Multiple sequence alignment - TraesCS4A01G043900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G043900 chr4A 100.000 4962 0 0 1 4962 36415760 36410799 0.000000e+00 9164.0
1 TraesCS4A01G043900 chr4A 87.964 2127 178 40 1892 3993 492533201 492531128 0.000000e+00 2438.0
2 TraesCS4A01G043900 chr4A 89.623 424 37 3 844 1267 492534707 492534291 2.630000e-147 532.0
3 TraesCS4A01G043900 chr4A 81.633 637 75 28 3998 4611 492531092 492530475 1.610000e-134 490.0
4 TraesCS4A01G043900 chr4A 85.081 248 23 4 1438 1673 579865431 579865186 1.780000e-59 241.0
5 TraesCS4A01G043900 chr4A 87.931 116 11 2 1315 1427 492533453 492533338 3.120000e-27 134.0
6 TraesCS4A01G043900 chr4D 93.360 2771 114 30 1885 4611 435064726 435061982 0.000000e+00 4034.0
7 TraesCS4A01G043900 chr4D 89.062 1344 102 27 2670 3993 82293380 82292062 0.000000e+00 1626.0
8 TraesCS4A01G043900 chr4D 86.895 847 85 15 1831 2672 82294264 82293439 0.000000e+00 926.0
9 TraesCS4A01G043900 chr4D 91.054 626 50 5 164 785 435066448 435065825 0.000000e+00 841.0
10 TraesCS4A01G043900 chr4D 95.409 501 15 6 821 1319 435065822 435065328 0.000000e+00 791.0
11 TraesCS4A01G043900 chr4D 90.843 415 32 5 844 1258 82295520 82295112 7.260000e-153 551.0
12 TraesCS4A01G043900 chr4D 81.221 639 75 27 3998 4611 82292025 82291407 1.620000e-129 473.0
13 TraesCS4A01G043900 chr4D 93.949 314 14 3 4609 4919 435061429 435061118 2.090000e-128 470.0
14 TraesCS4A01G043900 chr4D 90.909 330 21 4 1454 1774 435065097 435064768 7.630000e-118 435.0
15 TraesCS4A01G043900 chr4D 86.747 249 17 6 1438 1673 22018364 22018609 3.810000e-66 263.0
16 TraesCS4A01G043900 chr4D 89.119 193 5 6 1315 1493 435065284 435065094 5.000000e-55 226.0
17 TraesCS4A01G043900 chr4D 89.655 116 9 2 1315 1427 82294466 82294351 1.440000e-30 145.0
18 TraesCS4A01G043900 chr4D 95.652 46 2 0 1813 1858 435064773 435064728 1.920000e-09 75.0
19 TraesCS4A01G043900 chr4B 93.780 1479 48 12 1811 3266 535249382 535247925 0.000000e+00 2182.0
20 TraesCS4A01G043900 chr4B 88.484 1346 109 28 2671 3993 116214332 116213010 0.000000e+00 1585.0
21 TraesCS4A01G043900 chr4B 90.956 1161 75 16 164 1313 535252263 535251122 0.000000e+00 1535.0
22 TraesCS4A01G043900 chr4B 92.458 716 41 5 3291 3998 535247749 535247039 0.000000e+00 1011.0
23 TraesCS4A01G043900 chr4B 86.951 843 86 15 1831 2672 116215220 116214401 0.000000e+00 926.0
24 TraesCS4A01G043900 chr4B 85.120 625 62 21 4000 4611 535246976 535246370 1.180000e-170 610.0
25 TraesCS4A01G043900 chr4B 89.815 432 31 7 844 1267 116216526 116216100 4.370000e-150 542.0
26 TraesCS4A01G043900 chr4B 89.766 342 20 6 1454 1784 535249708 535249371 1.650000e-114 424.0
27 TraesCS4A01G043900 chr4B 90.030 331 15 2 4632 4962 535226168 535225856 3.570000e-111 412.0
28 TraesCS4A01G043900 chr4B 90.566 159 9 4 4457 4611 116212641 116212485 6.510000e-49 206.0
29 TraesCS4A01G043900 chr4B 80.528 303 23 8 4338 4611 535237228 535236933 3.030000e-47 200.0
30 TraesCS4A01G043900 chr4B 89.655 116 9 2 1315 1427 116215423 116215308 1.440000e-30 145.0
31 TraesCS4A01G043900 chr4B 89.423 104 5 3 4828 4930 535245331 535245233 5.210000e-25 126.0
32 TraesCS4A01G043900 chr4B 92.063 63 5 0 1382 1444 535250164 535250102 6.840000e-14 89.8
33 TraesCS4A01G043900 chr1A 87.952 249 12 9 1438 1673 581437311 581437068 1.360000e-70 278.0
34 TraesCS4A01G043900 chr5D 87.097 248 17 5 1438 1672 440780813 440780568 2.940000e-67 267.0
35 TraesCS4A01G043900 chr5B 86.640 247 19 5 1438 1672 536311641 536311397 1.370000e-65 261.0
36 TraesCS4A01G043900 chr5B 80.085 236 34 6 1451 1675 41671320 41671553 3.970000e-36 163.0
37 TraesCS4A01G043900 chr2A 85.417 240 23 8 1438 1672 19379238 19379470 6.420000e-59 239.0
38 TraesCS4A01G043900 chr2A 81.857 237 27 8 1449 1672 772826194 772825961 8.480000e-43 185.0
39 TraesCS4A01G043900 chr2A 83.425 181 16 6 1502 1670 166754057 166754235 6.650000e-34 156.0
40 TraesCS4A01G043900 chr2A 100.000 30 0 0 2670 2699 603084249 603084278 6.940000e-04 56.5
41 TraesCS4A01G043900 chr5A 86.979 192 9 6 1438 1615 556778796 556778607 8.420000e-48 202.0
42 TraesCS4A01G043900 chr3D 80.645 248 32 9 1449 1683 226986736 226986492 1.420000e-40 178.0
43 TraesCS4A01G043900 chr7B 80.851 235 32 6 1452 1675 312132402 312132170 6.600000e-39 172.0
44 TraesCS4A01G043900 chr2D 86.335 161 13 5 1438 1594 623909377 623909222 3.070000e-37 167.0
45 TraesCS4A01G043900 chr3A 80.349 229 33 10 1449 1673 302743622 302743402 3.970000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G043900 chr4A 36410799 36415760 4961 True 9164.000000 9164 100.000000 1 4962 1 chr4A.!!$R1 4961
1 TraesCS4A01G043900 chr4A 492530475 492534707 4232 True 898.500000 2438 86.787750 844 4611 4 chr4A.!!$R3 3767
2 TraesCS4A01G043900 chr4D 435061118 435066448 5330 True 981.714286 4034 92.778857 164 4919 7 chr4D.!!$R2 4755
3 TraesCS4A01G043900 chr4D 82291407 82295520 4113 True 744.200000 1626 87.535200 844 4611 5 chr4D.!!$R1 3767
4 TraesCS4A01G043900 chr4B 535245233 535252263 7030 True 853.971429 2182 90.509429 164 4930 7 chr4B.!!$R4 4766
5 TraesCS4A01G043900 chr4B 116212485 116216526 4041 True 680.800000 1585 89.094200 844 4611 5 chr4B.!!$R3 3767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 947 0.035056 CAAGAACCCAGCCCACTAGG 60.035 60.0 0.0 0.0 39.47 3.02 F
1791 3947 0.871057 CACACACACACACACACACA 59.129 50.0 0.0 0.0 0.00 3.72 F
2462 4630 0.824759 AGCTACGCAGGTTAGGAAGG 59.175 55.0 0.0 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 3932 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.0 0.00 3.82 R
3214 5487 1.674651 CACTGCACATGCTCCAGCT 60.675 57.895 5.31 0.0 42.66 4.24 R
4111 6637 0.036875 GTGTTCCAGACTTCCAGGGG 59.963 60.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.952188 AAAGTAAGTAGCATTTCTTTTTCTGTC 57.048 29.630 0.00 0.00 28.85 3.51
