Multiple sequence alignment - TraesCS4A01G042700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G042700 chr4A 100.000 3300 0 0 1 3300 35875625 35878924 0.000000e+00 6095.0
1 TraesCS4A01G042700 chr4A 90.909 176 8 6 2322 2495 13582715 13582546 2.560000e-56 230.0
2 TraesCS4A01G042700 chr4A 87.151 179 15 5 2324 2495 620389258 620389081 2.600000e-46 196.0
3 TraesCS4A01G042700 chr4D 91.890 2355 106 34 1 2324 434317376 434319676 0.000000e+00 3212.0
4 TraesCS4A01G042700 chr4D 94.498 309 17 0 2733 3041 434319758 434320066 8.280000e-131 477.0
5 TraesCS4A01G042700 chr4D 94.498 309 17 0 2733 3041 434320377 434320685 8.280000e-131 477.0
6 TraesCS4A01G042700 chr4D 88.596 114 13 0 2598 2711 489780681 489780568 4.440000e-29 139.0
7 TraesCS4A01G042700 chr4B 92.308 1339 59 11 786 2124 533723162 533724456 0.000000e+00 1862.0
8 TraesCS4A01G042700 chr4B 91.132 733 35 12 1 728 533722100 533722807 0.000000e+00 966.0
9 TraesCS4A01G042700 chr4B 86.268 284 23 8 1135 1402 94841303 94841586 8.960000e-76 294.0
10 TraesCS4A01G042700 chr4B 89.017 173 14 4 2324 2495 406463703 406463871 3.340000e-50 209.0
11 TraesCS4A01G042700 chr4B 89.474 133 9 4 2157 2286 533724453 533724583 2.630000e-36 163.0
12 TraesCS4A01G042700 chr4B 100.000 33 0 0 1578 1610 94841586 94841618 9.890000e-06 62.1
13 TraesCS4A01G042700 chr7D 93.156 263 17 1 3038 3300 175663740 175664001 5.170000e-103 385.0
14 TraesCS4A01G042700 chr7D 92.776 263 18 1 3038 3300 420900841 420900580 2.400000e-101 379.0
15 TraesCS4A01G042700 chr7D 92.395 263 20 0 3038 3300 332186907 332186645 3.110000e-100 375.0
16 TraesCS4A01G042700 chr7D 91.635 263 21 1 3038 3300 568025585 568025846 2.420000e-96 363.0
17 TraesCS4A01G042700 chr6B 91.667 264 22 0 3037 3300 595947451 595947714 1.870000e-97 366.0
18 TraesCS4A01G042700 chr6B 87.640 178 12 7 2320 2494 706113263 706113433 7.220000e-47 198.0
19 TraesCS4A01G042700 chr5B 91.255 263 21 2 3038 3300 426998156 426997896 1.130000e-94 357.0
20 TraesCS4A01G042700 chr6D 90.672 268 18 6 3038 3300 439406636 439406901 1.880000e-92 350.0
21 TraesCS4A01G042700 chr6D 88.966 145 14 2 2733 2877 269740055 269740197 9.410000e-41 178.0
22 TraesCS4A01G042700 chr6D 85.714 77 9 2 2740 2814 363874850 363874774 2.730000e-11 80.5
23 TraesCS4A01G042700 chr2A 84.015 269 35 6 3038 3300 323511037 323511303 5.470000e-63 252.0
24 TraesCS4A01G042700 chr2A 88.372 172 14 3 2324 2494 19616575 19616741 5.580000e-48 202.0
25 TraesCS4A01G042700 chr2A 85.714 126 7 6 2918 3032 765629999 765630124 4.470000e-24 122.0
26 TraesCS4A01G042700 chr7A 83.704 270 38 4 3036 3300 625182842 625183110 1.970000e-62 250.0
27 TraesCS4A01G042700 chr7A 84.058 138 14 3 2597 2729 105266472 105266606 3.460000e-25 126.0
28 TraesCS4A01G042700 chr7A 84.536 97 11 2 2748 2844 580495036 580494944 3.510000e-15 93.5
29 TraesCS4A01G042700 chr7A 94.000 50 3 0 2922 2971 725327915 725327866 3.530000e-10 76.8
30 TraesCS4A01G042700 chr5A 94.771 153 7 1 2323 2474 29678149 29678301 1.530000e-58 237.0
31 TraesCS4A01G042700 chr5A 93.506 154 6 4 2322 2473 71460388 71460237 3.310000e-55 226.0
32 TraesCS4A01G042700 chr6A 93.464 153 6 4 2324 2474 1672291 1672141 1.190000e-54 224.0
33 TraesCS4A01G042700 chr6A 92.903 155 9 2 2321 2474 494463095 494463248 1.190000e-54 224.0
34 TraesCS4A01G042700 chr6A 92.903 155 8 2 2321 2473 45782681 45782834 4.290000e-54 222.0
35 TraesCS4A01G042700 chr6A 86.628 172 20 3 2733 2904 383973706 383973874 1.560000e-43 187.0
36 TraesCS4A01G042700 chr5D 90.058 171 10 5 2324 2493 396818842 396818678 7.170000e-52 215.0
37 TraesCS4A01G042700 chr2D 89.474 171 16 1 2324 2494 119287961 119287793 7.170000e-52 215.0
38 TraesCS4A01G042700 chr2D 90.090 111 10 1 2601 2711 84340534 84340643 3.430000e-30 143.0
39 TraesCS4A01G042700 chr2D 87.069 116 10 3 2922 3032 193132635 193132750 3.460000e-25 126.0
40 TraesCS4A01G042700 chr3D 89.017 173 8 6 2324 2495 582171327 582171489 1.550000e-48 204.0
41 TraesCS4A01G042700 chr3D 88.000 175 13 5 2323 2495 17671031 17671199 2.010000e-47 200.0
42 TraesCS4A01G042700 chr3A 90.826 109 8 2 2767 2875 545963297 545963191 9.540000e-31 145.0
43 TraesCS4A01G042700 chr2B 89.565 115 11 1 2598 2711 719608062 719608176 9.540000e-31 145.0
44 TraesCS4A01G042700 chr2B 90.654 107 10 0 2605 2711 736908212 736908318 3.430000e-30 143.0
45 TraesCS4A01G042700 chr2B 88.496 113 13 0 2601 2713 241537936 241537824 1.600000e-28 137.0
46 TraesCS4A01G042700 chr2B 88.496 113 13 0 2599 2711 548773761 548773649 1.600000e-28 137.0
47 TraesCS4A01G042700 chr2B 85.345 116 12 3 2922 3032 249269312 249269427 7.480000e-22 115.0
48 TraesCS4A01G042700 chr1B 89.381 113 12 0 2601 2713 202776867 202776755 3.430000e-30 143.0
49 TraesCS4A01G042700 chr3B 89.286 112 11 1 2600 2711 326864507 326864617 4.440000e-29 139.0
50 TraesCS4A01G042700 chr3B 82.500 80 9 4 2766 2844 372831483 372831408 7.640000e-07 65.8
51 TraesCS4A01G042700 chr1D 81.429 140 14 8 2909 3037 442715318 442715180 1.620000e-18 104.0
52 TraesCS4A01G042700 chr1D 91.489 47 4 0 2829 2875 92377767 92377721 7.640000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G042700 chr4A 35875625 35878924 3299 False 6095.000000 6095 100.000000 1 3300 1 chr4A.!!$F1 3299
1 TraesCS4A01G042700 chr4D 434317376 434320685 3309 False 1388.666667 3212 93.628667 1 3041 3 chr4D.!!$F1 3040
2 TraesCS4A01G042700 chr4B 533722100 533724583 2483 False 997.000000 1862 90.971333 1 2286 3 chr4B.!!$F3 2285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 728 0.110869 ACGGCTCCTACTAGCTAGGG 59.889 60.0 24.35 16.41 42.51 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2676 3149 0.031585 GTTCAAACCCCGGCTTTGAC 59.968 55.0 19.77 13.43 37.36 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.062294 CGACGGGTTGACGAAACAAAA 59.938 47.619 7.78 0.00 40.86 2.44
76 77 3.451894 CATGCGTTGGAAGGGGGC 61.452 66.667 0.00 0.00 0.00 5.80
108 109 3.639099 GACGGCATCCATGATCCAT 57.361 52.632 0.00 0.00 0.00 3.41
109 110 1.162698 GACGGCATCCATGATCCATG 58.837 55.000 0.00 0.00 41.10 3.66
328 343 4.111016 TCGTAGCCACACGAGCCG 62.111 66.667 2.03 0.00 45.45 5.52
487 503 0.318699 CCTTTCGCGGCGAGATATGA 60.319 55.000 25.02 6.64 37.14 2.15
491 507 1.418373 TCGCGGCGAGATATGATTTG 58.582 50.000 22.69 0.00 0.00 2.32
622 638 1.762222 CGTGGATCGGCATTTCGGTC 61.762 60.000 0.00 0.00 39.35 4.79
626 642 2.094126 GATCGGCATTTCGGTCTGCG 62.094 60.000 0.00 0.00 39.30 5.18
661 677 1.913419 GATTCCCAGGGGTGACAGTTA 59.087 52.381 5.33 0.00 36.47 2.24
688 704 1.059369 CGGAATCTTCTGTTGCGCG 59.941 57.895 0.00 0.00 33.88 6.86
710 728 0.110869 ACGGCTCCTACTAGCTAGGG 59.889 60.000 24.35 16.41 42.51 3.53
713 731 1.145325 GGCTCCTACTAGCTAGGGTGA 59.855 57.143 24.35 15.05 42.51 4.02
717 735 4.475345 CTCCTACTAGCTAGGGTGACAAT 58.525 47.826 24.35 3.70 42.51 2.71
739 1038 3.719268 TGGTGCACCATATCATATCCC 57.281 47.619 34.74 4.13 42.01 3.85
805 1126 1.132453 GAGAAATTAAGTGGCGTGGGC 59.868 52.381 0.00 0.00 38.90 5.36
806 1127 0.179174 GAAATTAAGTGGCGTGGGCG 60.179 55.000 0.00 0.00 41.24 6.13
909 1230 2.401766 CCCTGACGCCATCTGTTGC 61.402 63.158 0.00 0.00 0.00 4.17
952 1273 0.829990 CCTCTGCTTCTTCCTCCTCC 59.170 60.000 0.00 0.00 0.00 4.30
