Multiple sequence alignment - TraesCS4A01G041000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G041000 chr4A 100.000 7075 0 0 1 7075 34255989 34248915 0.000000e+00 13066.0
1 TraesCS4A01G041000 chr4A 95.146 103 5 0 6973 7075 455923855 455923753 5.680000e-36 163.0
2 TraesCS4A01G041000 chr4D 93.504 2771 114 31 19 2740 432938491 432935738 0.000000e+00 4060.0
3 TraesCS4A01G041000 chr4D 90.135 1855 121 32 4497 6318 432933363 432931538 0.000000e+00 2355.0
4 TraesCS4A01G041000 chr4D 95.900 1000 33 7 2738 3729 432935710 432934711 0.000000e+00 1613.0
5 TraesCS4A01G041000 chr4D 94.379 765 20 10 3757 4501 432934375 432933614 0.000000e+00 1153.0
6 TraesCS4A01G041000 chr4D 94.118 51 2 1 1230 1280 432937333 432937284 7.610000e-10 76.8
7 TraesCS4A01G041000 chr4B 92.290 2218 110 24 557 2740 531056563 531054373 0.000000e+00 3092.0
8 TraesCS4A01G041000 chr4B 95.959 1064 26 8 4497 5551 531052062 531051007 0.000000e+00 1711.0
9 TraesCS4A01G041000 chr4B 95.584 1019 25 7 2738 3744 531054345 531053335 0.000000e+00 1615.0
10 TraesCS4A01G041000 chr4B 92.549 765 29 4 3757 4501 531053063 531052307 0.000000e+00 1072.0
11 TraesCS4A01G041000 chr4B 90.824 752 38 6 5615 6349 531050715 531049978 0.000000e+00 977.0
12 TraesCS4A01G041000 chr4B 87.640 623 57 13 1 613 531057163 531056551 0.000000e+00 706.0
13 TraesCS4A01G041000 chr4B 86.819 349 27 4 6644 6973 531049668 531049320 8.670000e-99 372.0
14 TraesCS4A01G041000 chr4B 87.407 270 18 4 6386 6641 531049978 531049711 5.370000e-76 296.0
15 TraesCS4A01G041000 chr4B 87.826 115 7 1 5561 5675 531050820 531050713 2.070000e-25 128.0
16 TraesCS4A01G041000 chr4B 90.566 53 4 1 1229 1280 531055979 531055927 1.270000e-07 69.4
17 TraesCS4A01G041000 chr6D 79.186 442 53 27 25 452 450637915 450638331 3.250000e-68 270.0
18 TraesCS4A01G041000 chr6D 94.286 105 6 0 6971 7075 382124280 382124176 2.040000e-35 161.0
19 TraesCS4A01G041000 chrUn 77.637 474 58 25 21 452 65834938 65834471 1.970000e-60 244.0
20 TraesCS4A01G041000 chrUn 84.404 218 22 11 21 229 345534738 345534524 3.350000e-48 204.0
21 TraesCS4A01G041000 chrUn 84.404 218 22 11 21 229 388625768 388625554 3.350000e-48 204.0
22 TraesCS4A01G041000 chr5B 77.590 473 60 24 21 452 36795544 36796011 1.970000e-60 244.0
23 TraesCS4A01G041000 chr5B 77.590 473 60 23 21 452 36825543 36826010 1.970000e-60 244.0
24 TraesCS4A01G041000 chr5B 94.059 101 5 1 21 121 36616049 36615950 1.230000e-32 152.0
25 TraesCS4A01G041000 chr6B 76.989 465 66 33 1 454 684382867 684383301 1.990000e-55 228.0
26 TraesCS4A01G041000 chr6B 93.636 110 6 1 345 454 687831881 687831989 5.680000e-36 163.0
27 TraesCS4A01G041000 chr6B 88.235 119 14 0 13 131 456771044 456771162 7.400000e-30 143.0
28 TraesCS4A01G041000 chr6A 80.122 327 44 13 1 314 571027806 571028124 2.570000e-54 224.0