43 44 8.677148 AGTAAGTAGCATTTCTTTTTCTGTCA 57.323 30.769 0.00 0.00 0.00 3.58
44 45 8.778358 AGTAAGTAGCATTTCTTTTTCTGTCAG 58.222 33.333 0.00 0.00 0.00 3.51
45 46 6.566197 AGTAGCATTTCTTTTTCTGTCAGG 57.434 37.500 0.00 0.00 0.00 3.86
46 47 4.248691 AGCATTTCTTTTTCTGTCAGGC 57.751 40.909 0.00 0.00 0.00 4.85
47 48 3.638160 AGCATTTCTTTTTCTGTCAGGCA 59.362 39.130 0.00 0.00 0.00 4.75
48 49 3.985925 GCATTTCTTTTTCTGTCAGGCAG 59.014 43.478 0.00 0.00 46.34 4.85
58 59 2.418368 TGTCAGGCAGAACTGTTTGT 57.582 45.000 0.00 0.00 39.48 2.83
59 60 2.288666 TGTCAGGCAGAACTGTTTGTC 58.711 47.619 0.00 0.00 39.48 3.18
60 61 2.288666 GTCAGGCAGAACTGTTTGTCA 58.711 47.619 0.00 0.00 39.48 3.58
61 62 2.682856 GTCAGGCAGAACTGTTTGTCAA 59.317 45.455 0.00 0.00 39.48 3.18
62 63 2.682856 TCAGGCAGAACTGTTTGTCAAC 59.317 45.455 0.00 0.00 39.48 3.18
63 64 2.024414 AGGCAGAACTGTTTGTCAACC 58.976 47.619 0.00 0.00 31.02 3.77
64 65 1.268539 GGCAGAACTGTTTGTCAACCG 60.269 52.381 0.00 0.00 31.02 4.44
65 66 1.268539 GCAGAACTGTTTGTCAACCGG 60.269 52.381 0.00 0.00 31.02 5.28
66 67 2.014128 CAGAACTGTTTGTCAACCGGT 58.986 47.619 0.00 0.00 31.02 5.28
67 68 2.422127 CAGAACTGTTTGTCAACCGGTT 59.578 45.455 15.86 15.86 33.37 4.44
68 69 2.681344 AGAACTGTTTGTCAACCGGTTC 59.319 45.455 19.24 21.25 40.80 3.62
69 70 1.385528 ACTGTTTGTCAACCGGTTCC 58.614 50.000 19.24 11.81 31.02 3.62
70 71 0.666374 CTGTTTGTCAACCGGTTCCC 59.334 55.000 19.24 11.41 31.02 3.97
71 72 0.752376 TGTTTGTCAACCGGTTCCCC 60.752 55.000 19.24 8.67 31.02 4.81
72 73 1.152715 TTTGTCAACCGGTTCCCCC 60.153 57.895 19.24 5.99 0.00 5.40
73 74 1.647334 TTTGTCAACCGGTTCCCCCT 61.647 55.000 19.24 0.00 0.00 4.79
74 75 1.647334 TTGTCAACCGGTTCCCCCTT 61.647 55.000 19.24 0.00 0.00 3.95
75 76 1.303074 GTCAACCGGTTCCCCCTTC 60.303 63.158 19.24 0.00 0.00 3.46
76 77 2.035155 CAACCGGTTCCCCCTTCC 59.965 66.667 19.24 0.00 0.00 3.46
77 78 3.262468 AACCGGTTCCCCCTTCCC 61.262 66.667 15.86 0.00 0.00 3.97
78 79 4.603097 ACCGGTTCCCCCTTCCCA 62.603 66.667 0.00 0.00 0.00 4.37
79 80 3.021263 CCGGTTCCCCCTTCCCAT 61.021 66.667 0.00 0.00 0.00 4.00
80 81 2.595655 CGGTTCCCCCTTCCCATC 59.404 66.667 0.00 0.00 0.00 3.51
81 82 2.305607 CGGTTCCCCCTTCCCATCA 61.306 63.158 0.00 0.00 0.00 3.07
82 83 1.645402 CGGTTCCCCCTTCCCATCAT 61.645 60.000 0.00 0.00 0.00 2.45
83 84 1.529744 GGTTCCCCCTTCCCATCATA 58.470 55.000 0.00 0.00 0.00 2.15
84 85 2.073776 GGTTCCCCCTTCCCATCATAT 58.926 52.381 0.00 0.00 0.00 1.78
85 86 2.041755 GGTTCCCCCTTCCCATCATATC 59.958 54.545 0.00 0.00 0.00 1.63
86 87 2.041755 GTTCCCCCTTCCCATCATATCC 59.958 54.545 0.00 0.00 0.00 2.59
87 88 1.002857 CCCCCTTCCCATCATATCCC 58.997 60.000 0.00 0.00 0.00 3.85
88 89 1.489679 CCCCCTTCCCATCATATCCCT 60.490 57.143 0.00 0.00 0.00 4.20
89 90 1.918957 CCCCTTCCCATCATATCCCTC 59.081 57.143 0.00 0.00 0.00 4.30
90 91 1.918957 CCCTTCCCATCATATCCCTCC 59.081 57.143 0.00 0.00 0.00 4.30
91 92 2.636005 CCTTCCCATCATATCCCTCCA 58.364 52.381 0.00 0.00 0.00 3.86
92 93 3.196300 CCTTCCCATCATATCCCTCCAT 58.804 50.000 0.00 0.00 0.00 3.41
93 94 3.595138 CCTTCCCATCATATCCCTCCATT 59.405 47.826 0.00 0.00 0.00 3.16
94 95 4.569228 CCTTCCCATCATATCCCTCCATTG 60.569 50.000 0.00 0.00 0.00 2.82
95 96 3.885669 TCCCATCATATCCCTCCATTGA 58.114 45.455 0.00 0.00 0.00 2.57
96 97 4.451309 TCCCATCATATCCCTCCATTGAT 58.549 43.478 0.00 0.00 0.00 2.57
97 98 4.859691 TCCCATCATATCCCTCCATTGATT 59.140 41.667 0.00 0.00 0.00 2.57
98 99 5.316722 TCCCATCATATCCCTCCATTGATTT 59.683 40.000 0.00 0.00 0.00 2.17
99 100 6.021030 CCCATCATATCCCTCCATTGATTTT 58.979 40.000 0.00 0.00 0.00 1.82
100 101 6.499350 CCCATCATATCCCTCCATTGATTTTT 59.501 38.462 0.00 0.00 0.00 1.94
124 125 6.931790 TTTCATCCATCTGAATTTTTCCCA 57.068 33.333 0.00 0.00 35.20 4.37
125 126 5.920193 TCATCCATCTGAATTTTTCCCAC 57.080 39.130 0.00 0.00 0.00 4.61
126 127 4.711355 TCATCCATCTGAATTTTTCCCACC 59.289 41.667 0.00 0.00 0.00 4.61
127 128 4.125124 TCCATCTGAATTTTTCCCACCA 57.875 40.909 0.00 0.00 0.00 4.17
128 129 3.831911 TCCATCTGAATTTTTCCCACCAC 59.168 43.478 0.00 0.00 0.00 4.16
129 130 3.367292 CCATCTGAATTTTTCCCACCACG 60.367 47.826 0.00 0.00 0.00 4.94
130 131 2.938838 TCTGAATTTTTCCCACCACGT 58.061 42.857 0.00 0.00 0.00 4.49
131 132 2.882137 TCTGAATTTTTCCCACCACGTC 59.118 45.455 0.00 0.00 0.00 4.34
132 133 2.621055 CTGAATTTTTCCCACCACGTCA 59.379 45.455 0.00 0.00 0.00 4.35
133 134 2.621055 TGAATTTTTCCCACCACGTCAG 59.379 45.455 0.00 0.00 0.00 3.51
134 135 2.649531 ATTTTTCCCACCACGTCAGA 57.350 45.000 0.00 0.00 0.00 3.27
135 136 2.649531 TTTTTCCCACCACGTCAGAT 57.350 45.000 0.00 0.00 0.00 2.90
136 137 3.773418 TTTTTCCCACCACGTCAGATA 57.227 42.857 0.00 0.00 0.00 1.98
137 138 3.992943 TTTTCCCACCACGTCAGATAT 57.007 42.857 0.00 0.00 0.00 1.63
138 139 5.423704 TTTTTCCCACCACGTCAGATATA 57.576 39.130 0.00 0.00 0.00 0.86
139 140 5.423704 TTTTCCCACCACGTCAGATATAA 57.576 39.130 0.00 0.00 0.00 0.98
140 141 4.395959 TTCCCACCACGTCAGATATAAC 57.604 45.455 0.00 0.00 0.00 1.89
141 142 2.696707 TCCCACCACGTCAGATATAACC 59.303 50.000 0.00 0.00 0.00 2.85
142 143 2.432874 CCCACCACGTCAGATATAACCA 59.567 50.000 0.00 0.00 0.00 3.67
143 144 3.454375 CCACCACGTCAGATATAACCAC 58.546 50.000 0.00 0.00 0.00 4.16
144 145 3.118920 CCACCACGTCAGATATAACCACA 60.119 47.826 0.00 0.00 0.00 4.17
145 146 3.863424 CACCACGTCAGATATAACCACAC 59.137 47.826 0.00 0.00 0.00 3.82
146 147 3.118884 ACCACGTCAGATATAACCACACC 60.119 47.826 0.00 0.00 0.00 4.16
147 148 3.132289 CCACGTCAGATATAACCACACCT 59.868 47.826 0.00 0.00 0.00 4.00
148 149 4.360563 CACGTCAGATATAACCACACCTC 58.639 47.826 0.00 0.00 0.00 3.85
149 150 4.021229 ACGTCAGATATAACCACACCTCA 58.979 43.478 0.00 0.00 0.00 3.86
150 151 4.142227 ACGTCAGATATAACCACACCTCAC 60.142 45.833 0.00 0.00 0.00 3.51
151 152 4.142249 CGTCAGATATAACCACACCTCACA 60.142 45.833 0.00 0.00 0.00 3.58
152 153 5.623596 CGTCAGATATAACCACACCTCACAA 60.624 44.000 0.00 0.00 0.00 3.33
