.00 0.00 37.92 3.06
3971 4203 7.690952 GATACCTCCGTATCTAGACAAATCT 57.309 40.000 0.00 0.00 45.11 2.40
3972 4204 8.789825 GATACCTCCGTATCTAGACAAATCTA 57.210 38.462 0.00 0.00 45.11 1.98
3973 4205 9.228949 GATACCTCCGTATCTAGACAAATCTAA 57.771 37.037 0.00 0.00 45.11 2.10
3974 4206 7.513371 ACCTCCGTATCTAGACAAATCTAAG 57.487 40.000 0.00 0.00 36.98 2.18
3975 4207 7.288560 ACCTCCGTATCTAGACAAATCTAAGA 58.711 38.462 0.00 0.00 36.98 2.10
3976 4208 7.229106 ACCTCCGTATCTAGACAAATCTAAGAC 59.771 40.741 0.00 0.00 36.98 3.01
3977 4209 7.228906 CCTCCGTATCTAGACAAATCTAAGACA 59.771 40.741 0.00 0.00 36.98 3.41
3978 4210 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
3979 4211 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
3980 4212 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
3987 4219 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
3988 4220 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
3989 4221 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
3990 4222 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
4009 4241 2.253610 ACGGAGGGAGTAATTGTGTGA 58.746 47.619 0.00 0.00 0.00 3.58
4015 4247 5.283457 AGGGAGTAATTGTGTGAGCTATC 57.717 43.478 0.00 0.00 0.00 2.08
4016 4248 4.716784 AGGGAGTAATTGTGTGAGCTATCA 59.283 41.667 0.00 0.00 0.00 2.15
4090 4323 5.284864 CCGATTGCGCACAGAGATATATAT 58.715 41.667 11.12 0.00 35.83 0.86
4091 4324 6.438763 CCGATTGCGCACAGAGATATATATA 58.561 40.000 11.12 0.00 35.83 0.86
4092 4325 6.580416 CCGATTGCGCACAGAGATATATATAG 59.420 42.308 11.12 0.00 35.83 1.31
4093 4326 6.087423 CGATTGCGCACAGAGATATATATAGC 59.913 42.308 11.12 0.00 0.00 2.97
4094 4327 5.835113 TGCGCACAGAGATATATATAGCA 57.165 39.130 5.66 2.69 0.00 3.49
4095 4328 6.207691 TGCGCACAGAGATATATATAGCAA 57.792 37.500 5.66 0.00 0.00 3.91
4096 4329 6.809869 TGCGCACAGAGATATATATAGCAAT 58.190 36.000 5.66 0.00 0.00 3.56
4142 4375 1.070758 GTTCCTGAGCAGTTGAGGTGA 59.929 52.381 0.00 0.00 0.00 4.02
4164 4397 2.595386 GCCTAATGTTTTGTGGCGAAG 58.405 47.619 0.00 0.00 33.96 3.79
4265 4498 2.813172 TGCATCGTCAATGACACAACAT 59.187 40.909 14.24 0.00 37.59 2.71
4327 4560 1.933853 GCGTTTGCGGAGTTCAGATAT 59.066 47.619 0.00 0.00 38.78 1.63
4334 4567 4.160329 TGCGGAGTTCAGATATCCCTATT 58.840 43.478 0.00 0.00 0.00 1.73
4335 4568 4.220821 TGCGGAGTTCAGATATCCCTATTC 59.779 45.833 0.00 0.00 0.00 1.75
4336 4569 4.382147 GCGGAGTTCAGATATCCCTATTCC 60.382 50.000 0.00 1.52 0.00 3.01
4338 4571 5.126384 CGGAGTTCAGATATCCCTATTCCTC 59.874 48.000 0.00 0.00 0.00 3.71
4339 4572 5.423931 GGAGTTCAGATATCCCTATTCCTCC 59.576 48.000 0.00 2.41 0.00 4.30
4340 4573 5.346270 AGTTCAGATATCCCTATTCCTCCC 58.654 45.833 0.00 0.00 0.00 4.30
4341 4574 5.078573 AGTTCAGATATCCCTATTCCTCCCT 59.921 44.000 0.00 0.00 0.00 4.20
4342 4575 6.280649 AGTTCAGATATCCCTATTCCTCCCTA 59.719 42.308 0.00 0.00 0.00 3.53
4343 4576 6.952430 TCAGATATCCCTATTCCTCCCTAT 57.048 41.667 0.00 0.00 0.00 2.57
4344 4577 6.687549 TCAGATATCCCTATTCCTCCCTATG 58.312 44.000 0.00 0.00 0.00 2.23
4345 4578 5.843421 CAGATATCCCTATTCCTCCCTATGG 59.157 48.000 0.00 0.00 0.00 2.74
4346 4579 3.515888 ATCCCTATTCCTCCCTATGGG 57.484 52.381 0.00 0.00 46.11 4.00
4347 4580 2.170379 TCCCTATTCCTCCCTATGGGT 58.830 52.381 2.25 0.00 44.74 4.51
4348 4581 2.158004 TCCCTATTCCTCCCTATGGGTG 60.158 54.545 2.25 0.08 44.74 4.61
4349 4582 2.158004 CCCTATTCCTCCCTATGGGTGA 60.158 54.545 6.30 0.77 44.74 4.02
4350 4583 3.598264 CCTATTCCTCCCTATGGGTGAA 58.402 50.000 6.30 8.91 44.74 3.18
4355 4588 4.965283 TCCTCCCTATGGGTGAATTTTT 57.035 40.909 6.30 0.00 44.74 1.94
4356 4589 4.609301 TCCTCCCTATGGGTGAATTTTTG 58.391 43.478 6.30 0.00 44.74 2.44
4363 4596 6.204495 CCCTATGGGTGAATTTTTGTTTGTTG 59.796 38.462 0.00 0.00 38.25 3.33
4390 4623 7.534282 TGTTGAACGTGCATGATTAAATGTAT 58.466 30.769 14.17 0.00 0.00 2.29
4410 4643 6.479436 TGTATTAAACGATTTGTGTATGCGG 58.521 36.000 0.00 0.00 0.00 5.69
4527 4768 5.808030 CCTAGAAATCAAGTCGGAAGAACTC 59.192 44.000 0.00 0.00 45.01 3.01
4528 4769 4.570930 AGAAATCAAGTCGGAAGAACTCC 58.429 43.478 0.00 0.00 45.01 3.85
4529 4770 3.336138 AATCAAGTCGGAAGAACTCCC 57.664 47.619 0.00 0.00 45.01 4.30
4530 4771 0.601558 TCAAGTCGGAAGAACTCCCG 59.398 55.000 0.00 0.00 45.01 5.14
4597 4839 0.240945 GGACGATTTGTGCAAGTGGG 59.759 55.000 0.00 0.00 39.04 4.61
4602 4844 0.527565 ATTTGTGCAAGTGGGCGATC 59.472 50.000 0.00 0.00 36.28 3.69
