Multiple sequence alignment - TraesCS4A01G043000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G043000 chr4A 100.000 6031 0 0 1 6031 36180066 36174036 0.000000e+00 11138.0
1 TraesCS4A01G043000 chr4A 97.957 979 17 2 5053 6031 489097328 489098303 0.000000e+00 1694.0
2 TraesCS4A01G043000 chr4A 97.636 973 20 1 5049 6021 489102777 489103746 0.000000e+00 1666.0
3 TraesCS4A01G043000 chr7A 97.355 983 26 0 5049 6031 92431781 92432763 0.000000e+00 1672.0
4 TraesCS4A01G043000 chr7A 96.244 985 32 1 5052 6031 626347583 626346599 0.000000e+00 1609.0
5 TraesCS4A01G043000 chr7A 82.090 134 13 3 623 746 668775512 668775380 2.970000e-18 104.0
6 TraesCS4A01G043000 chr3A 97.344 979 26 0 5053 6031 743222573 743223551 0.000000e+00 1664.0
7 TraesCS4A01G043000 chr3A 97.059 986 22 4 5053 6031 617542256 617543241 0.000000e+00 1653.0
8 TraesCS4A01G043000 chr3A 93.871 620 31 2 5 622 56737032 56736418 0.000000e+00 928.0
9 TraesCS4A01G043000 chr5A 96.663 989 23 6 5053 6031 402133830 402132842 0.000000e+00 1635.0
10 TraesCS4A01G043000 chr5A 96.738 981 31 1 5052 6031 616563053 616562073 0.000000e+00 1633.0
11 TraesCS4A01G043000 chr5A 93.710 620 32 2 6 623 528833496 528832882 0.000000e+00 922.0
12 TraesCS4A01G043000 chr5A 93.569 622 33 3 3 622 352477420 352478036 0.000000e+00 920.0
13 TraesCS4A01G043000 chr5A 89.655 58 3 3 3813 3869 441195917 441195972 3.020000e-08 71.3
14 TraesCS4A01G043000 chr1A 96.327 980 35 1 5052 6031 104838408 104837430 0.000000e+00 1609.0
15 TraesCS4A01G043000 chr4B 85.459 1231 78 46 2058 3252 534407855 534406690 0.000000e+00 1188.0
16 TraesCS4A01G043000 chr4B 93.260 638 25 9 4417 5052 534404612 534403991 0.000000e+00 924.0
17 TraesCS4A01G043000 chr4B 94.175 412 11 6 940 1348 534408987 534408586 3.090000e-172 616.0
18 TraesCS4A01G043000 chr4B 83.486 545 53 20 3470 4014 534406188 534405681 1.970000e-129 473.0
19 TraesCS4A01G043000 chr4B 91.331 323 20 6 4033 4353 534405277 534404961 9.280000e-118 435.0
20 TraesCS4A01G043000 chr4B 84.848 165 15 5 3324 3482 534406368 534406208 2.250000e-34 158.0
21 TraesCS4A01G043000 chr4B 81.699 153 12 5 1401 1545 534408570 534408426 4.940000e-21 113.0
22 TraesCS4A01G043000 chr4D 94.689 659 21 6 746 1396 434544169 434543517 0.000000e+00 1011.0
23 TraesCS4A01G043000 chr4D 85.807 923 76 24 3467 4388 434541437 434540569 0.000000e+00 928.0
24 TraesCS4A01G043000 chr4D 93.720 621 32 3 5 623 45785604 45786219 0.000000e+00 924.0
25 TraesCS4A01G043000 chr4D 93.271 639 18 11 4419 5054 434540501 434539885 0.000000e+00 918.0
26 TraesCS4A01G043000 chr4D 86.303 825 51 36 2063 2862 434542743 434541956 0.000000e+00 841.0
27 TraesCS4A01G043000 chr4D 91.082 527 28 10 2962 3486 434541957 434541448 0.000000e+00 695.0
28 TraesCS4A01G043000 chr4D 86.076 632 35 14 1384 1976 434543497 434542880 1.100000e-176 630.0
29 TraesCS4A01G043000 chr6A 93.891 622 30 4 3 622 582936486 582937101 0.000000e+00 931.0
30 TraesCS4A01G043000 chr3D 93.429 624 33 4 3 623 166937353 166936735 0.000000e+00 918.0
31 TraesCS4A01G043000 chr2A 93.419 623 34 2 3 623 729251974 729252591 0.000000e+00 917.0
32 TraesCS4A01G043000 chr1B 93.419 623 34 3 3 623 554682647 554682030 0.000000e+00 917.0
33 TraesCS4A01G043000 chr7D 92.535 643 36 6 3 638 105659921 105659284 0.000000e+00 911.0
34 TraesCS4A01G043000 chr6D 82.482 137 13 4 623 750 103205688 103205822 6.390000e-20 110.0
35 TraesCS4A01G043000 chrUn 100.000 29 0 0 3842 3870 207006029 207006057 3.000000e-03 54.7
36 TraesCS4A01G043000 chr5D 84.483 58 6 3 3813 3869 450176629 450176684 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G043000 chr4A 36174036 36180066 6030 True 11138.000000 11138 100.000000 1 6031 1 chr4A.!!$R1 6030
1 TraesCS4A01G043000 chr4A 489097328 489098303 975 False 1694.000000 1694 97.957000 5053 6031 1 chr4A.!!$F1 978
2 TraesCS4A01G043000 chr4A 489102777 489103746 969 False 1666.000000 1666 97.636000 5049 6021 1 chr4A.!!$F2 972
3 TraesCS4A01G043000 chr7A 92431781 92432763 982 False 1672.000000 1672 97.355000 5049 6031 1 chr7A.!!$F1 982
4 TraesCS4A01G043000 chr7A 626346599 626347583 984 True 1609.000000 1609 96.244000 5052 6031 1 chr7A.!!$R1 979
5 TraesCS4A01G043000 chr3A 743222573 743223551 978 False 1664.000000 1664 97.344000 5053 6031 1 chr3A.!!$F2 978
6 TraesCS4A01G043000 chr3A 617542256 617543241 985 False 1653.000000 1653 97.059000 5053 6031 1 chr3A.!!$F1 978
7 TraesCS4A01G043000 chr3A 56736418 56737032 614 True 928.000000 928 93.871000 5 622 1 chr3A.!!$R1 617
8 TraesCS4A01G043000 chr5A 402132842 402133830 988 True 1635.000000 1635 96.663000 5053 6031 1 chr5A.!!$R1 978
9 TraesCS4A01G043000 chr5A 616562073 616563053 980 True 1633.000000 1633 96.738000 5052 6031 1 chr5A.!!$R3 979
10 TraesCS4A01G043000 chr5A 528832882 528833496 614 True 922.000000 922 93.710000 6 623 1 chr5A.!!$R2 617
11 TraesCS4A01G043000 chr5A 352477420 352478036 616 False 920.000000 920 93.569000 3 622 1 chr5A.!!$F1 619
12 TraesCS4A01G043000 chr1A 104837430 104838408 978 True 1609.000000 1609 96.327000 5052 6031 1 chr1A.!!$R1 979
13 TraesCS4A01G043000 chr4B 534403991 534408987 4996 True 558.142857 1188 87.751143 940 5052 7 chr4B.!!$R1 4112
14 TraesCS4A01G043000 chr4D 45785604 45786219 615 False 924.000000 924 93.720000 5 623 1 chr4D.!!$F1 618
15 TraesCS4A01G043000 chr4D 434539885 434544169 4284 True 837.166667 1011 89.538000 746 5054 6 chr4D.!!$R1 4308
16 TraesCS4A01G043000 chr6A 582936486 582937101 615 False 931.000000 931 93.891000 3 622 1 chr6A.!!$F1 619
17 TraesCS4A01G043000 chr3D 166936735 166937353 618 True 918.000000 918 93.429000 3 623 1 chr3D.!!$R1 620
18 TraesCS4A01G043000 chr2A 729251974 729252591 617 False 917.000000 917 93.419000 3 623 1 chr2A.!!$F1 620
19 TraesCS4A01G043000 chr1B 554682030 554682647 617 True 917.000000 917 93.419000 3 623 1 chr1B.!!$R1 620
20 TraesCS4A01G043000 chr7D 105659284 105659921 637 True 911.000000 911 92.535000 3 638 1 chr7D.!!$R1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 970 0.175302 CGCTCCTCTGCTTCATCTGT 59.825 55.0 0.00 0.00 0.00 3.41 F
1381 1401 0.329261 CCATCACCACACCACCTCAT 59.671 55.0 0.00 0.00 0.00 2.90 F
2130 2321 0.234884 CGTCACGGAGGAAACAAAGC 59.765 55.0 0.00 0.00 0.00 3.51 F
2404 2598 0.034059 AGCAGGTGGAGAACGACAAG 59.966 55.0 0.00 0.00 0.00 3.16 F
3916 4444 0.029834 CGCAGGGCTGTTATGCATTC 59.970 55.0 3.54 0.00 39.97 2.67 F
4153 5074 0.530744 TTGGGGAGATCACGAGTTCG 59.469 55.0 0.00 0.00 46.33 3.95 F
4393 5571 0.886563 ACTAAGTCGCTGCCGTACTT 59.113 50.0 12.43 12.43 37.97 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2293 0.238289 TTTCCTCCGTGACGACGTAC 59.762 55.000 6.54 0.0 44.54 3.67 R
2318 2509 0.249489 GGACAGGCCAGCATACGTAG 60.249 60.000 5.01 0.0 36.34 3.51 R
3881 4409 0.035534 TGCGTTGGCATGGAGTATGT 60.036 50.000 0.00 0.0 46.21 2.29 R
4059 4980 0.522626 CACATGCTCGCATTTGACCA 59.477 50.000 11.52 0.0 36.52 4.02 R
4790 6013 0.397254 TCTCTCCCCGGACTGGATTC 60.397 60.000 0.73 0.0 42.00 2.52 R
4990 6214 5.753921 GCTCCTCTTTTATTACGCACATAGT 59.246 40.000 0.00 0.0 0.00 2.12 R