992 1313 2.903350 GTGGCCGAACACCCGTTT 60.903 61.111 0.00 0.00 34.75 3.60
1012 1333 1.294659 CTTCTTCAGCTCCGCCACAC 61.295 60.000 0.00 0.00 0.00 3.82
1015 1336 3.240134 TTCAGCTCCGCCACACCTC 62.240 63.158 0.00 0.00 0.00 3.85
1016 1337 4.767255 CAGCTCCGCCACACCTCC 62.767 72.222 0.00 0.00 0.00 4.30
1025 1346 3.066190 CACACCTCCGGTCGCCTA 61.066 66.667 0.00 0.00 31.02 3.93
1058 1379 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1059 1380 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1060 1381 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1061 1382 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1062 1383 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1074 1395 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1076 1397 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
1102 1423 1.373497 CGCAGCACCGTCTCTCTTT 60.373 57.895 0.00 0.00 0.00 2.52
1103 1424 1.347817 CGCAGCACCGTCTCTCTTTC 61.348 60.000 0.00 0.00 0.00 2.62
1201 1522 0.038159 CCGATCCATCTACCGCTTCC 60.038 60.000 0.00 0.00 0.00 3.46
1362 1683 0.179078 TCTACTCCGAGCTCGTCCTC 60.179 60.000 32.41 0.00 37.74 3.71
1372 1693 4.710167 TCGTCCTCTCGCACCCGA 62.710 66.667 0.00 0.00 42.01 5.14
2094 2415 4.026640 TGAAGTTCGTGTTACGTGTTTAGC 60.027 41.667 0.00 0.00 43.14 3.09
2125 2446 7.147846 GCAAGAGATTTTCCCTCCAAATGATAA 60.148 37.037 0.00 0.00 0.00 1.75
2126 2447 8.921205 CAAGAGATTTTCCCTCCAAATGATAAT 58.079 33.333 0.00 0.00 0.00 1.28
2127 2448 8.474710 AGAGATTTTCCCTCCAAATGATAATG 57.525 34.615 0.00 0.00 0.00 1.90
2128 2449 7.508296 AGAGATTTTCCCTCCAAATGATAATGG 59.492 37.037 0.00 0.00 38.09 3.16
2129 2450 7.364627 AGATTTTCCCTCCAAATGATAATGGA 58.635 34.615 0.69 0.69 43.32 3.41
2130 2451 8.014859 AGATTTTCCCTCCAAATGATAATGGAT 58.985 33.333 0.96 0.00 44.41 3.41
2131 2452 7.601705 TTTTCCCTCCAAATGATAATGGATC 57.398 36.000 0.96 0.00 44.41 3.36
2132 2453 6.535161 TTCCCTCCAAATGATAATGGATCT 57.465 37.500 0.96 0.00 44.41 2.75
2133 2454 5.884322 TCCCTCCAAATGATAATGGATCTG 58.116 41.667 0.96 0.00 44.41 2.90
2134 2455 5.373555 TCCCTCCAAATGATAATGGATCTGT 59.626 40.000 0.96 0.00 44.41 3.41
2135 2456 5.475909 CCCTCCAAATGATAATGGATCTGTG 59.524 44.000 0.96 0.00 44.41 3.66
2136 2457 5.475909 CCTCCAAATGATAATGGATCTGTGG 59.524 44.000 0.96 0.00 44.41 4.17
2137 2458 6.264771 TCCAAATGATAATGGATCTGTGGA 57.735 37.500 0.00 0.00 40.74 4.02
2138 2459 6.301486 TCCAAATGATAATGGATCTGTGGAG 58.699 40.000 0.00 0.00 40.74 3.86
2139 2460 6.066690 CCAAATGATAATGGATCTGTGGAGT 58.933 40.000 0.00 0.00 39.12 3.85
2140 2461 7.072328 TCCAAATGATAATGGATCTGTGGAGTA 59.928 37.037 0.00 0.00 40.74 2.59
2141 2462 7.173907 CCAAATGATAATGGATCTGTGGAGTAC 59.826 40.741 0.00 0.00 39.12 2.73
2142 2463 7.623999 AATGATAATGGATCTGTGGAGTACT 57.376 36.000 0.00 0.00 35.37 2.73
2169 2490 1.140052 CTGTGGGTGGTTGACTACACA 59.860 52.381 0.00 0.00 38.46 3.72
2292 2614 4.624024 GCCTCGTTGCAAATATATAGCGTA 59.376 41.667 0.00 0.00 0.00 4.42
2309 2631 7.706281 ATAGCGTAGTCTCATTTTTCTGATG 57.294 36.000 0.00 0.00 0.00 3.07
2314 2636 5.695851 AGTCTCATTTTTCTGATGCGTTT 57.304 34.783 0.00 0.00 0.00 3.60
2315 2637 6.801539 AGTCTCATTTTTCTGATGCGTTTA 57.198 33.333 0.00 0.00 0.00 2.01
2316 2638 6.603095 AGTCTCATTTTTCTGATGCGTTTAC 58.397 36.000 0.00 0.00 0.00 2.01
2317 2639 5.795441 GTCTCATTTTTCTGATGCGTTTACC 59.205 40.000 0.00 0.00 0.00 2.85
2318 2640 5.705441 TCTCATTTTTCTGATGCGTTTACCT 59.295 36.000 0.00 0.00 0.00 3.08
2319 2641 5.938322 TCATTTTTCTGATGCGTTTACCTC 58.062 37.500 0.00 0.00 0.00 3.85
2320 2642 5.471797 TCATTTTTCTGATGCGTTTACCTCA 59.528 36.000 0.00 0.00 0.00 3.86
2321 2643 5.957842 TTTTTCTGATGCGTTTACCTCAT 57.042 34.783 0.00 0.00 0.00 2.90
2322 2644 5.957842 TTTTCTGATGCGTTTACCTCATT 57.042 34.783 0.00 0.00 0.00 2.57
2323 2645 5.545658 TTTCTGATGCGTTTACCTCATTC 57.454 39.130 0.00 0.00 0.00 2.67
2324 2646 4.200838 TCTGATGCGTTTACCTCATTCA 57.799 40.909 0.00 0.00 0.00 2.57
2325 2647 4.183865 TCTGATGCGTTTACCTCATTCAG 58.816 43.478 0.00 0.00 0.00 3.02
2326 2648 3.935203 CTGATGCGTTTACCTCATTCAGT 59.065 43.478 0.00 0.00 0.00 3.41
2327 2649 4.323417 TGATGCGTTTACCTCATTCAGTT 58.677 39.130 0.00 0.00 0.00 3.16
2328 2650 4.759693 TGATGCGTTTACCTCATTCAGTTT 59.240 37.500 0.00 0.00 0.00 2.66
2329 2651 4.481930 TGCGTTTACCTCATTCAGTTTG 57.518 40.909 0.00 0.00 0.00 2.93
2330 2652 3.880490 TGCGTTTACCTCATTCAGTTTGT 59.120 39.130 0.00 0.00 0.00 2.83
2331 2653 4.024387 TGCGTTTACCTCATTCAGTTTGTC 60.024 41.667 0.00 0.00 0.00 3.18
2332 2654 4.213482 GCGTTTACCTCATTCAGTTTGTCT 59.787 41.667 0.00 0.00 0.00 3.41
2333 2655 5.407387 GCGTTTACCTCATTCAGTTTGTCTA 59.593 40.000 0.00 0.00 0.00 2.59
2334 2656 6.073440 GCGTTTACCTCATTCAGTTTGTCTAA 60.073 38.462 0.00 0.00 0.00 2.10
2335 2657 7.360946 GCGTTTACCTCATTCAGTTTGTCTAAT 60.361 37.037 0.00 0.00 0.00 1.73
2336 2658 8.504005 CGTTTACCTCATTCAGTTTGTCTAATT 58.496 33.333 0.00 0.00 0.00 1.40
2337 2659 9.827411 GTTTACCTCATTCAGTTTGTCTAATTC 57.173 33.333 0.00 0.00 0.00 2.17
2338 2660 9.567776 TTTACCTCATTCAGTTTGTCTAATTCA 57.432 29.630 0.00 0.00 0.00 2.57
2339 2661 9.739276 TTACCTCATTCAGTTTGTCTAATTCAT 57.261 29.630 0.00 0.00 0.00 2.57
2341 2663 9.911788 ACCTCATTCAGTTTGTCTAATTCATAT 57.088 29.630 0.00 0.00 0.00 1.78
2376 2698 8.561738 TTTTAAGGATGTCACATCTAAACTCC 57.438 34.615 17.46 0.18 0.00 3.85
2377 2699 4.762289 AGGATGTCACATCTAAACTCCC 57.238 45.455 17.46 0.00 0.00 4.30
2378 2700 4.104086 AGGATGTCACATCTAAACTCCCA 58.896 43.478 17.46 0.00 0.00 4.37
2379 2701 4.080863 AGGATGTCACATCTAAACTCCCAC 60.081 45.833 17.46 0.00 0.00 4.61
2380 2702 4.323485 GGATGTCACATCTAAACTCCCACA 60.323 45.833 17.46 0.00 0.00 4.17
2381 2703 4.698201 TGTCACATCTAAACTCCCACAA 57.302 40.909 0.00 0.00 0.00 3.33
2382 2704 4.641396 TGTCACATCTAAACTCCCACAAG 58.359 43.478 0.00 0.00 0.00 3.16
2383 2705 4.102524 TGTCACATCTAAACTCCCACAAGT 59.897 41.667 0.00 0.00 0.00 3.16
2384 2706 5.305902 TGTCACATCTAAACTCCCACAAGTA 59.694 40.000 0.00 0.00 0.00 2.24
2385 2707 6.013725 TGTCACATCTAAACTCCCACAAGTAT 60.014 38.462 0.00 0.00 0.00 2.12
2386 2708 7.179516 TGTCACATCTAAACTCCCACAAGTATA 59.820 37.037 0.00 0.00 0.00 1.47
2387 2709 8.204836 GTCACATCTAAACTCCCACAAGTATAT 58.795 37.037 0.00 0.00 0.00 0.86
2388 2710 9.429109 TCACATCTAAACTCCCACAAGTATATA 57.571 33.333 0.00 0.00 0.00 0.86
2398 2720 9.998106 ACTCCCACAAGTATATAATGTATCAAC 57.002 33.333 2.94 0.00 0.00 3.18
2399 2721 9.996554 CTCCCACAAGTATATAATGTATCAACA 57.003 33.333 2.94 0.00 40.69 3.33
2448 2770 7.639113 AAAAATAGACCACAAACAGAGTGAA 57.361 32.000 0.00 0.00 39.30 3.18
2449 2771 7.639113 AAAATAGACCACAAACAGAGTGAAA 57.361 32.000 0.00 0.00 39.30 2.69
2450 2772 7.639113 AAATAGACCACAAACAGAGTGAAAA 57.361 32.000 0.00 0.00 39.30 2.29
2451 2773 7.823745 AATAGACCACAAACAGAGTGAAAAT 57.176 32.000 0.00 0.00 39.30 1.82
2452 2774 5.757850 AGACCACAAACAGAGTGAAAATC 57.242 39.130 0.00 0.00 39.30 2.17
2453 2775 5.192927 AGACCACAAACAGAGTGAAAATCA 58.807 37.500 0.00 0.00 39.30 2.57
2454 2776 5.297776 AGACCACAAACAGAGTGAAAATCAG 59.702 40.000 0.00 0.00 39.30 2.90
2455 2777 4.202050 ACCACAAACAGAGTGAAAATCAGC 60.202 41.667 0.00 0.00 39.30 4.26
2456 2778 4.037208 CCACAAACAGAGTGAAAATCAGCT 59.963 41.667 0.00 0.00 39.30 4.24
2457 2779 5.450965 CCACAAACAGAGTGAAAATCAGCTT 60.451 40.000 0.00 0.00 39.30 3.74