4606 4848 1.086634 GTGCAAGTGGGCGATCTCTC 61.087 60.000 0.00 0.00 36.28 3.20
4614 4856 1.739049 GGCGATCTCTCTGTCCTGG 59.261 63.158 0.00 0.00 0.00 4.45
4639 4881 6.142817 GCTACGATTGGGCTTGTTTAATATG 58.857 40.000 0.00 0.00 0.00 1.78
4658 4900 1.153958 GCTGTTCGATTGGGCTTGC 60.154 57.895 0.00 0.00 0.00 4.01
4686 4928 4.354162 GGCCGGCCTACCCAACAA 62.354 66.667 38.76 0.00 0.00 2.83
4687 4929 3.060000 GCCGGCCTACCCAACAAC 61.060 66.667 18.11 0.00 0.00 3.32
4688 4930 2.360726 CCGGCCTACCCAACAACC 60.361 66.667 0.00 0.00 0.00 3.77
4689 4931 2.754375 CGGCCTACCCAACAACCT 59.246 61.111 0.00 0.00 0.00 3.50
4690 4932 1.074248 CGGCCTACCCAACAACCTT 59.926 57.895 0.00 0.00 0.00 3.50
4691 4933 1.241315 CGGCCTACCCAACAACCTTG 61.241 60.000 0.00 0.00 0.00 3.61
4692 4934 0.898326 GGCCTACCCAACAACCTTGG 60.898 60.000 0.00 0.00 39.25 3.61
4693 4935 0.111639 GCCTACCCAACAACCTTGGA 59.888 55.000 0.41 0.00 42.06 3.53
4694 4936 1.886655 GCCTACCCAACAACCTTGGAG 60.887 57.143 0.41 0.00 42.06 3.86
4695 4937 1.271926 CCTACCCAACAACCTTGGAGG 60.272 57.143 0.41 0.00 42.06 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.230122 TGACAAGCTGTTAAATATGAGATCAAA 57.770 29.630 0.00 0.00 0.00 2.69
3 4 8.791327 TGACAAGCTGTTAAATATGAGATCAA 57.209 30.769 0.00 0.00 0.00 2.57
4 5 7.496920 CCTGACAAGCTGTTAAATATGAGATCA 59.503 37.037 0.00 0.00 0.00 2.92
5 6 7.519649 GCCTGACAAGCTGTTAAATATGAGATC 60.520 40.741 0.00 0.00 0.00 2.75
6 7 6.261826 GCCTGACAAGCTGTTAAATATGAGAT 59.738 38.462 0.00 0.00 0.00 2.75
7 8 5.586243 GCCTGACAAGCTGTTAAATATGAGA 59.414 40.000 0.00 0.00 0.00 3.27
8 9 5.220931 GGCCTGACAAGCTGTTAAATATGAG 60.221 44.000 0.00 0.00 0.00 2.90
9 10 4.640201 GGCCTGACAAGCTGTTAAATATGA 59.360 41.667 0.00 0.00 0.00 2.15
10 11 4.496341 CGGCCTGACAAGCTGTTAAATATG 60.496 45.833 0.00 0.00 0.00 1.78
11 12 3.627577 CGGCCTGACAAGCTGTTAAATAT 59.372 43.478 0.00 0.00 0.00 1.28
12 13 3.006940 CGGCCTGACAAGCTGTTAAATA 58.993 45.455 0.00 0.00 0.00 1.40
13 14 1.812571 CGGCCTGACAAGCTGTTAAAT 59.187 47.619 0.00 0.00 0.00 1.40
14 15 1.234821 CGGCCTGACAAGCTGTTAAA 58.765 50.000 0.00 0.00 0.00 1.52
15 16 2.927004 CGGCCTGACAAGCTGTTAA 58.073 52.632 0.00 0.00 0.00 2.01
16 17 4.693532 CGGCCTGACAAGCTGTTA 57.306 55.556 0.00 0.00 0.00 2.41
19 20 3.730761 GCACGGCCTGACAAGCTG 61.731 66.667 0.00 3.19 42.55 4.24
20 21 3.482232 AAGCACGGCCTGACAAGCT 62.482 57.895 0.00 0.00 0.00 3.74
21 22 2.980233 AAGCACGGCCTGACAAGC 60.980 61.111 0.00 0.00 0.00 4.01
22 23 1.893808 ACAAGCACGGCCTGACAAG 60.894 57.895 0.00 0.00 0.00 3.16
23 24 2.186160 CACAAGCACGGCCTGACAA 61.186 57.895 0.00 0.00 0.00 3.18
24 25 2.591429 CACAAGCACGGCCTGACA 60.591 61.111 0.00 0.00 0.00 3.58
25 26 4.030452 GCACAAGCACGGCCTGAC 62.030 66.667 0.00 0.00 41.58 3.51
26 27 2.786539 CTAGCACAAGCACGGCCTGA 62.787 60.000 0.00 0.00 45.49 3.86
27 28 2.358615 TAGCACAAGCACGGCCTG 60.359 61.111 0.00 0.00 45.49 4.85
28 29 2.046892 CTAGCACAAGCACGGCCT 60.047 61.111 0.00 0.00 45.49 5.19
29 30 2.358737 ACTAGCACAAGCACGGCC 60.359 61.111 0.00 0.00 45.49 6.13
30 31 2.863153 CACTAGCACAAGCACGGC 59.137 61.111 0.00 0.00 45.49 5.68
31 32 0.389817 TAGCACTAGCACAAGCACGG 60.390 55.000 0.00 0.00 45.49 4.94
32 33 1.428448 TTAGCACTAGCACAAGCACG 58.572 50.000 0.00 0.00 45.49 5.34
33 34 2.476854 GCATTAGCACTAGCACAAGCAC 60.477 50.000 0.00 0.00 45.49 4.40
56 57 1.214589 GCTGCAACAGATTGGGCAG 59.785 57.895 15.93 15.93 46.03 4.85
65 66 2.153645 TGTCAACCATAGCTGCAACAG 58.846 47.619 1.02 0.00 34.12 3.16
71 72 2.093890 TGGCATTGTCAACCATAGCTG 58.906 47.619 0.00 0.00 0.00 4.24
75 76 5.268387 ACCTATTTGGCATTGTCAACCATA 58.732 37.500 2.53 0.00 40.22 2.74
81 82 5.565509 TCTACAACCTATTTGGCATTGTCA 58.434 37.500 5.26 0.00 39.84 3.58
85 86 7.296628 TGTTTTCTACAACCTATTTGGCATT 57.703 32.000 0.00 0.00 39.84 3.56
89 90 8.410141 TCACTTTGTTTTCTACAACCTATTTGG 58.590 33.333 0.00 0.00 46.09 3.28
198 199 8.883302 GGTGGAAACCCCTACATTATATAGTTA 58.117 37.037 0.00 0.00 35.38 2.24
199 200 7.575129 AGGTGGAAACCCCTACATTATATAGTT 59.425 37.037 0.00 0.00 35.38 2.24
207 208 3.308904 GCTTAGGTGGAAACCCCTACATT 60.309 47.826 0.00 0.00 33.09 2.71
211 212 1.203518 AGGCTTAGGTGGAAACCCCTA 60.204 52.381 0.00 0.00 35.38 3.53
233 234 4.078537 GAGAGAGTGGAGCATATCTAGCA 58.921 47.826 0.00 0.00 0.00 3.49
235 236 4.154015 CACGAGAGAGTGGAGCATATCTAG 59.846 50.000 0.00 0.00 38.40 2.43