5867 7104 7.184753 AGTGGTTTATAAGGGATTCTCTTCCTT 59.815 37.037 1.02 0.0 42.79 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 8.124586 TCATAATTTACGGACGCGTTAATTAA 57.875 30.769 15.53 6.35 37.11 1.40
104 105 0.827089 TCGGACGTGGGGTTTACTCA 60.827 55.000 0.00 0.00 0.00 3.41
141 142 2.558795 CCGCACTATATAGTCAGGCAGT 59.441 50.000 12.62 0.00 33.46 4.40
142 143 3.005897 CCGCACTATATAGTCAGGCAGTT 59.994 47.826 12.62 0.00 33.46 3.16
309 311 1.155390 CCTATACGGGAGAGGGGCA 59.845 63.158 0.00 0.00 0.00 5.36
563 569 8.758633 TTTTTAATCTCTGCTACTGTAGTCAC 57.241 34.615 15.71 0.90 0.00 3.67
628 637 8.498054 TTTGCTCATATTTCCAACAAAAACAA 57.502 26.923 0.00 0.00 0.00 2.83
641 650 9.760660 TCCAACAAAAACAATGTTTATTTTTCG 57.239 25.926 12.11 2.57 38.90 3.46
642 651 9.004146 CCAACAAAAACAATGTTTATTTTTCGG 57.996 29.630 12.11 3.96 38.90 4.30
643 652 9.548208 CAACAAAAACAATGTTTATTTTTCGGT 57.452 25.926 12.11 0.00 38.90 4.69
644 653 9.762062 AACAAAAACAATGTTTATTTTTCGGTC 57.238 25.926 12.11 0.00 37.74 4.79
645 654 8.111224 ACAAAAACAATGTTTATTTTTCGGTCG 58.889 29.630 12.11 0.00 34.19 4.79
646 655 7.758613 AAAACAATGTTTATTTTTCGGTCGT 57.241 28.000 12.11 0.00 0.00 4.34
647 656 7.758613 AAACAATGTTTATTTTTCGGTCGTT 57.241 28.000 9.92 0.00 0.00 3.85
648 657 7.758613 AACAATGTTTATTTTTCGGTCGTTT 57.241 28.000 0.00 0.00 0.00 3.60
649 658 7.155858 ACAATGTTTATTTTTCGGTCGTTTG 57.844 32.000 0.00 0.00 0.00 2.93
650 659 6.199342 ACAATGTTTATTTTTCGGTCGTTTGG 59.801 34.615 0.00 0.00 0.00 3.28
651 660 5.496133 TGTTTATTTTTCGGTCGTTTGGA 57.504 34.783 0.00 0.00 0.00 3.53
652 661 6.074544 TGTTTATTTTTCGGTCGTTTGGAT 57.925 33.333 0.00 0.00 0.00 3.41
653 662 6.505272 TGTTTATTTTTCGGTCGTTTGGATT 58.495 32.000 0.00 0.00 0.00 3.01
654 663 6.979238 TGTTTATTTTTCGGTCGTTTGGATTT 59.021 30.769 0.00 0.00 0.00 2.17
655 664 8.133627 TGTTTATTTTTCGGTCGTTTGGATTTA 58.866 29.630 0.00 0.00 0.00 1.40
656 665 9.131416 GTTTATTTTTCGGTCGTTTGGATTTAT 57.869 29.630 0.00 0.00 0.00 1.40
657 666 9.694137 TTTATTTTTCGGTCGTTTGGATTTATT 57.306 25.926 0.00 0.00 0.00 1.40
658 667 6.994868 TTTTTCGGTCGTTTGGATTTATTG 57.005 33.333 0.00 0.00 0.00 1.90
659 668 4.688511 TTCGGTCGTTTGGATTTATTGG 57.311 40.909 0.00 0.00 0.00 3.16
660 669 2.420722 TCGGTCGTTTGGATTTATTGGC 59.579 45.455 0.00 0.00 0.00 4.52
661 670 2.422127 CGGTCGTTTGGATTTATTGGCT 59.578 45.455 0.00 0.00 0.00 4.75
662 671 3.730662 CGGTCGTTTGGATTTATTGGCTG 60.731 47.826 0.00 0.00 0.00 4.85
663 672 3.192633 GGTCGTTTGGATTTATTGGCTGT 59.807 43.478 0.00 0.00 0.00 4.40
664 673 4.165779 GTCGTTTGGATTTATTGGCTGTG 58.834 43.478 0.00 0.00 0.00 3.66
665 674 3.823873 TCGTTTGGATTTATTGGCTGTGT 59.176 39.130 0.00 0.00 0.00 3.72
666 675 5.004448 TCGTTTGGATTTATTGGCTGTGTA 58.996 37.500 0.00 0.00 0.00 2.90
667 676 5.092781 CGTTTGGATTTATTGGCTGTGTAC 58.907 41.667 0.00 0.00 0.00 2.90
668 677 5.335269 CGTTTGGATTTATTGGCTGTGTACA 60.335 40.000 0.00 0.00 0.00 2.90
669 678 6.624861 CGTTTGGATTTATTGGCTGTGTACAT 60.625 38.462 0.00 0.00 0.00 2.29
670 679 6.449635 TTGGATTTATTGGCTGTGTACATC 57.550 37.500 0.00 0.00 0.00 3.06
671 680 5.504853 TGGATTTATTGGCTGTGTACATCA 58.495 37.500 0.00 0.00 0.00 3.07
672 681 6.128486 TGGATTTATTGGCTGTGTACATCAT 58.872 36.000 0.00 0.00 0.00 2.45
673 682 6.039605 TGGATTTATTGGCTGTGTACATCATG 59.960 38.462 0.00 0.00 0.00 3.07
674 683 6.039717 GGATTTATTGGCTGTGTACATCATGT 59.960 38.462 0.00 0.00 0.00 3.21
675 684 6.832520 TTTATTGGCTGTGTACATCATGTT 57.167 33.333 0.00 0.00 0.00 2.71
676 685 7.929941 TTTATTGGCTGTGTACATCATGTTA 57.070 32.000 0.00 0.00 0.00 2.41
677 686 8.518430 TTTATTGGCTGTGTACATCATGTTAT 57.482 30.769 0.00 0.00 0.00 1.89
678 687 5.816449 TTGGCTGTGTACATCATGTTATG 57.184 39.130 0.00 0.00 0.00 1.90
679 688 3.627123 TGGCTGTGTACATCATGTTATGC 59.373 43.478 0.00 0.00 0.00 3.14
680 689 3.627123 GGCTGTGTACATCATGTTATGCA 59.373 43.478 0.00 0.00 0.00 3.96
681 690 4.260907 GGCTGTGTACATCATGTTATGCAG 60.261 45.833 0.00 1.54 0.00 4.41
682 691 4.571984 GCTGTGTACATCATGTTATGCAGA 59.428 41.667 0.00 0.00 0.00 4.26
683 692 5.277202 GCTGTGTACATCATGTTATGCAGAG 60.277 44.000 0.00 0.35 0.00 3.35
684 693 5.118286 TGTGTACATCATGTTATGCAGAGG 58.882 41.667 0.00 0.00 0.00 3.69
685 694 4.512944 GTGTACATCATGTTATGCAGAGGG 59.487 45.833 0.00 0.00 0.00 4.30
686 695 2.579873 ACATCATGTTATGCAGAGGGC 58.420 47.619 0.00 0.00 45.13 5.19
687 696 1.884579 CATCATGTTATGCAGAGGGCC 59.115 52.381 0.00 0.00 43.89 5.80
688 697 0.179048 TCATGTTATGCAGAGGGCCG 60.179 55.000 0.00 0.00 43.89 6.13
689 698 1.149174 ATGTTATGCAGAGGGCCGG 59.851 57.895 0.00 0.00 43.89 6.13
690 699 2.902343 GTTATGCAGAGGGCCGGC 60.902 66.667 21.18 21.18 43.89 6.13
694 703 4.365111 TGCAGAGGGCCGGCATTT 62.365 61.111 30.85 13.08 40.96 2.32
695 704 3.070576 GCAGAGGGCCGGCATTTT 61.071 61.111 30.85 10.11 35.96 1.82
696 705 2.649129 GCAGAGGGCCGGCATTTTT 61.649 57.895 30.85 8.03 35.96 1.94
772 781 6.170506 TGTAGTAAAGGCTCATAAGTTGTGG 58.829 40.000 0.00 0.00 0.00 4.17
777 786 4.373156 AGGCTCATAAGTTGTGGTTCTT 57.627 40.909 0.00 0.00 0.00 2.52
780 789 4.072131 GCTCATAAGTTGTGGTTCTTCCA 58.928 43.478 0.00 0.00 45.01 3.53
835 844 7.977789 TGCACATATTCTCACTTAAGTCAAA 57.022 32.000 4.77 0.82 0.00 2.69
843 852 7.724305 TTCTCACTTAAGTCAAACCATACAC 57.276 36.000 4.77 0.00 0.00 2.90
850 859 5.570234 AAGTCAAACCATACACACGTTTT 57.430 34.783 0.00 0.00 0.00 2.43
865 874 5.113975 CACACGTTTTGATTTGATCTCAACG 59.886 40.000 16.50 16.50 44.08 4.10
867 876 6.079763 CACGTTTTGATTTGATCTCAACGAT 58.920 36.000 21.18 10.37 42.64 3.73
961 970 0.175302 CGCTCCTCTGCTTCATCTGT 59.825 55.000 0.00 0.00 0.00 3.41
1062 1074 4.246712 AGTTAGCCACTACTAGCCACTA 57.753 45.455 0.00 0.00 31.97 2.74
1068 1080 3.858247 CCACTACTAGCCACTAAACACC 58.142 50.000 0.00 0.00 0.00 4.16
1373 1393 1.915078 CTCCCTCCCCATCACCACAC 61.915 65.000 0.00 0.00 0.00 3.82
1379 1399 1.002134 CCCATCACCACACCACCTC 60.002 63.158 0.00 0.00 0.00 3.85
1380 1400 1.760527 CCATCACCACACCACCTCA 59.239 57.895 0.00 0.00 0.00 3.86
1381 1401 0.329261 CCATCACCACACCACCTCAT 59.671 55.000 0.00 0.00 0.00 2.90
1382 1402 1.679944 CCATCACCACACCACCTCATC 60.680 57.143 0.00 0.00 0.00 2.92
1393 1444 5.355350 CACACCACCTCATCTTAATTTCCTC 59.645 44.000 0.00 0.00 0.00 3.71
1401 1452 5.684704 TCATCTTAATTTCCTCGCCTGATT 58.315 37.500 0.00 0.00 0.00 2.57
1449 1512 1.570803 ATCAACCTGCTCTCTCTGCT 58.429 50.000 0.00 0.00 0.00 4.24
1496 1559 4.489771 CCTCCACCATCCACGGCC 62.490 72.222 0.00 0.00 0.00 6.13
1509 1572 4.742201 CGGCCCACTGTCTCACCG 62.742 72.222 0.00 0.00 0.00 4.94
1553 1648 1.442857 GTCACGGCTCACTGTCTCG 60.443 63.158 0.00 0.00 31.05 4.04
1555 1650 4.057428 ACGGCTCACTGTCTCGCC 62.057 66.667 0.00 0.00 39.14 5.54
1640 1737 3.854459 GCGCGAAGTAGCCACTGC 61.854 66.667 12.10 0.00 34.36 4.40
1641 1738 3.188786 CGCGAAGTAGCCACTGCC 61.189 66.667 0.00 0.00 38.69 4.85
1642 1739 2.820037 GCGAAGTAGCCACTGCCC 60.820 66.667 0.00 0.00 38.69 5.36
1643 1740 2.509336 CGAAGTAGCCACTGCCCG 60.509 66.667 0.00 0.00 38.69 6.13
1644 1741 2.125106 GAAGTAGCCACTGCCCGG 60.125 66.667 0.00 0.00 38.69 5.73
1658 1755 4.217159 CCGGCCACTAGGTACGGC 62.217 72.222 2.24 6.27 45.58 5.68
1674 1771 1.081242 GGCTGTTCACATTGCGGTG 60.081 57.895 0.00 0.00 40.16 4.94