153 154 5.581085 GTCAGATATAACCACACCTCACAAC 59.419 44.000 0.00 0.00 0.00 3.32
154 155 5.247337 TCAGATATAACCACACCTCACAACA 59.753 40.000 0.00 0.00 0.00 3.33
155 156 5.351465 CAGATATAACCACACCTCACAACAC 59.649 44.000 0.00 0.00 0.00 3.32
156 157 1.942677 TAACCACACCTCACAACACG 58.057 50.000 0.00 0.00 0.00 4.49
157 158 1.373590 AACCACACCTCACAACACGC 61.374 55.000 0.00 0.00 0.00 5.34
158 159 2.542907 CCACACCTCACAACACGCC 61.543 63.158 0.00 0.00 0.00 5.68
159 160 2.587753 ACACCTCACAACACGCCG 60.588 61.111 0.00 0.00 0.00 6.46
160 161 4.012895 CACCTCACAACACGCCGC 62.013 66.667 0.00 0.00 0.00 6.53
161 162 4.235762 ACCTCACAACACGCCGCT 62.236 61.111 0.00 0.00 0.00 5.52
162 163 3.414700 CCTCACAACACGCCGCTC 61.415 66.667 0.00 0.00 0.00 5.03
178 179 1.261619 CGCTCAATACGGGCAAGATTC 59.738 52.381 0.00 0.00 0.00 2.52
181 182 3.194861 CTCAATACGGGCAAGATTCGAA 58.805 45.455 0.00 0.00 0.00 3.71
224 225 1.618487 TCATCCTGTTGCAATGCACA 58.382 45.000 7.72 8.81 38.71 4.57
225 226 1.542472 TCATCCTGTTGCAATGCACAG 59.458 47.619 22.07 22.07 38.71 3.66
246 247 7.293745 CACAGGCATTATTCTTTCATCGATAC 58.706 38.462 0.00 0.00 0.00 2.24
258 259 8.322906 TCTTTCATCGATACAAAAAGACACAT 57.677 30.769 15.08 0.00 32.57 3.21
267 270 3.642848 ACAAAAAGACACATGGGCAGATT 59.357 39.130 0.00 0.00 0.00 2.40
303 306 3.680937 CCATCAAACCATGTCAATGCAAC 59.319 43.478 0.00 0.00 31.93 4.17
338 341 6.598850 TGCTTCAATGATGAACACTTAGCATA 59.401 34.615 0.00 0.00 40.59 3.14
339 342 7.283807 TGCTTCAATGATGAACACTTAGCATAT 59.716 33.333 0.00 0.00 40.59 1.78
427 430 7.448469 GTGATTGTTATCCTGCCTAATACCAAT 59.552 37.037 0.00 0.00 0.00 3.16
492 495 8.024146 CACGTATGCATTTACTTGTAAAATCG 57.976 34.615 3.54 9.96 0.00 3.34
571 575 4.875544 TTTGGCATCGTAGATAGCAAAC 57.124 40.909 0.00 0.00 45.12 2.93
579 583 6.653183 CATCGTAGATAGCAAACAATTGGAG 58.347 40.000 10.83 0.00 45.12 3.86
596 600 3.275143 TGGAGTATGCCAACATTTACGG 58.725 45.455 0.00 0.00 37.74 4.02
613 618 0.601558 CGGGGAGACTTTTCGACTCA 59.398 55.000 2.83 0.00 36.35 3.41
720 726 8.891928 CAATAGATATTACAACATTTTTCGGCG 58.108 33.333 0.00 0.00 0.00 6.46
740 746 2.143122 GCCGCCGAATTTATCATCTCA 58.857 47.619 0.00 0.00 0.00 3.27
751 757 4.617253 TTATCATCTCATAACCGGTGGG 57.383 45.455 8.52 0.00 40.11 4.61
807 813 4.214758 ACCAGCAACAACCTACGAATTAAC 59.785 41.667 0.00 0.00 0.00 2.01
808 814 4.454504 CCAGCAACAACCTACGAATTAACT 59.545 41.667 0.00 0.00 0.00 2.24
809 815 5.048991 CCAGCAACAACCTACGAATTAACTT 60.049 40.000 0.00 0.00 0.00 2.66
810 816 6.435428 CAGCAACAACCTACGAATTAACTTT 58.565 36.000 0.00 0.00 0.00 2.66
811 817 7.308109 CCAGCAACAACCTACGAATTAACTTTA 60.308 37.037 0.00 0.00 0.00 1.85
812 818 8.071368 CAGCAACAACCTACGAATTAACTTTAA 58.929 33.333 0.00 0.00 0.00 1.52
832 838 0.597637 AAATCGGCGCTGTATCCTCG 60.598 55.000 17.37 3.87 0.00 4.63
937 947 0.035056 CAAGAACCCAGCCCACTAGG 60.035 60.000 0.00 0.00 39.47 3.02
949 976 1.076632 CACTAGGCCTCTCCGTCCT 60.077 63.158 9.68 0.00 40.77 3.85
950 977 1.104577 CACTAGGCCTCTCCGTCCTC 61.105 65.000 9.68 0.00 40.77 3.71
951 978 1.529713 CTAGGCCTCTCCGTCCTCC 60.530 68.421 9.68 0.00 40.77 4.30
952 979 3.417167 TAGGCCTCTCCGTCCTCCG 62.417 68.421 9.68 0.00 40.77 4.63
953 980 4.816984 GGCCTCTCCGTCCTCCGA 62.817 72.222 0.00 0.00 39.56 4.55
1190 1220 3.483421 GGAGGAGCCTCTTCTACTACTC 58.517 54.545 15.64 0.00 42.38 2.59
1250 1280 2.232298 CTCTGGCTCAACGGAGGTCC 62.232 65.000 0.00 0.00 41.67 4.46
1303 2159 3.562108 TTCCTCCTCCACTCTACCTTT 57.438 47.619 0.00 0.00 0.00 3.11
1349 2253 4.030216 ACACAAACAACTTCCTCCCATTT 58.970 39.130 0.00 0.00 0.00 2.32
1430 3188 3.100671 GAGGTCACCATCTTCACTACCT 58.899 50.000 0.00 0.00 38.55 3.08
1440 3198 4.038271 TCTTCACTACCTCCTCCGTTTA 57.962 45.455 0.00 0.00 0.00 2.01
1444 3202 5.080969 TCACTACCTCCTCCGTTTATTTG 57.919 43.478 0.00 0.00 0.00 2.32
1445 3203 3.621715 CACTACCTCCTCCGTTTATTTGC 59.378 47.826 0.00 0.00 0.00 3.68
1447 3205 3.366052 ACCTCCTCCGTTTATTTGCAT 57.634 42.857 0.00 0.00 0.00 3.96
1634 3788 7.684062 ACATTTTGAAGTTTGACTTTGATCG 57.316 32.000 0.00 0.00 38.80 3.69
1762 3918 5.470777 CACCATTTTTGCTTTCATTCCATGT 59.529 36.000 0.00 0.00 0.00 3.21
1767 3923 5.402997 TTTGCTTTCATTCCATGTATGCA 57.597 34.783 0.00 0.00 38.36 3.96
1775 3931 2.557920 TCCATGTATGCACACACACA 57.442 45.000 0.00 0.00 37.54 3.72
1776 3932 2.150390 TCCATGTATGCACACACACAC 58.850 47.619 0.00 0.00 37.54 3.82
1777 3933 1.878734 CCATGTATGCACACACACACA 59.121 47.619 0.00 0.00 37.54 3.72
1778 3934 2.350676 CCATGTATGCACACACACACAC 60.351 50.000 0.00 0.00 37.54 3.82
1779 3935 2.029838 TGTATGCACACACACACACA 57.970 45.000 0.00 0.00 0.00 3.72
1780 3936 1.668237 TGTATGCACACACACACACAC 59.332 47.619 0.00 0.00 0.00 3.82
1781 3937 1.668237 GTATGCACACACACACACACA 59.332 47.619 0.00 0.00 0.00 3.72
1782 3938 0.451383 ATGCACACACACACACACAC 59.549 50.000 0.00 0.00 0.00 3.82
1783 3939 0.886490 TGCACACACACACACACACA 60.886 50.000 0.00 0.00 0.00 3.72
1784 3940 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1785 3941 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1786 3942 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1787 3943 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1788 3944 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1789 3945 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1790 3946 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1791 3947 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1792 3948 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1793 3949 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1794 3950 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1795 3951 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1796 3952 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1797 3953 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1798 3954 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1799 3955 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1800 3956 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1801 3957 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1802 3958 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1803 3959 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1804 3960 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1805 3961 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1806 3962 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1807 3963 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1808 3964 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1809 3965 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2000 4163 3.116531 GGCGCGTTTACGGAGCTT 61.117 61.111 8.43 0.00 40.23 3.74