236 237 4.068599 CACGAGAGAGTGGAGCATATCTA 58.931 47.826 0.00 0.00 38.40 1.98
238 239 2.621055 ACACGAGAGAGTGGAGCATATC 59.379 50.000 0.00 0.00 45.80 1.63
239 240 2.660572 ACACGAGAGAGTGGAGCATAT 58.339 47.619 0.00 0.00 45.80 1.78
240 241 2.130272 ACACGAGAGAGTGGAGCATA 57.870 50.000 0.00 0.00 45.80 3.14
241 242 2.020720 CTACACGAGAGAGTGGAGCAT 58.979 52.381 0.00 0.00 45.00 3.79
245 246 0.680280 GCCCTACACGAGAGAGTGGA 60.680 60.000 0.00 0.00 45.80 4.02
246 247 0.965866 TGCCCTACACGAGAGAGTGG 60.966 60.000 0.00 0.00 45.80 4.00
247 248 0.171455 GTGCCCTACACGAGAGAGTG 59.829 60.000 0.00 0.00 46.83 3.51
248 249 2.569183 GTGCCCTACACGAGAGAGT 58.431 57.895 0.00 0.00 40.07 3.24
258 259 7.173390 GGATTATACAAATTCAGAGTGCCCTAC 59.827 40.741 0.00 0.00 0.00 3.18
259 260 7.147391 TGGATTATACAAATTCAGAGTGCCCTA 60.147 37.037 0.00 0.00 0.00 3.53
261 262 5.827797 TGGATTATACAAATTCAGAGTGCCC 59.172 40.000 0.00 0.00 0.00 5.36
278 279 9.981114 ACTTTGAAAAATCTTCGTTTGGATTAT 57.019 25.926 0.00 0.00 32.65 1.28
280 281 8.716646 AACTTTGAAAAATCTTCGTTTGGATT 57.283 26.923 0.00 0.00 34.14 3.01
288 289 5.280945 TGGCAGAACTTTGAAAAATCTTCG 58.719 37.500 0.00 0.00 0.00 3.79
290 291 7.105588 AGTTTGGCAGAACTTTGAAAAATCTT 58.894 30.769 8.59 0.00 36.49 2.40
299 300 6.035975 CCTTGTTTTAGTTTGGCAGAACTTTG 59.964 38.462 16.37 4.57 40.24 2.77
300 301 6.106003 CCTTGTTTTAGTTTGGCAGAACTTT 58.894 36.000 16.37 1.78 40.24 2.66
308 309 5.977489 ATACTCCCTTGTTTTAGTTTGGC 57.023 39.130 0.00 0.00 0.00 4.52
309 310 8.178313 AGAAATACTCCCTTGTTTTAGTTTGG 57.822 34.615 0.00 0.00 0.00 3.28
310 311 9.463443 CAAGAAATACTCCCTTGTTTTAGTTTG 57.537 33.333 0.00 0.00 34.27 2.93
312 313 8.847196 GTCAAGAAATACTCCCTTGTTTTAGTT 58.153 33.333 0.00 0.00 38.61 2.24
315 316 7.229907 GTGGTCAAGAAATACTCCCTTGTTTTA 59.770 37.037 0.00 0.00 38.61 1.52
316 317 6.040504 GTGGTCAAGAAATACTCCCTTGTTTT 59.959 38.462 0.00 0.00 38.61 2.43
324 325 4.636206 GGTCATGTGGTCAAGAAATACTCC 59.364 45.833 0.00 0.00 0.00 3.85
337 338 2.355716 CGGATTAGGTTGGTCATGTGGT 60.356 50.000 0.00 0.00 0.00 4.16
339 340 3.260475 TCGGATTAGGTTGGTCATGTG 57.740 47.619 0.00 0.00 0.00 3.21
340 341 3.517901 TCTTCGGATTAGGTTGGTCATGT 59.482 43.478 0.00 0.00 0.00 3.21
342 343 3.517901 TGTCTTCGGATTAGGTTGGTCAT 59.482 43.478 0.00 0.00 0.00 3.06
343 344 2.901192 TGTCTTCGGATTAGGTTGGTCA 59.099 45.455 0.00 0.00 0.00 4.02
344 345 3.056035 AGTGTCTTCGGATTAGGTTGGTC 60.056 47.826 0.00 0.00 0.00 4.02
345 346 2.904434 AGTGTCTTCGGATTAGGTTGGT 59.096 45.455 0.00 0.00 0.00 3.67
350 351 2.428890 AGAGCAGTGTCTTCGGATTAGG 59.571 50.000 0.00 0.00 0.00 2.69
351 352 3.791973 AGAGCAGTGTCTTCGGATTAG 57.208 47.619 0.00 0.00 0.00 1.73
352 353 3.380637 GGTAGAGCAGTGTCTTCGGATTA 59.619 47.826 0.00 0.00 0.00 1.75
353 354 2.166664 GGTAGAGCAGTGTCTTCGGATT 59.833 50.000 0.00 0.00 0.00 3.01
354 355 1.751924 GGTAGAGCAGTGTCTTCGGAT 59.248 52.381 0.00 0.00 0.00 4.18
355 356 1.174783 GGTAGAGCAGTGTCTTCGGA 58.825 55.000 0.00 0.00 0.00 4.55
356 357 1.135257 CAGGTAGAGCAGTGTCTTCGG 60.135 57.143 0.00 0.00 0.00 4.30
357 358 1.734047 GCAGGTAGAGCAGTGTCTTCG 60.734 57.143 0.00 0.00 0.00 3.79
358 359 1.548269 AGCAGGTAGAGCAGTGTCTTC 59.452 52.381 0.00 0.00 0.00 2.87
359 360 1.274728 CAGCAGGTAGAGCAGTGTCTT 59.725 52.381 0.00 0.00 0.00 3.01
360 361 0.894141 CAGCAGGTAGAGCAGTGTCT 59.106 55.000 0.00 0.00 0.00 3.41
361 362 0.891373 TCAGCAGGTAGAGCAGTGTC 59.109 55.000 0.00 0.00 0.00 3.67
362 363 1.001406 GTTCAGCAGGTAGAGCAGTGT 59.999 52.381 0.00 0.00 0.00 3.55
363 364 1.274728 AGTTCAGCAGGTAGAGCAGTG 59.725 52.381 0.00 0.00 0.00 3.66
364 365 1.638529 AGTTCAGCAGGTAGAGCAGT 58.361 50.000 0.00 0.00 0.00 4.40
365 366 5.242615 TCATATAGTTCAGCAGGTAGAGCAG 59.757 44.000 0.00 0.00 0.00 4.24
366 367 5.010112 GTCATATAGTTCAGCAGGTAGAGCA 59.990 44.000 0.00 0.00 0.00 4.26
367 368 5.465935 GTCATATAGTTCAGCAGGTAGAGC 58.534 45.833 0.00 0.00 0.00 4.09
368 369 5.772672 AGGTCATATAGTTCAGCAGGTAGAG 59.227 44.000 0.00 0.00 0.00 2.43
369 370 5.706447 AGGTCATATAGTTCAGCAGGTAGA 58.294 41.667 0.00 0.00 0.00 2.59
370 371 6.412362 AAGGTCATATAGTTCAGCAGGTAG 57.588 41.667 0.00 0.00 0.00 3.18
371 372 7.343574 TGTTAAGGTCATATAGTTCAGCAGGTA 59.656 37.037 0.00 0.00 0.00 3.08
372 373 6.156256 TGTTAAGGTCATATAGTTCAGCAGGT 59.844 38.462 0.00 0.00 0.00 4.00