29 TraesCS4A01G041000 chr6A 94.286 105 6 0 6971 7075 136936043 136935939 2.040000e-35 161.0
30 TraesCS4A01G041000 chr5A 95.146 103 5 0 6973 7075 59140919 59141021 5.680000e-36 163.0
31 TraesCS4A01G041000 chr3B 94.340 106 6 0 6970 7075 756674847 756674952 5.680000e-36 163.0
32 TraesCS4A01G041000 chr3A 93.578 109 6 1 6967 7075 37934560 37934667 2.040000e-35 161.0
33 TraesCS4A01G041000 chr3A 94.286 105 6 0 6971 7075 720484733 720484837 2.040000e-35 161.0
34 TraesCS4A01G041000 chr1D 94.286 105 5 1 6971 7075 488678276 488678379 7.350000e-35 159.0
35 TraesCS4A01G041000 chr7D 90.083 121 12 0 343 463 549545396 549545276 2.640000e-34 158.0
36 TraesCS4A01G041000 chr7B 92.727 110 7 1 345 454 24715016 24714908 2.640000e-34 158.0
37 TraesCS4A01G041000 chr7B 89.256 121 13 0 343 463 593922119 593921999 1.230000e-32 152.0
38 TraesCS4A01G041000 chr3D 92.727 110 7 1 345 454 307677650 307677542 2.640000e-34 158.0
39 TraesCS4A01G041000 chr3D 93.396 106 7 0 6970 7075 607311582 607311687 2.640000e-34 158.0
40 TraesCS4A01G041000 chr2B 92.727 110 7 1 345 454 237057474 237057582 2.640000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G041000 chr4A 34248915 34255989 7074 True 13066.00 13066 100.0000 1 7075 1 chr4A.!!$R1 7074
1 TraesCS4A01G041000 chr4D 432931538 432938491 6953 True 1851.56 4060 93.6072 19 6318 5 chr4D.!!$R1 6299
2 TraesCS4A01G041000 chr4B 531049320 531057163 7843 True 1003.84 3092 90.7464 1 6973 10 chr4B.!!$R1 6972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 377 0.321564 CTCTCGGATGCCAACCACAA 60.322 55.000 0.00 0.0 0.00 3.33 F
684 756 0.981943 AGGGAGGTTAGGTTTCGGTG 59.018 55.000 0.00 0.0 0.00 4.94 F
729 808 1.305930 GCCTTCGGCCGAAACTTCAT 61.306 55.000 37.62 0.0 44.06 2.57 F
1463 1574 1.336887 GGTTCAGTTAGTGCTCTGCGA 60.337 52.381 0.00 0.0 0.00 5.10 F
2282 2414 2.103771 CTCCATCCCGGCATATATCCAG 59.896 54.545 0.00 0.0 33.14 3.86 F
3288 3486 0.819582 AGAATGCATTTTCCCCTGCG 59.180 50.000 14.33 0.0 41.32 5.18 F
3752 3956 0.698238 TGGGGCTTGCAATACTCAGT 59.302 50.000 0.00 0.0 0.00 3.41 F
3753 3957 1.912731 TGGGGCTTGCAATACTCAGTA 59.087 47.619 0.00 0.0 0.00 2.74 F
4989 5791 2.229302 GACTCGTCTTCTGCACTAACCT 59.771 50.000 0.00 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1641 1760 0.033601 TCACCCCAAAACAGTGCAGT 60.034 50.000 0.00 0.00 0.00 4.40 R
1987 2118 0.881118 AAAACTGCACTATGGCCACG 59.119 50.000 8.16 4.61 0.00 4.94 R
2346 2478 0.914417 CCCCCTGGGCAAGAGAACTA 60.914 60.000 7.39 0.00 35.35 2.24 R
3146 3344 0.694771 ATCTTGAGCCTCAACTGCCA 59.305 50.000 2.24 0.00 32.21 4.92 R
3749 3953 0.100682 ACGCTAGCGACACCATACTG 59.899 55.000 41.33 10.18 42.83 2.74 R
4913 5715 2.039613 GCCCTGGGGAATTCAGAGATAG 59.960 54.545 16.03 0.00 37.50 2.08 R
5558 6522 0.604780 CCTGCTGTGAACTCCACCTG 60.605 60.000 0.00 0.00 45.09 4.00 R