2458 2780 6.238731 CCACAAACAGAGTGAAAATCAGCTTA 60.239 38.462 0.00 0.00 39.30 3.09
2459 2781 6.854892 CACAAACAGAGTGAAAATCAGCTTAG 59.145 38.462 0.00 0.00 39.30 2.18
2460 2782 6.767902 ACAAACAGAGTGAAAATCAGCTTAGA 59.232 34.615 0.00 0.00 30.01 2.10
2461 2783 7.446625 ACAAACAGAGTGAAAATCAGCTTAGAT 59.553 33.333 0.00 0.00 30.01 1.98
2462 2784 6.981762 ACAGAGTGAAAATCAGCTTAGATG 57.018 37.500 0.00 0.00 30.01 2.90
2463 2785 6.471146 ACAGAGTGAAAATCAGCTTAGATGT 58.529 36.000 0.00 0.00 30.01 3.06
2464 2786 6.939163 ACAGAGTGAAAATCAGCTTAGATGTT 59.061 34.615 0.00 0.00 30.01 2.71
2465 2787 8.097038 ACAGAGTGAAAATCAGCTTAGATGTTA 58.903 33.333 0.00 0.00 30.01 2.41
2466 2788 8.386606 CAGAGTGAAAATCAGCTTAGATGTTAC 58.613 37.037 0.00 0.00 30.01 2.50
2467 2789 8.097038 AGAGTGAAAATCAGCTTAGATGTTACA 58.903 33.333 0.00 0.00 30.01 2.41
2468 2790 8.798859 AGTGAAAATCAGCTTAGATGTTACAT 57.201 30.769 0.00 0.00 0.00 2.29
2469 2791 9.890629 AGTGAAAATCAGCTTAGATGTTACATA 57.109 29.630 0.00 0.00 0.00 2.29
2478 2800 9.973450 CAGCTTAGATGTTACATAACTAGATGT 57.027 33.333 0.00 0.00 42.68 3.06
2479 2801 9.973450 AGCTTAGATGTTACATAACTAGATGTG 57.027 33.333 0.00 1.65 40.31 3.21
2480 2802 9.751542 GCTTAGATGTTACATAACTAGATGTGT 57.248 33.333 7.52 7.52 40.31 3.72
2483 2805 8.540507 AGATGTTACATAACTAGATGTGTCCT 57.459 34.615 5.66 0.00 40.31 3.85
2484 2806 9.642343 AGATGTTACATAACTAGATGTGTCCTA 57.358 33.333 5.66 0.00 40.31 2.94
2485 2807 9.900710 GATGTTACATAACTAGATGTGTCCTAG 57.099 37.037 5.66 0.00 40.31 3.02
2486 2808 9.642343 ATGTTACATAACTAGATGTGTCCTAGA 57.358 33.333 5.66 0.00 40.31 2.43
2487 2809 8.900781 TGTTACATAACTAGATGTGTCCTAGAC 58.099 37.037 5.66 1.17 40.31 2.59
2488 2810 8.900781 GTTACATAACTAGATGTGTCCTAGACA 58.099 37.037 5.66 0.00 40.31 3.41
2489 2811 7.575414 ACATAACTAGATGTGTCCTAGACAG 57.425 40.000 0.00 0.00 43.57 3.51
2490 2812 7.347252 ACATAACTAGATGTGTCCTAGACAGA 58.653 38.462 0.00 0.00 43.57 3.41
2491 2813 7.283580 ACATAACTAGATGTGTCCTAGACAGAC 59.716 40.741 0.00 0.00 43.57 3.51
2492 2814 4.528920 ACTAGATGTGTCCTAGACAGACC 58.471 47.826 0.00 0.00 43.57 3.85
2493 2815 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
2494 2816 2.313342 AGATGTGTCCTAGACAGACCCT 59.687 50.000 0.00 0.00 43.57 4.34
2495 2817 2.217510 TGTGTCCTAGACAGACCCTC 57.782 55.000 0.00 0.00 43.57 4.30
2511 2833 7.588169 ACAGACCCTCTACTTCATTCTACTAT 58.412 38.462 0.00 0.00 0.00 2.12
2513 2835 7.007723 AGACCCTCTACTTCATTCTACTATGG 58.992 42.308 0.00 0.00 0.00 2.74
2530 2852 8.636213 TCTACTATGGTTTTCTTCCTATTACCG 58.364 37.037 0.00 0.00 0.00 4.02
2531 2853 6.589135 ACTATGGTTTTCTTCCTATTACCGG 58.411 40.000 0.00 0.00 0.00 5.28
2542 2864 3.911260 TCCTATTACCGGATAATTGCCCA 59.089 43.478 9.46 0.00 35.08 5.36
2621 3094 6.609616 ACTTTTAGAAAAATGAGACCAACCCA 59.390 34.615 0.00 0.00 0.00 4.51
2622 3095 7.125053 ACTTTTAGAAAAATGAGACCAACCCAA 59.875 33.333 0.00 0.00 0.00 4.12
2624 3097 3.897505 AGAAAAATGAGACCAACCCAAGG 59.102 43.478 0.00 0.00 0.00 3.61
2625 3098 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
2628 3101 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
2629 3102 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
2630 3103 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
2671 3144 4.456806 AAAAACTCCGCGAGCACT 57.543 50.000 8.23 0.00 32.04 4.40
2672 3145 1.941812 AAAAACTCCGCGAGCACTG 59.058 52.632 8.23 0.00 32.04 3.66
2681 3154 3.701530 CGAGCACTGCGCGTCAAA 61.702 61.111 17.86 0.00 45.80 2.69
2682 3155 3.620187 CGAGCACTGCGCGTCAAAG 62.620 63.158 17.86 3.20 45.80 2.77
2685 3158 4.724697 CACTGCGCGTCAAAGCCG 62.725 66.667 8.43 0.00 0.00 5.52
2697 3170 2.728397 AAAGCCGGGGTTTGAACTC 58.272 52.632 22.41 0.00 31.83 3.01
2698 3171 0.826256 AAAGCCGGGGTTTGAACTCC 60.826 55.000 22.41 2.56 46.44 3.85
2702 3175 4.074647 GGGGTTTGAACTCCGGTG 57.925 61.111 0.00 0.00 40.30 4.94
2703 3176 1.602605 GGGGTTTGAACTCCGGTGG 60.603 63.158 8.63 2.00 40.30 4.61
2705 3178 2.265904 GGTTTGAACTCCGGTGGGC 61.266 63.158 8.63 0.00 0.00 5.36
2706 3179 1.228154 GTTTGAACTCCGGTGGGCT 60.228 57.895 8.63 0.00 0.00 5.19
2707 3180 1.228124 TTTGAACTCCGGTGGGCTG 60.228 57.895 8.63 0.00 0.00 4.85
2708 3181 2.690653 TTTGAACTCCGGTGGGCTGG 62.691 60.000 8.63 0.00 42.59 4.85
2743 3539 2.440253 CCCCGTCTTCCCCATAATTACA 59.560 50.000 0.00 0.00 0.00 2.41
2942 3738 2.426023 GTCCTTGTGCCCTCGTGT 59.574 61.111 0.00 0.00 0.00 4.49
2971 3767 2.164332 TAGGGTTCCCTGCCTCTCGT 62.164 60.000 19.58 0.00 37.64 4.18
3014 3810 2.034066 CTTGGACCATGGTGGCGT 59.966 61.111 25.52 0.00 42.67 5.68
3021 3817 3.055719 CATGGTGGCGTGGTGGAC 61.056 66.667 0.00 0.00 0.00 4.02
3045 3841 2.504519 CCTTACCGGTAGGGCTGC 59.495 66.667 27.88 0.00 43.47 5.25
3046 3842 2.363975 CCTTACCGGTAGGGCTGCA 61.364 63.158 27.88 4.77 43.47 4.41
3047 3843 1.600107 CTTACCGGTAGGGCTGCAA 59.400 57.895 15.73 0.00 43.47 4.08
3048 3844 0.035820 CTTACCGGTAGGGCTGCAAA 60.036 55.000 15.73 0.00 43.47 3.68
3049 3845 0.321830 TTACCGGTAGGGCTGCAAAC 60.322 55.000 15.20 0.00 43.47 2.93
3050 3846 2.510064 TACCGGTAGGGCTGCAAACG 62.510 60.000 11.16 0.28 43.47 3.60
3051 3847 2.047655 CGGTAGGGCTGCAAACGA 60.048 61.111 0.50 0.00 0.00 3.85
3052 3848 2.100631 CGGTAGGGCTGCAAACGAG 61.101 63.158 0.50 0.00 0.00 4.18
3053 3849 1.003718 GGTAGGGCTGCAAACGAGT 60.004 57.895 0.50 0.00 0.00 4.18
3054 3850 1.019805 GGTAGGGCTGCAAACGAGTC 61.020 60.000 0.50 0.00 0.00 3.36
3055 3851 1.080093 TAGGGCTGCAAACGAGTCG 60.080 57.895 11.85 11.85 0.00 4.18
3056 3852 1.529152 TAGGGCTGCAAACGAGTCGA 61.529 55.000 21.50 0.00 0.00 4.20
3057 3853 2.383527 GGGCTGCAAACGAGTCGAG 61.384 63.158 21.50 6.68 0.00 4.04
3058 3854 1.664965 GGCTGCAAACGAGTCGAGT 60.665 57.895 21.50 3.32 0.00 4.18
3059 3855 1.222115 GGCTGCAAACGAGTCGAGTT 61.222 55.000 21.50 9.93 0.00 3.01
3060 3856 0.161870 GCTGCAAACGAGTCGAGTTC 59.838 55.000 21.50 6.13 0.00 3.01
3061 3857 0.431233 CTGCAAACGAGTCGAGTTCG 59.569 55.000 21.50 15.45 43.38 3.95
3070 3866 2.257371 TCGAGTTCGAGCGGGTTG 59.743 61.111 0.00 0.00 44.22 3.77
3071 3867 2.809601 CGAGTTCGAGCGGGTTGG 60.810 66.667 0.00 0.00 43.02 3.77
3072 3868 2.342648 GAGTTCGAGCGGGTTGGT 59.657 61.111 0.00 0.00 0.00 3.67
3073 3869 1.737008 GAGTTCGAGCGGGTTGGTC 60.737 63.158 0.00 0.00 41.76 4.02
3074 3870 2.156051 GAGTTCGAGCGGGTTGGTCT 62.156 60.000 0.00 0.00 43.02 3.85
3075 3871 0.896940 AGTTCGAGCGGGTTGGTCTA 60.897 55.000 0.00 0.00 43.02 2.59
3076 3872 0.458025 GTTCGAGCGGGTTGGTCTAG 60.458 60.000 0.00 0.00 43.02 2.43
3077 3873 1.601419 TTCGAGCGGGTTGGTCTAGG 61.601 60.000 0.00 0.00 43.02 3.02
3078 3874 2.187163 GAGCGGGTTGGTCTAGGC 59.813 66.667 0.00 0.00 41.93 3.93
3079 3875 2.284699 AGCGGGTTGGTCTAGGCT 60.285 61.111 0.00 0.00 0.00 4.58
3080 3876 2.187163 GCGGGTTGGTCTAGGCTC 59.813 66.667 0.00 0.00 0.00 4.70
3081 3877 2.656069 GCGGGTTGGTCTAGGCTCA 61.656 63.158 0.00 0.00 0.00 4.26
3082 3878 1.517832 CGGGTTGGTCTAGGCTCAG 59.482 63.158 0.00 0.00 0.00 3.35
3083 3879 1.222113 GGGTTGGTCTAGGCTCAGC 59.778 63.158 0.00 0.00 0.00 4.26
3084 3880 1.268283 GGGTTGGTCTAGGCTCAGCT 61.268 60.000 0.00 0.00 0.00 4.24
3085 3881 0.176910 GGTTGGTCTAGGCTCAGCTC 59.823 60.000 0.00 0.00 0.00 4.09
3086 3882 0.898320 GTTGGTCTAGGCTCAGCTCA 59.102 55.000 0.00 0.00 0.00 4.26
3087 3883 1.276421 GTTGGTCTAGGCTCAGCTCAA 59.724 52.381 0.00 0.00 0.00 3.02