373 374 6.582636 TGTTAAGGTCATATAGTTCAGCAGG 58.417 40.000 0.00 0.00 0.00 4.85
374 375 8.492673 TTTGTTAAGGTCATATAGTTCAGCAG 57.507 34.615 0.00 0.00 0.00 4.24
375 376 9.461312 AATTTGTTAAGGTCATATAGTTCAGCA 57.539 29.630 0.00 0.00 0.00 4.41
376 377 9.722056 CAATTTGTTAAGGTCATATAGTTCAGC 57.278 33.333 0.00 0.00 0.00 4.26
397 398 9.480053 CTTAGTGGACATGACAAATTTCAATTT 57.520 29.630 0.00 0.00 39.07 1.82
411 412 8.970859 ATAAATCCTTCTTCTTAGTGGACATG 57.029 34.615 0.00 0.00 31.65 3.21
412 413 8.214364 GGATAAATCCTTCTTCTTAGTGGACAT 58.786 37.037 1.52 0.00 43.73 3.06
413 414 7.565680 GGATAAATCCTTCTTCTTAGTGGACA 58.434 38.462 1.52 0.00 43.73 4.02
430 431 9.454859 AAGGATCCGAATCTTTATGGATAAATC 57.545 33.333 5.98 0.00 41.21 2.17
431 432 9.454859 GAAGGATCCGAATCTTTATGGATAAAT 57.545 33.333 5.98 0.00 41.21 1.40
442 443 3.519510 TCCACAAGAAGGATCCGAATCTT 59.480 43.478 18.94 18.94 32.55 2.40
446 447 2.571653 ACATCCACAAGAAGGATCCGAA 59.428 45.455 5.98 0.00 43.90 4.30
449 450 3.691609 GTGAACATCCACAAGAAGGATCC 59.308 47.826 2.48 2.48 43.90 3.36
464 465 4.334759 GTGAGCTGCTAATGATGTGAACAT 59.665 41.667 0.15 0.00 39.70 2.71
465 466 3.686241 GTGAGCTGCTAATGATGTGAACA 59.314 43.478 0.15 0.00 0.00 3.18
493 555 2.028112 TCATTTGGGACGTTCTCCAGAG 60.028 50.000 0.00 0.00 41.63 3.35
500 562 2.296190 AGCCTTTTCATTTGGGACGTTC 59.704 45.455 0.00 0.00 0.00 3.95
507 569 1.066929 CCGGGAAGCCTTTTCATTTGG 60.067 52.381 0.00 0.00 0.00 3.28
513 575 2.289565 CTGATACCGGGAAGCCTTTTC 58.710 52.381 6.32 0.00 0.00 2.29
524 586 0.753262 CTGGAGGGAACTGATACCGG 59.247 60.000 0.00 0.00 44.43 5.28
525 587 0.105039 GCTGGAGGGAACTGATACCG 59.895 60.000 0.00 0.00 44.43 4.02
526 588 1.204146 TGCTGGAGGGAACTGATACC 58.796 55.000 0.00 0.00 44.43 2.73
527 589 2.224402 GGATGCTGGAGGGAACTGATAC 60.224 54.545 0.00 0.00 44.43 2.24
528 590 2.050144 GGATGCTGGAGGGAACTGATA 58.950 52.381 0.00 0.00 44.43 2.15
529 591 0.842635 GGATGCTGGAGGGAACTGAT 59.157 55.000 0.00 0.00 44.43 2.90
530 592 1.274703 GGGATGCTGGAGGGAACTGA 61.275 60.000 0.00 0.00 44.43 3.41
531 593 1.225704 GGGATGCTGGAGGGAACTG 59.774 63.158 0.00 0.00 44.43 3.16
533 595 1.225704 CTGGGATGCTGGAGGGAAC 59.774 63.158 0.00 0.00 0.00 3.62
534 596 0.846427 AACTGGGATGCTGGAGGGAA 60.846 55.000 0.00 0.00 0.00 3.97
535 597 1.229951 AACTGGGATGCTGGAGGGA 60.230 57.895 0.00 0.00 0.00 4.20
536 598 1.225704 GAACTGGGATGCTGGAGGG 59.774 63.158 0.00 0.00 0.00 4.30
537 599 0.549950 ATGAACTGGGATGCTGGAGG 59.450 55.000 0.00 0.00 0.00 4.30
538 600 2.431954 AATGAACTGGGATGCTGGAG 57.568 50.000 0.00 0.00 0.00 3.86
539 601 2.827322 CAAAATGAACTGGGATGCTGGA 59.173 45.455 0.00 0.00 0.00 3.86
569 631 1.661509 TGCAGAGCAACGTGACTCG 60.662 57.895 11.26 8.32 38.54 4.18
570 632 0.598680 AGTGCAGAGCAACGTGACTC 60.599 55.000 9.50 9.50 41.47 3.36
571 633 0.179073 AAGTGCAGAGCAACGTGACT 60.179 50.000 0.00 0.00 41.47 3.41
572 634 0.657840 AAAGTGCAGAGCAACGTGAC 59.342 50.000 0.00 0.00 41.47 3.67
573 635 1.063912 CAAAAGTGCAGAGCAACGTGA 59.936 47.619 0.00 0.00 41.47 4.35
574 636 1.469917 CAAAAGTGCAGAGCAACGTG 58.530 50.000 0.00 0.00 41.47 4.49
575 637 3.924238 CAAAAGTGCAGAGCAACGT 57.076 47.368 0.00 0.00 41.47 3.99
597 659 7.590322 AGAAACGTACATACATATAGCGAACAG 59.410 37.037 0.00 0.00 0.00 3.16
598 660 7.420002 AGAAACGTACATACATATAGCGAACA 58.580 34.615 0.00 0.00 0.00 3.18
599 661 7.060403 GGAGAAACGTACATACATATAGCGAAC 59.940 40.741 0.00 0.00 0.00 3.95
600 662 7.040892 AGGAGAAACGTACATACATATAGCGAA 60.041 37.037 0.00 0.00 0.00 4.70
601 663 6.429078 AGGAGAAACGTACATACATATAGCGA 59.571 38.462 0.00 0.00 0.00 4.93
602 664 6.609533 AGGAGAAACGTACATACATATAGCG 58.390 40.000 0.00 0.00 0.00 4.26
617 706 5.744666 TTGTAACCAGAAAAGGAGAAACG 57.255 39.130 0.00 0.00 0.00 3.60
619 708 9.063615 GTCTATTTGTAACCAGAAAAGGAGAAA 57.936 33.333 0.00 0.00 0.00 2.52
624 713 7.065923 GGCTAGTCTATTTGTAACCAGAAAAGG 59.934 40.741 0.00 0.00 0.00 3.11
626 715 7.455058 TGGCTAGTCTATTTGTAACCAGAAAA 58.545 34.615 0.00 0.00 0.00 2.29
629 718 6.408092 CCATGGCTAGTCTATTTGTAACCAGA 60.408 42.308 0.00 0.00 0.00 3.86
649 738 5.365605 TCGGGAGGTATAAATATAGCCATGG 59.634 44.000 7.63 7.63 37.37 3.66
654 743 6.770746 TGAGTCGGGAGGTATAAATATAGC 57.229 41.667 2.20 2.20 37.03 2.97
680 769 2.763651 GGGTGATCGAGAAAACCCG 58.236 57.895 10.75 0.00 42.79 5.28
682 771 2.357075 GAAGGGGTGATCGAGAAAACC 58.643 52.381 0.00 0.00 0.00 3.27