5559 6523 1.056700 ACCTGCTGTGAACTCCACCT 61.057 55.000 0.00 0.00 45.09 4.00 R
6241 7328 0.036010 AGCATTGGTCGGTTCTCCAG 60.036 55.000 0.00 0.00 35.05 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 1.236616 TTCATCACTTGCCAGCACGG 61.237 55.000 1.00 0.00 38.11 4.94
116 117 1.148273 ACTTGCCAGCACGGAGAAA 59.852 52.632 1.00 0.00 36.56 2.52
117 118 1.166531 ACTTGCCAGCACGGAGAAAC 61.167 55.000 1.00 0.00 36.56 2.78
125 126 3.363178 CAGCACGGAGAAACAAAAGAAC 58.637 45.455 0.00 0.00 0.00 3.01
138 139 7.644157 AGAAACAAAAGAACTCGAAAACTATGC 59.356 33.333 0.00 0.00 0.00 3.14
145 146 7.724305 AGAACTCGAAAACTATGCTTAAACA 57.276 32.000 0.00 0.00 0.00 2.83
150 151 9.744468 ACTCGAAAACTATGCTTAAACAAAAAT 57.256 25.926 0.00 0.00 0.00 1.82
171 172 7.845066 AAATTCTCGGTTAGTCTATTTGACC 57.155 36.000 0.00 0.00 46.46 4.02
173 174 4.346730 TCTCGGTTAGTCTATTTGACCCA 58.653 43.478 0.00 0.00 46.46 4.51
259 260 0.764890 CCCATTAGATCCGAGCCCAA 59.235 55.000 0.00 0.00 0.00 4.12
261 262 2.571653 CCCATTAGATCCGAGCCCAATA 59.428 50.000 0.00 0.00 0.00 1.90
262 263 3.009033 CCCATTAGATCCGAGCCCAATAA 59.991 47.826 0.00 0.00 0.00 1.40
308 309 0.510359 GAATATGAGCCGAGCGCAAG 59.490 55.000 11.47 1.89 42.18 4.01
367 377 0.321564 CTCTCGGATGCCAACCACAA 60.322 55.000 0.00 0.00 0.00 3.33
384 394 3.628646 AAGGGCTGGCACGGATGAC 62.629 63.158 2.88 0.00 36.31 3.06
465 476 4.324936 CGAGAAAGATTTCGGAACAGAGAC 59.675 45.833 0.00 0.00 41.92 3.36
466 477 4.570930 AGAAAGATTTCGGAACAGAGACC 58.429 43.478 0.00 0.00 41.92 3.85
486 500 7.729431 AGAGACCATCTGATCTGATGATTCTAA 59.271 37.037 32.62 0.03 44.71 2.10
487 501 8.438618 AGACCATCTGATCTGATGATTCTAAT 57.561 34.615 32.62 15.99 44.71 1.73
488 502 8.533657 AGACCATCTGATCTGATGATTCTAATC 58.466 37.037 32.62 20.28 44.71 1.75
489 503 7.622713 ACCATCTGATCTGATGATTCTAATCC 58.377 38.462 32.62 0.00 44.71 3.01
502 516 6.701340 TGATTCTAATCCATCTAATCCCACG 58.299 40.000 0.41 0.00 34.50 4.94
596 651 4.918201 GGCTCCGCCCTTCGATGG 62.918 72.222 10.36 10.36 44.06 3.51
684 756 0.981943 AGGGAGGTTAGGTTTCGGTG 59.018 55.000 0.00 0.00 0.00 4.94
728 807 1.964373 GCCTTCGGCCGAAACTTCA 60.964 57.895 37.62 18.03 44.06 3.02
729 808 1.305930 GCCTTCGGCCGAAACTTCAT 61.306 55.000 37.62 0.00 44.06 2.57
744 823 2.025887 ACTTCATTAACTGGGCTGGGAG 60.026 50.000 0.00 0.00 0.00 4.30
1112 1208 4.244802 CTCGCTCGACTCGCCCTC 62.245 72.222 0.00 0.00 0.00 4.30
1456 1564 4.156008 CCAGGTATTTGGTTCAGTTAGTGC 59.844 45.833 0.00 0.00 33.38 4.40
1463 1574 1.336887 GGTTCAGTTAGTGCTCTGCGA 60.337 52.381 0.00 0.00 0.00 5.10
1503 1621 3.245797 CTGAACTGATATATCGGTGCCG 58.754 50.000 24.65 16.69 45.23 5.69
1626 1745 7.017551 AGCATTTGGACATGACCCTATTATCTA 59.982 37.037 11.80 0.00 0.00 1.98
1630 1749 6.800890 TGGACATGACCCTATTATCTAGCTA 58.199 40.000 11.80 0.00 0.00 3.32