3088 3884 0.898320 TGGTCTAGGCTCAGCTCAAC 59.102 55.000 0.00 0.00 0.00 3.18
3089 3885 1.190643 GGTCTAGGCTCAGCTCAACT 58.809 55.000 0.00 0.00 0.00 3.16
3090 3886 1.136110 GGTCTAGGCTCAGCTCAACTC 59.864 57.143 0.00 0.00 0.00 3.01
3091 3887 1.098869 TCTAGGCTCAGCTCAACTCG 58.901 55.000 0.00 0.00 0.00 4.18
3092 3888 0.814457 CTAGGCTCAGCTCAACTCGT 59.186 55.000 0.00 0.00 0.00 4.18
3093 3889 2.017782 CTAGGCTCAGCTCAACTCGTA 58.982 52.381 0.00 0.00 0.00 3.43
3094 3890 0.528470 AGGCTCAGCTCAACTCGTAC 59.472 55.000 0.00 0.00 0.00 3.67
3095 3891 0.528470 GGCTCAGCTCAACTCGTACT 59.472 55.000 0.00 0.00 0.00 2.73
3096 3892 1.743958 GGCTCAGCTCAACTCGTACTA 59.256 52.381 0.00 0.00 0.00 1.82
3097 3893 2.163815 GGCTCAGCTCAACTCGTACTAA 59.836 50.000 0.00 0.00 0.00 2.24
3098 3894 3.367087 GGCTCAGCTCAACTCGTACTAAA 60.367 47.826 0.00 0.00 0.00 1.85
3099 3895 4.235360 GCTCAGCTCAACTCGTACTAAAA 58.765 43.478 0.00 0.00 0.00 1.52
3100 3896 4.865365 GCTCAGCTCAACTCGTACTAAAAT 59.135 41.667 0.00 0.00 0.00 1.82
3101 3897 5.348997 GCTCAGCTCAACTCGTACTAAAATT 59.651 40.000 0.00 0.00 0.00 1.82
3102 3898 6.454450 GCTCAGCTCAACTCGTACTAAAATTC 60.454 42.308 0.00 0.00 0.00 2.17
3103 3899 5.571741 TCAGCTCAACTCGTACTAAAATTCG 59.428 40.000 0.00 0.00 0.00 3.34
3104 3900 5.571741 CAGCTCAACTCGTACTAAAATTCGA 59.428 40.000 0.00 0.00 0.00 3.71
3110 3906 4.812293 CTCGTACTAAAATTCGAGCAAGC 58.188 43.478 0.00 0.00 41.98 4.01
3111 3907 4.491676 TCGTACTAAAATTCGAGCAAGCT 58.508 39.130 0.00 0.00 0.00 3.74
3112 3908 4.561606 TCGTACTAAAATTCGAGCAAGCTC 59.438 41.667 11.94 11.94 39.55 4.09
3113 3909 4.326278 CGTACTAAAATTCGAGCAAGCTCA 59.674 41.667 20.75 3.84 42.86 4.26
3114 3910 5.163992 CGTACTAAAATTCGAGCAAGCTCAA 60.164 40.000 20.75 14.03 42.86 3.02
3115 3911 5.689383 ACTAAAATTCGAGCAAGCTCAAA 57.311 34.783 20.75 10.27 42.86 2.69
3116 3912 6.072112 ACTAAAATTCGAGCAAGCTCAAAA 57.928 33.333 20.75 14.30 42.86 2.44
3117 3913 6.681777 ACTAAAATTCGAGCAAGCTCAAAAT 58.318 32.000 20.75 15.71 42.86 1.82
3118 3914 5.834239 AAAATTCGAGCAAGCTCAAAATG 57.166 34.783 20.75 5.37 42.86 2.32
3119 3915 4.510038 AATTCGAGCAAGCTCAAAATGT 57.490 36.364 20.75 8.58 42.86 2.71
3120 3916 2.975410 TCGAGCAAGCTCAAAATGTG 57.025 45.000 20.75 4.04 42.86 3.21
3121 3917 1.069022 TCGAGCAAGCTCAAAATGTGC 60.069 47.619 20.75 0.00 42.86 4.57
3122 3918 1.334054 GAGCAAGCTCAAAATGTGCG 58.666 50.000 16.69 0.00 41.31 5.34
3123 3919 0.953727 AGCAAGCTCAAAATGTGCGA 59.046 45.000 0.00 0.00 41.31 5.10
3124 3920 1.337703 AGCAAGCTCAAAATGTGCGAA 59.662 42.857 0.00 0.00 41.31 4.70
3125 3921 1.717645 GCAAGCTCAAAATGTGCGAAG 59.282 47.619 0.00 0.00 41.31 3.79
3143 3939 4.182132 CTCAAGGTCGAGCTGCAG 57.818 61.111 19.39 10.11 0.00 4.41
3144 3940 1.588597 CTCAAGGTCGAGCTGCAGA 59.411 57.895 20.43 15.02 0.00 4.26
3145 3941 0.037882 CTCAAGGTCGAGCTGCAGAA 60.038 55.000 20.43 1.43 0.00 3.02
3146 3942 0.392706 TCAAGGTCGAGCTGCAGAAA 59.607 50.000 20.43 0.00 0.00 2.52
3147 3943 0.795085 CAAGGTCGAGCTGCAGAAAG 59.205 55.000 20.43 7.18 0.00 2.62
3148 3944 0.394565 AAGGTCGAGCTGCAGAAAGT 59.605 50.000 20.43 0.00 0.00 2.66
3149 3945 0.320247 AGGTCGAGCTGCAGAAAGTG 60.320 55.000 20.43 1.45 0.00 3.16
3150 3946 1.294659 GGTCGAGCTGCAGAAAGTGG 61.295 60.000 20.43 0.00 0.00 4.00
3151 3947 1.669115 TCGAGCTGCAGAAAGTGGC 60.669 57.895 20.43 0.00 0.00 5.01
3152 3948 1.670406 CGAGCTGCAGAAAGTGGCT 60.670 57.895 20.43 5.87 35.86 4.75
3153 3949 1.633852 CGAGCTGCAGAAAGTGGCTC 61.634 60.000 20.43 14.69 43.86 4.70
3154 3950 0.604780 GAGCTGCAGAAAGTGGCTCA 60.605 55.000 20.43 0.00 45.79 4.26
3155 3951 0.037877 AGCTGCAGAAAGTGGCTCAT 59.962 50.000 20.43 0.00 0.00 2.90
3156 3952 0.170561 GCTGCAGAAAGTGGCTCATG 59.829 55.000 20.43 0.00 0.00 3.07
3157 3953 0.170561 CTGCAGAAAGTGGCTCATGC 59.829 55.000 8.42 0.00 38.76 4.06
3158 3954 0.251033 TGCAGAAAGTGGCTCATGCT 60.251 50.000 0.00 0.00 39.59 3.79
3159 3955 0.450983 GCAGAAAGTGGCTCATGCTC 59.549 55.000 0.00 0.00 39.59 4.26
3160 3956 1.817357 CAGAAAGTGGCTCATGCTCA 58.183 50.000 0.00 0.00 39.59 4.26
3161 3957 2.156917 CAGAAAGTGGCTCATGCTCAA 58.843 47.619 0.00 0.00 39.59 3.02
3162 3958 2.095364 CAGAAAGTGGCTCATGCTCAAC 60.095 50.000 0.00 0.00 39.59 3.18
3163 3959 2.157738 GAAAGTGGCTCATGCTCAACT 58.842 47.619 0.00 0.00 39.59 3.16
3164 3960 2.283145 AAGTGGCTCATGCTCAACTT 57.717 45.000 2.19 2.19 39.59 2.66
3165 3961 1.531423 AGTGGCTCATGCTCAACTTG 58.469 50.000 0.00 0.00 39.59 3.16
3166 3962 1.202855 AGTGGCTCATGCTCAACTTGT 60.203 47.619 0.00 0.00 39.59 3.16
3167 3963 2.038952 AGTGGCTCATGCTCAACTTGTA 59.961 45.455 0.00 0.00 39.59 2.41
3168 3964 2.813754 GTGGCTCATGCTCAACTTGTAA 59.186 45.455 0.00 0.00 39.59 2.41
3169 3965 2.813754 TGGCTCATGCTCAACTTGTAAC 59.186 45.455 0.00 0.00 39.59 2.50
3170 3966 2.159653 GGCTCATGCTCAACTTGTAACG 60.160 50.000 0.00 0.00 39.59 3.18
3171 3967 2.736721 GCTCATGCTCAACTTGTAACGA 59.263 45.455 0.00 0.00 36.03 3.85
3172 3968 3.372206 GCTCATGCTCAACTTGTAACGAT 59.628 43.478 0.00 0.00 36.03 3.73
3173 3969 4.493220 GCTCATGCTCAACTTGTAACGATC 60.493 45.833 0.00 0.00 36.03 3.69
3174 3970 4.820897 TCATGCTCAACTTGTAACGATCT 58.179 39.130 0.00 0.00 0.00 2.75
3175 3971 4.864806 TCATGCTCAACTTGTAACGATCTC 59.135 41.667 0.00 0.00 0.00 2.75
3176 3972 3.242518 TGCTCAACTTGTAACGATCTCG 58.757 45.455 0.00 0.00 46.33 4.04
3177 3973 3.057806 TGCTCAACTTGTAACGATCTCGA 60.058 43.478 6.60 0.00 43.02 4.04
3178 3974 3.544285 GCTCAACTTGTAACGATCTCGAG 59.456 47.826 5.93 5.93 43.02 4.04
3179 3975 3.499048 TCAACTTGTAACGATCTCGAGC 58.501 45.455 7.81 0.00 43.02 5.03
3180 3976 3.190744 TCAACTTGTAACGATCTCGAGCT 59.809 43.478 7.81 0.00 43.02 4.09
3181 3977 4.393990 TCAACTTGTAACGATCTCGAGCTA 59.606 41.667 7.81 0.00 43.02 3.32
3182 3978 4.539509 ACTTGTAACGATCTCGAGCTAG 57.460 45.455 7.81 0.35 43.02 3.42
3183 3979 3.940221 ACTTGTAACGATCTCGAGCTAGT 59.060 43.478 7.81 1.12 43.02 2.57
3184 3980 4.395542 ACTTGTAACGATCTCGAGCTAGTT 59.604 41.667 16.94 16.94 43.02 2.24
3185 3981 4.959596 TGTAACGATCTCGAGCTAGTTT 57.040 40.909 17.76 5.89 43.02 2.66
3186 3982 4.906423 TGTAACGATCTCGAGCTAGTTTC 58.094 43.478 17.76 13.84 43.02 2.78
3187 3983 2.741122 ACGATCTCGAGCTAGTTTCG 57.259 50.000 7.81 11.03 43.02 3.46
3188 3984 2.277969 ACGATCTCGAGCTAGTTTCGA 58.722 47.619 7.81 16.82 44.05 3.71
3201 3997 6.683090 GCTAGTTTCGAGCTACATAAGATG 57.317 41.667 0.00 0.00 36.96 2.90
3202 3998 6.439599 GCTAGTTTCGAGCTACATAAGATGA 58.560 40.000 0.00 0.00 36.96 2.92
3203 3999 7.087639 GCTAGTTTCGAGCTACATAAGATGAT 58.912 38.462 0.00 0.00 36.96 2.45
3204 4000 7.596995 GCTAGTTTCGAGCTACATAAGATGATT 59.403 37.037 0.00 0.00 36.96 2.57
3205 4001 9.469807 CTAGTTTCGAGCTACATAAGATGATTT 57.530 33.333 0.00 0.00 0.00 2.17
3206 4002 8.723942 AGTTTCGAGCTACATAAGATGATTTT 57.276 30.769 0.00 0.00 0.00 1.82
3207 4003 9.167311 AGTTTCGAGCTACATAAGATGATTTTT 57.833 29.630 0.00 0.00 0.00 1.94
3244 4040 6.805713 TGGCAAATTTTAAAGCTAGATAGGC 58.194 36.000 0.00 0.00 0.00 3.93
3245 4041 6.183360 TGGCAAATTTTAAAGCTAGATAGGCC 60.183 38.462 0.00 0.00 34.88 5.19
3246 4042 6.183360 GGCAAATTTTAAAGCTAGATAGGCCA 60.183 38.462 5.01 0.00 34.47 5.36
3247 4043 6.697455 GCAAATTTTAAAGCTAGATAGGCCAC 59.303 38.462 5.01 0.00 0.00 5.01
3248 4044 7.630513 GCAAATTTTAAAGCTAGATAGGCCACA 60.631 37.037 5.01 0.00 0.00 4.17