2115 4280 6.536582 CGATCACATCTTACAGGTGAAAGAAT 59.463 38.462 0.00 0.00 43.93 2.40
2317 4485 3.433173 GGATACCGGTTGTTAGCCTGAAT 60.433 47.826 15.04 0.00 0.00 2.57
2319 4487 3.706600 ACCGGTTGTTAGCCTGAATAA 57.293 42.857 0.00 0.00 0.00 1.40
2328 4496 5.109210 TGTTAGCCTGAATAAGTCGATGTG 58.891 41.667 0.00 0.00 0.00 3.21
2347 4515 6.090358 CGATGTGACCGTATGTTTCTTTAACT 59.910 38.462 0.00 0.00 37.64 2.24
2348 4516 7.274033 CGATGTGACCGTATGTTTCTTTAACTA 59.726 37.037 0.00 0.00 37.64 2.24
2349 4517 9.095065 GATGTGACCGTATGTTTCTTTAACTAT 57.905 33.333 0.00 0.00 37.64 2.12
2420 4588 2.496470 AGTTCCCGGAGTACAGATCAAC 59.504 50.000 0.73 0.00 0.00 3.18
2433 4601 8.485976 AGTACAGATCAACAAGCTTATTTCTC 57.514 34.615 0.00 0.00 0.00 2.87
2462 4630 0.824759 AGCTACGCAGGTTAGGAAGG 59.175 55.000 0.00 0.00 0.00 3.46
2478 4646 7.549842 GGTTAGGAAGGATTTCAAGTTCTACTC 59.450 40.741 0.00 0.00 34.90 2.59
2677 4855 8.424918 GTCCTCTCTTGAATCAACTATTATGGA 58.575 37.037 0.00 0.00 0.00 3.41
2694 4872 2.450476 TGGAACGGAGGGAGTACTTAC 58.550 52.381 0.00 0.00 0.00 2.34
2695 4873 2.042162 TGGAACGGAGGGAGTACTTACT 59.958 50.000 0.00 0.00 39.71 2.24
2696 4874 3.266772 TGGAACGGAGGGAGTACTTACTA 59.733 47.826 0.00 0.00 36.50 1.82
2703 4963 5.526846 CGGAGGGAGTACTTACTAGTTACTG 59.473 48.000 9.89 0.00 36.50 2.74
2783 5043 1.607148 TGACAGGTATATCCGCGTGAG 59.393 52.381 4.92 0.00 41.99 3.51
3065 5338 9.788960 GATATTTTACACCAGAACCTTTTGATC 57.211 33.333 0.00 0.00 0.00 2.92
3083 5356 5.175090 TGATCGCTCTTATGTGACTAGTG 57.825 43.478 0.00 0.00 0.00 2.74
3148 5421 6.262944 GGATGTTTGCATGTCATATGAAGGTA 59.737 38.462 7.07 0.00 35.07 3.08
3274 5704 6.092259 GCTACTTCTGTCAAATACATCCGTTT 59.908 38.462 0.00 0.00 37.50 3.60
3276 5706 5.181245 ACTTCTGTCAAATACATCCGTTTGG 59.819 40.000 0.00 0.00 37.50 3.28
3278 5708 3.149981 TGTCAAATACATCCGTTTGGCA 58.850 40.909 1.46 1.46 44.76 4.92
3279 5709 3.190327 TGTCAAATACATCCGTTTGGCAG 59.810 43.478 1.46 0.00 42.86 4.85
3282 5712 4.279671 TCAAATACATCCGTTTGGCAGTTT 59.720 37.500 0.00 0.00 36.30 2.66
3283 5713 4.434713 AATACATCCGTTTGGCAGTTTC 57.565 40.909 0.00 0.00 34.14 2.78
3284 5714 1.686355 ACATCCGTTTGGCAGTTTCA 58.314 45.000 0.00 0.00 34.14 2.69
3285 5715 1.608590 ACATCCGTTTGGCAGTTTCAG 59.391 47.619 0.00 0.00 34.14 3.02
3286 5716 1.608590 CATCCGTTTGGCAGTTTCAGT 59.391 47.619 0.00 0.00 34.14 3.41
3287 5717 2.623878 TCCGTTTGGCAGTTTCAGTA 57.376 45.000 0.00 0.00 34.14 2.74
3339 5773 6.238759 GGAGTAAACAAACTGCTCATCTTTGT 60.239 38.462 0.00 0.00 39.30 2.83
3348 5782 6.942532 ACTGCTCATCTTTGTAACTCAAAA 57.057 33.333 0.00 0.00 44.08 2.44
3357 5791 6.980593 TCTTTGTAACTCAAAATCACATGGG 58.019 36.000 0.00 0.00 44.08 4.00
3411 5845 3.404899 TCACCGGAAAGGATGTTTACAC 58.595 45.455 9.46 0.00 45.00 2.90
3551 6006 2.063156 TCGTTCCATGTGCAATTTGC 57.937 45.000 14.49 14.49 45.29 3.68
3574 6029 9.715123 TTGCTATGACAATATGAATTAACGTTG 57.285 29.630 11.99 0.00 0.00 4.10
3609 6064 2.743928 CTGTCGTGCCCCTCTTGC 60.744 66.667 0.00 0.00 0.00 4.01
3699 6154 1.302993 TTCCGCAAAGGCCAGGTAC 60.303 57.895 5.01 0.00 40.77 3.34
3703 6158 0.036765 CGCAAAGGCCAGGTACACTA 60.037 55.000 5.01 0.00 36.38 2.74
3752 6207 6.977213 TGCAGATGTCCAATTTGATGATATG 58.023 36.000 0.00 0.00 0.00 1.78
3835 6290 4.219143 CGAGTACGGTAATATGCTCACA 57.781 45.455 0.00 0.00 35.72 3.58
3995 6515 6.541641 ACAAAAGCAGCTGGATATAGAAAGAG 59.458 38.462 17.12 0.00 0.00 2.85
4091 6611 1.601663 GCATGCTAGCGAGTAGGAGTG 60.602 57.143 11.37 0.00 31.67 3.51
4111 6637 7.443575 AGGAGTGTGATCTTTATCATATTGCAC 59.556 37.037 0.00 0.00 43.87 4.57
4132 6658 1.352352 CCCTGGAAGTCTGGAACACAT 59.648 52.381 0.00 0.00 36.68 3.21
4196 6723 4.699626 GGGGGCACTTGCAAATTG 57.300 55.556 0.00 1.67 44.36 2.32
4197 6724 1.754107 GGGGGCACTTGCAAATTGT 59.246 52.632 0.00 0.00 44.36 2.71
4198 6725 0.972883 GGGGGCACTTGCAAATTGTA 59.027 50.000 0.00 0.00 44.36 2.41
4199 6726 1.337728 GGGGGCACTTGCAAATTGTAC 60.338 52.381 0.00 0.00 44.36 2.90
4200 6727 1.342819 GGGGCACTTGCAAATTGTACA 59.657 47.619 0.00 0.00 44.36 2.90
4201 6728 2.224161 GGGGCACTTGCAAATTGTACAA 60.224 45.455 11.41 11.41 44.36 2.41
4202 6729 3.059166 GGGCACTTGCAAATTGTACAAG 58.941 45.455 14.65 10.42 44.98 3.16
4203 6730 2.476241 GGCACTTGCAAATTGTACAAGC 59.524 45.455 14.65 12.35 43.63 4.01
4206 6733 4.211794 GCACTTGCAAATTGTACAAGCAAT 59.788 37.500 25.15 16.31 43.63 3.56
4214 6741 6.129009 GCAAATTGTACAAGCAATTCTGTCTG 60.129 38.462 14.65 0.15 45.17 3.51
4267 6795 6.988622 TGTTAAAAAGGTTCGTCAAGAGAA 57.011 33.333 0.00 0.00 0.00 2.87
4297 6828 6.535540 TGCCAGTTAGGTGACATTTACTTTA 58.464 36.000 0.00 0.00 40.61 1.85
4340 6874 5.711506 TGGTATGATTTGCTGATCTTGTTGT 59.288 36.000 0.00 0.00 0.00 3.32
4341 6875 6.209192 TGGTATGATTTGCTGATCTTGTTGTT 59.791 34.615 0.00 0.00 0.00 2.83
4342 6876 6.749118 GGTATGATTTGCTGATCTTGTTGTTC 59.251 38.462 0.00 0.00 0.00 3.18
4365 6899 6.279882 TCAAAAGGCCAAACTTATTCAACAG 58.720 36.000 5.01 0.00 0.00 3.16
4432 6970 1.202818 ACAAACTTCTGTCCAGGGAGC 60.203 52.381 0.00 0.00 0.00 4.70