1641 1760 8.816894 CCCTATTATCTAGCTACTCCAAATTGA 58.183 37.037 0.00 0.00 0.00 2.57
1675 1801 3.054434 TGGGGTGACACTGAAGATATTGG 60.054 47.826 5.39 0.00 31.84 3.16
1715 1841 2.492088 CGCCGATCAGGGAGTTATATGA 59.508 50.000 5.87 0.00 41.48 2.15
1868 1996 4.998788 TCTGATGTCATGACGTAAGGAAG 58.001 43.478 26.04 16.03 46.39 3.46
1987 2118 4.022503 GGATTGGGCTATCTGCTTTGATTC 60.023 45.833 0.00 0.00 42.39 2.52
1992 2123 2.286654 GCTATCTGCTTTGATTCGTGGC 60.287 50.000 0.00 0.00 38.95 5.01
2282 2414 2.103771 CTCCATCCCGGCATATATCCAG 59.896 54.545 0.00 0.00 33.14 3.86
2346 2478 3.260475 TCACCGAATTCATCCACGAAT 57.740 42.857 6.22 0.00 37.20 3.34
2560 2692 9.753674 AGTTCCATTTTTCATTCTATAAGTGGA 57.246 29.630 0.00 0.00 0.00 4.02
2661 2793 3.221771 TCAAGTAGTTGTGCAAGGCATT 58.778 40.909 10.08 0.00 41.91 3.56
2973 3165 6.714810 TGATGTAACTTTATTGAAGCTGGTGT 59.285 34.615 0.00 0.00 39.04 4.16
3146 3344 2.758423 AGGTTTCACCAAAGCGAAAAGT 59.242 40.909 0.00 0.00 43.56 2.66
3182 3380 5.065914 TCAAGATCAGTCCAGTGGAAAAAG 58.934 41.667 15.09 4.25 31.38 2.27
3288 3486 0.819582 AGAATGCATTTTCCCCTGCG 59.180 50.000 14.33 0.00 41.32 5.18
3332 3534 7.947782 TCTGGGTATATTTCCTGGATACTTT 57.052 36.000 0.00 0.00 37.61 2.66
3536 3740 3.118261 TCACAAGAACAGGCAAACTCTCT 60.118 43.478 0.00 0.00 0.00 3.10
3628 3832 7.147915 ACCTGTGAATTGTTTTTGCTTTCTAGA 60.148 33.333 0.00 0.00 0.00 2.43
3744 3948 2.725221 AACATTTTTGGGGCTTGCAA 57.275 40.000 0.00 0.00 0.00 4.08
3745 3949 2.955342 ACATTTTTGGGGCTTGCAAT 57.045 40.000 0.00 0.00 0.00 3.56
3746 3950 4.363991 AACATTTTTGGGGCTTGCAATA 57.636 36.364 0.00 0.00 0.00 1.90
3747 3951 3.673902 ACATTTTTGGGGCTTGCAATAC 58.326 40.909 0.00 0.00 0.00 1.89
3748 3952 3.327464 ACATTTTTGGGGCTTGCAATACT 59.673 39.130 0.00 0.00 0.00 2.12
3749 3953 3.676291 TTTTTGGGGCTTGCAATACTC 57.324 42.857 0.00 0.00 0.00 2.59
3750 3954 2.300956 TTTGGGGCTTGCAATACTCA 57.699 45.000 0.00 0.00 0.00 3.41
3751 3955 1.838112 TTGGGGCTTGCAATACTCAG 58.162 50.000 0.00 0.00 0.00 3.35
3752 3956 0.698238 TGGGGCTTGCAATACTCAGT 59.302 50.000 0.00 0.00 0.00 3.41
3753 3957 1.912731 TGGGGCTTGCAATACTCAGTA 59.087 47.619 0.00 0.00 0.00 2.74
3754 3958 2.509548 TGGGGCTTGCAATACTCAGTAT 59.490 45.455 0.00 0.00 0.00 2.12
3755 3959 2.880890 GGGGCTTGCAATACTCAGTATG 59.119 50.000 0.00 0.00 37.54 2.39
3802 4314 8.715191 AGAACTCATCTGTGATGTATTTCTTC 57.285 34.615 7.33 2.43 36.88 2.87
4054 4566 5.896073 ATATAAACTCCAAGGACCCTGAG 57.104 43.478 0.00 0.00 0.00 3.35
4140 4652 5.882557 CCATGTCAGTTTAGAGCCAGTTAAT 59.117 40.000 0.00 0.00 0.00 1.40
4154 4666 5.414765 AGCCAGTTAATTTGCTAACCTACAC 59.585 40.000 0.00 0.00 33.06 2.90
4344 4876 5.870433 CGTACACTGACCATAACCATTTACA 59.130 40.000 0.00 0.00 0.00 2.41
4347 4879 5.885912 ACACTGACCATAACCATTTACATCC 59.114 40.000 0.00 0.00 0.00 3.51