3249 4045 7.954666 AATTTTAAAGCTAGATAGGCCACAA 57.045 32.000 5.01 0.00 0.00 3.33
3250 4046 6.753107 TTTTAAAGCTAGATAGGCCACAAC 57.247 37.500 5.01 0.00 0.00 3.32
3251 4047 5.429681 TTAAAGCTAGATAGGCCACAACA 57.570 39.130 5.01 0.00 0.00 3.33
3252 4048 3.550437 AAGCTAGATAGGCCACAACAG 57.450 47.619 5.01 0.00 0.00 3.16
3253 4049 2.752030 AGCTAGATAGGCCACAACAGA 58.248 47.619 5.01 0.00 0.00 3.41
3254 4050 3.107601 AGCTAGATAGGCCACAACAGAA 58.892 45.455 5.01 0.00 0.00 3.02
3255 4051 3.118592 AGCTAGATAGGCCACAACAGAAC 60.119 47.826 5.01 0.00 0.00 3.01
3256 4052 3.369471 GCTAGATAGGCCACAACAGAACA 60.369 47.826 5.01 0.00 0.00 3.18
3257 4053 3.340814 AGATAGGCCACAACAGAACAG 57.659 47.619 5.01 0.00 0.00 3.16
3258 4054 2.906389 AGATAGGCCACAACAGAACAGA 59.094 45.455 5.01 0.00 0.00 3.41
3259 4055 3.327757 AGATAGGCCACAACAGAACAGAA 59.672 43.478 5.01 0.00 0.00 3.02
3260 4056 2.435372 AGGCCACAACAGAACAGAAA 57.565 45.000 5.01 0.00 0.00 2.52
3261 4057 2.733956 AGGCCACAACAGAACAGAAAA 58.266 42.857 5.01 0.00 0.00 2.29
3262 4058 3.096092 AGGCCACAACAGAACAGAAAAA 58.904 40.909 5.01 0.00 0.00 1.94
3263 4059 3.706086 AGGCCACAACAGAACAGAAAAAT 59.294 39.130 5.01 0.00 0.00 1.82
3264 4060 4.051237 GGCCACAACAGAACAGAAAAATC 58.949 43.478 0.00 0.00 0.00 2.17
3265 4061 4.441356 GGCCACAACAGAACAGAAAAATCA 60.441 41.667 0.00 0.00 0.00 2.57
3266 4062 4.504097 GCCACAACAGAACAGAAAAATCAC 59.496 41.667 0.00 0.00 0.00 3.06
3267 4063 5.679638 GCCACAACAGAACAGAAAAATCACT 60.680 40.000 0.00 0.00 0.00 3.41
3268 4064 6.459573 GCCACAACAGAACAGAAAAATCACTA 60.460 38.462 0.00 0.00 0.00 2.74
3269 4065 7.651808 CCACAACAGAACAGAAAAATCACTAT 58.348 34.615 0.00 0.00 0.00 2.12
3270 4066 8.783093 CCACAACAGAACAGAAAAATCACTATA 58.217 33.333 0.00 0.00 0.00 1.31
3296 4092 8.833231 AATTCGACTTATTCTTTCTCAAGTGA 57.167 30.769 0.00 0.00 31.57 3.41
3297 4093 8.833231 ATTCGACTTATTCTTTCTCAAGTGAA 57.167 30.769 0.00 0.00 31.57 3.18
3298 4094 7.875316 TCGACTTATTCTTTCTCAAGTGAAG 57.125 36.000 0.00 0.00 31.57 3.02
3299 4095 7.658261 TCGACTTATTCTTTCTCAAGTGAAGA 58.342 34.615 0.00 0.00 31.57 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.431856 GACACTTTTGTTTCGTCAACCC 58.568 45.455 0.00 0.00 35.47 4.11
30 31 0.171455 TTTGCCGCAAAAACGACACT 59.829 45.000 16.17 0.00 29.89 3.55
65 66 1.691219 CAAGCTAGCCCCCTTCCAA 59.309 57.895 12.13 0.00 0.00 3.53
66 67 2.983879 GCAAGCTAGCCCCCTTCCA 61.984 63.158 12.13 0.00 0.00 3.53
106 107 1.902918 CCACACCACACCACCCATG 60.903 63.158 0.00 0.00 0.00 3.66
107 108 2.520458 CCACACCACACCACCCAT 59.480 61.111 0.00 0.00 0.00 4.00
108 109 4.514585 GCCACACCACACCACCCA 62.515 66.667 0.00 0.00 0.00 4.51
110 111 4.868116 ACGCCACACCACACCACC 62.868 66.667 0.00 0.00 0.00 4.61
111 112 3.582120 CACGCCACACCACACCAC 61.582 66.667 0.00 0.00 0.00 4.16
112 113 4.866224 CCACGCCACACCACACCA 62.866 66.667 0.00 0.00 0.00 4.17
218 220 2.564947 TGGGAATGTATGTTTGTTGCCC 59.435 45.455 0.00 0.00 31.84 5.36
487 503 2.338257 CGTGCCGGCAAACCAAAT 59.662 55.556 34.66 0.00 34.57 2.32
513 529 1.595929 GTCCGCCGTTTTCACCAGA 60.596 57.895 0.00 0.00 0.00 3.86
661 677 2.028930 ACAGAAGATTCCGAGCGAAAGT 60.029 45.455 0.00 0.00 33.08 2.66
688 704 0.822532 TAGCTAGTAGGAGCCGTGGC 60.823 60.000 1.67 1.67 43.97 5.01
700 716 3.587506 ACCAAATTGTCACCCTAGCTAGT 59.412 43.478 19.31 0.00 0.00 2.57
739 1038 0.882042 GACCCGAGCATATGCCACAG 60.882 60.000 23.96 13.15 43.38 3.66
769 1068 1.134901 CTCGACCGACGTGGAGAAG 59.865 63.158 10.46 2.04 45.08 2.85
805 1126 0.461548 TGCCTCACTGCTTATCTCCG 59.538 55.000 0.00 0.00 0.00 4.63
806 1127 1.208052 TGTGCCTCACTGCTTATCTCC 59.792 52.381 0.00 0.00 35.11 3.71
891 1212 2.401766 GCAACAGATGGCGTCAGGG 61.402 63.158 9.78 0.58 0.00 4.45
909 1230 1.077858 GCAGGGAAGAAGGCAGGAG 60.078 63.158 0.00 0.00 0.00 3.69
1015 1336 2.754658 AGAGGTGTAGGCGACCGG 60.755 66.667 0.00 0.00 38.64 5.28
1016 1337 1.716826 GAGAGAGGTGTAGGCGACCG 61.717 65.000 0.00 0.00 38.64 4.79
1017 1338 0.394625 AGAGAGAGGTGTAGGCGACC 60.395 60.000 0.00 0.00 0.00 4.79
1018 1339 1.018910 GAGAGAGAGGTGTAGGCGAC 58.981 60.000 0.00 0.00 0.00 5.19
1019 1340 0.913205 AGAGAGAGAGGTGTAGGCGA 59.087 55.000 0.00 0.00 0.00 5.54
1020 1341 1.134220 AGAGAGAGAGAGGTGTAGGCG 60.134 57.143 0.00 0.00 0.00 5.52
1021 1342 2.172717 AGAGAGAGAGAGAGGTGTAGGC 59.827 54.545 0.00 0.00 0.00 3.93
1022 1343 3.711704 AGAGAGAGAGAGAGAGGTGTAGG 59.288 52.174 0.00 0.00 0.00 3.18
1025 1346 3.452627 GAGAGAGAGAGAGAGAGAGGTGT 59.547 52.174 0.00 0.00 0.00 4.16
1058 1379 2.435805 GCTGGAGAGAGAGAGAGAGAGA 59.564 54.545 0.00 0.00 0.00 3.10
1059 1380 2.804572 CGCTGGAGAGAGAGAGAGAGAG 60.805 59.091 0.00 0.00 0.00 3.20
1060 1381 1.138859 CGCTGGAGAGAGAGAGAGAGA 59.861 57.143 0.00 0.00 0.00 3.10
1061 1382 1.586422 CGCTGGAGAGAGAGAGAGAG 58.414 60.000 0.00 0.00 0.00 3.20
1062 1383 0.463654 GCGCTGGAGAGAGAGAGAGA 60.464 60.000 0.00 0.00 0.00 3.10
1088 1409 1.816224 AGAGAGAAAGAGAGACGGTGC 59.184 52.381 0.00 0.00 0.00 5.01
1093 1414 4.035675 GCTGCTAGAGAGAGAAAGAGAGAC 59.964 50.000 0.00 0.00 0.00 3.36
1094 1415 4.199310 GCTGCTAGAGAGAGAAAGAGAGA 58.801 47.826 0.00 0.00 0.00 3.10
1102 1423 1.450491 ACGCGCTGCTAGAGAGAGA 60.450 57.895 5.73 0.00 0.00 3.10
1103 1424 1.298264 CACGCGCTGCTAGAGAGAG 60.298 63.158 5.73 0.00 0.00 3.20
1134 1455 3.414700 CACTTGTCGACGCAGGCC 61.415 66.667 11.62 0.00 0.00 5.19
1278 1599 1.668101 CGTACAGCTCCTCCCAGACC 61.668 65.000 0.00 0.00 0.00 3.85
1407 1728 2.515523 CCCGGGATGCAGAGCTTG 60.516 66.667 18.48 0.00 0.00 4.01
1740 2061 2.278013 GTCTCGCCGATGACGACC 60.278 66.667 0.00 0.00 42.66 4.79
1904 2225 4.286320 CCCCGATCTTCGCTCCGG 62.286 72.222 0.00 0.00 38.82 5.14
1905 2226 4.951963 GCCCCGATCTTCGCTCCG 62.952 72.222 0.00 0.00 38.82 4.63
1941 2262 3.343421 GTTCCACACGCCACGTCC 61.343 66.667 0.00 0.00 38.32 4.79
2094 2415 1.815003 AGGGAAAATCTCTTGCTTGCG 59.185 47.619 0.00 0.00 0.00 4.85
2125 2446 3.987745 ACAGAGTACTCCACAGATCCAT 58.012 45.455 19.38 0.00 0.00 3.41
2126 2447 3.458044 ACAGAGTACTCCACAGATCCA 57.542 47.619 19.38 0.00 0.00 3.41
2127 2448 5.240623 CAGATACAGAGTACTCCACAGATCC 59.759 48.000 19.38 2.19 0.00 3.36
2128 2449 5.825679 ACAGATACAGAGTACTCCACAGATC 59.174 44.000 19.38 14.02 0.00 2.75
2129 2450 5.592282 CACAGATACAGAGTACTCCACAGAT 59.408 44.000 19.38 6.21 0.00 2.90
2130 2451 4.944317 CACAGATACAGAGTACTCCACAGA 59.056 45.833 19.38 1.36 0.00 3.41
2131 2452 4.097135 CCACAGATACAGAGTACTCCACAG 59.903 50.000 19.38 9.59 0.00 3.66
2132 2453 4.017126 CCACAGATACAGAGTACTCCACA 58.983 47.826 19.38 4.87 0.00 4.17
2133 2454 3.381908 CCCACAGATACAGAGTACTCCAC 59.618 52.174 19.38 6.74 0.00 4.02
2134 2455 3.011369 ACCCACAGATACAGAGTACTCCA 59.989 47.826 19.38 5.61 0.00 3.86
2135 2456 3.381908 CACCCACAGATACAGAGTACTCC 59.618 52.174 19.38 3.64 0.00 3.85
2136 2457 3.381908 CCACCCACAGATACAGAGTACTC 59.618 52.174 15.41 15.41 0.00 2.59
2137 2458 3.245658 ACCACCCACAGATACAGAGTACT 60.246 47.826 0.00 0.00 0.00 2.73
2138 2459 3.097614 ACCACCCACAGATACAGAGTAC 58.902 50.000 0.00 0.00 0.00 2.73
2139 2460 3.468071 ACCACCCACAGATACAGAGTA 57.532 47.619 0.00 0.00 0.00 2.59
2140 2461 2.303022 CAACCACCCACAGATACAGAGT 59.697 50.000 0.00 0.00 0.00 3.24
2141 2462 2.567169 TCAACCACCCACAGATACAGAG 59.433 50.000 0.00 0.00 0.00 3.35