1737 1836 2.046892 CGCCCATGGGATCGATCC 60.047 66.667 36.00 32.57 46.41 3.36
1770 1869 8.401709 CCCATTGTTCTAGCTAAGATTCTTTTC 58.598 37.037 3.86 0.00 33.05 2.29
1795 1900 1.155424 TGGTTTTCACACGACGAGCC 61.155 55.000 0.00 0.00 0.00 4.70
1812 1917 3.005578 CGAGCCTGTACCTTATTACCCTC 59.994 52.174 0.00 0.00 0.00 4.30
1842 1971 1.029947 GTAACCCGGCCAATGTCCTG 61.030 60.000 2.24 0.00 0.00 3.86
1863 1992 1.068333 GTACCACTTCCGTTACGAGCA 60.068 52.381 6.24 0.00 0.00 4.26
1892 2024 5.724328 TGCTCAGTTGTAGTAATCTTCCTG 58.276 41.667 0.00 0.00 0.00 3.86
1976 2109 4.918201 GGCCGGGAAGCGATCAGG 62.918 72.222 2.18 0.00 0.00 3.86
1979 2112 2.498941 CCGGGAAGCGATCAGGCTA 61.499 63.158 0.00 0.00 43.93 3.93
2002 2146 2.912624 GCCACCACAGCAGCAGTTC 61.913 63.158 0.00 0.00 0.00 3.01
2006 2150 2.554775 CACAGCAGCAGTTCAGCG 59.445 61.111 0.00 0.00 40.15 5.18
2007 2151 3.352222 ACAGCAGCAGTTCAGCGC 61.352 61.111 0.00 0.00 40.15 5.92
2009 2153 3.352222 AGCAGCAGTTCAGCGCAC 61.352 61.111 11.47 0.00 40.15 5.34
2016 2160 2.249535 AGTTCAGCGCACAGTGCAG 61.250 57.895 25.19 17.74 45.36 4.41
2017 2161 2.974148 TTCAGCGCACAGTGCAGG 60.974 61.111 25.19 13.28 45.36 4.85
2019 2163 3.420606 CAGCGCACAGTGCAGGAG 61.421 66.667 25.19 9.91 45.36 3.69
2020 2164 3.933722 AGCGCACAGTGCAGGAGT 61.934 61.111 25.19 1.44 45.36 3.85
2021 2165 2.048222 GCGCACAGTGCAGGAGTA 60.048 61.111 25.19 0.00 45.36 2.59
2022 2166 2.097038 GCGCACAGTGCAGGAGTAG 61.097 63.158 25.19 8.08 45.36 2.57
2023 2167 1.290324 CGCACAGTGCAGGAGTAGT 59.710 57.895 25.19 0.00 45.36 2.73
2024 2168 0.526211 CGCACAGTGCAGGAGTAGTA 59.474 55.000 25.19 0.00 45.36 1.82
2025 2169 1.468224 CGCACAGTGCAGGAGTAGTAG 60.468 57.143 25.19 0.87 45.36 2.57
2026 2170 1.546476 GCACAGTGCAGGAGTAGTAGT 59.454 52.381 21.22 0.00 44.26 2.73
2027 2171 2.028930 GCACAGTGCAGGAGTAGTAGTT 60.029 50.000 21.22 0.00 44.26 2.24
2028 2172 3.555168 GCACAGTGCAGGAGTAGTAGTTT 60.555 47.826 21.22 0.00 44.26 2.66
2029 2173 4.632153 CACAGTGCAGGAGTAGTAGTTTT 58.368 43.478 0.00 0.00 0.00 2.43
2030 2174 4.686554 CACAGTGCAGGAGTAGTAGTTTTC 59.313 45.833 0.00 0.00 0.00 2.29
2033 2177 5.992217 CAGTGCAGGAGTAGTAGTTTTCTTT 59.008 40.000 0.00 0.00 0.00 2.52
2034 2178 6.483640 CAGTGCAGGAGTAGTAGTTTTCTTTT 59.516 38.462 0.00 0.00 0.00 2.27
2035 2179 7.012421 CAGTGCAGGAGTAGTAGTTTTCTTTTT 59.988 37.037 0.00 0.00 0.00 1.94
2037 2181 7.226918 GTGCAGGAGTAGTAGTTTTCTTTTTCT 59.773 37.037 0.00 0.00 0.00 2.52
2038 2182 7.773690 TGCAGGAGTAGTAGTTTTCTTTTTCTT 59.226 33.333 0.00 0.00 0.00 2.52
2056 2236 4.689612 TCTTTTTGACTGCAGGAGTAGT 57.310 40.909 19.93 0.00 43.78 2.73
2061 2241 1.472878 TGACTGCAGGAGTAGTTAGCG 59.527 52.381 19.93 0.00 41.01 4.26
2080 2268 0.814010 GGAGCAACCACCGCGATAAT 60.814 55.000 8.23 0.00 38.79 1.28
2083 2271 2.210116 AGCAACCACCGCGATAATTAG 58.790 47.619 8.23 0.00 0.00 1.73
2096 2284 4.717991 CGATAATTAGCCAGAGACGAGAG 58.282 47.826 0.00 0.00 0.00 3.20
2128 2319 1.574134 GTCGTCACGGAGGAAACAAA 58.426 50.000 0.00 0.00 0.00 2.83
2129 2320 1.525619 GTCGTCACGGAGGAAACAAAG 59.474 52.381 0.00 0.00 0.00 2.77
2130 2321 0.234884 CGTCACGGAGGAAACAAAGC 59.765 55.000 0.00 0.00 0.00 3.51
2131 2322 0.234884 GTCACGGAGGAAACAAAGCG 59.765 55.000 0.00 0.00 0.00 4.68
2132 2323 1.082104 CACGGAGGAAACAAAGCGC 60.082 57.895 0.00 0.00 0.00 5.92
2133 2324 1.227853 ACGGAGGAAACAAAGCGCT 60.228 52.632 2.64 2.64 0.00 5.92
2142 2333 2.148916 AACAAAGCGCTTTAAAGGCC 57.851 45.000 33.20 0.00 0.00 5.19
2195 2386 3.279116 CCATATGTGCCGGTGCCG 61.279 66.667 1.90 3.25 36.33 5.69
2196 2387 3.952675 CATATGTGCCGGTGCCGC 61.953 66.667 1.90 1.84 38.24 6.53
2256 2447 4.354162 TCTGCCTGCCTGCATGCA 62.354 61.111 21.29 21.29 43.30 3.96
2274 2465 2.735772 ATGTAGACGGGCAGGCAGG 61.736 63.158 0.00 0.00 0.00 4.85
2297 2488 0.521735 GGCCGTGAAACTCCATTGAC 59.478 55.000 0.00 0.00 31.75 3.18
2301 2492 3.670627 GCCGTGAAACTCCATTGACAATC 60.671 47.826 0.00 0.00 31.75 2.67
2331 2522 3.174790 CGTACCTACGTATGCTGGC 57.825 57.895 0.00 0.00 44.13 4.85
2332 2523 0.318445 CGTACCTACGTATGCTGGCC 60.318 60.000 0.00 0.00 44.13 5.36
2333 2524 1.038280 GTACCTACGTATGCTGGCCT 58.962 55.000 3.32 0.00 0.00 5.19
2334 2525 1.037493 TACCTACGTATGCTGGCCTG 58.963 55.000 3.32 4.26 0.00 4.85
2335 2526 0.976073 ACCTACGTATGCTGGCCTGT 60.976 55.000 11.69 0.00 0.00 4.00
2336 2527 0.249489 CCTACGTATGCTGGCCTGTC 60.249 60.000 11.69 4.44 0.00 3.51
2337 2528 0.249489 CTACGTATGCTGGCCTGTCC 60.249 60.000 11.69 0.00 0.00 4.02
2338 2529 1.682451 TACGTATGCTGGCCTGTCCC 61.682 60.000 11.69 0.00 0.00 4.46
2339 2530 2.735772 CGTATGCTGGCCTGTCCCT 61.736 63.158 11.69 0.00 0.00 4.20
2340 2531 1.609783 GTATGCTGGCCTGTCCCTT 59.390 57.895 11.69 0.00 0.00 3.95
2341 2532 0.837272 GTATGCTGGCCTGTCCCTTA 59.163 55.000 11.69 0.00 0.00 2.69
2342 2533 0.837272 TATGCTGGCCTGTCCCTTAC 59.163 55.000 11.69 0.00 0.00 2.34
2343 2534 1.926426 ATGCTGGCCTGTCCCTTACC 61.926 60.000 11.69 0.00 0.00 2.85
2344 2535 2.998949 CTGGCCTGTCCCTTACCC 59.001 66.667 3.32 0.00 0.00 3.69
2345 2536 1.616628 CTGGCCTGTCCCTTACCCT 60.617 63.158 3.32 0.00 0.00 4.34
2346 2537 1.915078 CTGGCCTGTCCCTTACCCTG 61.915 65.000 3.32 0.00 0.00 4.45
2347 2538 1.615424 GGCCTGTCCCTTACCCTGA 60.615 63.158 0.00 0.00 0.00 3.86
2348 2539 0.988678 GGCCTGTCCCTTACCCTGAT 60.989 60.000 0.00 0.00 0.00 2.90
2349 2540 0.181350 GCCTGTCCCTTACCCTGATG 59.819 60.000 0.00 0.00 0.00 3.07
2350 2541 0.839946 CCTGTCCCTTACCCTGATGG 59.160 60.000 0.00 0.00 41.37 3.51
2368 2559 4.916293 GATGGCATCGCAGCGGGA 62.916 66.667 16.42 0.00 34.64 5.14
2369 2560 4.923942 ATGGCATCGCAGCGGGAG 62.924 66.667 16.42 6.32 34.64 4.30
2387 2581 2.098831 GCGAGGTGAAACGGGTAGC 61.099 63.158 0.00 0.00 38.12 3.58
2391 2585 1.125711 AGGTGAAACGGGTAGCAGGT 61.126 55.000 0.00 0.00 38.12 4.00
2401 2595 0.108756 GGTAGCAGGTGGAGAACGAC 60.109 60.000 0.00 0.00 0.00 4.34
2402 2596 0.601558 GTAGCAGGTGGAGAACGACA 59.398 55.000 0.00 0.00 0.00 4.35
2403 2597 1.000506 GTAGCAGGTGGAGAACGACAA 59.999 52.381 0.00 0.00 0.00 3.18
2404 2598 0.034059 AGCAGGTGGAGAACGACAAG 59.966 55.000 0.00 0.00 0.00 3.16
2405 2599 0.249911 GCAGGTGGAGAACGACAAGT 60.250 55.000 0.00 0.00 0.00 3.16
2406 2600 1.502231 CAGGTGGAGAACGACAAGTG 58.498 55.000 0.00 0.00 0.00 3.16
2407 2601 1.120530 AGGTGGAGAACGACAAGTGT 58.879 50.000 0.00 0.00 0.00 3.55
2409 2603 1.202486 GGTGGAGAACGACAAGTGTGA 60.202 52.381 0.00 0.00 0.00 3.58
2411 2605 1.140816 GGAGAACGACAAGTGTGAGC 58.859 55.000 0.00 0.00 0.00 4.26
2418 2618 1.880601 GACAAGTGTGAGCGTGCTCG 61.881 60.000 16.39 3.31 45.48 5.03
2495 2705 1.595929 ATTTATGGGGGCGCGTACG 60.596 57.895 11.84 11.84 44.07 3.67
2546 2769 0.249398 ACGGTTGAGGCACATCTACC 59.751 55.000 5.95 5.95 40.42 3.18
2554 2777 4.523083 TGAGGCACATCTACCATTTTACC 58.477 43.478 0.00 0.00 0.00 2.85
2622 2845 5.485353 TGGTGTTCTTCTATCAGTGGAGAAT 59.515 40.000 8.34 0.00 31.45 2.40
2626 2849 9.255304 GTGTTCTTCTATCAGTGGAGAATTATC 57.745 37.037 8.34 0.00 31.45 1.75
2752 2979 1.442520 CGTTTGCATCGCCCACTTG 60.443 57.895 0.00 0.00 0.00 3.16
2821 3052 1.055040 GCTAGCAGGACCATCCTCAT 58.945 55.000 10.63 0.00 45.66 2.90