4402 4934 6.406093 TTTCTTTTTGCGAATAATGGCATG 57.594 33.333 0.00 0.00 40.15 4.06
4491 5023 6.070424 AGCTGGCTACCTAAGTGTTACATTTA 60.070 38.462 0.66 0.66 0.00 1.40
4505 5037 9.998106 AGTGTTACATTTAGACATGAGTAGTTT 57.002 29.630 0.00 0.00 0.00 2.66
4507 5039 9.772973 TGTTACATTTAGACATGAGTAGTTTGT 57.227 29.630 0.00 0.00 0.00 2.83
4509 5041 9.990360 TTACATTTAGACATGAGTAGTTTGTCA 57.010 29.630 0.00 0.00 41.71 3.58
4604 5392 8.678199 CCCATTAGATGTTTTCTCTAACCTTTC 58.322 37.037 0.00 0.00 37.87 2.62
4605 5393 9.454859 CCATTAGATGTTTTCTCTAACCTTTCT 57.545 33.333 0.00 0.00 37.87 2.52
4747 5549 3.299503 ACTTGTTGCTTCTTTCCCATGT 58.700 40.909 0.00 0.00 0.00 3.21
4766 5568 7.037586 TCCCATGTACTTCCTGTTCTATTTCTT 60.038 37.037 0.00 0.00 0.00 2.52
4913 5715 7.425577 TTGCATGTAATCTCATAGTGTATGC 57.574 36.000 0.00 0.00 38.95 3.14
4989 5791 2.229302 GACTCGTCTTCTGCACTAACCT 59.771 50.000 0.00 0.00 0.00 3.50
5036 5838 8.325787 TCTTCTTCCTACTTTATTGGCACATTA 58.674 33.333 0.00 0.00 39.30 1.90
5057 5859 8.052748 ACATTAGAAGGTCAATGCCAAGTTATA 58.947 33.333 0.00 0.00 35.91 0.98
5106 5908 6.214399 ACAGGTGTTGTTTTTGTTAAACGAA 58.786 32.000 0.00 0.00 36.31 3.85
5117 5919 3.143728 TGTTAAACGAAGCTTTCCTCCC 58.856 45.455 0.00 0.00 0.00 4.30
5160 5963 4.655963 ACATGATGATACCAGGGTTATGC 58.344 43.478 0.00 0.00 0.00 3.14
5161 5964 4.352001 ACATGATGATACCAGGGTTATGCT 59.648 41.667 0.00 0.00 0.00 3.79
5162 5965 5.163055 ACATGATGATACCAGGGTTATGCTT 60.163 40.000 0.00 0.00 0.00 3.91
5373 6176 8.622948 AAAGGTTTTTGAGATTCTACAGGTAG 57.377 34.615 0.00 0.00 34.56 3.18
5396 6199 4.562143 GCATGGATTATCCCAAATGCCTTC 60.562 45.833 18.67 0.00 37.44 3.46
5406 6209 4.837860 TCCCAAATGCCTTCATGTAAAAGT 59.162 37.500 0.00 0.00 32.23 2.66
5556 6520 6.747414 ATGGTGATAGCTAGTTTGGTATGA 57.253 37.500 0.00 0.00 31.71 2.15
5558 6522 4.991687 GGTGATAGCTAGTTTGGTATGAGC 59.008 45.833 0.00 0.00 31.71 4.26
5559 6523 5.453339 GGTGATAGCTAGTTTGGTATGAGCA 60.453 44.000 0.00 0.00 34.16 4.26
5597 6577 2.035449 GGTGGTTAACTTTTGTCAGGGC 59.965 50.000 5.42 0.00 0.00 5.19
5682 6721 5.968676 TGGGATAGCTAGTTTGGTATGTT 57.031 39.130 0.00 0.00 31.71 2.71
5747 6786 1.728971 CAATTCTGCTCCACTGTCGTC 59.271 52.381 0.00 0.00 0.00 4.20
5757 6796 0.433492 CACTGTCGTCGCCTTTTACG 59.567 55.000 0.00 0.00 40.40 3.18
5769 6808 4.158394 TCGCCTTTTACGTACTACTCCAAT 59.842 41.667 0.00 0.00 0.00 3.16
5800 6839 5.888724 TCACTCAAATCTGTTGGTGGTTTTA 59.111 36.000 0.00 0.00 0.00 1.52
5871 6932 2.353269 CTGTGTGAACGTTTTGCAGGTA 59.647 45.455 0.46 0.00 0.00 3.08
5886 6947 9.722056 GTTTTGCAGGTATTATTCACTCTTATG 57.278 33.333 0.00 0.00 0.00 1.90
5887 6948 9.461312 TTTTGCAGGTATTATTCACTCTTATGT 57.539 29.630 0.00 0.00 0.00 2.29
5888 6949 8.437360 TTGCAGGTATTATTCACTCTTATGTG 57.563 34.615 0.00 0.00 39.15 3.21
5889 6950 6.483307 TGCAGGTATTATTCACTCTTATGTGC 59.517 38.462 0.00 0.00 37.81 4.57