726 815 5.294552 GCATAGGGACTGAATGACTAAACAC 59.705 44.000 0.00 0.00 41.52 3.32
751 843 2.766263 TGGGTCTCTGATTCGTTAGCAT 59.234 45.455 0.00 0.00 0.00 3.79
831 923 6.639632 ACTCTGTAAACATGCAGAAACAAT 57.360 33.333 0.00 0.00 40.68 2.71
832 924 6.989759 TCTACTCTGTAAACATGCAGAAACAA 59.010 34.615 0.00 0.00 40.68 2.83
833 925 6.521162 TCTACTCTGTAAACATGCAGAAACA 58.479 36.000 0.00 0.00 40.68 2.83
834 926 6.647067 ACTCTACTCTGTAAACATGCAGAAAC 59.353 38.462 0.00 0.00 40.68 2.78
835 927 6.759272 ACTCTACTCTGTAAACATGCAGAAA 58.241 36.000 0.00 0.00 40.68 2.52
836 928 6.346477 ACTCTACTCTGTAAACATGCAGAA 57.654 37.500 0.00 0.00 40.68 3.02
837 929 5.984695 ACTCTACTCTGTAAACATGCAGA 57.015 39.130 0.00 0.00 39.17 4.26
838 930 5.739630 CGTACTCTACTCTGTAAACATGCAG 59.260 44.000 0.00 0.00 0.00 4.41
839 931 5.182570 ACGTACTCTACTCTGTAAACATGCA 59.817 40.000 0.00 0.00 0.00 3.96
840 932 5.638783 ACGTACTCTACTCTGTAAACATGC 58.361 41.667 0.00 0.00 0.00 4.06
841 933 8.516811 AAAACGTACTCTACTCTGTAAACATG 57.483 34.615 0.00 0.00 0.00 3.21
842 934 7.811713 GGAAAACGTACTCTACTCTGTAAACAT 59.188 37.037 0.00 0.00 0.00 2.71
843 935 7.013655 AGGAAAACGTACTCTACTCTGTAAACA 59.986 37.037 0.00 0.00 0.00 2.83
853 945 3.678548 CAGGCAAGGAAAACGTACTCTAC 59.321 47.826 0.00 0.00 0.00 2.59
854 946 3.306502 CCAGGCAAGGAAAACGTACTCTA 60.307 47.826 0.00 0.00 0.00 2.43
889 981 0.038310 AACTACTTTGCCCTGAGCCC 59.962 55.000 0.00 0.00 42.71 5.19
891 983 1.897560 ACAACTACTTTGCCCTGAGC 58.102 50.000 0.00 0.00 39.01 4.26
894 993 3.380004 TGTCAAACAACTACTTTGCCCTG 59.620 43.478 0.00 0.00 39.01 4.45
904 1003 1.301423 GCCACCGTGTCAAACAACTA 58.699 50.000 0.00 0.00 0.00 2.24
953 1052 3.305335 CCCCACGGTTTTCTCAGAATTTG 60.305 47.826 0.00 0.00 0.00 2.32
954 1053 2.890945 CCCCACGGTTTTCTCAGAATTT 59.109 45.455 0.00 0.00 0.00 1.82
957 1056 0.536460 GCCCCACGGTTTTCTCAGAA 60.536 55.000 0.00 0.00 0.00 3.02
1137 1251 4.753662 TCCAGTAGCGCCGGGTCT 62.754 66.667 2.29 0.00 0.00 3.85
1251 1365 1.745264 GAGGAGATCAGGGGAAGCG 59.255 63.158 0.00 0.00 0.00 4.68
1297 1411 2.360852 AGTCACAGCATGCCAGCC 60.361 61.111 15.66 0.00 42.53 4.85
1302 1416 0.376152 CCGAATCAGTCACAGCATGC 59.624 55.000 10.51 10.51 42.53 4.06
1322 1436 2.722629 CTGCAAACAAACAAGCATCTCG 59.277 45.455 0.00 0.00 36.28 4.04
1345 1459 6.148480 CCTTATCCAGCACTATGAAAGTATGC 59.852 42.308 0.00 0.00 35.76 3.14
1411 1525 3.577649 TCAGAGAGTAGCAAACCTTCG 57.422 47.619 0.00 0.00 0.00 3.79
1492 1632 7.890515 TGTATGCAAAATTACAACCAGAATCA 58.109 30.769 0.00 0.00 0.00 2.57
1504 1644 7.967854 CCTTCTCGAAACATGTATGCAAAATTA 59.032 33.333 0.00 0.00 0.00 1.40
1527 1667 3.117888 ACACCAGAAGTCACAACATCCTT 60.118 43.478 0.00 0.00 0.00 3.36
1539 1679 4.219944 TCAATCTACGCTTACACCAGAAGT 59.780 41.667 0.00 0.00 0.00 3.01
1567 1707 3.531538 TGGTATTCTGAACATTCGAGCC 58.468 45.455 0.00 0.00 0.00 4.70
1589 1729 2.481185 CAGAAATGGCATGGTTTTGTGC 59.519 45.455 0.00 0.00 40.55 4.57
1631 1771 3.679389 ACACATTCCATCTCACTTCACC 58.321 45.455 0.00 0.00 0.00 4.02
1636 1776 2.171448 GGCCTACACATTCCATCTCACT 59.829 50.000 0.00 0.00 0.00 3.41
1637 1777 2.092968 TGGCCTACACATTCCATCTCAC 60.093 50.000 3.32 0.00 0.00 3.51
1716 1856 2.762327 CTGTTGGCCCATTAGATTGCTT 59.238 45.455 0.00 0.00 0.00 3.91
1724 1864 0.616371 ACGCTACTGTTGGCCCATTA 59.384 50.000 0.00 0.00 0.00 1.90
1763 1911 4.869941 AGGCCTCCTCATCCCAAT 57.130 55.556 0.00 0.00 0.00 3.16
1796 1944 1.556911 GAAGATCTGGGTGCTCTCCAA 59.443 52.381 0.00 0.00 33.36 3.53
1851 1999 4.584325 TGGCATATAATTGAAGGCTGAACC 59.416 41.667 0.00 0.00 39.61 3.62
1979 2139 8.439286 GCTTTCTGTGTCAACTAGAGATAAAAG 58.561 37.037 0.00 1.85 0.00 2.27
1982 2142 6.993079 TGCTTTCTGTGTCAACTAGAGATAA 58.007 36.000 0.00 0.00 0.00 1.75
2088 2248 8.301002 CAGGATCCTAAAACACTATAGTAGAGC 58.699 40.741 15.67 0.00 0.00 4.09
2138 2300 6.105657 TGTACGCATACAAACAATGATCTG 57.894 37.500 0.00 0.00 38.40 2.90
2170 2332 5.828859 GCTATAGGAAGAGAACAGTCCTGTA 59.171 44.000 1.04 0.00 44.13 2.74
2210 2372 1.366319 ATGAAGGCTGAAGGACAGGT 58.634 50.000 0.00 0.00 45.82 4.00
2267 2430 2.672961 TGCCAGGAGATTCTTGTACG 57.327 50.000 0.00 0.00 0.00 3.67
2283 2446 2.357637 TGCGCTAAACCAATCTATTGCC 59.642 45.455 9.73 0.00 36.48 4.52
2336 2501 1.064758 TGGATGCTTTCAATAGGGCGT 60.065 47.619 0.00 0.00 0.00 5.68
2337 2502 1.679139 TGGATGCTTTCAATAGGGCG 58.321 50.000 0.00 0.00 0.00 6.13