2822 3053 1.270732 GCTAGCAGGACCATCCTCATG 60.271 57.143 10.63 0.00 45.66 3.07
2825 3056 0.818445 GCAGGACCATCCTCATGCAG 60.818 60.000 1.19 0.00 45.66 4.41
2826 3057 0.545171 CAGGACCATCCTCATGCAGT 59.455 55.000 0.00 0.00 45.66 4.40
2827 3058 0.835941 AGGACCATCCTCATGCAGTC 59.164 55.000 0.00 0.00 45.66 3.51
2828 3059 0.543277 GGACCATCCTCATGCAGTCA 59.457 55.000 0.00 0.00 32.53 3.41
2829 3060 1.065199 GGACCATCCTCATGCAGTCAA 60.065 52.381 0.00 0.00 32.53 3.18
2830 3061 2.286872 GACCATCCTCATGCAGTCAAG 58.713 52.381 0.00 0.00 0.00 3.02
2842 3073 3.989104 AGTCAAGACTGGACCAACG 57.011 52.632 6.35 0.00 40.75 4.10
2843 3074 1.410004 AGTCAAGACTGGACCAACGA 58.590 50.000 6.35 0.00 40.75 3.85
2844 3075 1.341531 AGTCAAGACTGGACCAACGAG 59.658 52.381 6.35 0.00 40.75 4.18
2845 3076 1.068741 GTCAAGACTGGACCAACGAGT 59.931 52.381 0.00 0.00 40.12 4.18
2846 3077 1.068588 TCAAGACTGGACCAACGAGTG 59.931 52.381 0.00 0.00 37.67 3.51
2890 3121 3.006859 ACAATTGAAAAGCTAACCCAGGC 59.993 43.478 13.59 0.00 0.00 4.85
2934 3165 5.415701 ACAAGTAATTCTGTAGGCCAACATG 59.584 40.000 5.01 0.00 0.00 3.21
2941 3172 3.838317 TCTGTAGGCCAACATGAAGTACT 59.162 43.478 5.01 0.00 0.00 2.73
2942 3173 5.020795 TCTGTAGGCCAACATGAAGTACTA 58.979 41.667 5.01 0.00 0.00 1.82
2944 3175 4.775780 TGTAGGCCAACATGAAGTACTACT 59.224 41.667 5.01 0.00 32.85 2.57
2946 3177 3.197983 AGGCCAACATGAAGTACTACTCC 59.802 47.826 5.01 0.00 0.00 3.85
2947 3178 3.055385 GGCCAACATGAAGTACTACTCCA 60.055 47.826 0.00 0.00 0.00 3.86
2948 3179 3.933332 GCCAACATGAAGTACTACTCCAC 59.067 47.826 0.00 0.00 0.00 4.02
2949 3180 4.562757 GCCAACATGAAGTACTACTCCACA 60.563 45.833 0.00 0.00 0.00 4.17
2950 3181 4.929808 CCAACATGAAGTACTACTCCACAC 59.070 45.833 0.00 0.00 0.00 3.82
2951 3182 5.510690 CCAACATGAAGTACTACTCCACACA 60.511 44.000 0.00 0.00 0.00 3.72
2952 3183 5.392767 ACATGAAGTACTACTCCACACAG 57.607 43.478 0.00 0.00 0.00 3.66
2953 3184 4.833380 ACATGAAGTACTACTCCACACAGT 59.167 41.667 0.00 0.00 0.00 3.55
3008 3239 1.419387 AGGATCCTGGTGATAGCAAGC 59.581 52.381 15.29 0.00 32.41 4.01
3017 3248 2.017049 GTGATAGCAAGCGGAATGGTT 58.983 47.619 0.00 0.00 39.32 3.67
3138 3369 8.304202 CTGTGATCAGGCAAGTTAATATAGTC 57.696 38.462 0.00 0.00 37.97 2.59
3142 3373 8.635328 TGATCAGGCAAGTTAATATAGTCGTTA 58.365 33.333 0.00 0.00 0.00 3.18
3160 3391 3.685058 GTTATTGTCGCCATCAGCTTTC 58.315 45.455 0.00 0.00 40.39 2.62
3184 3415 5.447478 TTGTCATTTGTTTGCTTTCGTTG 57.553 34.783 0.00 0.00 0.00 4.10
3196 3427 3.753797 TGCTTTCGTTGGCATACATACAA 59.246 39.130 0.00 0.00 33.23 2.41
3213 3444 5.827797 ACATACAACATGTTTGTCTCCTTGT 59.172 36.000 8.77 3.76 37.91 3.16
3229 3460 3.572682 TCCTTGTTCGTCACTATCAGTGT 59.427 43.478 6.23 0.00 46.03 3.55
3329 3818 8.462811 TCTGTGTGAAGAATGAGAGTATTAGAC 58.537 37.037 0.00 0.00 0.00 2.59
3359 3848 4.481368 AATTCATGCATTTGCCAGATGT 57.519 36.364 0.00 0.00 41.18 3.06
3381 3875 6.000840 TGTGTAAACTGCATGGATTTACTGA 58.999 36.000 21.14 12.08 38.85 3.41
3382 3876 6.072728 TGTGTAAACTGCATGGATTTACTGAC 60.073 38.462 21.14 16.09 38.85 3.51
3383 3877 6.000840 TGTAAACTGCATGGATTTACTGACA 58.999 36.000 21.14 9.91 38.85 3.58
3384 3878 6.658816 TGTAAACTGCATGGATTTACTGACAT 59.341 34.615 21.14 0.00 38.85 3.06
3385 3879 7.826744 TGTAAACTGCATGGATTTACTGACATA 59.173 33.333 21.14 7.83 38.85 2.29
3415 3909 8.211629 ACTTCTTTTCCTTTTTCTCTACAGCTA 58.788 33.333 0.00 0.00 0.00 3.32
3457 3952 8.788325 AAAACTTACTGTCCATAATACTGACC 57.212 34.615 0.00 0.00 0.00 4.02
3458 3953 7.735326 AACTTACTGTCCATAATACTGACCT 57.265 36.000 0.00 0.00 0.00 3.85
3461 3956 9.263446 ACTTACTGTCCATAATACTGACCTTTA 57.737 33.333 0.00 0.00 0.00 1.85
3520 4048 3.763360 TGCATTTATAGCATATGGGGCAC 59.237 43.478 4.56 0.00 37.02 5.01
3521 4049 4.019174 GCATTTATAGCATATGGGGCACT 58.981 43.478 4.56 0.00 0.00 4.40
3522 4050 4.096984 GCATTTATAGCATATGGGGCACTC 59.903 45.833 4.56 0.00 0.00 3.51
3523 4051 4.301072 TTTATAGCATATGGGGCACTCC 57.699 45.455 4.56 0.00 0.00 3.85
3524 4052 2.050754 ATAGCATATGGGGCACTCCT 57.949 50.000 4.56 0.00 35.33 3.69
3533 4061 1.000993 GGGCACTCCTCTCCTCTGA 59.999 63.158 0.00 0.00 0.00 3.27
3580 4108 0.382158 TCAGGTCACATCGATCTCGC 59.618 55.000 0.00 0.00 30.27 5.03
3589 4117 1.872197 ATCGATCTCGCCTAGCTGCC 61.872 60.000 0.00 0.00 39.60 4.85
3608 4136 1.924524 CCGCGGTACTGTTTGTATCAG 59.075 52.381 19.50 0.00 38.68 2.90
3631 4159 2.029290 ACTTGTCCGTACATCAGGTCAC 60.029 50.000 0.00 0.00 34.97 3.67
3639 4167 3.975035 CGTACATCAGGTCACATATCACG 59.025 47.826 0.00 0.00 0.00 4.35
3728 4256 7.524717 AACACACTTAATTAAGACCAGCAAT 57.475 32.000 27.92 3.86 37.08 3.56
3729 4257 8.630054 AACACACTTAATTAAGACCAGCAATA 57.370 30.769 27.92 0.00 37.08 1.90
3740 4268 3.511146 AGACCAGCAATATTTGTGGTTGG 59.489 43.478 16.36 10.95 41.68 3.77
3741 4269 2.566724 ACCAGCAATATTTGTGGTTGGG 59.433 45.455 11.32 0.00 40.01 4.12
3742 4270 2.566724 CCAGCAATATTTGTGGTTGGGT 59.433 45.455 5.07 0.00 31.49 4.51
3745 4273 3.900601 AGCAATATTTGTGGTTGGGTGAA 59.099 39.130 0.00 0.00 0.00 3.18
3748 4276 5.229423 CAATATTTGTGGTTGGGTGAACAG 58.771 41.667 0.00 0.00 36.12 3.16
3749 4277 2.223803 TTTGTGGTTGGGTGAACAGT 57.776 45.000 0.00 0.00 36.12 3.55
3750 4278 2.223803 TTGTGGTTGGGTGAACAGTT 57.776 45.000 0.00 0.00 36.12 3.16
3751 4279 2.223803 TGTGGTTGGGTGAACAGTTT 57.776 45.000 0.00 0.00 36.12 2.66
3775 4303 5.731957 TTTTTCCTATAAAGGGCGCTTTT 57.268 34.783 30.56 20.40 43.84 2.27
3776 4304 6.837471 TTTTTCCTATAAAGGGCGCTTTTA 57.163 33.333 30.56 20.42 43.84 1.52
3778 4306 7.412853 TTTTCCTATAAAGGGCGCTTTTATT 57.587 32.000 30.56 18.82 43.84 1.40
3780 4308 8.522542 TTTCCTATAAAGGGCGCTTTTATTAA 57.477 30.769 30.56 15.02 43.84 1.40
3782 4310 8.700439 TCCTATAAAGGGCGCTTTTATTAATT 57.300 30.769 30.56 9.43 43.84 1.40
3783 4311 9.138596 TCCTATAAAGGGCGCTTTTATTAATTT 57.861 29.630 30.56 8.73 43.84 1.82
3818 4346 4.131596 TCCAGCTGGTACAAAGTACAAAC 58.868 43.478 31.58 0.00 38.70 2.93
3827 4355 6.945435 TGGTACAAAGTACAAACCATGATGAT 59.055 34.615 9.27 0.00 35.34 2.45
3828 4356 7.120579 TGGTACAAAGTACAAACCATGATGATC 59.879 37.037 9.27 0.00 35.34 2.92
3832 4360 5.344743 AGTACAAACCATGATGATCGACT 57.655 39.130 0.00 0.00 0.00 4.18
3836 4364 1.051812 ACCATGATGATCGACTCCCC 58.948 55.000 0.00 0.00 0.00 4.81
3837 4365 1.346062 CCATGATGATCGACTCCCCT 58.654 55.000 0.00 0.00 0.00 4.79
3838 4366 1.001746 CCATGATGATCGACTCCCCTG 59.998 57.143 0.00 0.00 0.00 4.45
3841 4369 0.755686 GATGATCGACTCCCCTGCTT 59.244 55.000 0.00 0.00 0.00 3.91
3842 4370 0.755686 ATGATCGACTCCCCTGCTTC 59.244 55.000 0.00 0.00 0.00 3.86
3864 4392 1.194098 GCATAGCTAAGATGCGCACAG 59.806 52.381 14.90 9.12 40.29 3.66
3874 4402 4.264638 GCGCACAGCCAAACGGTT 62.265 61.111 0.30 0.00 40.81 4.44
3875 4403 2.353376 CGCACAGCCAAACGGTTG 60.353 61.111 6.11 6.11 40.43 3.77
3876 4404 2.658268 GCACAGCCAAACGGTTGC 60.658 61.111 7.95 3.41 38.27 4.17
3877 4405 3.119193 CACAGCCAAACGGTTGCT 58.881 55.556 7.95 5.97 38.27 3.91
3878 4406 1.008538 CACAGCCAAACGGTTGCTC 60.009 57.895 7.95 1.27 38.27 4.26
3879 4407 2.252260 CAGCCAAACGGTTGCTCG 59.748 61.111 7.95 0.00 33.01 5.03
3880 4408 2.110213 AGCCAAACGGTTGCTCGA 59.890 55.556 7.95 0.00 33.01 4.04