5890 6951 6.708054 GCAGGTATTATTCACTCTTATGTGCT 59.292 38.462 0.00 0.00 37.81 4.40
5891 6952 7.307632 GCAGGTATTATTCACTCTTATGTGCTG 60.308 40.741 0.00 0.00 37.81 4.41
5958 7035 0.035152 TGGCTGCGACCATTTCTCAT 60.035 50.000 0.00 0.00 33.75 2.90
5991 7068 7.869937 TCATTGTTGTGAAGAAAAACAGTTTCA 59.130 29.630 0.00 0.00 35.39 2.69
6111 7188 6.521162 TCTTTTGTTCAGCATGTCTACACTA 58.479 36.000 0.00 0.00 37.40 2.74
6118 7195 3.865164 CAGCATGTCTACACTATTTGCGA 59.135 43.478 0.00 0.00 33.99 5.10
6137 7214 2.088423 GATGGTGCCAAAATGGACGTA 58.912 47.619 0.00 0.00 40.96 3.57
6171 7248 5.769367 TCTACGATAATGTGTAGACATGGC 58.231 41.667 6.23 0.00 42.30 4.40
6236 7323 5.078411 TGTTTTGGTGTAAATGCAAGTGT 57.922 34.783 0.00 0.00 0.00 3.55
6237 7324 4.867047 TGTTTTGGTGTAAATGCAAGTGTG 59.133 37.500 0.00 0.00 0.00 3.82
6238 7325 4.991153 TTTGGTGTAAATGCAAGTGTGA 57.009 36.364 0.00 0.00 0.00 3.58
6239 7326 4.991153 TTGGTGTAAATGCAAGTGTGAA 57.009 36.364 0.00 0.00 0.00 3.18
6240 7327 5.528043 TTGGTGTAAATGCAAGTGTGAAT 57.472 34.783 0.00 0.00 0.00 2.57
6241 7328 5.119931 TGGTGTAAATGCAAGTGTGAATC 57.880 39.130 0.00 0.00 0.00 2.52
6242 7329 4.826733 TGGTGTAAATGCAAGTGTGAATCT 59.173 37.500 0.00 0.00 0.00 2.40
6243 7330 5.156355 GGTGTAAATGCAAGTGTGAATCTG 58.844 41.667 0.00 0.00 0.00 2.90
6244 7331 5.156355 GTGTAAATGCAAGTGTGAATCTGG 58.844 41.667 0.00 0.00 0.00 3.86
6245 7332 5.048782 GTGTAAATGCAAGTGTGAATCTGGA 60.049 40.000 0.00 0.00 0.00 3.86
6246 7333 4.778534 AAATGCAAGTGTGAATCTGGAG 57.221 40.909 0.00 0.00 0.00 3.86
6270 7357 2.266689 CCAATGCTGCCCTTTGCC 59.733 61.111 0.00 0.00 40.16 4.52
6346 7439 7.823665 TGATTGAAATTCTCCATATGCTATGC 58.176 34.615 0.00 0.00 0.00 3.14
6348 7441 5.884322 TGAAATTCTCCATATGCTATGCCT 58.116 37.500 0.00 0.00 0.00 4.75
6349 7442 7.019656 TGAAATTCTCCATATGCTATGCCTA 57.980 36.000 0.00 0.00 0.00 3.93
6350 7443 7.636579 TGAAATTCTCCATATGCTATGCCTAT 58.363 34.615 0.00 0.00 0.00 2.57
6351 7444 7.555195 TGAAATTCTCCATATGCTATGCCTATG 59.445 37.037 0.00 7.53 37.06 2.23
6352 7445 6.572182 ATTCTCCATATGCTATGCCTATGT 57.428 37.500 11.69 0.00 36.10 2.29
6353 7446 7.681259 ATTCTCCATATGCTATGCCTATGTA 57.319 36.000 11.69 0.00 36.10 2.29
6354 7447 6.471233 TCTCCATATGCTATGCCTATGTAC 57.529 41.667 11.69 0.00 36.10 2.90
6355 7448 5.363868 TCTCCATATGCTATGCCTATGTACC 59.636 44.000 11.69 0.00 36.10 3.34
6356 7449 5.280499 TCCATATGCTATGCCTATGTACCT 58.720 41.667 11.69 0.00 36.10 3.08
6357 7450 5.129320 TCCATATGCTATGCCTATGTACCTG 59.871 44.000 11.69 0.63 36.10 4.00
6358 7451 5.129320 CCATATGCTATGCCTATGTACCTGA 59.871 44.000 11.69 0.00 36.10 3.86
6359 7452 6.352137 CCATATGCTATGCCTATGTACCTGAA 60.352 42.308 11.69 0.00 36.10 3.02
6360 7453 4.607293 TGCTATGCCTATGTACCTGAAG 57.393 45.455 0.00 0.00 0.00 3.02