4450 6988 3.055747 GGAGCACTAAAGTTACCTGCTCT 60.056 47.826 19.94 0.00 44.48 4.09
4453 6991 4.040461 AGCACTAAAGTTACCTGCTCTCAA 59.960 41.667 0.00 0.00 0.00 3.02
4454 6992 4.755123 GCACTAAAGTTACCTGCTCTCAAA 59.245 41.667 0.00 0.00 0.00 2.69
4455 6993 5.412904 GCACTAAAGTTACCTGCTCTCAAAT 59.587 40.000 0.00 0.00 0.00 2.32
4509 7079 8.925700 GGGTTATTTTCTAAACAAATTCAGCTG 58.074 33.333 7.63 7.63 0.00 4.24
4546 7117 1.876156 CACAAGGTCCAGAAAGCAGAC 59.124 52.381 0.00 0.00 0.00 3.51
4592 7166 5.620738 AGCTAATCTGCATAGAAGGACAA 57.379 39.130 0.00 0.00 36.32 3.18
4617 7747 6.973229 AAGAATACATTGCAATGCTTTTCC 57.027 33.333 33.94 19.79 40.04 3.13
4659 7789 2.550978 AGGTGTCACGTTTGTTCTCAG 58.449 47.619 0.00 0.00 0.00 3.35
4687 7817 8.464770 TGCTATCTTAATTTGCACAAAACATC 57.535 30.769 0.00 0.00 33.56 3.06
4699 7829 3.486841 CACAAAACATCGCACTGGAAAAG 59.513 43.478 0.00 0.00 0.00 2.27
4752 8694 1.933115 GCCAAGTGGGGTTGTATGCG 61.933 60.000 0.00 0.00 37.04 4.73
4753 8695 1.506262 CAAGTGGGGTTGTATGCGC 59.494 57.895 0.00 0.00 0.00 6.09
4763 8705 3.312828 GGTTGTATGCGCACAAATGAAA 58.687 40.909 14.90 0.00 39.98 2.69
4810 8755 0.250295 CTCCTTCAAACGTGCCCTGA 60.250 55.000 0.00 0.00 0.00 3.86
4828 8773 1.144708 TGATCCTGGTTGTGGCTTCAA 59.855 47.619 0.00 0.00 0.00 2.69
4832 8777 1.152567 TGGTTGTGGCTTCAAGGGG 60.153 57.895 0.00 0.00 0.00 4.79
4883 8828 1.286570 TGCCGATTGCTTGCACTTG 59.713 52.632 0.00 0.00 42.00 3.16
4912 8857 4.613622 CGGCCAGTCATTTGAAGTAAAGTG 60.614 45.833 2.24 0.00 0.00 3.16
4930 8875 3.171348 GGAGGTGTCCCTGCCTTT 58.829 61.111 0.00 0.00 43.12 3.11
4931 8876 1.303643 GGAGGTGTCCCTGCCTTTG 60.304 63.158 0.00 0.00 43.12 2.77
4932 8877 1.456287 GAGGTGTCCCTGCCTTTGT 59.544 57.895 0.00 0.00 42.86 2.83
4933 8878 0.690762 GAGGTGTCCCTGCCTTTGTA 59.309 55.000 0.00 0.00 42.86 2.41
4934 8879 0.693049 AGGTGTCCCTGCCTTTGTAG 59.307 55.000 0.00 0.00 40.58 2.74
4935 8880 0.400594 GGTGTCCCTGCCTTTGTAGT 59.599 55.000 0.00 0.00 0.00 2.73
4936 8881 1.202891 GGTGTCCCTGCCTTTGTAGTT 60.203 52.381 0.00 0.00 0.00 2.24
4937 8882 2.152016 GTGTCCCTGCCTTTGTAGTTC 58.848 52.381 0.00 0.00 0.00 3.01
4938 8883 2.054799 TGTCCCTGCCTTTGTAGTTCT 58.945 47.619 0.00 0.00 0.00 3.01
4939 8884 2.441750 TGTCCCTGCCTTTGTAGTTCTT 59.558 45.455 0.00 0.00 0.00 2.52
4940 8885 3.075148 GTCCCTGCCTTTGTAGTTCTTC 58.925 50.000 0.00 0.00 0.00 2.87
4941 8886 2.979678 TCCCTGCCTTTGTAGTTCTTCT 59.020 45.455 0.00 0.00 0.00 2.85
4942 8887 3.394606 TCCCTGCCTTTGTAGTTCTTCTT 59.605 43.478 0.00 0.00 0.00 2.52
4943 8888 3.503748 CCCTGCCTTTGTAGTTCTTCTTG 59.496 47.826 0.00 0.00 0.00 3.02
4944 8889 4.137543 CCTGCCTTTGTAGTTCTTCTTGT 58.862 43.478 0.00 0.00 0.00 3.16
4945 8890 5.305585 CCTGCCTTTGTAGTTCTTCTTGTA 58.694 41.667 0.00 0.00 0.00 2.41
4946 8891 5.409826 CCTGCCTTTGTAGTTCTTCTTGTAG 59.590 44.000 0.00 0.00 0.00 2.74
4947 8892 6.169557 TGCCTTTGTAGTTCTTCTTGTAGA 57.830 37.500 0.00 0.00 0.00 2.59
4948 8893 6.223852 TGCCTTTGTAGTTCTTCTTGTAGAG 58.776 40.000 0.00 0.00 0.00 2.43
4949 8894 5.120986 GCCTTTGTAGTTCTTCTTGTAGAGC 59.879 44.000 0.00 0.00 0.00 4.09
4950 8895 5.639931 CCTTTGTAGTTCTTCTTGTAGAGCC 59.360 44.000 0.00 0.00 0.00 4.70
4951 8896 4.803098 TGTAGTTCTTCTTGTAGAGCCC 57.197 45.455 0.00 0.00 0.00 5.19
4952 8897 3.514309 TGTAGTTCTTCTTGTAGAGCCCC 59.486 47.826 0.00 0.00 0.00 5.80
4953 8898 2.909217 AGTTCTTCTTGTAGAGCCCCT 58.091 47.619 0.00 0.00 0.00 4.79
4954 8899 2.569404 AGTTCTTCTTGTAGAGCCCCTG 59.431 50.000 0.00 0.00 0.00 4.45
4955 8900 2.567615 GTTCTTCTTGTAGAGCCCCTGA 59.432 50.000 0.00 0.00 0.00 3.86
4956 8901 2.902608 TCTTCTTGTAGAGCCCCTGAA 58.097 47.619 0.00 0.00 0.00 3.02
4957 8902 2.567615 TCTTCTTGTAGAGCCCCTGAAC 59.432 50.000 0.00 0.00 0.00 3.18
4958 8903 2.024176 TCTTGTAGAGCCCCTGAACA 57.976 50.000 0.00 0.00 0.00 3.18
4959 8904 2.334977 TCTTGTAGAGCCCCTGAACAA 58.665 47.619 0.00 0.00 0.00 2.83
4960 8905 2.038557 TCTTGTAGAGCCCCTGAACAAC 59.961 50.000 0.00 0.00 0.00 3.32
4961 8906 1.429930 TGTAGAGCCCCTGAACAACA 58.570 50.000 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 9.952188 GACAGAAAAAGAAATGCTACTTACTTT 57.048 29.630 0.00 0.00 0.00 2.66
17 18 9.120538 TGACAGAAAAAGAAATGCTACTTACTT 57.879 29.630 0.00 0.00 0.00 2.24
18 19 8.677148 TGACAGAAAAAGAAATGCTACTTACT 57.323 30.769 0.00 0.00 0.00 2.24
19 20 8.017946 CCTGACAGAAAAAGAAATGCTACTTAC 58.982 37.037 3.32 0.00 0.00 2.34
20 21 7.308589 GCCTGACAGAAAAAGAAATGCTACTTA 60.309 37.037 3.32 0.00 0.00 2.24
21 22 6.515696 GCCTGACAGAAAAAGAAATGCTACTT 60.516 38.462 3.32 0.00 0.00 2.24
22 23 5.048434 GCCTGACAGAAAAAGAAATGCTACT 60.048 40.000 3.32 0.00 0.00 2.57
23 24 5.157067 GCCTGACAGAAAAAGAAATGCTAC 58.843 41.667 3.32 0.00 0.00 3.58
24 25 4.826733 TGCCTGACAGAAAAAGAAATGCTA 59.173 37.500 3.32 0.00 0.00 3.49
25 26 3.638160 TGCCTGACAGAAAAAGAAATGCT 59.362 39.130 3.32 0.00 0.00 3.79
26 27 3.981211 TGCCTGACAGAAAAAGAAATGC 58.019 40.909 3.32 0.00 0.00 3.56
38 39 7.651364 GTTGACAAACAGTTCTGCCTGACAG 62.651 48.000 0.00 0.00 40.85 3.51
39 40 2.288666 GACAAACAGTTCTGCCTGACA 58.711 47.619 0.00 0.00 36.30 3.58
40 41 2.288666 TGACAAACAGTTCTGCCTGAC 58.711 47.619 0.00 0.00 36.30 3.51
41 42 2.682856 GTTGACAAACAGTTCTGCCTGA 59.317 45.455 0.00 0.00 36.24 3.86
42 43 2.223572 GGTTGACAAACAGTTCTGCCTG 60.224 50.000 0.00 0.74 38.10 4.85
43 44 2.024414 GGTTGACAAACAGTTCTGCCT 58.976 47.619 0.00 0.00 38.10 4.75
44 45 1.268539 CGGTTGACAAACAGTTCTGCC 60.269 52.381 3.73 0.00 38.10 4.85
45 46 1.268539 CCGGTTGACAAACAGTTCTGC 60.269 52.381 3.73 0.00 38.10 4.26
46 47 2.014128 ACCGGTTGACAAACAGTTCTG 58.986 47.619 0.00 0.00 38.10 3.02
47 48 2.413310 ACCGGTTGACAAACAGTTCT 57.587 45.000 0.00 0.00 38.10 3.01
48 49 2.223409 GGAACCGGTTGACAAACAGTTC 60.223 50.000 27.87 19.74 43.50 3.01
49 50 1.746787 GGAACCGGTTGACAAACAGTT 59.253 47.619 27.87 4.49 38.10 3.16
50 51 1.385528 GGAACCGGTTGACAAACAGT 58.614 50.000 27.87 0.00 38.10 3.55