3881 4409 1.525077 AGCCAAACGGTTGCTCGAA 60.525 52.632 7.95 0.00 33.01 3.71
3895 4423 1.473257 GCTCGAACATACTCCATGCCA 60.473 52.381 0.00 0.00 38.29 4.92
3898 4426 1.327460 CGAACATACTCCATGCCAACG 59.673 52.381 0.00 0.00 38.29 4.10
3916 4444 0.029834 CGCAGGGCTGTTATGCATTC 59.970 55.000 3.54 0.00 39.97 2.67
3940 4468 4.041075 TGCAGTGACCCTTTACTTATGTCA 59.959 41.667 0.00 0.00 33.83 3.58
3954 4482 4.949856 ACTTATGTCATTGTCATGGTTCCC 59.050 41.667 6.65 0.00 0.00 3.97
3955 4483 2.214376 TGTCATTGTCATGGTTCCCC 57.786 50.000 0.00 0.00 0.00 4.81
3959 4487 3.515104 GTCATTGTCATGGTTCCCCAAAT 59.485 43.478 0.00 0.00 46.04 2.32
3963 4491 4.329638 TGTCATGGTTCCCCAAATATGT 57.670 40.909 0.00 0.00 46.04 2.29
4008 4536 7.069950 AGAGTAGTATTGATGGTGCAAGTATGA 59.930 37.037 0.00 0.00 0.00 2.15
4009 4537 7.564793 AGTAGTATTGATGGTGCAAGTATGAA 58.435 34.615 0.00 0.00 0.00 2.57
4010 4538 8.046708 AGTAGTATTGATGGTGCAAGTATGAAA 58.953 33.333 0.00 0.00 0.00 2.69
4011 4539 7.886629 AGTATTGATGGTGCAAGTATGAAAT 57.113 32.000 0.00 0.00 0.00 2.17
4012 4540 8.978874 AGTATTGATGGTGCAAGTATGAAATA 57.021 30.769 0.00 0.00 0.00 1.40
4013 4541 9.407380 AGTATTGATGGTGCAAGTATGAAATAA 57.593 29.630 0.00 0.00 0.00 1.40
4014 4542 9.450807 GTATTGATGGTGCAAGTATGAAATAAC 57.549 33.333 0.00 0.00 0.00 1.89
4032 4953 9.770097 TGAAATAACAAATAAGATGTTGCCAAA 57.230 25.926 2.37 0.00 40.95 3.28
4054 4975 4.982241 TTGACAAAGGAATGGTCTCTCT 57.018 40.909 0.00 0.00 32.84 3.10
4056 4977 4.163427 TGACAAAGGAATGGTCTCTCTCT 58.837 43.478 0.00 0.00 32.84 3.10
4057 4978 4.221703 TGACAAAGGAATGGTCTCTCTCTC 59.778 45.833 0.00 0.00 32.84 3.20
4058 4979 4.163427 ACAAAGGAATGGTCTCTCTCTCA 58.837 43.478 0.00 0.00 0.00 3.27
4059 4980 4.782156 ACAAAGGAATGGTCTCTCTCTCAT 59.218 41.667 0.00 0.00 0.00 2.90
4069 4990 3.870419 GTCTCTCTCTCATGGTCAAATGC 59.130 47.826 0.00 0.00 0.00 3.56
4121 5042 4.838152 CCCGGGATGGACAGTGCG 62.838 72.222 18.48 0.00 42.00 5.34
4123 5044 2.509336 CGGGATGGACAGTGCGTC 60.509 66.667 5.72 5.72 44.57 5.19
4136 5057 2.930040 CAGTGCGTCCTGGTATTAGTTG 59.070 50.000 0.00 0.00 0.00 3.16
4147 5068 3.386726 TGGTATTAGTTGGGGAGATCACG 59.613 47.826 0.00 0.00 0.00 4.35
4153 5074 0.530744 TTGGGGAGATCACGAGTTCG 59.469 55.000 0.00 0.00 46.33 3.95
4177 5098 2.760092 ACCATCATAAACACCACATGGC 59.240 45.455 0.00 0.00 39.32 4.40
4186 5107 3.281727 ACACCACATGGCTGGTATTAG 57.718 47.619 7.63 0.00 43.15 1.73
4192 5113 4.454678 CACATGGCTGGTATTAGTGTGAT 58.545 43.478 0.00 0.00 38.10 3.06
4347 5269 1.849219 GCTCGACACGATTGCTTCTAG 59.151 52.381 0.00 0.00 34.61 2.43
4348 5270 2.478031 GCTCGACACGATTGCTTCTAGA 60.478 50.000 0.00 0.00 34.61 2.43
4353 5275 4.238514 GACACGATTGCTTCTAGAACTGT 58.761 43.478 0.00 0.00 0.00 3.55
4354 5276 5.386958 ACACGATTGCTTCTAGAACTGTA 57.613 39.130 0.00 0.00 0.00 2.74
4355 5277 5.162075 ACACGATTGCTTCTAGAACTGTAC 58.838 41.667 0.00 0.00 0.00 2.90
4356 5278 5.047943 ACACGATTGCTTCTAGAACTGTACT 60.048 40.000 0.00 0.00 0.00 2.73
4357 5279 5.287274 CACGATTGCTTCTAGAACTGTACTG 59.713 44.000 0.00 0.00 0.00 2.74
4358 5280 5.183331 ACGATTGCTTCTAGAACTGTACTGA 59.817 40.000 0.00 0.00 0.00 3.41
4359 5281 5.513495 CGATTGCTTCTAGAACTGTACTGAC 59.487 44.000 0.00 0.82 0.00 3.51
4360 5282 6.597832 ATTGCTTCTAGAACTGTACTGACT 57.402 37.500 0.00 7.84 0.00 3.41
4361 5283 5.630661 TGCTTCTAGAACTGTACTGACTC 57.369 43.478 0.00 3.09 0.00 3.36
4362 5284 4.154375 TGCTTCTAGAACTGTACTGACTCG 59.846 45.833 0.00 2.73 0.00 4.18
4367 5545 2.361119 AGAACTGTACTGACTCGCACAA 59.639 45.455 6.77 0.00 0.00 3.33
4389 5567 2.667473 AAATACTAAGTCGCTGCCGT 57.333 45.000 0.00 0.00 35.54 5.68
4393 5571 0.886563 ACTAAGTCGCTGCCGTACTT 59.113 50.000 12.43 12.43 37.97 2.24
4394 5572 2.086869 ACTAAGTCGCTGCCGTACTTA 58.913 47.619 13.12 13.12 36.72 2.24
4398 5576 1.681793 AGTCGCTGCCGTACTTATGAT 59.318 47.619 0.00 0.00 35.54 2.45
4399 5577 2.882761 AGTCGCTGCCGTACTTATGATA 59.117 45.455 0.00 0.00 35.54 2.15
4402 5580 4.046462 TCGCTGCCGTACTTATGATAAAC 58.954 43.478 0.00 0.00 35.54 2.01
4459 5678 8.947055 AAGTTTGAAAAATGTAAGATGTTGCT 57.053 26.923 0.00 0.00 0.00 3.91
4460 5679 8.356533 AGTTTGAAAAATGTAAGATGTTGCTG 57.643 30.769 0.00 0.00 0.00 4.41
4461 5680 6.768029 TTGAAAAATGTAAGATGTTGCTGC 57.232 33.333 0.00 0.00 0.00 5.25
4764 5987 4.889112 CATGCATGGCCGGCCTCT 62.889 66.667 43.34 28.97 36.94 3.69
4765 5988 4.889112 ATGCATGGCCGGCCTCTG 62.889 66.667 43.34 36.97 36.94 3.35
4790 6013 2.159801 GGTTTTAACGACACCGAATCCG 60.160 50.000 0.00 0.00 39.50 4.18
4916 6140 2.996631 AGCCATAAGAAGAAGCTGTGG 58.003 47.619 0.00 0.00 31.23 4.17
4918 6142 2.356125 GCCATAAGAAGAAGCTGTGGGA 60.356 50.000 0.00 0.00 0.00 4.37
5067 6291 4.643334 GCCCGGTTTGATAAGAAAATAGGT 59.357 41.667 0.00 0.00 0.00 3.08
5169 6393 4.550422 ACAGAGCATGTACTACGCATATG 58.450 43.478 0.00 0.00 41.60 1.78
5245 6469 6.082707 AGAGGGATAAACGATGTATACCCTT 58.917 40.000 0.00 0.00 45.19 3.95
5803 7040 4.409218 GTGACGAGGCGTGGCGTA 62.409 66.667 0.00 0.00 41.37 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 2.420568 CGGCGGCTAGGGTAGACAA 61.421 63.158 7.61 0.00 31.54 3.18
142 143 2.831742 CGGCGGCTAGGGTAGACA 60.832 66.667 7.61 0.00 31.54 3.41
164 165 4.155310 GTGAGAAACCATACAAAACGGG 57.845 45.455 0.00 0.00 0.00 5.28
193 194 2.896854 GGCGGCGCAATGATCTGA 60.897 61.111 34.36 0.00 0.00 3.27
309 311 1.256812 CGCTCCCCAAAAACCTGATT 58.743 50.000 0.00 0.00 0.00 2.57
628 637 6.074544 TCCAAACGACCGAAAAATAAACAT 57.925 33.333 0.00 0.00 0.00 2.71
638 647 3.119779 GCCAATAAATCCAAACGACCGAA 60.120 43.478 0.00 0.00 0.00 4.30
639 648 2.420722 GCCAATAAATCCAAACGACCGA 59.579 45.455 0.00 0.00 0.00 4.69
640 649 2.422127 AGCCAATAAATCCAAACGACCG 59.578 45.455 0.00 0.00 0.00 4.79
641 650 3.192633 ACAGCCAATAAATCCAAACGACC 59.807 43.478 0.00 0.00 0.00 4.79
642 651 4.165779 CACAGCCAATAAATCCAAACGAC 58.834 43.478 0.00 0.00 0.00 4.34
643 652 3.823873 ACACAGCCAATAAATCCAAACGA 59.176 39.130 0.00 0.00 0.00 3.85
644 653 4.173036 ACACAGCCAATAAATCCAAACG 57.827 40.909 0.00 0.00 0.00 3.60
645 654 6.019779 TGTACACAGCCAATAAATCCAAAC 57.980 37.500 0.00 0.00 0.00 2.93
646 655 6.435591 TGATGTACACAGCCAATAAATCCAAA 59.564 34.615 0.00 0.00 0.00 3.28
647 656 5.948758 TGATGTACACAGCCAATAAATCCAA 59.051 36.000 0.00 0.00 0.00 3.53
648 657 5.504853 TGATGTACACAGCCAATAAATCCA 58.495 37.500 0.00 0.00 0.00 3.41
649 658 6.039717 ACATGATGTACACAGCCAATAAATCC 59.960 38.462 0.00 0.00 0.00 3.01
650 659 7.031226 ACATGATGTACACAGCCAATAAATC 57.969 36.000 0.00 0.00 0.00 2.17
651 660 7.408756 AACATGATGTACACAGCCAATAAAT 57.591 32.000 0.00 0.00 0.00 1.40
652 661 6.832520 AACATGATGTACACAGCCAATAAA 57.167 33.333 0.00 0.00 0.00 1.40
653 662 7.468494 GCATAACATGATGTACACAGCCAATAA 60.468 37.037 0.00 0.00 0.00 1.40
654 663 6.017192 GCATAACATGATGTACACAGCCAATA 60.017 38.462 0.00 0.00 0.00 1.90
655 664 5.221106 GCATAACATGATGTACACAGCCAAT 60.221 40.000 0.00 0.00 0.00 3.16
656 665 4.096231 GCATAACATGATGTACACAGCCAA 59.904 41.667 0.00 0.00 0.00 4.52
657 666 3.627123 GCATAACATGATGTACACAGCCA 59.373 43.478 0.00 0.00 0.00 4.75
658 667 3.627123 TGCATAACATGATGTACACAGCC 59.373 43.478 0.00 0.00 0.00 4.85