2605 2770 9.381033 TGCATGTAATTTCCCATGAATAAAAAG 57.619 29.630 13.52 0.00 40.70 2.27
2678 2843 8.267183 AGGACATACAGAATTCAATGTGATACA 58.733 33.333 19.63 0.00 32.87 2.29
2714 2879 7.865385 TGCAATTGTTACCAGTTTAAGCTAAAG 59.135 33.333 7.40 0.00 0.00 1.85
2794 2959 2.061773 CTACGAGTGCAGTTGGTGAAG 58.938 52.381 13.47 1.77 0.00 3.02
2895 3111 9.053135 CGCGACACTAAGTTTATATTATCTCTC 57.947 37.037 0.00 0.00 0.00 3.20
2896 3112 8.781196 TCGCGACACTAAGTTTATATTATCTCT 58.219 33.333 3.71 0.00 0.00 3.10
2897 3113 8.945758 TCGCGACACTAAGTTTATATTATCTC 57.054 34.615 3.71 0.00 0.00 2.75
2898 3114 9.909644 ATTCGCGACACTAAGTTTATATTATCT 57.090 29.630 9.15 0.00 0.00 1.98
2900 3116 9.909644 AGATTCGCGACACTAAGTTTATATTAT 57.090 29.630 9.15 0.00 0.00 1.28
2901 3117 9.740239 AAGATTCGCGACACTAAGTTTATATTA 57.260 29.630 9.15 0.00 0.00 0.98
2902 3118 8.644318 AAGATTCGCGACACTAAGTTTATATT 57.356 30.769 9.15 0.00 0.00 1.28
2903 3119 8.644318 AAAGATTCGCGACACTAAGTTTATAT 57.356 30.769 9.15 0.00 0.00 0.86
2904 3120 9.571810 TTAAAGATTCGCGACACTAAGTTTATA 57.428 29.630 9.15 0.00 0.00 0.98
2918 3134 5.728255 CAATACAGAGGTTAAAGATTCGCG 58.272 41.667 0.00 0.00 0.00 5.87
3033 3249 4.860022 ACTAATGGCAGAGGTAAAGCAAT 58.140 39.130 0.00 0.00 0.00 3.56
3047 3263 5.659048 GTACTGCATCAAGTACTAATGGC 57.341 43.478 16.03 10.18 46.00 4.40
3102 3318 9.123902 CATCTGTCTATTACAATCCCATTTCAA 57.876 33.333 0.00 0.00 37.74 2.69
3110 3326 7.865706 AAACACCATCTGTCTATTACAATCC 57.134 36.000 0.00 0.00 37.74 3.01
3120 3336 8.594550 AGTAACATAACTAAACACCATCTGTCT 58.405 33.333 0.00 0.00 30.29 3.41
3124 3340 9.383519 CATGAGTAACATAACTAAACACCATCT 57.616 33.333 0.00 0.00 37.46 2.90
3277 3493 4.868171 AGCTTTAACGATGCAGTATTCGAA 59.132 37.500 13.96 0.00 0.00 3.71
3280 3496 5.975410 AGAGCTTTAACGATGCAGTATTC 57.025 39.130 0.00 0.00 0.00 1.75
3333 3549 5.635280 TCAGTAATCAGAAACAAGCGAGAAG 59.365 40.000 0.00 0.00 0.00 2.85
3370 3599 3.760684 GCCCTGAATTCAGAACACAGAAT 59.239 43.478 32.49 0.00 46.59 2.40
3378 3607 3.074390 TCCTTGAAGCCCTGAATTCAGAA 59.926 43.478 32.49 18.07 46.59 3.02
3505 3736 3.127791 ACCAGAGAAGTCATGGAGGAT 57.872 47.619 8.98 0.00 37.54 3.24
3519 3750 9.698309 AATTAATCGAACATCATAGTACCAGAG 57.302 33.333 0.00 0.00 0.00 3.35
3547 3778 1.624336 ACACATGCAGTTGCTTGGAT 58.376 45.000 19.87 8.15 46.56 3.41
3565 3796 6.018180 ACAACAAGCTTACTGTTACTAGCAAC 60.018 38.462 0.00 0.00 36.11 4.17
3590 3821 4.323417 ACATCTTGTAAAACATGCCGAGA 58.677 39.130 0.00 0.00 0.00 4.04
3594 3825 5.402270 GTGTCAACATCTTGTAAAACATGCC 59.598 40.000 0.00 0.00 0.00 4.40
3595 3826 5.402270 GGTGTCAACATCTTGTAAAACATGC 59.598 40.000 0.00 0.00 0.00 4.06
3685 3916 2.119801 TCAAGGAAAGATGGAGCAGC 57.880 50.000 0.00 0.00 0.00 5.25
3707 3938 5.951148 CCTGAGAGATAGAGATAATGAGCCA 59.049 44.000 0.00 0.00 0.00 4.75
3782 4013 3.997021 CACAGATGTCACCAACTTCCTAC 59.003 47.826 0.00 0.00 33.55 3.18
3849 4080 5.877012 GCTTCTATCAGTTGATGAAGACCAA 59.123 40.000 23.36 3.39 42.53 3.67
3859 4090 4.873010 AGGGAGTAGCTTCTATCAGTTGA 58.127 43.478 0.00 0.00 0.00 3.18
3875 4107 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
3876 4108 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
3877 4109 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
3878 4110 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
3879 4111 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
3880 4112 5.334879 CCAAGACAAGTAATTTGGAACGGAG 60.335 44.000 0.00 0.00 42.05 4.63
3881 4113 4.517453 CCAAGACAAGTAATTTGGAACGGA 59.483 41.667 0.00 0.00 42.05 4.69
3882 4114 4.517453 TCCAAGACAAGTAATTTGGAACGG 59.483 41.667 2.52 0.00 44.38 4.44
3883 4115 5.682943 TCCAAGACAAGTAATTTGGAACG 57.317 39.130 2.52 0.00 44.38 3.95
3887 4119 7.661040 AGACAAATCCAAGACAAGTAATTTGG 58.339 34.615 9.60 0.00 41.25 3.28
3888 4120 9.831737 CTAGACAAATCCAAGACAAGTAATTTG 57.168 33.333 0.00 0.00 42.68 2.32
3889 4121 9.793259 TCTAGACAAATCCAAGACAAGTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
3890 4122 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
3892 4124 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
3893 4125 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
3894 4126 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
3895 4127 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
3896 4128 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