2142 2463 2.301870 GTCAACCACCCACAGATACAGA 59.698 50.000 0.00 0.00 0.00 3.41
2169 2490 4.809193 TGTCTAACTGAGCTCTGGGATAT 58.191 43.478 22.75 7.67 0.00 1.63
2292 2614 5.695851 AAACGCATCAGAAAAATGAGACT 57.304 34.783 0.00 0.00 31.44 3.24
2309 2631 4.213482 AGACAAACTGAATGAGGTAAACGC 59.787 41.667 0.00 0.00 0.00 4.84
2315 2637 9.911788 ATATGAATTAGACAAACTGAATGAGGT 57.088 29.630 0.00 0.00 0.00 3.85
2350 2672 9.010029 GGAGTTTAGATGTGACATCCTTAAAAA 57.990 33.333 21.05 11.39 0.00 1.94
2351 2673 7.610305 GGGAGTTTAGATGTGACATCCTTAAAA 59.390 37.037 21.05 13.52 0.00 1.52
2352 2674 7.110155 GGGAGTTTAGATGTGACATCCTTAAA 58.890 38.462 21.05 16.39 0.00 1.52
2353 2675 6.214615 TGGGAGTTTAGATGTGACATCCTTAA 59.785 38.462 21.05 11.73 0.00 1.85
2354 2676 5.724370 TGGGAGTTTAGATGTGACATCCTTA 59.276 40.000 21.05 6.22 0.00 2.69
2355 2677 4.536090 TGGGAGTTTAGATGTGACATCCTT 59.464 41.667 21.05 7.22 0.00 3.36
2356 2678 4.080863 GTGGGAGTTTAGATGTGACATCCT 60.081 45.833 21.05 11.37 0.00 3.24
2357 2679 4.192317 GTGGGAGTTTAGATGTGACATCC 58.808 47.826 21.05 6.28 0.00 3.51
2358 2680 4.832248 TGTGGGAGTTTAGATGTGACATC 58.168 43.478 17.46 17.46 0.00 3.06
2359 2681 4.908601 TGTGGGAGTTTAGATGTGACAT 57.091 40.909 0.00 0.00 0.00 3.06
2360 2682 4.102524 ACTTGTGGGAGTTTAGATGTGACA 59.897 41.667 0.00 0.00 0.00 3.58
2361 2683 4.642429 ACTTGTGGGAGTTTAGATGTGAC 58.358 43.478 0.00 0.00 0.00 3.67
2362 2684 4.974645 ACTTGTGGGAGTTTAGATGTGA 57.025 40.909 0.00 0.00 0.00 3.58
2372 2694 9.998106 GTTGATACATTATATACTTGTGGGAGT 57.002 33.333 7.47 0.00 0.00 3.85
2373 2695 9.996554 TGTTGATACATTATATACTTGTGGGAG 57.003 33.333 7.47 0.00 0.00 4.30
2424 2746 7.639113 TTCACTCTGTTTGTGGTCTATTTTT 57.361 32.000 0.00 0.00 36.21 1.94
2425 2747 7.639113 TTTCACTCTGTTTGTGGTCTATTTT 57.361 32.000 0.00 0.00 36.21 1.82
2426 2748 7.639113 TTTTCACTCTGTTTGTGGTCTATTT 57.361 32.000 0.00 0.00 36.21 1.40
2427 2749 7.502226 TGATTTTCACTCTGTTTGTGGTCTATT 59.498 33.333 0.00 0.00 36.21 1.73
2428 2750 6.998074 TGATTTTCACTCTGTTTGTGGTCTAT 59.002 34.615 0.00 0.00 36.21 1.98
2429 2751 6.353323 TGATTTTCACTCTGTTTGTGGTCTA 58.647 36.000 0.00 0.00 36.21 2.59
2430 2752 5.192927 TGATTTTCACTCTGTTTGTGGTCT 58.807 37.500 0.00 0.00 36.21 3.85
2431 2753 5.499139 TGATTTTCACTCTGTTTGTGGTC 57.501 39.130 0.00 0.00 36.21 4.02
2432 2754 4.202050 GCTGATTTTCACTCTGTTTGTGGT 60.202 41.667 0.00 0.00 36.21 4.16
2433 2755 4.037208 AGCTGATTTTCACTCTGTTTGTGG 59.963 41.667 0.00 0.00 36.21 4.17
2434 2756 5.179045 AGCTGATTTTCACTCTGTTTGTG 57.821 39.130 0.00 0.00 36.82 3.33
2435 2757 5.841957 AAGCTGATTTTCACTCTGTTTGT 57.158 34.783 0.00 0.00 0.00 2.83
2436 2758 7.194607 TCTAAGCTGATTTTCACTCTGTTTG 57.805 36.000 0.00 0.00 0.00 2.93
2437 2759 7.446625 ACATCTAAGCTGATTTTCACTCTGTTT 59.553 33.333 0.00 0.00 0.00 2.83
2438 2760 6.939163 ACATCTAAGCTGATTTTCACTCTGTT 59.061 34.615 0.00 0.00 0.00 3.16
2439 2761 6.471146 ACATCTAAGCTGATTTTCACTCTGT 58.529 36.000 0.00 0.00 0.00 3.41
2440 2762 6.981762 ACATCTAAGCTGATTTTCACTCTG 57.018 37.500 0.00 0.00 0.00 3.35
2441 2763 8.097038 TGTAACATCTAAGCTGATTTTCACTCT 58.903 33.333 0.00 0.00 0.00 3.24
2442 2764 8.256611 TGTAACATCTAAGCTGATTTTCACTC 57.743 34.615 0.00 0.00 0.00 3.51
2443 2765 8.798859 ATGTAACATCTAAGCTGATTTTCACT 57.201 30.769 0.00 0.00 0.00 3.41
2452 2774 9.973450 ACATCTAGTTATGTAACATCTAAGCTG 57.027 33.333 5.77 0.96 38.31 4.24
2453 2775 9.973450 CACATCTAGTTATGTAACATCTAAGCT 57.027 33.333 5.77 0.00 38.01 3.74
2454 2776 9.751542 ACACATCTAGTTATGTAACATCTAAGC 57.248 33.333 5.77 0.00 38.01 3.09
2457 2779 9.642343 AGGACACATCTAGTTATGTAACATCTA 57.358 33.333 5.77 0.00 38.01 1.98
2458 2780 8.540507 AGGACACATCTAGTTATGTAACATCT 57.459 34.615 5.77 0.00 38.01 2.90
2459 2781 9.900710 CTAGGACACATCTAGTTATGTAACATC 57.099 37.037 5.77 0.00 38.01 3.06
2460 2782 9.642343 TCTAGGACACATCTAGTTATGTAACAT 57.358 33.333 5.77 0.00 38.01 2.71
2461 2783 8.900781 GTCTAGGACACATCTAGTTATGTAACA 58.099 37.037 5.77 0.00 38.01 2.41
2462 2784 8.900781 TGTCTAGGACACATCTAGTTATGTAAC 58.099 37.037 0.00 0.00 38.01 2.50
2463 2785 9.121658 CTGTCTAGGACACATCTAGTTATGTAA 57.878 37.037 0.00 0.00 38.01 2.41
2464 2786 8.491958 TCTGTCTAGGACACATCTAGTTATGTA 58.508 37.037 0.00 0.00 38.01 2.29
2465 2787 7.283580 GTCTGTCTAGGACACATCTAGTTATGT 59.716 40.741 0.00 0.00 40.75 2.29
2466 2788 7.255312 GGTCTGTCTAGGACACATCTAGTTATG 60.255 44.444 0.00 0.00 37.67 1.90
2467 2789 6.773685 GGTCTGTCTAGGACACATCTAGTTAT 59.226 42.308 0.00 0.00 37.67 1.89
2468 2790 6.120905 GGTCTGTCTAGGACACATCTAGTTA 58.879 44.000 0.00 0.00 37.67 2.24
2469 2791 4.951094 GGTCTGTCTAGGACACATCTAGTT 59.049 45.833 0.00 0.00 37.67 2.24
2470 2792 4.528920 GGTCTGTCTAGGACACATCTAGT 58.471 47.826 0.00 0.00 37.67 2.57
2471 2793 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
2472 2794 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
2473 2795 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
2474 2796 2.691011 GAGGGTCTGTCTAGGACACATC 59.309 54.545 3.18 0.00 39.36 3.06
2475 2797 2.313342 AGAGGGTCTGTCTAGGACACAT 59.687 50.000 3.18 0.00 39.36 3.21
2476 2798 1.711375 AGAGGGTCTGTCTAGGACACA 59.289 52.381 3.18 0.00 39.36 3.72
2477 2799 2.517998 AGAGGGTCTGTCTAGGACAC 57.482 55.000 0.00 0.00 37.67 3.67
2478 2800 3.191273 AGTAGAGGGTCTGTCTAGGACA 58.809 50.000 0.43 0.43 40.50 4.02
2479 2801 3.937778 AGTAGAGGGTCTGTCTAGGAC 57.062 52.381 0.00 0.00 0.00 3.85
2480 2802 3.850774 TGAAGTAGAGGGTCTGTCTAGGA 59.149 47.826 0.00 0.00 0.00 2.94
2481 2803 4.237976 TGAAGTAGAGGGTCTGTCTAGG 57.762 50.000 0.00 0.00 0.00 3.02
2482 2804 6.126409 AGAATGAAGTAGAGGGTCTGTCTAG 58.874 44.000 0.00 0.00 0.00 2.43
2483 2805 6.080969 AGAATGAAGTAGAGGGTCTGTCTA 57.919 41.667 0.00 0.00 0.00 2.59
2484 2806 4.941713 AGAATGAAGTAGAGGGTCTGTCT 58.058 43.478 0.00 0.00 0.00 3.41
2485 2807 5.889289 AGTAGAATGAAGTAGAGGGTCTGTC 59.111 44.000 0.00 0.00 0.00 3.51
2486 2808 5.833340 AGTAGAATGAAGTAGAGGGTCTGT 58.167 41.667 0.00 0.00 0.00 3.41
2487 2809 7.040062 CCATAGTAGAATGAAGTAGAGGGTCTG 60.040 44.444 0.00 0.00 0.00 3.51
2488 2810 7.007723 CCATAGTAGAATGAAGTAGAGGGTCT 58.992 42.308 0.00 0.00 0.00 3.85
2489 2811 6.778559 ACCATAGTAGAATGAAGTAGAGGGTC 59.221 42.308 0.00 0.00 0.00 4.46
2490 2812 6.684538 ACCATAGTAGAATGAAGTAGAGGGT 58.315 40.000 0.00 0.00 0.00 4.34
2491 2813 7.604657 AACCATAGTAGAATGAAGTAGAGGG 57.395 40.000 0.00 0.00 0.00 4.30
2492 2814 9.535878 GAAAACCATAGTAGAATGAAGTAGAGG 57.464 37.037 0.00 0.00 0.00 3.69
2511 2833 5.703730 ATCCGGTAATAGGAAGAAAACCA 57.296 39.130 0.00 0.00 41.69 3.67
2513 2835 8.074370 GCAATTATCCGGTAATAGGAAGAAAAC 58.926 37.037 0.00 0.00 41.69 2.43
2529 2851 1.711060 AACGCGTGGGCAATTATCCG 61.711 55.000 14.98 0.00 39.92 4.18
2530 2852 0.248458 CAACGCGTGGGCAATTATCC 60.248 55.000 14.98 0.00 39.92 2.59
2531 2853 0.450184 ACAACGCGTGGGCAATTATC 59.550 50.000 19.66 0.00 39.92 1.75
2598 2920 7.418483 CCTTGGGTTGGTCTCATTTTTCTAAAA 60.418 37.037 0.00 0.00 0.00 1.52
2602 2924 3.897505 CCTTGGGTTGGTCTCATTTTTCT 59.102 43.478 0.00 0.00 0.00 2.52
2603 2925 3.006859 CCCTTGGGTTGGTCTCATTTTTC 59.993 47.826 0.00 0.00 0.00 2.29
2614 3087 1.774300 AGGTTAGCCCTTGGGTTGG 59.226 57.895 7.61 0.00 42.73 3.77
2624 3097 1.244816 AAAGCCAACGAAGGTTAGCC 58.755 50.000 0.00 0.00 40.99 3.93
2625 3098 3.364889 AAAAAGCCAACGAAGGTTAGC 57.635 42.857 0.00 0.00 40.49 3.09