51 52 0.666374 GGGAACCGGTTGACAAACAG 59.334 55.000 27.87 0.00 40.86 3.16
52 53 2.796500 GGGAACCGGTTGACAAACA 58.204 52.632 27.87 0.00 40.86 2.83
65 66 2.041755 GGATATGATGGGAAGGGGGAAC 59.958 54.545 0.00 0.00 0.00 3.62
66 67 2.358258 GGATATGATGGGAAGGGGGAA 58.642 52.381 0.00 0.00 0.00 3.97
67 68 1.488892 GGGATATGATGGGAAGGGGGA 60.489 57.143 0.00 0.00 0.00 4.81
68 69 1.002857 GGGATATGATGGGAAGGGGG 58.997 60.000 0.00 0.00 0.00 5.40
69 70 1.918957 GAGGGATATGATGGGAAGGGG 59.081 57.143 0.00 0.00 0.00 4.79
70 71 1.918957 GGAGGGATATGATGGGAAGGG 59.081 57.143 0.00 0.00 0.00 3.95
71 72 2.636005 TGGAGGGATATGATGGGAAGG 58.364 52.381 0.00 0.00 0.00 3.46
72 73 4.290459 TCAATGGAGGGATATGATGGGAAG 59.710 45.833 0.00 0.00 0.00 3.46
73 74 4.250329 TCAATGGAGGGATATGATGGGAA 58.750 43.478 0.00 0.00 0.00 3.97
74 75 3.885669 TCAATGGAGGGATATGATGGGA 58.114 45.455 0.00 0.00 0.00 4.37
75 76 4.875578 ATCAATGGAGGGATATGATGGG 57.124 45.455 0.00 0.00 30.00 4.00
76 77 7.549147 AAAAATCAATGGAGGGATATGATGG 57.451 36.000 0.00 0.00 31.49 3.51
99 100 7.661027 GTGGGAAAAATTCAGATGGATGAAAAA 59.339 33.333 0.00 0.00 42.21 1.94
100 101 7.160726 GTGGGAAAAATTCAGATGGATGAAAA 58.839 34.615 0.00 0.00 42.21 2.29
101 102 6.295802 GGTGGGAAAAATTCAGATGGATGAAA 60.296 38.462 0.00 0.00 42.21 2.69
102 103 5.187576 GGTGGGAAAAATTCAGATGGATGAA 59.812 40.000 0.00 0.00 43.04 2.57
103 104 4.711355 GGTGGGAAAAATTCAGATGGATGA 59.289 41.667 0.00 0.00 0.00 2.92
104 105 4.467082 TGGTGGGAAAAATTCAGATGGATG 59.533 41.667 0.00 0.00 0.00 3.51
105 106 4.467438 GTGGTGGGAAAAATTCAGATGGAT 59.533 41.667 0.00 0.00 0.00 3.41
106 107 3.831911 GTGGTGGGAAAAATTCAGATGGA 59.168 43.478 0.00 0.00 0.00 3.41
107 108 3.367292 CGTGGTGGGAAAAATTCAGATGG 60.367 47.826 0.00 0.00 0.00 3.51
108 109 3.255642 ACGTGGTGGGAAAAATTCAGATG 59.744 43.478 0.00 0.00 0.00 2.90
109 110 3.496331 ACGTGGTGGGAAAAATTCAGAT 58.504 40.909 0.00 0.00 0.00 2.90
110 111 2.882137 GACGTGGTGGGAAAAATTCAGA 59.118 45.455 0.00 0.00 0.00 3.27
111 112 2.621055 TGACGTGGTGGGAAAAATTCAG 59.379 45.455 0.00 0.00 0.00 3.02
112 113 2.621055 CTGACGTGGTGGGAAAAATTCA 59.379 45.455 0.00 0.00 0.00 2.57
113 114 2.882137 TCTGACGTGGTGGGAAAAATTC 59.118 45.455 0.00 0.00 0.00 2.17
114 115 2.938838 TCTGACGTGGTGGGAAAAATT 58.061 42.857 0.00 0.00 0.00 1.82
115 116 2.649531 TCTGACGTGGTGGGAAAAAT 57.350 45.000 0.00 0.00 0.00 1.82
116 117 2.649531 ATCTGACGTGGTGGGAAAAA 57.350 45.000 0.00 0.00 0.00 1.94
117 118 3.992943 ATATCTGACGTGGTGGGAAAA 57.007 42.857 0.00 0.00 0.00 2.29
118 119 4.383335 GGTTATATCTGACGTGGTGGGAAA 60.383 45.833 0.00 0.00 0.00 3.13
119 120 3.133362 GGTTATATCTGACGTGGTGGGAA 59.867 47.826 0.00 0.00 0.00 3.97
120 121 2.696707 GGTTATATCTGACGTGGTGGGA 59.303 50.000 0.00 0.00 0.00 4.37
121 122 2.432874 TGGTTATATCTGACGTGGTGGG 59.567 50.000 0.00 0.00 0.00 4.61
122 123 3.118920 TGTGGTTATATCTGACGTGGTGG 60.119 47.826 0.00 0.00 0.00 4.61
123 124 3.863424 GTGTGGTTATATCTGACGTGGTG 59.137 47.826 0.00 0.00 0.00 4.17
124 125 3.118884 GGTGTGGTTATATCTGACGTGGT 60.119 47.826 0.00 0.00 0.00 4.16
125 126 3.132289 AGGTGTGGTTATATCTGACGTGG 59.868 47.826 0.00 0.00 0.00 4.94
126 127 4.142249 TGAGGTGTGGTTATATCTGACGTG 60.142 45.833 0.00 0.00 0.00 4.49
127 128 4.021229 TGAGGTGTGGTTATATCTGACGT 58.979 43.478 0.00 0.00 0.00 4.34
128 129 4.142249 TGTGAGGTGTGGTTATATCTGACG 60.142 45.833 0.00 0.00 0.00 4.35
129 130 5.339008 TGTGAGGTGTGGTTATATCTGAC 57.661 43.478 0.00 0.00 0.00 3.51
130 131 5.247337 TGTTGTGAGGTGTGGTTATATCTGA 59.753 40.000 0.00 0.00 0.00 3.27
131 132 5.351465 GTGTTGTGAGGTGTGGTTATATCTG 59.649 44.000 0.00 0.00 0.00 2.90
132 133 5.488341 GTGTTGTGAGGTGTGGTTATATCT 58.512 41.667 0.00 0.00 0.00 1.98
133 134 4.328983 CGTGTTGTGAGGTGTGGTTATATC 59.671 45.833 0.00 0.00 0.00 1.63
134 135 4.250464 CGTGTTGTGAGGTGTGGTTATAT 58.750 43.478 0.00 0.00 0.00 0.86
135 136 3.655486 CGTGTTGTGAGGTGTGGTTATA 58.345 45.455 0.00 0.00 0.00 0.98
136 137 2.489971 CGTGTTGTGAGGTGTGGTTAT 58.510 47.619 0.00 0.00 0.00 1.89
137 138 1.942677 CGTGTTGTGAGGTGTGGTTA 58.057 50.000 0.00 0.00 0.00 2.85
138 139 1.373590 GCGTGTTGTGAGGTGTGGTT 61.374 55.000 0.00 0.00 0.00 3.67
139 140 1.817941 GCGTGTTGTGAGGTGTGGT 60.818 57.895 0.00 0.00 0.00 4.16
140 141 2.542907 GGCGTGTTGTGAGGTGTGG 61.543 63.158 0.00 0.00 0.00 4.17
141 142 2.881266 CGGCGTGTTGTGAGGTGTG 61.881 63.158 0.00 0.00 0.00 3.82
142 143 2.587753 CGGCGTGTTGTGAGGTGT 60.588 61.111 0.00 0.00 0.00 4.16
143 144 4.012895 GCGGCGTGTTGTGAGGTG 62.013 66.667 9.37 0.00 0.00 4.00
144 145 4.235762 AGCGGCGTGTTGTGAGGT 62.236 61.111 9.37 0.00 0.00 3.85
145 146 3.414700 GAGCGGCGTGTTGTGAGG 61.415 66.667 9.37 0.00 0.00 3.86
146 147 1.568612 ATTGAGCGGCGTGTTGTGAG 61.569 55.000 9.37 0.00 0.00 3.51
147 148 0.319986 TATTGAGCGGCGTGTTGTGA 60.320 50.000 9.37 0.00 0.00 3.58
148 149 0.179225 GTATTGAGCGGCGTGTTGTG 60.179 55.000 9.37 0.00 0.00 3.33
149 150 1.623081 CGTATTGAGCGGCGTGTTGT 61.623 55.000 9.37 0.00 0.00 3.32
150 151 1.058748 CGTATTGAGCGGCGTGTTG 59.941 57.895 9.37 0.00 0.00 3.33
151 152 2.098233 CCGTATTGAGCGGCGTGTT 61.098 57.895 9.37 0.00 42.82 3.32
152 153 2.508439 CCGTATTGAGCGGCGTGT 60.508 61.111 9.37 0.00 42.82 4.49
158 159 1.261619 GAATCTTGCCCGTATTGAGCG 59.738 52.381 0.00 0.00 0.00 5.03
159 160 1.261619 CGAATCTTGCCCGTATTGAGC 59.738 52.381 0.00 0.00 0.00 4.26
160 161 2.821546 TCGAATCTTGCCCGTATTGAG 58.178 47.619 0.00 0.00 0.00 3.02
161 162 2.971660 TCGAATCTTGCCCGTATTGA 57.028 45.000 0.00 0.00 0.00 2.57
162 163 4.349663 TTTTCGAATCTTGCCCGTATTG 57.650 40.909 0.00 0.00 0.00 1.90
206 207 1.990799 CTGTGCATTGCAACAGGATG 58.009 50.000 22.70 0.00 41.47 3.51
224 225 8.450578 TTTGTATCGATGAAAGAATAATGCCT 57.549 30.769 8.54 0.00 0.00 4.75
225 226 9.515020 TTTTTGTATCGATGAAAGAATAATGCC 57.485 29.630 8.54 0.00 0.00 4.40
233 234 7.722795 TGTGTCTTTTTGTATCGATGAAAGA 57.277 32.000 8.54 14.20 34.86 2.52