659 668 4.571984 TCTGCATAACATGATGTACACAGC 59.428 41.667 0.00 0.18 0.00 4.40
660 669 5.235831 CCTCTGCATAACATGATGTACACAG 59.764 44.000 0.00 5.11 0.00 3.66
661 670 5.118286 CCTCTGCATAACATGATGTACACA 58.882 41.667 0.00 0.00 0.00 3.72
662 671 4.512944 CCCTCTGCATAACATGATGTACAC 59.487 45.833 0.00 0.00 0.00 2.90
663 672 4.707105 CCCTCTGCATAACATGATGTACA 58.293 43.478 0.00 0.00 0.00 2.90
664 673 3.499918 GCCCTCTGCATAACATGATGTAC 59.500 47.826 0.00 0.00 40.77 2.90
665 674 3.496692 GGCCCTCTGCATAACATGATGTA 60.497 47.826 0.00 0.00 43.89 2.29
666 675 2.579873 GCCCTCTGCATAACATGATGT 58.420 47.619 0.00 0.00 40.77 3.06
667 676 1.884579 GGCCCTCTGCATAACATGATG 59.115 52.381 0.00 0.00 43.89 3.07
668 677 1.544093 CGGCCCTCTGCATAACATGAT 60.544 52.381 0.00 0.00 43.89 2.45
669 678 0.179048 CGGCCCTCTGCATAACATGA 60.179 55.000 0.00 0.00 43.89 3.07
670 679 1.168407 CCGGCCCTCTGCATAACATG 61.168 60.000 0.00 0.00 43.89 3.21
671 680 1.149174 CCGGCCCTCTGCATAACAT 59.851 57.895 0.00 0.00 43.89 2.71
672 681 2.589540 CCGGCCCTCTGCATAACA 59.410 61.111 0.00 0.00 43.89 2.41
673 682 2.902343 GCCGGCCCTCTGCATAAC 60.902 66.667 18.11 0.00 43.89 1.89
674 683 2.283143 AATGCCGGCCCTCTGCATAA 62.283 55.000 26.77 0.00 44.49 1.90
675 684 2.283143 AAATGCCGGCCCTCTGCATA 62.283 55.000 26.77 0.73 44.49 3.14
677 686 3.884704 AAAATGCCGGCCCTCTGCA 62.885 57.895 26.77 2.60 43.89 4.41
678 687 2.649129 AAAAATGCCGGCCCTCTGC 61.649 57.895 26.77 0.00 40.16 4.26
679 688 3.698765 AAAAATGCCGGCCCTCTG 58.301 55.556 26.77 0.00 0.00 3.35
741 750 9.297037 ACTTATGAGCCTTTACTACATGTTTTT 57.703 29.630 2.30 0.00 0.00 1.94
742 751 8.863872 ACTTATGAGCCTTTACTACATGTTTT 57.136 30.769 2.30 0.00 0.00 2.43
743 752 8.730680 CAACTTATGAGCCTTTACTACATGTTT 58.269 33.333 2.30 0.00 0.00 2.83
744 753 7.883311 ACAACTTATGAGCCTTTACTACATGTT 59.117 33.333 2.30 0.00 0.00 2.71
750 759 6.368779 ACCACAACTTATGAGCCTTTACTA 57.631 37.500 0.00 0.00 0.00 1.82
772 781 7.370383 TGCATCTGAGTAAATTTTGGAAGAAC 58.630 34.615 0.00 0.00 0.00 3.01
777 786 7.523293 TTTCTGCATCTGAGTAAATTTTGGA 57.477 32.000 0.00 0.00 0.00 3.53
780 789 8.800332 AGTCATTTCTGCATCTGAGTAAATTTT 58.200 29.630 0.00 0.00 0.00 1.82
792 801 6.094719 TGTGCATTTTAGTCATTTCTGCATC 58.905 36.000 0.00 0.00 39.94 3.91
835 844 5.759506 TCAAATCAAAACGTGTGTATGGT 57.240 34.783 0.00 0.00 0.00 3.55
843 852 5.439828 TCGTTGAGATCAAATCAAAACGTG 58.560 37.500 18.33 0.00 44.05 4.49
850 859 9.773328 GTGAATTTAATCGTTGAGATCAAATCA 57.227 29.630 0.00 0.00 36.44 2.57
865 874 3.303791 GCCGTCCGGATGTGAATTTAATC 60.304 47.826 22.05 0.00 37.50 1.75
867 876 2.011222 GCCGTCCGGATGTGAATTTAA 58.989 47.619 22.05 0.00 37.50 1.52
906 915 4.082523 GCTAGGCGCACTCCACCA 62.083 66.667 10.83 0.00 38.92 4.17
961 970 4.080526 GGAGGTATTTAAAGTGGGCAGAGA 60.081 45.833 0.00 0.00 0.00 3.10
1053 1065 2.350522 CTGCTGGTGTTTAGTGGCTAG 58.649 52.381 0.00 0.00 0.00 3.42
1054 1066 1.610624 GCTGCTGGTGTTTAGTGGCTA 60.611 52.381 0.00 0.00 0.00 3.93
1055 1067 0.890996 GCTGCTGGTGTTTAGTGGCT 60.891 55.000 0.00 0.00 0.00 4.75
1062 1074 1.228367 CTCCCTGCTGCTGGTGTTT 60.228 57.895 21.89 0.00 0.00 2.83
1068 1080 0.464013 CTGATTCCTCCCTGCTGCTG 60.464 60.000 0.00 0.00 0.00 4.41
1373 1393 3.561725 GCGAGGAAATTAAGATGAGGTGG 59.438 47.826 0.00 0.00 0.00 4.61
1379 1399 5.049129 GGAATCAGGCGAGGAAATTAAGATG 60.049 44.000 0.00 0.00 0.00 2.90
1380 1400 5.066593 GGAATCAGGCGAGGAAATTAAGAT 58.933 41.667 0.00 0.00 0.00 2.40
1381 1401 4.164221 AGGAATCAGGCGAGGAAATTAAGA 59.836 41.667 0.00 0.00 0.00 2.10
1382 1402 4.455606 AGGAATCAGGCGAGGAAATTAAG 58.544 43.478 0.00 0.00 0.00 1.85
1401 1452 3.365472 TGCATGCTACTAACTGAGAGGA 58.635 45.455 20.33 0.00 0.00 3.71
1466 1529 1.229625 TGGAGGCTGGAGTGGACAT 60.230 57.895 0.00 0.00 0.00 3.06
1467 1530 2.204034 TGGAGGCTGGAGTGGACA 59.796 61.111 0.00 0.00 0.00 4.02
1468 1531 2.665603 GTGGAGGCTGGAGTGGAC 59.334 66.667 0.00 0.00 0.00 4.02
1496 1559 0.390340 CATGACCGGTGAGACAGTGG 60.390 60.000 14.63 0.00 0.00 4.00
1509 1572 1.827969 AGACAGTGACTAGCCATGACC 59.172 52.381 0.00 0.00 0.00 4.02
1600 1696 7.416817 CGCAAAAAGGAAAAAGGAAATTTCAT 58.583 30.769 19.49 10.18 38.29 2.57
1601 1697 6.676700 GCGCAAAAAGGAAAAAGGAAATTTCA 60.677 34.615 19.49 0.00 38.29 2.69
1640 1737 3.534056 CCGTACCTAGTGGCCGGG 61.534 72.222 2.18 0.00 43.37 5.73
1645 1742 0.892755 TGAACAGCCGTACCTAGTGG 59.107 55.000 0.00 0.00 39.83 4.00
1646 1743 1.271379 TGTGAACAGCCGTACCTAGTG 59.729 52.381 0.00 0.00 0.00 2.74
1647 1744 1.624336 TGTGAACAGCCGTACCTAGT 58.376 50.000 0.00 0.00 0.00 2.57
1648 1745 2.930040 CAATGTGAACAGCCGTACCTAG 59.070 50.000 0.00 0.00 0.00 3.02
1649 1746 2.933492 GCAATGTGAACAGCCGTACCTA 60.933 50.000 0.00 0.00 0.00 3.08
1650 1747 1.808411 CAATGTGAACAGCCGTACCT 58.192 50.000 0.00 0.00 0.00 3.08
1658 1755 1.081242 GCCACCGCAATGTGAACAG 60.081 57.895 0.00 0.00 38.55 3.16
1724 1823 0.037882 CTCGGTGGATCGATCCCATG 60.038 60.000 35.72 25.49 46.59 3.66
1737 1836 1.656652 CTAGAACAATGGGCTCGGTG 58.343 55.000 0.00 0.00 0.00 4.94
1739 1838 0.179000 AGCTAGAACAATGGGCTCGG 59.821 55.000 0.00 0.00 0.00 4.63
1770 1869 2.217847 CGTCGTGTGAAAACCAGTAGTG 59.782 50.000 0.00 0.00 0.00 2.74
1795 1900 5.602978 ACATCCAGAGGGTAATAAGGTACAG 59.397 44.000 0.00 0.00 34.93 2.74
1812 1917 2.012051 GCCGGGTTACTCAACATCCAG 61.012 57.143 2.18 0.00 36.29 3.86
1863 1992 2.169832 ACTACAACTGAGCATGCGTT 57.830 45.000 13.01 7.87 0.00 4.84
1955 2088 4.090588 ATCGCTTCCCGGCCGAAA 62.091 61.111 30.73 19.41 37.59 3.46
1977 2110 1.672881 GCTGCTGTGGTGGCTAATTAG 59.327 52.381 8.20 8.20 0.00 1.73
1978 2111 1.004161 TGCTGCTGTGGTGGCTAATTA 59.996 47.619 0.00 0.00 0.00 1.40
1979 2112 0.251297 TGCTGCTGTGGTGGCTAATT 60.251 50.000 0.00 0.00 0.00 1.40
1991 2124 3.351416 TGCGCTGAACTGCTGCTG 61.351 61.111 9.73 4.89 39.10 4.41
1993 2137 3.590443 CTGTGCGCTGAACTGCTGC 62.590 63.158 9.73 0.00 38.02 5.25
2006 2150 1.546476 ACTACTACTCCTGCACTGTGC 59.454 52.381 25.15 25.15 45.29 4.57
2007 2151 3.944055 AACTACTACTCCTGCACTGTG 57.056 47.619 2.76 2.76 0.00 3.66
2009 2153 5.140747 AGAAAACTACTACTCCTGCACTG 57.859 43.478 0.00 0.00 0.00 3.66
2021 2165 9.140286 GCAGTCAAAAAGAAAAAGAAAACTACT 57.860 29.630 0.00 0.00 0.00 2.57
2022 2166 8.921670 TGCAGTCAAAAAGAAAAAGAAAACTAC 58.078 29.630 0.00 0.00 0.00 2.73
2023 2167 9.139174 CTGCAGTCAAAAAGAAAAAGAAAACTA 57.861 29.630 5.25 0.00 0.00 2.24
2024 2168 7.118245 CCTGCAGTCAAAAAGAAAAAGAAAACT 59.882 33.333 13.81 0.00 0.00 2.66
2025 2169 7.117667 TCCTGCAGTCAAAAAGAAAAAGAAAAC 59.882 33.333 13.81 0.00 0.00 2.43
2026 2170 7.158021 TCCTGCAGTCAAAAAGAAAAAGAAAA 58.842 30.769 13.81 0.00 0.00 2.29
2027 2171 6.696411 TCCTGCAGTCAAAAAGAAAAAGAAA 58.304 32.000 13.81 0.00 0.00 2.52
2028 2172 6.071391 ACTCCTGCAGTCAAAAAGAAAAAGAA 60.071 34.615 13.81 0.00 0.00 2.52
2029 2173 5.418840 ACTCCTGCAGTCAAAAAGAAAAAGA 59.581 36.000 13.81 0.00 0.00 2.52
2030 2174 5.654497 ACTCCTGCAGTCAAAAAGAAAAAG 58.346 37.500 13.81 0.00 0.00 2.27
2033 2177 5.437060 ACTACTCCTGCAGTCAAAAAGAAA 58.563 37.500 13.81 0.00 36.43 2.52
2034 2178 5.036117 ACTACTCCTGCAGTCAAAAAGAA 57.964 39.130 13.81 0.00 36.43 2.52
2035 2179 4.689612 ACTACTCCTGCAGTCAAAAAGA 57.310 40.909 13.81 0.00 36.43 2.52