2654 3127 1.941812 CAGTGCTCGCGGAGTTTTT 59.058 52.632 6.13 0.00 31.39 1.94
2655 3128 2.607892 GCAGTGCTCGCGGAGTTTT 61.608 57.895 8.18 0.00 31.39 2.43
2656 3129 3.044305 GCAGTGCTCGCGGAGTTT 61.044 61.111 8.18 0.00 31.39 2.66
2665 3138 2.171940 CTTTGACGCGCAGTGCTC 59.828 61.111 14.33 3.85 45.12 4.26
2666 3139 4.017877 GCTTTGACGCGCAGTGCT 62.018 61.111 14.33 0.00 45.12 4.40
2676 3149 0.031585 GTTCAAACCCCGGCTTTGAC 59.968 55.000 19.77 13.43 37.36 3.18
2677 3150 0.106419 AGTTCAAACCCCGGCTTTGA 60.106 50.000 17.31 17.31 36.14 2.69
2678 3151 0.313987 GAGTTCAAACCCCGGCTTTG 59.686 55.000 13.97 13.97 0.00 2.77
2679 3152 0.826256 GGAGTTCAAACCCCGGCTTT 60.826 55.000 0.00 0.00 0.00 3.51
2680 3153 1.228459 GGAGTTCAAACCCCGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
2681 3154 2.434774 GGAGTTCAAACCCCGGCT 59.565 61.111 0.00 0.00 0.00 5.52
2682 3155 3.053896 CGGAGTTCAAACCCCGGC 61.054 66.667 7.85 0.00 45.22 6.13
2685 3158 1.602605 CCACCGGAGTTCAAACCCC 60.603 63.158 9.46 0.00 0.00 4.95
2686 3159 1.602605 CCCACCGGAGTTCAAACCC 60.603 63.158 9.46 0.00 0.00 4.11
2687 3160 2.265904 GCCCACCGGAGTTCAAACC 61.266 63.158 9.46 0.00 0.00 3.27
2688 3161 1.228154 AGCCCACCGGAGTTCAAAC 60.228 57.895 9.46 0.00 0.00 2.93
2690 3163 2.429930 CAGCCCACCGGAGTTCAA 59.570 61.111 9.46 0.00 0.00 2.69
2719 3192 3.988050 TATGGGGAAGACGGGGCGT 62.988 63.158 0.00 0.00 45.10 5.68
2720 3193 2.052047 ATTATGGGGAAGACGGGGCG 62.052 60.000 0.00 0.00 0.00 6.13
2721 3194 0.185175 AATTATGGGGAAGACGGGGC 59.815 55.000 0.00 0.00 0.00 5.80
2722 3195 2.440253 TGTAATTATGGGGAAGACGGGG 59.560 50.000 0.00 0.00 0.00 5.73
2723 3196 3.849563 TGTAATTATGGGGAAGACGGG 57.150 47.619 0.00 0.00 0.00 5.28
2724 3197 5.825679 TGAAATGTAATTATGGGGAAGACGG 59.174 40.000 0.00 0.00 33.67 4.79
2725 3198 6.935741 TGAAATGTAATTATGGGGAAGACG 57.064 37.500 0.00 0.00 33.67 4.18
2887 3683 6.524586 GCTTCTCATTTTTGATTGACTTACCG 59.475 38.462 0.00 0.00 0.00 4.02
2899 3695 2.669391 GCACGAGGGCTTCTCATTTTTG 60.669 50.000 0.00 0.00 42.55 2.44
2977 3773 0.178987 GACCATAGGAGAGGAGGCGA 60.179 60.000 0.00 0.00 0.00 5.54
2978 3774 1.182385 GGACCATAGGAGAGGAGGCG 61.182 65.000 0.00 0.00 0.00 5.52
3032 3828 2.033602 GTTTGCAGCCCTACCGGT 59.966 61.111 13.98 13.98 0.00 5.28
3037 3833 1.080093 CGACTCGTTTGCAGCCCTA 60.080 57.895 0.00 0.00 0.00 3.53
3041 3837 0.161870 GAACTCGACTCGTTTGCAGC 59.838 55.000 0.00 0.00 0.00 5.25
3042 3838 0.431233 CGAACTCGACTCGTTTGCAG 59.569 55.000 0.00 0.00 43.02 4.41
3043 3839 0.029700 TCGAACTCGACTCGTTTGCA 59.970 50.000 10.93 0.00 44.22 4.08
3044 3840 0.703466 CTCGAACTCGACTCGTTTGC 59.297 55.000 10.93 0.00 44.22 3.68
3045 3841 0.703466 GCTCGAACTCGACTCGTTTG 59.297 55.000 10.93 4.86 44.22 2.93
3046 3842 0.725118 CGCTCGAACTCGACTCGTTT 60.725 55.000 10.93 0.00 44.22 3.60
3047 3843 1.154450 CGCTCGAACTCGACTCGTT 60.154 57.895 10.93 0.53 44.22 3.85
3048 3844 2.475158 CGCTCGAACTCGACTCGT 59.525 61.111 10.93 0.00 44.22 4.18
3049 3845 2.276743 CCGCTCGAACTCGACTCG 60.277 66.667 5.93 5.93 44.22 4.18
3050 3846 2.100603 CCCGCTCGAACTCGACTC 59.899 66.667 0.00 0.00 44.22 3.36
3051 3847 2.266627 AACCCGCTCGAACTCGACT 61.267 57.895 0.00 0.00 44.22 4.18
3052 3848 2.087009 CAACCCGCTCGAACTCGAC 61.087 63.158 0.00 0.00 44.22 4.20
3054 3850 2.809601 CCAACCCGCTCGAACTCG 60.810 66.667 0.00 0.00 41.45 4.18
3055 3851 1.737008 GACCAACCCGCTCGAACTC 60.737 63.158 0.00 0.00 0.00 3.01
3056 3852 0.896940 TAGACCAACCCGCTCGAACT 60.897 55.000 0.00 0.00 0.00 3.01
3057 3853 0.458025 CTAGACCAACCCGCTCGAAC 60.458 60.000 0.00 0.00 0.00 3.95
3058 3854 1.601419 CCTAGACCAACCCGCTCGAA 61.601 60.000 0.00 0.00 0.00 3.71
3059 3855 2.050350 CCTAGACCAACCCGCTCGA 61.050 63.158 0.00 0.00 0.00 4.04
3060 3856 2.494918 CCTAGACCAACCCGCTCG 59.505 66.667 0.00 0.00 0.00 5.03
3061 3857 2.187163 GCCTAGACCAACCCGCTC 59.813 66.667 0.00 0.00 0.00 5.03
3062 3858 2.284699 AGCCTAGACCAACCCGCT 60.285 61.111 0.00 0.00 0.00 5.52
3063 3859 2.187163 GAGCCTAGACCAACCCGC 59.813 66.667 0.00 0.00 0.00 6.13
3064 3860 1.517832 CTGAGCCTAGACCAACCCG 59.482 63.158 0.00 0.00 0.00 5.28
3065 3861 1.222113 GCTGAGCCTAGACCAACCC 59.778 63.158 0.00 0.00 0.00 4.11
3066 3862 0.176910 GAGCTGAGCCTAGACCAACC 59.823 60.000 0.00 0.00 0.00 3.77
3067 3863 0.898320 TGAGCTGAGCCTAGACCAAC 59.102 55.000 0.00 0.00 0.00 3.77
3068 3864 1.276421 GTTGAGCTGAGCCTAGACCAA 59.724 52.381 0.00 0.00 0.00 3.67
3069 3865 0.898320 GTTGAGCTGAGCCTAGACCA 59.102 55.000 0.00 0.00 0.00 4.02
3070 3866 1.136110 GAGTTGAGCTGAGCCTAGACC 59.864 57.143 0.00 0.00 0.00 3.85
3071 3867 1.202245 CGAGTTGAGCTGAGCCTAGAC 60.202 57.143 0.00 0.00 0.00 2.59
3072 3868 1.098869 CGAGTTGAGCTGAGCCTAGA 58.901 55.000 0.00 0.00 0.00 2.43
3073 3869 0.814457 ACGAGTTGAGCTGAGCCTAG 59.186 55.000 0.00 0.00 0.00 3.02
3074 3870 1.743958 GTACGAGTTGAGCTGAGCCTA 59.256 52.381 0.00 0.00 0.00 3.93
3075 3871 0.528470 GTACGAGTTGAGCTGAGCCT 59.472 55.000 0.00 0.00 0.00 4.58
3076 3872 0.528470 AGTACGAGTTGAGCTGAGCC 59.472 55.000 0.00 0.00 0.00 4.70
3077 3873 3.489180 TTAGTACGAGTTGAGCTGAGC 57.511 47.619 0.00 0.00 0.00 4.26
3078 3874 6.237332 CGAATTTTAGTACGAGTTGAGCTGAG 60.237 42.308 0.00 0.00 0.00 3.35
3079 3875 5.571741 CGAATTTTAGTACGAGTTGAGCTGA 59.428 40.000 0.00 0.00 0.00 4.26
3080 3876 5.571741 TCGAATTTTAGTACGAGTTGAGCTG 59.428 40.000 0.00 0.00 0.00 4.24
3081 3877 5.706916 TCGAATTTTAGTACGAGTTGAGCT 58.293 37.500 0.00 0.00 0.00 4.09
3082 3878 6.010660 CTCGAATTTTAGTACGAGTTGAGC 57.989 41.667 0.00 0.00 44.37 4.26
3089 3885 4.491676 AGCTTGCTCGAATTTTAGTACGA 58.508 39.130 0.00 0.00 0.00 3.43
3090 3886 4.326278 TGAGCTTGCTCGAATTTTAGTACG 59.674 41.667 16.48 0.00 0.00 3.67
3091 3887 5.779806 TGAGCTTGCTCGAATTTTAGTAC 57.220 39.130 16.48 0.00 0.00 2.73
3092 3888 6.795098 TTTGAGCTTGCTCGAATTTTAGTA 57.205 33.333 18.31 0.00 0.00 1.82
3093 3889 5.689383 TTTGAGCTTGCTCGAATTTTAGT 57.311 34.783 18.31 0.00 0.00 2.24
3094 3890 6.583806 ACATTTTGAGCTTGCTCGAATTTTAG 59.416 34.615 21.59 13.69 0.00 1.85
3095 3891 6.363088 CACATTTTGAGCTTGCTCGAATTTTA 59.637 34.615 21.59 10.50 0.00 1.52
3096 3892 5.176223 CACATTTTGAGCTTGCTCGAATTTT 59.824 36.000 21.59 11.44 0.00 1.82
3097 3893 4.682860 CACATTTTGAGCTTGCTCGAATTT 59.317 37.500 21.59 12.70 0.00 1.82
3098 3894 4.232221 CACATTTTGAGCTTGCTCGAATT 58.768 39.130 21.59 16.50 0.00 2.17
3099 3895 3.829948 CACATTTTGAGCTTGCTCGAAT 58.170 40.909 21.59 17.57 0.00 3.34
3100 3896 2.605338 GCACATTTTGAGCTTGCTCGAA 60.605 45.455 18.31 18.31 31.18 3.71
3101 3897 1.069022 GCACATTTTGAGCTTGCTCGA 60.069 47.619 16.48 12.63 31.18 4.04
3102 3898 1.334054 GCACATTTTGAGCTTGCTCG 58.666 50.000 16.48 5.69 31.18 5.03
3103 3899 1.069022 TCGCACATTTTGAGCTTGCTC 60.069 47.619 15.01 15.01 31.68 4.26
3104 3900 0.953727 TCGCACATTTTGAGCTTGCT 59.046 45.000 3.07 0.00 31.68 3.91
3105 3901 1.717645 CTTCGCACATTTTGAGCTTGC 59.282 47.619 0.00 0.00 31.68 4.01
3106 3902 1.717645 GCTTCGCACATTTTGAGCTTG 59.282 47.619 0.00 0.00 31.68 4.01
3107 3903 1.610522 AGCTTCGCACATTTTGAGCTT 59.389 42.857 0.00 0.00 31.68 3.74
3108 3904 1.198637 GAGCTTCGCACATTTTGAGCT 59.801 47.619 0.00 0.00 31.68 4.09
3109 3905 1.069022 TGAGCTTCGCACATTTTGAGC 60.069 47.619 0.00 0.00 0.00 4.26
3110 3906 2.975410 TGAGCTTCGCACATTTTGAG 57.025 45.000 0.00 0.00 0.00 3.02