246 247 3.947910 ATCTGCCCATGTGTCTTTTTG 57.052 42.857 0.00 0.00 0.00 2.44
267 270 2.488204 TGATGGGCGAGATTTGTTGA 57.512 45.000 0.00 0.00 0.00 3.18
303 306 7.041848 TGTTCATCATTGAAGCAATATAGGTCG 60.042 37.037 0.00 0.00 42.41 4.79
338 341 9.398170 GATGTGATATTAATTGCACGCTAAAAT 57.602 29.630 12.74 3.61 34.12 1.82
339 342 8.401709 TGATGTGATATTAATTGCACGCTAAAA 58.598 29.630 12.74 0.00 34.12 1.52
564 568 4.339748 TGGCATACTCCAATTGTTTGCTA 58.660 39.130 4.43 0.00 40.47 3.49
571 575 5.743398 CGTAAATGTTGGCATACTCCAATTG 59.257 40.000 0.00 0.00 46.64 2.32
579 583 2.616842 CTCCCCGTAAATGTTGGCATAC 59.383 50.000 0.00 0.00 34.39 2.39
596 600 4.814771 TCTTTTTGAGTCGAAAAGTCTCCC 59.185 41.667 31.34 0.00 42.36 4.30
704 710 0.110147 CGGCGCCGAAAAATGTTGTA 60.110 50.000 44.86 0.00 42.83 2.41
717 723 1.852067 ATGATAAATTCGGCGGCGCC 61.852 55.000 39.60 39.60 46.75 6.53
720 726 2.143122 TGAGATGATAAATTCGGCGGC 58.857 47.619 7.21 0.00 0.00 6.53
740 746 3.074836 TCCTTTTCTTTCCCACCGGTTAT 59.925 43.478 2.97 0.00 0.00 1.89
751 757 7.216494 TGGATTCCATTGTTTCCTTTTCTTTC 58.784 34.615 0.00 0.00 0.00 2.62
807 813 4.035208 AGGATACAGCGCCGATTTTTAAAG 59.965 41.667 2.29 0.00 41.41 1.85
808 814 3.942748 AGGATACAGCGCCGATTTTTAAA 59.057 39.130 2.29 0.00 41.41 1.52
809 815 3.537580 AGGATACAGCGCCGATTTTTAA 58.462 40.909 2.29 0.00 41.41 1.52
810 816 3.128349 GAGGATACAGCGCCGATTTTTA 58.872 45.455 2.29 0.00 41.41 1.52
811 817 1.940613 GAGGATACAGCGCCGATTTTT 59.059 47.619 2.29 0.00 41.41 1.94
812 818 1.583054 GAGGATACAGCGCCGATTTT 58.417 50.000 2.29 0.00 41.41 1.82
937 947 2.519780 ATCGGAGGACGGAGAGGC 60.520 66.667 0.00 0.00 44.45 4.70
945 971 1.152922 AGACGAGGGATCGGAGGAC 60.153 63.158 2.46 0.00 37.45 3.85
949 976 1.148723 GGAGAGACGAGGGATCGGA 59.851 63.158 2.46 0.00 37.45 4.55
950 977 1.899534 GGGAGAGACGAGGGATCGG 60.900 68.421 2.46 0.00 37.45 4.18
951 978 0.752009 TTGGGAGAGACGAGGGATCG 60.752 60.000 0.00 0.00 39.31 3.69
952 979 1.710816 ATTGGGAGAGACGAGGGATC 58.289 55.000 0.00 0.00 0.00 3.36
953 980 2.043227 GAATTGGGAGAGACGAGGGAT 58.957 52.381 0.00 0.00 0.00 3.85
1250 1280 6.060788 AGGAAATGAGTAGGTACTAGGTACG 58.939 44.000 0.00 0.00 44.14 3.67
1303 2159 1.939934 CAGTTCAGGACGTGCAAGAAA 59.060 47.619 10.52 0.00 0.00 2.52
1349 2253 0.980423 TGTGGATCGGATGGTCAACA 59.020 50.000 0.00 0.00 0.00 3.33
1701 3857 5.930837 AAAATTCTCAAGGACCACAACAA 57.069 34.783 0.00 0.00 0.00 2.83
1762 3918 1.668237 GTGTGTGTGTGTGTGTGCATA 59.332 47.619 0.00 0.00 0.00 3.14
1767 3923 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1775 3931 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1776 3932 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1777 3933 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1778 3934 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1779 3935 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1780 3936 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1781 3937 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1782 3938 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1783 3939 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1784 3940 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1785 3941 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1786 3942 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1787 3943 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1788 3944 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1789 3945 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1790 3946 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1791 3947 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1792 3948 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1793 3949 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1794 3950 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1795 3951 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1796 3952 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1797 3953 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1798 3954 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1799 3955 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1800 3956 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1801 3957 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1802 3958 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1803 3959 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
1804 3960 2.695613 TTTGTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
1805 3961 2.881513 TCTTTTGTGTGTGTGTGTGTGT 59.118 40.909 0.00 0.00 0.00 3.72
1806 3962 3.550950 TCTTTTGTGTGTGTGTGTGTG 57.449 42.857 0.00 0.00 0.00 3.82
1807 3963 4.022416 ACAATCTTTTGTGTGTGTGTGTGT 60.022 37.500 0.00 0.00 44.36 3.72
1808 3964 4.484236 ACAATCTTTTGTGTGTGTGTGTG 58.516 39.130 0.00 0.00 44.36 3.82
1809 3965 4.782019 ACAATCTTTTGTGTGTGTGTGT 57.218 36.364 0.00 0.00 44.36 3.72
2000 4163 1.217689 CCTCTGGGATAAAATGGGCCA 59.782 52.381 9.61 9.61 33.58 5.36
2150 4318 8.398665 GGACACTGCGAATTTATTTAGAAAGAT 58.601 33.333 0.00 0.00 0.00 2.40
2294 4462 1.208535 CAGGCTAACAACCGGTATCCA 59.791 52.381 8.00 0.00 0.00 3.41
2317 4485 4.707030 AACATACGGTCACATCGACTTA 57.293 40.909 0.00 0.00 44.70 2.24
2319 4487 3.192844 AGAAACATACGGTCACATCGACT 59.807 43.478 0.00 0.00 44.70 4.18
2478 4646 8.336806 AGAGATAACTGAAACGTAGATTCGTAG 58.663 37.037 0.00 0.00 42.46 3.51
2488 4656 7.036220 CCATAGAACAGAGATAACTGAAACGT 58.964 38.462 0.00 0.00 40.63 3.99
2677 4855 4.582973 ACTAGTAAGTACTCCCTCCGTT 57.417 45.455 0.00 0.00 37.73 4.44
2694 4872 9.939802 AGTTAACAAAATAGTCCCAGTAACTAG 57.060 33.333 8.61 0.00 32.98 2.57
2695 4873 9.933723 GAGTTAACAAAATAGTCCCAGTAACTA 57.066 33.333 8.61 0.00 33.94 2.24
2696 4874 8.657712 AGAGTTAACAAAATAGTCCCAGTAACT 58.342 33.333 8.61 0.00 0.00 2.24