6361 7454 3.244215 TGCTATGCCTATGTACCTGAAGC 60.244 47.826 0.00 0.00 0.00 3.86
6362 7455 2.938956 ATGCCTATGTACCTGAAGCC 57.061 50.000 0.00 0.00 0.00 4.35
6363 7456 1.879575 TGCCTATGTACCTGAAGCCT 58.120 50.000 0.00 0.00 0.00 4.58
6364 7457 1.486310 TGCCTATGTACCTGAAGCCTG 59.514 52.381 0.00 0.00 0.00 4.85
6365 7458 1.202698 GCCTATGTACCTGAAGCCTGG 60.203 57.143 0.00 0.00 37.41 4.45
6366 7459 2.119495 CCTATGTACCTGAAGCCTGGT 58.881 52.381 0.00 0.00 45.16 4.00
6367 7460 2.103263 CCTATGTACCTGAAGCCTGGTC 59.897 54.545 0.00 0.00 42.66 4.02
6368 7461 0.912486 ATGTACCTGAAGCCTGGTCC 59.088 55.000 0.00 0.00 42.66 4.46
6369 7462 0.178903 TGTACCTGAAGCCTGGTCCT 60.179 55.000 0.00 0.00 42.66 3.85
6370 7463 0.984995 GTACCTGAAGCCTGGTCCTT 59.015 55.000 0.00 0.00 42.66 3.36
6371 7464 0.984230 TACCTGAAGCCTGGTCCTTG 59.016 55.000 0.00 0.00 42.66 3.61
6372 7465 1.676967 CCTGAAGCCTGGTCCTTGC 60.677 63.158 0.00 0.00 0.00 4.01
6373 7466 1.377994 CTGAAGCCTGGTCCTTGCT 59.622 57.895 0.00 0.38 36.79 3.91
6375 7468 0.538057 TGAAGCCTGGTCCTTGCTTG 60.538 55.000 19.20 0.00 44.83 4.01
6376 7469 0.250901 GAAGCCTGGTCCTTGCTTGA 60.251 55.000 19.20 0.00 44.83 3.02
6377 7470 0.407139 AAGCCTGGTCCTTGCTTGAT 59.593 50.000 15.09 0.00 43.30 2.57
6378 7471 0.407139 AGCCTGGTCCTTGCTTGATT 59.593 50.000 0.00 0.00 29.17 2.57
6379 7472 1.635487 AGCCTGGTCCTTGCTTGATTA 59.365 47.619 0.00 0.00 29.17 1.75
6380 7473 1.745653 GCCTGGTCCTTGCTTGATTAC 59.254 52.381 0.00 0.00 0.00 1.89
6381 7474 2.619074 GCCTGGTCCTTGCTTGATTACT 60.619 50.000 0.00 0.00 0.00 2.24
6382 7475 3.012518 CCTGGTCCTTGCTTGATTACTG 58.987 50.000 0.00 0.00 0.00 2.74
6383 7476 3.307691 CCTGGTCCTTGCTTGATTACTGA 60.308 47.826 0.00 0.00 0.00 3.41
6384 7477 3.937706 CTGGTCCTTGCTTGATTACTGAG 59.062 47.826 0.00 0.00 0.00 3.35
6409 7502 5.804449 TTGAAATGTTGAAATTTCGAGCG 57.196 34.783 13.34 0.00 45.55 5.03
6410 7503 4.854399 TGAAATGTTGAAATTTCGAGCGT 58.146 34.783 13.34 4.84 45.55 5.07
6421 7514 1.725641 TTCGAGCGTGAATGCAGATT 58.274 45.000 0.00 0.00 37.31 2.40
6471 7564 1.855295 ATGCATTGCCAGATCCAACA 58.145 45.000 6.12 0.00 0.00 3.33
6495 7588 8.257306 ACACAAGAACAAAATAACCTGACAAAT 58.743 29.630 0.00 0.00 0.00 2.32
6504 7597 9.206870 CAAAATAACCTGACAAATTAAGCATGT 57.793 29.630 0.00 0.00 0.00 3.21
6550 7657 6.799512 ACAATAAATGTTGATTAGAGGCTGC 58.200 36.000 0.00 0.00 40.06 5.25
6551 7658 6.604795 ACAATAAATGTTGATTAGAGGCTGCT 59.395 34.615 0.00 0.00 40.06 4.24
6554 7661 3.257469 TGTTGATTAGAGGCTGCTGAG 57.743 47.619 0.00 0.00 0.00 3.35
6556 7663 3.453717 TGTTGATTAGAGGCTGCTGAGAT 59.546 43.478 0.00 0.00 0.00 2.75
6557 7664 3.747854 TGATTAGAGGCTGCTGAGATG 57.252 47.619 0.00 0.00 0.00 2.90
6578 7685 3.820467 TGAGCAAACAGACCACCATAAAG 59.180 43.478 0.00 0.00 0.00 1.85
6641 7748 4.143094 GGTAATCTAGCGAAAATCGATGGC 60.143 45.833 0.00 0.46 43.74 4.40