2037 2181 4.755123 GCTAACTACTCCTGCAGTCAAAAA 59.245 41.667 13.81 0.00 36.43 1.94
2038 2182 4.315803 GCTAACTACTCCTGCAGTCAAAA 58.684 43.478 13.81 0.00 36.43 2.44
2056 2236 2.047655 CGGTGGTTGCTCCGCTAA 60.048 61.111 10.74 0.00 45.32 3.09
2061 2241 0.814010 ATTATCGCGGTGGTTGCTCC 60.814 55.000 6.13 0.00 0.00 4.70
2073 2260 3.058155 TCTCGTCTCTGGCTAATTATCGC 60.058 47.826 0.00 0.00 0.00 4.58
2077 2264 2.623889 GCCTCTCGTCTCTGGCTAATTA 59.376 50.000 0.00 0.00 41.92 1.40
2080 2268 1.377366 CGCCTCTCGTCTCTGGCTAA 61.377 60.000 0.00 0.00 42.90 3.09
2083 2271 3.134792 TCGCCTCTCGTCTCTGGC 61.135 66.667 0.00 0.00 41.76 4.85
2103 2291 0.246360 TCCTCCGTGACGACGTACTA 59.754 55.000 6.54 0.00 44.54 1.82
2104 2292 0.603707 TTCCTCCGTGACGACGTACT 60.604 55.000 6.54 0.00 44.54 2.73
2105 2293 0.238289 TTTCCTCCGTGACGACGTAC 59.762 55.000 6.54 0.00 44.54 3.67
2128 2319 4.441495 GGATAAAATGGCCTTTAAAGCGCT 60.441 41.667 20.76 2.64 0.00 5.92
2129 2320 3.802139 GGATAAAATGGCCTTTAAAGCGC 59.198 43.478 9.86 13.59 0.00 5.92
2130 2321 4.368315 GGGATAAAATGGCCTTTAAAGCG 58.632 43.478 9.86 4.69 0.00 4.68
2131 2322 4.444306 GGGGGATAAAATGGCCTTTAAAGC 60.444 45.833 9.86 5.51 0.00 3.51
2132 2323 4.968719 AGGGGGATAAAATGGCCTTTAAAG 59.031 41.667 3.32 8.32 0.00 1.85
2133 2324 4.719273 CAGGGGGATAAAATGGCCTTTAAA 59.281 41.667 3.32 0.00 0.00 1.52
2246 2437 1.645455 CGTCTACATGCATGCAGGC 59.355 57.895 30.68 22.90 0.00 4.85
2247 2438 1.162181 CCCGTCTACATGCATGCAGG 61.162 60.000 29.33 29.33 0.00 4.85
2248 2439 1.779025 GCCCGTCTACATGCATGCAG 61.779 60.000 26.69 22.73 0.00 4.41
2249 2440 1.819208 GCCCGTCTACATGCATGCA 60.819 57.895 26.53 25.04 0.00 3.96
2256 2447 2.735772 CCTGCCTGCCCGTCTACAT 61.736 63.158 0.00 0.00 0.00 2.29
2274 2465 3.119096 GGAGTTTCACGGCCGAGC 61.119 66.667 35.90 12.21 0.00 5.03
2276 2467 0.953471 CAATGGAGTTTCACGGCCGA 60.953 55.000 35.90 7.50 0.00 5.54
2277 2468 0.953471 TCAATGGAGTTTCACGGCCG 60.953 55.000 26.86 26.86 0.00 6.13
2297 2488 2.029970 GGTACGTACGCACCATTGATTG 59.970 50.000 28.77 0.00 34.77 2.67
2301 2492 2.187707 GTAGGTACGTACGCACCATTG 58.812 52.381 33.32 0.00 37.28 2.82
2318 2509 0.249489 GGACAGGCCAGCATACGTAG 60.249 60.000 5.01 0.00 36.34 3.51
2321 2512 2.203070 GGGACAGGCCAGCATACG 60.203 66.667 5.01 0.00 38.95 3.06
2323 2514 0.837272 GTAAGGGACAGGCCAGCATA 59.163 55.000 5.01 0.00 38.95 3.14
2328 2519 1.923395 CAGGGTAAGGGACAGGCCA 60.923 63.158 5.01 0.00 38.95 5.36
2331 2522 0.839946 CCATCAGGGTAAGGGACAGG 59.160 60.000 0.00 0.00 0.00 4.00
2343 2534 1.970114 GCGATGCCATCCCATCAGG 60.970 63.158 0.00 0.00 41.27 3.86
2344 2535 1.228033 TGCGATGCCATCCCATCAG 60.228 57.895 0.00 0.00 41.27 2.90
2345 2536 1.228033 CTGCGATGCCATCCCATCA 60.228 57.895 0.00 0.00 41.27 3.07
2346 2537 2.623915 GCTGCGATGCCATCCCATC 61.624 63.158 0.00 0.00 38.55 3.51
2347 2538 2.596631 GCTGCGATGCCATCCCAT 60.597 61.111 0.00 0.00 0.00 4.00
2364 2555 2.809601 CGTTTCACCTCGCTCCCG 60.810 66.667 0.00 0.00 0.00 5.14
2365 2556 2.434359 CCGTTTCACCTCGCTCCC 60.434 66.667 0.00 0.00 0.00 4.30
2366 2557 1.880819 TACCCGTTTCACCTCGCTCC 61.881 60.000 0.00 0.00 0.00 4.70
2367 2558 0.458025 CTACCCGTTTCACCTCGCTC 60.458 60.000 0.00 0.00 0.00 5.03
2368 2559 1.590147 CTACCCGTTTCACCTCGCT 59.410 57.895 0.00 0.00 0.00 4.93
2369 2560 2.098831 GCTACCCGTTTCACCTCGC 61.099 63.158 0.00 0.00 0.00 5.03
2370 2561 0.736325 CTGCTACCCGTTTCACCTCG 60.736 60.000 0.00 0.00 0.00 4.63
2387 2581 1.202533 ACACTTGTCGTTCTCCACCTG 60.203 52.381 0.00 0.00 0.00 4.00
2391 2585 1.538204 GCTCACACTTGTCGTTCTCCA 60.538 52.381 0.00 0.00 0.00 3.86
2401 2595 2.849007 CGAGCACGCTCACACTTG 59.151 61.111 18.54 0.00 42.86 3.16
2418 2618 2.233654 CGACGATGCCTGCTACTGC 61.234 63.158 0.00 0.00 40.20 4.40
2495 2705 4.608948 AGGTAGGTTATATGCAGTCAGC 57.391 45.455 0.00 0.00 45.96 4.26
2695 2918 4.874970 GGCTTCAATGCCGATCATAAATT 58.125 39.130 0.00 0.00 43.74 1.82
2759 2986 8.567948 GTTAAATGTGGAGAGAAACAATGAAGA 58.432 33.333 0.00 0.00 0.00 2.87
2821 3052 0.836606 TTGGTCCAGTCTTGACTGCA 59.163 50.000 21.51 13.28 36.46 4.41
2822 3053 1.230324 GTTGGTCCAGTCTTGACTGC 58.770 55.000 21.51 11.23 36.46 4.40
2825 3056 1.068741 ACTCGTTGGTCCAGTCTTGAC 59.931 52.381 0.00 0.00 0.00 3.18
2826 3057 1.068588 CACTCGTTGGTCCAGTCTTGA 59.931 52.381 0.00 0.00 0.00 3.02
2827 3058 1.502231 CACTCGTTGGTCCAGTCTTG 58.498 55.000 0.00 0.00 0.00 3.02
2828 3059 0.249911 GCACTCGTTGGTCCAGTCTT 60.250 55.000 0.00 0.00 0.00 3.01
2829 3060 1.367840 GCACTCGTTGGTCCAGTCT 59.632 57.895 0.00 0.00 0.00 3.24
2830 3061 0.320771 ATGCACTCGTTGGTCCAGTC 60.321 55.000 0.00 0.00 0.00 3.51
2860 3091 8.663025 GGGTTAGCTTTTCAATTGTACTACTAC 58.337 37.037 5.13 0.00 0.00 2.73
2861 3092 8.377034 TGGGTTAGCTTTTCAATTGTACTACTA 58.623 33.333 5.13 1.31 0.00 1.82
2890 3121 4.260985 TGTACATGTTACAGCCTTGATGG 58.739 43.478 2.30 0.00 39.35 3.51
2947 3178 2.035961 CAGCACACCACTACTACTGTGT 59.964 50.000 0.00 0.00 42.34 3.72
2948 3179 2.296190 TCAGCACACCACTACTACTGTG 59.704 50.000 0.00 0.00 37.63 3.66
2949 3180 2.594131 TCAGCACACCACTACTACTGT 58.406 47.619 0.00 0.00 0.00 3.55
2950 3181 3.193479 TGATCAGCACACCACTACTACTG 59.807 47.826 0.00 0.00 0.00 2.74
2951 3182 3.193691 GTGATCAGCACACCACTACTACT 59.806 47.826 0.00 0.00 46.91 2.57
2952 3183 3.512680 GTGATCAGCACACCACTACTAC 58.487 50.000 0.00 0.00 46.91 2.73
2953 3184 3.868757 GTGATCAGCACACCACTACTA 57.131 47.619 0.00 0.00 46.91 1.82
3008 3239 1.468520 CTGTAACAGGCAACCATTCCG 59.531 52.381 0.00 0.00 37.17 4.30
3160 3391 4.111916 ACGAAAGCAAACAAATGACAAGG 58.888 39.130 0.00 0.00 0.00 3.61
3184 3415 6.194796 AGACAAACATGTTGTATGTATGCC 57.805 37.500 12.82 1.50 31.96 4.40
3196 3427 3.541632 ACGAACAAGGAGACAAACATGT 58.458 40.909 0.00 0.00 0.00 3.21
3229 3460 0.739462 CGTGATAGCCGAAAGCCACA 60.739 55.000 0.00 0.00 45.47 4.17
3265 3496 3.125146 TGTCAAGAGCGACAAACATATGC 59.875 43.478 1.58 0.00 42.82 3.14
3266 3497 4.389992 AGTGTCAAGAGCGACAAACATATG 59.610 41.667 0.00 0.00 46.99 1.78
3272 3503 2.595124 TGAGTGTCAAGAGCGACAAA 57.405 45.000 0.00 0.00 46.99 2.83
3329 3818 6.314152 TGGCAAATGCATGAATTTTGTGATAG 59.686 34.615 9.08 0.00 44.36 2.08
3359 3848 6.000840 TGTCAGTAAATCCATGCAGTTTACA 58.999 36.000 19.78 7.31 39.54 2.41
3385 3879 9.462606 TGTAGAGAAAAAGGAAAAGAAGTTCTT 57.537 29.630 12.50 12.50 38.59 2.52
3436 3931 9.530633 GTAAAGGTCAGTATTATGGACAGTAAG 57.469 37.037 0.00 0.00 33.26 2.34
3452 3947 7.044798 CCCTCTTTTATCTCTGTAAAGGTCAG 58.955 42.308 0.00 0.00 31.45 3.51
3453 3948 6.070194 CCCCTCTTTTATCTCTGTAAAGGTCA 60.070 42.308 0.00 0.00 31.45 4.02
3454 3949 6.156429 TCCCCTCTTTTATCTCTGTAAAGGTC 59.844 42.308 0.00 0.00 31.45 3.85
3456 3951 6.561519 TCCCCTCTTTTATCTCTGTAAAGG 57.438 41.667 0.00 0.00 31.45 3.11
3457 3952 8.731605 GTTTTCCCCTCTTTTATCTCTGTAAAG 58.268 37.037 0.00 0.00 0.00 1.85
3458 3953 8.445588 AGTTTTCCCCTCTTTTATCTCTGTAAA 58.554 33.333 0.00 0.00 0.00 2.01
3461 3956 6.455690 AGTTTTCCCCTCTTTTATCTCTGT 57.544 37.500 0.00 0.00 0.00 3.41
3473 3968 3.418684 TCAAGCAGTAGTTTTCCCCTC 57.581 47.619 0.00 0.00 0.00 4.30
3520 4048 3.909995 TCTCTAGGATCAGAGGAGAGGAG 59.090 52.174 9.54 0.00 42.05 3.69