2703 4963 8.794335 AATCTCAGAGTTAACAAAATAGTCCC 57.206 34.615 8.61 0.00 0.00 4.46
2783 5043 6.266558 ACCATGAGACCAGAAGTACTCATATC 59.733 42.308 0.00 0.00 44.70 1.63
2924 5184 5.773176 TCGACATATTCTCCAACCATAGCTA 59.227 40.000 0.00 0.00 0.00 3.32
3065 5338 6.073765 ACAAAAACACTAGTCACATAAGAGCG 60.074 38.462 0.00 0.00 0.00 5.03
3083 5356 3.490249 GGTCACCTAGGTTGCACAAAAAC 60.490 47.826 13.15 0.82 0.00 2.43
3148 5421 7.659390 CACTTCTGGAAGATTGAAGTAGAAGTT 59.341 37.037 16.06 0.00 46.36 2.66
3214 5487 1.674651 CACTGCACATGCTCCAGCT 60.675 57.895 5.31 0.00 42.66 4.24
3314 5748 5.948992 AAGATGAGCAGTTTGTTTACTCC 57.051 39.130 0.00 0.00 0.00 3.85
3339 5773 3.772387 TGGCCCATGTGATTTTGAGTTA 58.228 40.909 0.00 0.00 0.00 2.24
3348 5782 5.954153 TGATTTTAAATGGCCCATGTGAT 57.046 34.783 0.00 0.00 0.00 3.06
3357 5791 4.330620 CACTGGCACATGATTTTAAATGGC 59.669 41.667 0.00 0.00 38.20 4.40
3411 5845 4.761739 TCTGAAGTAAAGGCAAGATGTTGG 59.238 41.667 4.57 0.00 33.87 3.77
3551 6006 9.373750 CTGCAACGTTAATTCATATTGTCATAG 57.626 33.333 0.00 0.00 0.00 2.23
3574 6029 2.510238 AGTCTTGATCGCCGCTGC 60.510 61.111 0.00 0.00 0.00 5.25
3609 6064 3.353836 CACAAGGGTTCGGGTGCG 61.354 66.667 0.00 0.00 0.00 5.34
3699 6154 7.545615 TCAACTTGTGTTCATAGCATAGTAGTG 59.454 37.037 0.00 0.00 33.52 2.74
3703 6158 6.936900 AGTTCAACTTGTGTTCATAGCATAGT 59.063 34.615 0.00 0.00 33.52 2.12
3752 6207 9.926751 CAACAGATGTTACATTCATGTTCTATC 57.073 33.333 16.20 0.93 41.97 2.08
4091 6611 6.006449 AGGGGTGCAATATGATAAAGATCAC 58.994 40.000 0.00 0.00 44.90 3.06
4111 6637 0.036875 GTGTTCCAGACTTCCAGGGG 59.963 60.000 0.00 0.00 0.00 4.79
4132 6658 9.461312 AATTGCTTGTACAATTAGTCTGGAATA 57.539 29.630 9.13 0.00 45.92 1.75
4195 6722 5.997129 TGATTCAGACAGAATTGCTTGTACA 59.003 36.000 0.00 0.00 46.76 2.90
4196 6723 6.486253 TGATTCAGACAGAATTGCTTGTAC 57.514 37.500 0.00 0.00 46.76 2.90
4197 6724 7.692460 AATGATTCAGACAGAATTGCTTGTA 57.308 32.000 0.00 0.00 46.76 2.41
4198 6725 6.585695 AATGATTCAGACAGAATTGCTTGT 57.414 33.333 0.00 0.00 46.76 3.16
4199 6726 7.088272 TGAAATGATTCAGACAGAATTGCTTG 58.912 34.615 0.00 0.00 46.76 4.01
4200 6727 7.223260 TGAAATGATTCAGACAGAATTGCTT 57.777 32.000 0.00 0.00 46.76 3.91
4201 6728 6.829229 TGAAATGATTCAGACAGAATTGCT 57.171 33.333 0.00 0.00 46.76 3.91
4214 6741 2.083774 TGTGGACCGCTGAAATGATTC 58.916 47.619 6.60 0.00 36.04 2.52
4297 6828 3.770933 ACCAGCATTCCATTAGCAACAAT 59.229 39.130 0.00 0.00 0.00 2.71
4340 6874 6.644347 TGTTGAATAAGTTTGGCCTTTTGAA 58.356 32.000 3.32 0.00 0.00 2.69
4341 6875 6.227298 TGTTGAATAAGTTTGGCCTTTTGA 57.773 33.333 3.32 0.00 0.00 2.69
4342 6876 5.050159 GCTGTTGAATAAGTTTGGCCTTTTG 60.050 40.000 3.32 0.00 0.00 2.44
4400 6938 9.733556 TGGACAGAAGTTTGTTACATAATACAT 57.266 29.630 0.00 0.00 0.00 2.29
4403 6941 7.827236 CCCTGGACAGAAGTTTGTTACATAATA 59.173 37.037 0.00 0.00 0.00 0.98
4404 6942 6.659242 CCCTGGACAGAAGTTTGTTACATAAT 59.341 38.462 0.00 0.00 0.00 1.28
4405 6943 6.001460 CCCTGGACAGAAGTTTGTTACATAA 58.999 40.000 0.00 0.00 0.00 1.90
4406 6944 5.308497 TCCCTGGACAGAAGTTTGTTACATA 59.692 40.000 0.00 0.00 0.00 2.29
4407 6945 4.104102 TCCCTGGACAGAAGTTTGTTACAT 59.896 41.667 0.00 0.00 0.00 2.29
4408 6946 3.456644 TCCCTGGACAGAAGTTTGTTACA 59.543 43.478 0.00 0.00 0.00 2.41
4409 6947 4.065789 CTCCCTGGACAGAAGTTTGTTAC 58.934 47.826 0.00 0.00 0.00 2.50
4450 6988 0.899717 GAACTGCCCCTGCCATTTGA 60.900 55.000 0.00 0.00 36.33 2.69
4453 6991 2.037847 GGAACTGCCCCTGCCATT 59.962 61.111 0.00 0.00 36.33 3.16
4454 6992 1.214305 TAAGGAACTGCCCCTGCCAT 61.214 55.000 0.00 0.00 40.86 4.40
4455 6993 1.850289 TAAGGAACTGCCCCTGCCA 60.850 57.895 0.00 0.00 40.86 4.92
4495 7065 3.068590 CACTGGTCCAGCTGAATTTGTTT 59.931 43.478 19.40 0.00 34.37 2.83
4509 7079 1.148273 TGTCCTTGCACACTGGTCC 59.852 57.895 0.00 0.00 0.00 4.46
4542 7113 7.798596 ATATTTTACTCTTGATGCAGGTCTG 57.201 36.000 0.00 0.00 0.00 3.51
4546 7117 7.646922 GCTTGAATATTTTACTCTTGATGCAGG 59.353 37.037 0.00 0.00 0.00 4.85
4583 7157 7.288810 TGCAATGTATTCTTTTTGTCCTTCT 57.711 32.000 0.00 0.00 0.00 2.85
4592 7166 7.662669 AGGAAAAGCATTGCAATGTATTCTTTT 59.337 29.630 32.67 32.67 37.52 2.27
4617 7747 2.268280 CTGAGCCTGGACCAGCAG 59.732 66.667 16.72 13.81 0.00 4.24
4659 7789 7.545265 TGTTTTGTGCAAATTAAGATAGCATCC 59.455 33.333 0.00 0.00 37.56 3.51
4687 7817 5.108385 ACTTAACAATCTTTTCCAGTGCG 57.892 39.130 0.00 0.00 0.00 5.34
4699 7829 9.994432 CATGAGGACTTAATCAACTTAACAATC 57.006 33.333 0.00 0.00 0.00 2.67
4752 8694 7.878477 TCTCTTCATGATTTTTCATTTGTGC 57.122 32.000 0.00 0.00 0.00 4.57
4763 8705 6.661304 AAGGCAAGTTTCTCTTCATGATTT 57.339 33.333 0.00 0.00 33.63 2.17
4810 8755 1.548582 CCTTGAAGCCACAACCAGGAT 60.549 52.381 0.00 0.00 0.00 3.24
4828 8773 3.580319 GGCCTGACCAACACCCCT 61.580 66.667 0.00 0.00 38.86 4.79
4883 8828 3.179443 TCAAATGACTGGCCGTAGATC 57.821 47.619 0.00 0.00 0.00 2.75
4930 8875 3.514309 GGGGCTCTACAAGAAGAACTACA 59.486 47.826 0.00 0.00 0.00 2.74
4931 8876 3.770388 AGGGGCTCTACAAGAAGAACTAC 59.230 47.826 0.00 0.00 0.00 2.73
4932 8877 3.769844 CAGGGGCTCTACAAGAAGAACTA 59.230 47.826 0.00 0.00 0.00 2.24
4933 8878 2.569404 CAGGGGCTCTACAAGAAGAACT 59.431 50.000 0.00 0.00 0.00 3.01
4934 8879 2.567615 TCAGGGGCTCTACAAGAAGAAC 59.432 50.000 0.00 0.00 0.00 3.01
4935 8880 2.902608 TCAGGGGCTCTACAAGAAGAA 58.097 47.619 0.00 0.00 0.00 2.52
4936 8881 2.567615 GTTCAGGGGCTCTACAAGAAGA 59.432 50.000 0.00 0.00 0.00 2.87
4937 8882 2.303022 TGTTCAGGGGCTCTACAAGAAG 59.697 50.000 0.00 0.00 0.00 2.85
4938 8883 2.334977 TGTTCAGGGGCTCTACAAGAA 58.665 47.619 0.00 0.00 0.00 2.52
4939 8884 2.024176 TGTTCAGGGGCTCTACAAGA 57.976 50.000 0.00 0.00 0.00 3.02
4940 8885 2.224523 TGTTGTTCAGGGGCTCTACAAG 60.225 50.000 2.96 0.00 30.16 3.16
4941 8886 1.771854 TGTTGTTCAGGGGCTCTACAA 59.228 47.619 0.00 0.00 0.00 2.41
4942 8887 1.429930 TGTTGTTCAGGGGCTCTACA 58.570 50.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.