3111 3907 2.030893 CCTTGAGCTTCGCACATTTTGA 60.031 45.455 0.00 0.00 0.00 2.69
3112 3908 2.287788 ACCTTGAGCTTCGCACATTTTG 60.288 45.455 0.00 0.00 0.00 2.44
3113 3909 1.956477 ACCTTGAGCTTCGCACATTTT 59.044 42.857 0.00 0.00 0.00 1.82
3114 3910 1.537202 GACCTTGAGCTTCGCACATTT 59.463 47.619 0.00 0.00 0.00 2.32
3115 3911 1.160137 GACCTTGAGCTTCGCACATT 58.840 50.000 0.00 0.00 0.00 2.71
3116 3912 1.016130 CGACCTTGAGCTTCGCACAT 61.016 55.000 0.00 0.00 0.00 3.21
3117 3913 1.664649 CGACCTTGAGCTTCGCACA 60.665 57.895 0.00 0.00 0.00 4.57
3118 3914 1.347817 CTCGACCTTGAGCTTCGCAC 61.348 60.000 0.00 0.00 32.70 5.34
3119 3915 1.080501 CTCGACCTTGAGCTTCGCA 60.081 57.895 0.00 0.00 32.70 5.10
3120 3916 3.773974 CTCGACCTTGAGCTTCGC 58.226 61.111 0.00 0.00 32.70 4.70
3126 3922 0.037882 TTCTGCAGCTCGACCTTGAG 60.038 55.000 9.47 0.00 39.05 3.02
3127 3923 0.392706 TTTCTGCAGCTCGACCTTGA 59.607 50.000 9.47 0.00 0.00 3.02
3128 3924 0.795085 CTTTCTGCAGCTCGACCTTG 59.205 55.000 9.47 0.00 0.00 3.61
3129 3925 0.394565 ACTTTCTGCAGCTCGACCTT 59.605 50.000 9.47 0.00 0.00 3.50
3130 3926 0.320247 CACTTTCTGCAGCTCGACCT 60.320 55.000 9.47 0.00 0.00 3.85
3131 3927 1.294659 CCACTTTCTGCAGCTCGACC 61.295 60.000 9.47 0.00 0.00 4.79
3132 3928 1.905922 GCCACTTTCTGCAGCTCGAC 61.906 60.000 9.47 0.00 0.00 4.20
3133 3929 1.669115 GCCACTTTCTGCAGCTCGA 60.669 57.895 9.47 0.00 0.00 4.04
3134 3930 1.633852 GAGCCACTTTCTGCAGCTCG 61.634 60.000 9.47 1.42 40.43 5.03
3135 3931 2.169842 GAGCCACTTTCTGCAGCTC 58.830 57.895 9.47 7.52 42.74 4.09
3136 3932 0.037877 ATGAGCCACTTTCTGCAGCT 59.962 50.000 9.47 0.40 36.25 4.24
3137 3933 0.170561 CATGAGCCACTTTCTGCAGC 59.829 55.000 9.47 0.00 0.00 5.25
3138 3934 0.170561 GCATGAGCCACTTTCTGCAG 59.829 55.000 7.63 7.63 33.58 4.41
3139 3935 0.251033 AGCATGAGCCACTTTCTGCA 60.251 50.000 0.00 0.00 43.56 4.41
3140 3936 0.450983 GAGCATGAGCCACTTTCTGC 59.549 55.000 0.00 0.00 43.56 4.26
3141 3937 1.817357 TGAGCATGAGCCACTTTCTG 58.183 50.000 0.00 0.00 43.56 3.02
3142 3938 2.157738 GTTGAGCATGAGCCACTTTCT 58.842 47.619 0.00 0.00 43.56 2.52
3143 3939 2.157738 AGTTGAGCATGAGCCACTTTC 58.842 47.619 0.00 0.00 43.56 2.62
3144 3940 2.283145 AGTTGAGCATGAGCCACTTT 57.717 45.000 0.00 0.00 43.56 2.66
3145 3941 1.884579 CAAGTTGAGCATGAGCCACTT 59.115 47.619 0.00 0.00 43.56 3.16
3146 3942 1.202855 ACAAGTTGAGCATGAGCCACT 60.203 47.619 10.54 0.00 43.56 4.00
3147 3943 1.242076 ACAAGTTGAGCATGAGCCAC 58.758 50.000 10.54 0.00 43.56 5.01
3148 3944 2.813754 GTTACAAGTTGAGCATGAGCCA 59.186 45.455 10.54 0.00 43.56 4.75
3149 3945 2.159653 CGTTACAAGTTGAGCATGAGCC 60.160 50.000 10.54 0.00 43.56 4.70
3150 3946 2.736721 TCGTTACAAGTTGAGCATGAGC 59.263 45.455 10.54 0.00 42.56 4.26
3151 3947 4.867047 AGATCGTTACAAGTTGAGCATGAG 59.133 41.667 10.54 0.00 0.00 2.90
3152 3948 4.820897 AGATCGTTACAAGTTGAGCATGA 58.179 39.130 10.54 4.19 0.00 3.07
3153 3949 4.259570 CGAGATCGTTACAAGTTGAGCATG 60.260 45.833 10.54 0.00 34.11 4.06
3154 3950 3.859961 CGAGATCGTTACAAGTTGAGCAT 59.140 43.478 10.54 0.00 34.11 3.79
3155 3951 3.057806 TCGAGATCGTTACAAGTTGAGCA 60.058 43.478 10.54 0.00 40.80 4.26
3156 3952 3.499048 TCGAGATCGTTACAAGTTGAGC 58.501 45.455 10.54 0.00 40.80 4.26
3157 3953 3.544285 GCTCGAGATCGTTACAAGTTGAG 59.456 47.826 18.75 0.00 40.80 3.02
3158 3954 3.190744 AGCTCGAGATCGTTACAAGTTGA 59.809 43.478 18.75 0.00 40.80 3.18
3159 3955 3.502920 AGCTCGAGATCGTTACAAGTTG 58.497 45.455 18.75 0.00 40.80 3.16
3160 3956 3.851976 AGCTCGAGATCGTTACAAGTT 57.148 42.857 18.75 0.00 40.80 2.66
3161 3957 3.940221 ACTAGCTCGAGATCGTTACAAGT 59.060 43.478 18.75 5.30 40.80 3.16
3162 3958 4.539509 ACTAGCTCGAGATCGTTACAAG 57.460 45.455 18.75 4.57 40.80 3.16
3163 3959 4.959596 AACTAGCTCGAGATCGTTACAA 57.040 40.909 17.74 0.00 40.80 2.41
3164 3960 4.493708 CGAAACTAGCTCGAGATCGTTACA 60.494 45.833 19.23 0.00 38.61 2.41
3165 3961 3.961240 CGAAACTAGCTCGAGATCGTTAC 59.039 47.826 19.23 4.39 38.61 2.50
3166 3962 3.867493 TCGAAACTAGCTCGAGATCGTTA 59.133 43.478 19.23 3.31 40.25 3.18
3167 3963 2.676839 TCGAAACTAGCTCGAGATCGTT 59.323 45.455 18.75 16.10 40.25 3.85
3168 3964 2.277969 TCGAAACTAGCTCGAGATCGT 58.722 47.619 18.75 9.77 40.25 3.73
3178 3974 6.439599 TCATCTTATGTAGCTCGAAACTAGC 58.560 40.000 0.00 0.00 40.40 3.42
3179 3975 9.469807 AAATCATCTTATGTAGCTCGAAACTAG 57.530 33.333 0.00 0.00 0.00 2.57
3180 3976 9.817809 AAAATCATCTTATGTAGCTCGAAACTA 57.182 29.630 0.00 0.00 0.00 2.24
3181 3977 8.723942 AAAATCATCTTATGTAGCTCGAAACT 57.276 30.769 0.00 0.00 0.00 2.66
3218 4014 8.576442 GCCTATCTAGCTTTAAAATTTGCCATA 58.424 33.333 0.00 0.00 0.00 2.74
3219 4015 7.436933 GCCTATCTAGCTTTAAAATTTGCCAT 58.563 34.615 0.00 0.00 0.00 4.40
3220 4016 6.183360 GGCCTATCTAGCTTTAAAATTTGCCA 60.183 38.462 0.00 0.00 0.00 4.92
3221 4017 6.183360 TGGCCTATCTAGCTTTAAAATTTGCC 60.183 38.462 3.32 0.00 0.00 4.52
3222 4018 6.697455 GTGGCCTATCTAGCTTTAAAATTTGC 59.303 38.462 3.32 0.00 0.00 3.68
3223 4019 7.771183 TGTGGCCTATCTAGCTTTAAAATTTG 58.229 34.615 3.32 0.00 0.00 2.32
3224 4020 7.954666 TGTGGCCTATCTAGCTTTAAAATTT 57.045 32.000 3.32 0.00 0.00 1.82
3225 4021 7.396055 TGTTGTGGCCTATCTAGCTTTAAAATT 59.604 33.333 3.32 0.00 0.00 1.82
3226 4022 6.889722 TGTTGTGGCCTATCTAGCTTTAAAAT 59.110 34.615 3.32 0.00 0.00 1.82
3227 4023 6.242396 TGTTGTGGCCTATCTAGCTTTAAAA 58.758 36.000 3.32 0.00 0.00 1.52
3228 4024 5.811190 TGTTGTGGCCTATCTAGCTTTAAA 58.189 37.500 3.32 0.00 0.00 1.52
3229 4025 5.188948 TCTGTTGTGGCCTATCTAGCTTTAA 59.811 40.000 3.32 0.00 0.00 1.52
3230 4026 4.714802 TCTGTTGTGGCCTATCTAGCTTTA 59.285 41.667 3.32 0.00 0.00 1.85
3231 4027 3.519510 TCTGTTGTGGCCTATCTAGCTTT 59.480 43.478 3.32 0.00 0.00 3.51
3232 4028 3.107601 TCTGTTGTGGCCTATCTAGCTT 58.892 45.455 3.32 0.00 0.00 3.74
3233 4029 2.752030 TCTGTTGTGGCCTATCTAGCT 58.248 47.619 3.32 0.00 0.00 3.32
3234 4030 3.198872 GTTCTGTTGTGGCCTATCTAGC 58.801 50.000 3.32 0.00 0.00 3.42
3235 4031 4.160439 TCTGTTCTGTTGTGGCCTATCTAG 59.840 45.833 3.32 0.00 0.00 2.43
3236 4032 4.093743 TCTGTTCTGTTGTGGCCTATCTA 58.906 43.478 3.32 0.00 0.00 1.98
3237 4033 2.906389 TCTGTTCTGTTGTGGCCTATCT 59.094 45.455 3.32 0.00 0.00 1.98
3238 4034 3.334583 TCTGTTCTGTTGTGGCCTATC 57.665 47.619 3.32 0.00 0.00 2.08
3239 4035 3.788227 TTCTGTTCTGTTGTGGCCTAT 57.212 42.857 3.32 0.00 0.00 2.57
3240 4036 3.569194 TTTCTGTTCTGTTGTGGCCTA 57.431 42.857 3.32 0.00 0.00 3.93
3241 4037 2.435372 TTTCTGTTCTGTTGTGGCCT 57.565 45.000 3.32 0.00 0.00 5.19
3242 4038 3.518634 TTTTTCTGTTCTGTTGTGGCC 57.481 42.857 0.00 0.00 0.00 5.36
3243 4039 4.504097 GTGATTTTTCTGTTCTGTTGTGGC 59.496 41.667 0.00 0.00 0.00 5.01
3244 4040 5.894807 AGTGATTTTTCTGTTCTGTTGTGG 58.105 37.500 0.00 0.00 0.00 4.17
3270 4066 9.273016 TCACTTGAGAAAGAATAAGTCGAATTT 57.727 29.630 2.37 0.00 31.47 1.82
3271 4067 8.833231 TCACTTGAGAAAGAATAAGTCGAATT 57.167 30.769 2.72 2.72 31.47 2.17
3272 4068 8.833231 TTCACTTGAGAAAGAATAAGTCGAAT 57.167 30.769 0.00 0.00 31.47 3.34
3273 4069 8.141909 TCTTCACTTGAGAAAGAATAAGTCGAA 58.858 33.333 0.00 0.00 31.47 3.71
3274 4070 7.658261 TCTTCACTTGAGAAAGAATAAGTCGA 58.342 34.615 0.00 0.00 31.47 4.20
3275 4071 7.875316 TCTTCACTTGAGAAAGAATAAGTCG 57.125 36.000 0.00 0.00 31.47 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.