3897 4129 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
3898 4130 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
3899 4131 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
3900 4132 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
3901 4133 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
3902 4134 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
3916 4148 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
3917 4149 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
3918 4150 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
3919 4151 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
3922 4154 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
3926 4158 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
3927 4159 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
3928 4160 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
3929 4161 7.014808 GGAGGTATCTAGCACTAAAATGAGTCT 59.985 40.741 0.00 0.00 0.00 3.24
3930 4162 7.149307 GGAGGTATCTAGCACTAAAATGAGTC 58.851 42.308 0.00 0.00 0.00 3.36
3931 4163 6.239064 CGGAGGTATCTAGCACTAAAATGAGT 60.239 42.308 0.00 0.00 0.00 3.41
3932 4164 6.153067 CGGAGGTATCTAGCACTAAAATGAG 58.847 44.000 0.00 0.00 0.00 2.90
3933 4165 5.597182 ACGGAGGTATCTAGCACTAAAATGA 59.403 40.000 0.00 0.00 0.00 2.57
3934 4166 5.844004 ACGGAGGTATCTAGCACTAAAATG 58.156 41.667 0.00 0.00 0.00 2.32
3935 4167 7.778185 ATACGGAGGTATCTAGCACTAAAAT 57.222 36.000 0.00 0.00 34.18 1.82
3948 4180 9.233649 CTTAGATTTGTCTAGATACGGAGGTAT 57.766 37.037 0.00 0.00 42.01 2.73
3949 4181 8.435187 TCTTAGATTTGTCTAGATACGGAGGTA 58.565 37.037 0.00 0.00 0.00 3.08
3950 4182 7.229106 GTCTTAGATTTGTCTAGATACGGAGGT 59.771 40.741 0.00 0.00 0.00 3.85
3951 4183 7.228906 TGTCTTAGATTTGTCTAGATACGGAGG 59.771 40.741 0.00 0.00 0.00 4.30
3952 4184 8.155821 TGTCTTAGATTTGTCTAGATACGGAG 57.844 38.462 0.00 0.00 0.00 4.63
3953 4185 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
3954 4186 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
3961 4193 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
3962 4194 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
3963 4195 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
3964 4196 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
3965 4197 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
3966 4198 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
3967 4199 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
3968 4200 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
3969 4201 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
3970 4202 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
3971 4203 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
3972 4204 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
3973 4205 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
3974 4206 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3975 4207 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3976 4208 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3977 4209 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3978 4210 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3979 4211 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3980 4212 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3981 4213 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
3982 4214 1.856629 TTACTCCCTCCGTTCCGAAT 58.143 50.000 0.00 0.00 0.00 3.34
3983 4215 1.856629 ATTACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
3984 4216 1.479323 CAATTACTCCCTCCGTTCCGA 59.521 52.381 0.00 0.00 0.00 4.55
3985 4217 1.206371 ACAATTACTCCCTCCGTTCCG 59.794 52.381 0.00 0.00 0.00 4.30
3986 4218 2.027469 ACACAATTACTCCCTCCGTTCC 60.027 50.000 0.00 0.00 0.00 3.62
3987 4219 3.000727 CACACAATTACTCCCTCCGTTC 58.999 50.000 0.00 0.00 0.00 3.95
3988 4220 2.635915 TCACACAATTACTCCCTCCGTT 59.364 45.455 0.00 0.00 0.00 4.44
3989 4221 2.233922 CTCACACAATTACTCCCTCCGT 59.766 50.000 0.00 0.00 0.00 4.69
3990 4222 2.893637 CTCACACAATTACTCCCTCCG 58.106 52.381 0.00 0.00 0.00 4.63
3991 4223 2.237392 AGCTCACACAATTACTCCCTCC 59.763 50.000 0.00 0.00 0.00 4.30
3992 4224 3.618690 AGCTCACACAATTACTCCCTC 57.381 47.619 0.00 0.00 0.00 4.30