3521 4049 3.948126 TCTCTAGGATCAGAGGAGAGGA 58.052 50.000 9.54 0.00 42.05 3.71
3522 4050 4.934797 ATCTCTAGGATCAGAGGAGAGG 57.065 50.000 9.54 0.00 42.05 3.69
3523 4051 8.992349 TCTATAATCTCTAGGATCAGAGGAGAG 58.008 40.741 9.54 6.33 42.05 3.20
3524 4052 8.925447 TCTATAATCTCTAGGATCAGAGGAGA 57.075 38.462 9.54 9.02 42.05 3.71
3533 4061 9.600432 GATAGCCCAATCTATAATCTCTAGGAT 57.400 37.037 0.00 0.00 31.14 3.24
3580 4108 3.528370 AGTACCGCGGCAGCTAGG 61.528 66.667 28.58 4.12 42.32 3.02
3589 4117 2.871133 TCTGATACAAACAGTACCGCG 58.129 47.619 0.00 0.00 35.05 6.46
3592 4120 6.147328 GGACAAGTTCTGATACAAACAGTACC 59.853 42.308 0.00 0.00 36.70 3.34
3608 4136 3.251571 GACCTGATGTACGGACAAGTTC 58.748 50.000 3.58 0.00 39.59 3.01
3631 4159 4.990426 TGGCTATGTGTTGATCGTGATATG 59.010 41.667 0.00 0.00 0.00 1.78
3639 4167 5.104374 CCAAAATGTGGCTATGTGTTGATC 58.896 41.667 0.00 0.00 41.72 2.92
3717 4245 4.021192 CCAACCACAAATATTGCTGGTCTT 60.021 41.667 14.76 1.97 41.17 3.01
3723 4251 3.505386 TCACCCAACCACAAATATTGCT 58.495 40.909 0.00 0.00 0.00 3.91
3724 4252 3.951775 TCACCCAACCACAAATATTGC 57.048 42.857 0.00 0.00 0.00 3.56
3728 4256 3.904717 ACTGTTCACCCAACCACAAATA 58.095 40.909 0.00 0.00 33.51 1.40
3729 4257 2.745968 ACTGTTCACCCAACCACAAAT 58.254 42.857 0.00 0.00 33.51 2.32
3801 4329 6.429692 TCATCATGGTTTGTACTTTGTACCAG 59.570 38.462 0.00 0.00 41.75 4.00
3802 4330 6.299922 TCATCATGGTTTGTACTTTGTACCA 58.700 36.000 0.00 0.00 42.57 3.25
3803 4331 6.811253 TCATCATGGTTTGTACTTTGTACC 57.189 37.500 5.55 0.00 0.00 3.34
3804 4332 7.064134 TCGATCATCATGGTTTGTACTTTGTAC 59.936 37.037 0.00 1.33 0.00 2.90
3805 4333 7.064134 GTCGATCATCATGGTTTGTACTTTGTA 59.936 37.037 0.00 0.00 0.00 2.41
3806 4334 5.937540 TCGATCATCATGGTTTGTACTTTGT 59.062 36.000 0.00 0.00 0.00 2.83
3807 4335 6.092670 AGTCGATCATCATGGTTTGTACTTTG 59.907 38.462 0.00 0.00 0.00 2.77
3810 4338 5.344743 AGTCGATCATCATGGTTTGTACT 57.655 39.130 0.00 0.00 0.00 2.73
3811 4339 4.508124 GGAGTCGATCATCATGGTTTGTAC 59.492 45.833 0.00 0.00 0.00 2.90
3818 4346 1.001746 CAGGGGAGTCGATCATCATGG 59.998 57.143 0.00 0.00 0.00 3.66
3827 4355 2.650116 GCAGAAGCAGGGGAGTCGA 61.650 63.158 0.00 0.00 41.58 4.20
3828 4356 2.125350 GCAGAAGCAGGGGAGTCG 60.125 66.667 0.00 0.00 41.58 4.18
3859 4387 2.658268 GCAACCGTTTGGCTGTGC 60.658 61.111 0.00 0.00 39.70 4.57
3864 4392 1.370051 GTTCGAGCAACCGTTTGGC 60.370 57.895 0.00 0.00 39.70 4.52
3865 4393 0.591170 ATGTTCGAGCAACCGTTTGG 59.409 50.000 5.91 0.00 42.84 3.28
3866 4394 2.478894 AGTATGTTCGAGCAACCGTTTG 59.521 45.455 5.91 0.00 33.51 2.93
3867 4395 2.735134 GAGTATGTTCGAGCAACCGTTT 59.265 45.455 5.91 0.00 33.51 3.60
3868 4396 2.334838 GAGTATGTTCGAGCAACCGTT 58.665 47.619 5.91 0.00 33.51 4.44
3869 4397 1.403780 GGAGTATGTTCGAGCAACCGT 60.404 52.381 5.91 0.00 33.51 4.83
3870 4398 1.278238 GGAGTATGTTCGAGCAACCG 58.722 55.000 5.91 0.00 33.51 4.44
3871 4399 2.380084 TGGAGTATGTTCGAGCAACC 57.620 50.000 5.91 8.38 33.51 3.77
3872 4400 2.030946 GCATGGAGTATGTTCGAGCAAC 59.969 50.000 5.91 6.29 39.08 4.17
3873 4401 2.279741 GCATGGAGTATGTTCGAGCAA 58.720 47.619 5.91 0.00 39.08 3.91
3874 4402 1.473257 GGCATGGAGTATGTTCGAGCA 60.473 52.381 3.86 3.86 39.08 4.26
3875 4403 1.221414 GGCATGGAGTATGTTCGAGC 58.779 55.000 0.00 0.00 39.08 5.03
3876 4404 2.602257 TGGCATGGAGTATGTTCGAG 57.398 50.000 0.00 0.00 39.08 4.04
3877 4405 2.627945 GTTGGCATGGAGTATGTTCGA 58.372 47.619 0.00 0.00 39.08 3.71
3878 4406 1.327460 CGTTGGCATGGAGTATGTTCG 59.673 52.381 0.00 0.00 39.08 3.95
3879 4407 1.064060 GCGTTGGCATGGAGTATGTTC 59.936 52.381 0.00 0.00 39.08 3.18
3880 4408 1.094785 GCGTTGGCATGGAGTATGTT 58.905 50.000 0.00 0.00 39.08 2.71
3881 4409 0.035534 TGCGTTGGCATGGAGTATGT 60.036 50.000 0.00 0.00 46.21 2.29
3895 4423 0.680921 ATGCATAACAGCCCTGCGTT 60.681 50.000 0.00 0.00 38.75 4.84
3898 4426 1.066605 CAGAATGCATAACAGCCCTGC 59.933 52.381 0.00 0.00 36.45 4.85
3916 4444 4.579869 ACATAAGTAAAGGGTCACTGCAG 58.420 43.478 13.48 13.48 0.00 4.41
3979 4507 7.212976 ACTTGCACCATCAATACTACTCTATG 58.787 38.462 0.00 0.00 0.00 2.23
3983 4511 7.210174 TCATACTTGCACCATCAATACTACTC 58.790 38.462 0.00 0.00 0.00 2.59
4032 4953 5.250313 AGAGAGAGACCATTCCTTTGTCAAT 59.750 40.000 0.00 0.00 0.00 2.57
4034 4955 4.163427 AGAGAGAGACCATTCCTTTGTCA 58.837 43.478 0.00 0.00 0.00 3.58
4054 4975 1.338960 TGCTCGCATTTGACCATGAGA 60.339 47.619 0.00 0.00 32.69 3.27
4056 4977 1.402613 CATGCTCGCATTTGACCATGA 59.597 47.619 0.85 0.00 33.90 3.07
4057 4978 1.133598 ACATGCTCGCATTTGACCATG 59.866 47.619 0.85 0.00 36.90 3.66
4058 4979 1.133598 CACATGCTCGCATTTGACCAT 59.866 47.619 11.52 0.00 36.52 3.55
4059 4980 0.522626 CACATGCTCGCATTTGACCA 59.477 50.000 11.52 0.00 36.52 4.02
4121 5042 3.381335 TCTCCCCAACTAATACCAGGAC 58.619 50.000 0.00 0.00 0.00 3.85
4123 5044 3.973973 TGATCTCCCCAACTAATACCAGG 59.026 47.826 0.00 0.00 0.00 4.45
4136 5057 1.035932 TCCGAACTCGTGATCTCCCC 61.036 60.000 0.00 0.00 37.74 4.81
4147 5068 4.094442 GGTGTTTATGATGGTTCCGAACTC 59.906 45.833 11.03 2.79 0.00 3.01
4153 5074 4.142182 CCATGTGGTGTTTATGATGGTTCC 60.142 45.833 0.00 0.00 0.00 3.62
4177 5098 3.313526 GCTTGGCATCACACTAATACCAG 59.686 47.826 0.00 0.00 0.00 4.00
4186 5107 2.345760 CCAGGGCTTGGCATCACAC 61.346 63.158 1.44 0.00 40.87 3.82
4347 5269 2.417339 TGTGCGAGTCAGTACAGTTC 57.583 50.000 0.00 0.00 33.06 3.01
4348 5270 2.882927 TTGTGCGAGTCAGTACAGTT 57.117 45.000 0.00 0.00 37.96 3.16
4382 5560 5.986004 AAGTTTATCATAAGTACGGCAGC 57.014 39.130 0.00 0.00 0.00 5.25
4438 5657 5.401972 CGCAGCAACATCTTACATTTTTCAA 59.598 36.000 0.00 0.00 0.00 2.69
4460 5679 3.807538 CCATCACCTGCTGCACGC 61.808 66.667 0.00 1.70 39.77 5.34
4461 5680 3.807538 GCCATCACCTGCTGCACG 61.808 66.667 0.00 0.00 0.00 5.34
4466 5685 2.184322 CGTACGCCATCACCTGCT 59.816 61.111 0.52 0.00 0.00 4.24
4751 5974 1.524621 CTAACAGAGGCCGGCCATG 60.525 63.158 45.13 39.99 38.92 3.66
4752 5975 2.746375 CCTAACAGAGGCCGGCCAT 61.746 63.158 45.13 31.33 38.96 4.40
4753 5976 3.399181 CCTAACAGAGGCCGGCCA 61.399 66.667 45.13 24.22 38.96 5.36
4760 5983 8.877740 TCGGTGTCGTTAAAACCTAACAGAGG 62.878 46.154 0.00 0.00 43.58 3.69
4761 5984 4.149396 CGGTGTCGTTAAAACCTAACAGAG 59.851 45.833 0.00 0.00 0.00 3.35
4762 5985 4.050553 CGGTGTCGTTAAAACCTAACAGA 58.949 43.478 0.00 0.00 0.00 3.41
4763 5986 4.050553 TCGGTGTCGTTAAAACCTAACAG 58.949 43.478 0.00 0.00 37.69 3.16
4764 5987 4.052159 TCGGTGTCGTTAAAACCTAACA 57.948 40.909 0.00 0.00 37.69 2.41
4765 5988 5.389830 GGATTCGGTGTCGTTAAAACCTAAC 60.390 44.000 0.00 0.00 37.69 2.34
4790 6013 0.397254 TCTCTCCCCGGACTGGATTC 60.397 60.000 0.73 0.00 42.00 2.52
4827 6050 1.519455 GAGCGACGGCAGCTACATT 60.519 57.895 7.59 0.00 46.13 2.71
4916 6140 1.275573 ACCGGTCTAGCTTTTGTCTCC 59.724 52.381 0.00 0.00 0.00 3.71
4918 6142 3.071167 AGAAACCGGTCTAGCTTTTGTCT 59.929 43.478 8.04 0.00 0.00 3.41
4988 6212 7.096147 GCTCCTCTTTTATTACGCACATAGTAC 60.096 40.741 0.00 0.00 0.00 2.73
4990 6214 5.753921 GCTCCTCTTTTATTACGCACATAGT 59.246 40.000 0.00 0.00 0.00 2.12
5867 7104 7.184753 AGTGGTTTATAAGGGATTCTCTTCCTT 59.815 37.037 1.02 0.00 42.79 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.