3993 4225 4.716784 TGATAGCTCACACAATTACTCCCT 59.283 41.667 0.00 0.00 0.00 4.20
3994 4226 5.023533 TGATAGCTCACACAATTACTCCC 57.976 43.478 0.00 0.00 0.00 4.30
3995 4227 4.509600 GCTGATAGCTCACACAATTACTCC 59.490 45.833 0.00 0.00 38.45 3.85
3996 4228 5.111989 TGCTGATAGCTCACACAATTACTC 58.888 41.667 0.00 0.00 42.97 2.59
3997 4229 5.089970 TGCTGATAGCTCACACAATTACT 57.910 39.130 0.00 0.00 42.97 2.24
3998 4230 5.998454 ATGCTGATAGCTCACACAATTAC 57.002 39.130 0.00 0.00 42.97 1.89
3999 4231 6.820335 AGTATGCTGATAGCTCACACAATTA 58.180 36.000 0.00 0.00 42.97 1.40
4009 4241 9.650539 CTCATTACATTAAGTATGCTGATAGCT 57.349 33.333 2.24 0.00 42.97 3.32
4015 4247 8.491152 GCAGTACTCATTACATTAAGTATGCTG 58.509 37.037 0.00 0.00 37.81 4.41
4016 4248 7.657761 GGCAGTACTCATTACATTAAGTATGCT 59.342 37.037 0.00 0.00 37.81 3.79
4090 4323 8.945193 ACAGGGTTCTTCCTATTATTATTGCTA 58.055 33.333 0.00 0.00 34.92 3.49
4091 4324 7.721399 CACAGGGTTCTTCCTATTATTATTGCT 59.279 37.037 0.00 0.00 34.92 3.91
4092 4325 7.502561 ACACAGGGTTCTTCCTATTATTATTGC 59.497 37.037 0.00 0.00 34.92 3.56
4093 4326 8.980481 ACACAGGGTTCTTCCTATTATTATTG 57.020 34.615 0.00 0.00 34.92 1.90
4094 4327 9.408648 CAACACAGGGTTCTTCCTATTATTATT 57.591 33.333 0.00 0.00 37.72 1.40
4095 4328 7.998964 CCAACACAGGGTTCTTCCTATTATTAT 59.001 37.037 0.00 0.00 37.72 1.28
4096 4329 7.343357 CCAACACAGGGTTCTTCCTATTATTA 58.657 38.462 0.00 0.00 37.72 0.98
4148 4381 0.383949 ACGCTTCGCCACAAAACATT 59.616 45.000 0.00 0.00 0.00 2.71
4164 4397 0.305313 TTGTACCGAACTTGCAACGC 59.695 50.000 0.00 0.00 0.00 4.84
4166 4399 3.181575 GCAATTTGTACCGAACTTGCAAC 59.818 43.478 13.01 0.00 38.96 4.17
4201 4434 4.399978 CAAATTACCGCGACCTTGTTAAG 58.600 43.478 8.23 0.00 0.00 1.85
4202 4435 3.365164 GCAAATTACCGCGACCTTGTTAA 60.365 43.478 8.23 0.00 0.00 2.01
4203 4436 2.160022 GCAAATTACCGCGACCTTGTTA 59.840 45.455 8.23 0.00 0.00 2.41
4207 4440 0.802494 CTGCAAATTACCGCGACCTT 59.198 50.000 8.23 0.00 0.00 3.50
4265 4498 4.478206 TGCTTCAAAACAAAATGTCCCA 57.522 36.364 0.00 0.00 0.00 4.37
4339 4572 6.765512 ACAACAAACAAAAATTCACCCATAGG 59.234 34.615 0.00 0.00 40.04 2.57
4340 4573 7.784633 ACAACAAACAAAAATTCACCCATAG 57.215 32.000 0.00 0.00 0.00 2.23
4341 4574 7.607991 ACAACAACAAACAAAAATTCACCCATA 59.392 29.630 0.00 0.00 0.00 2.74
4342 4575 6.432472 ACAACAACAAACAAAAATTCACCCAT 59.568 30.769 0.00 0.00 0.00 4.00
4343 4576 5.765182 ACAACAACAAACAAAAATTCACCCA 59.235 32.000 0.00 0.00 0.00 4.51
4344 4577 6.247727 ACAACAACAAACAAAAATTCACCC 57.752 33.333 0.00 0.00 0.00 4.61
4345 4578 7.355778 TCAACAACAACAAACAAAAATTCACC 58.644 30.769 0.00 0.00 0.00 4.02
4346 4579 8.677635 GTTCAACAACAACAAACAAAAATTCAC 58.322 29.630 0.00 0.00 32.14 3.18
4347 4580 7.584123 CGTTCAACAACAACAAACAAAAATTCA 59.416 29.630 0.00 0.00 32.14 2.57
4348 4581 7.584485 ACGTTCAACAACAACAAACAAAAATTC 59.416 29.630 0.00 0.00 32.14 2.17
4349 4582 7.374491 CACGTTCAACAACAACAAACAAAAATT 59.626 29.630 0.00 0.00 32.14 1.82
4350 4583 6.848296 CACGTTCAACAACAACAAACAAAAAT 59.152 30.769 0.00 0.00 32.14 1.82
4355 4588 2.726760 GCACGTTCAACAACAACAAACA 59.273 40.909 0.00 0.00 32.14 2.83
4356 4589 2.726760 TGCACGTTCAACAACAACAAAC 59.273 40.909 0.00 0.00 32.14 2.93
4363 4596 6.143758 ACATTTAATCATGCACGTTCAACAAC 59.856 34.615 0.00 0.00 0.00 3.32
4390 4623 5.122554 ACATCCGCATACACAAATCGTTTAA 59.877 36.000 0.00 0.00 0.00 1.52
4476 4709 9.803315 GTAAATTGTGGAACTCTCTTTCTTTTT 57.197 29.630 0.00 0.00 38.04 1.94
4477 4710 8.414003 GGTAAATTGTGGAACTCTCTTTCTTTT 58.586 33.333 0.00 0.00 38.04 2.27
4481 4714 6.004574 AGGGTAAATTGTGGAACTCTCTTTC 58.995 40.000 0.00 0.00 38.04 2.62
4492 4733 7.414098 CGACTTGATTTCTAGGGTAAATTGTGG 60.414 40.741 0.00 0.00 0.00 4.17
4597 4839 1.739049 CCCAGGACAGAGAGATCGC 59.261 63.158 0.00 0.00 0.00 4.58
4602 4844 0.394488 TCGTAGCCCAGGACAGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
4606 4848 0.179073 CCAATCGTAGCCCAGGACAG 60.179 60.000 0.00 0.00 0.00 3.51
4614 4856 1.173913 AAACAAGCCCAATCGTAGCC 58.826 50.000 0.00 0.00 0.00 3.93
4639 4881 1.508088 CAAGCCCAATCGAACAGCC 59.492 57.895 0.00 0.00 0.00 4.85
4707 4949 2.039418 GCCAGTTCCTCCAAGGTTTTT 58.961 47.619 0.00 0.00 36.53 1.94
4708 4950 1.063266 TGCCAGTTCCTCCAAGGTTTT 60.063 47.619 0.00 0.00 36.53 2.43
4709 4951 0.555769 TGCCAGTTCCTCCAAGGTTT 59.444 50.000 0.00 0.00 36.53 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.