6642 7749 1.865865 TCTAGCGAAAATCGATGGCC 58.134 50.000 0.00 0.00 43.74 5.36
6650 7797 2.623094 AAATCGATGGCCGGGCATGA 62.623 55.000 44.27 36.12 39.14 3.07
6654 7801 1.364901 GATGGCCGGGCATGATTTG 59.635 57.895 44.27 0.00 0.00 2.32
6656 7803 1.678598 ATGGCCGGGCATGATTTGTG 61.679 55.000 39.67 0.00 0.00 3.33
6681 7828 0.252696 ATCACCACCCTAGTGCCTCA 60.253 55.000 0.00 0.00 43.09 3.86
6709 7856 9.512435 CTCTCCAATTATGCAAAAAGTAATCAG 57.488 33.333 0.00 0.00 0.00 2.90
6710 7857 8.469200 TCTCCAATTATGCAAAAAGTAATCAGG 58.531 33.333 0.00 0.00 0.00 3.86
6732 7879 1.938577 CACCGCATCTGAATTCTCCTG 59.061 52.381 7.05 2.56 0.00 3.86
6734 7881 1.590932 CGCATCTGAATTCTCCTGGG 58.409 55.000 7.05 5.83 0.00 4.45
6739 7886 1.089920 CTGAATTCTCCTGGGCAACG 58.910 55.000 7.05 0.00 37.60 4.10
6769 7916 1.048724 CCTAGCGGACCCCATCTCAA 61.049 60.000 0.00 0.00 0.00 3.02
6787 7934 8.086522 CCATCTCAACATTGTCTTTCTTCAAAT 58.913 33.333 0.00 0.00 0.00 2.32
6788 7935 9.125906 CATCTCAACATTGTCTTTCTTCAAATC 57.874 33.333 0.00 0.00 0.00 2.17
6799 7946 7.989741 TGTCTTTCTTCAAATCTCACTTCTCTT 59.010 33.333 0.00 0.00 0.00 2.85
6804 7951 8.600449 TCTTCAAATCTCACTTCTCTTTCTTC 57.400 34.615 0.00 0.00 0.00 2.87
6837 7984 0.612174 CACCCGACTTCTCCCTCTCA 60.612 60.000 0.00 0.00 0.00 3.27
6848 8014 5.163045 ACTTCTCCCTCTCATTTTTCAACCT 60.163 40.000 0.00 0.00 0.00 3.50
6884 8050 2.664851 TTTGACACCTGCGAGGCG 60.665 61.111 2.50 0.00 39.63 5.52
6904 8070 0.591170 CCCACTTTAACACCACGCTG 59.409 55.000 0.00 0.00 0.00 5.18
6917 8083 3.197790 CGCTGGCATCCGAACCTG 61.198 66.667 1.97 0.00 0.00 4.00
6918 8084 2.825836 GCTGGCATCCGAACCTGG 60.826 66.667 0.00 0.00 0.00 4.45
6931 8097 1.903877 AACCTGGCTGGACGATGGAG 61.904 60.000 18.12 0.00 39.71 3.86
6940 8106 0.386113 GGACGATGGAGCACTAGGTC 59.614 60.000 0.00 0.00 41.49 3.85
6951 8117 4.208686 CTAGGTCTGGGGCGACGC 62.209 72.222 12.43 12.43 44.99 5.19
6965 8131 0.596600 CGACGCGTATTACATGCCCT 60.597 55.000 13.97 0.00 35.59 5.19
6970 8136 2.561569 GCGTATTACATGCCCTCAAGT 58.438 47.619 0.00 0.00 32.57 3.16
6973 8139 4.211374 GCGTATTACATGCCCTCAAGTAAG 59.789 45.833 0.00 0.00 39.01 2.34
6974 8140 4.750098 CGTATTACATGCCCTCAAGTAAGG 59.250 45.833 0.00 0.00 39.01 2.69
6982 8148 2.629336 CCTCAAGTAAGGGCATCTCC 57.371 55.000 0.00 0.00 32.35 3.71
6983 8149 1.839994 CCTCAAGTAAGGGCATCTCCA 59.160 52.381 0.00 0.00 36.21 3.86
6984 8150 2.239654 CCTCAAGTAAGGGCATCTCCAA 59.760 50.000 0.00 0.00 36.21 3.53
6985 8151 3.274288 CTCAAGTAAGGGCATCTCCAAC 58.726 50.000 0.00 0.00 36.21 3.77
6986 8152 2.642311 TCAAGTAAGGGCATCTCCAACA 59.358 45.455 0.00 0.00 36.21 3.33
6987 8153 3.012518 CAAGTAAGGGCATCTCCAACAG 58.987 50.000 0.00 0.00 36.21 3.16
6988 8154 2.269940 AGTAAGGGCATCTCCAACAGT 58.730 47.619 0.00 0.00 36.21 3.55
6989 8155 2.237392 AGTAAGGGCATCTCCAACAGTC 59.763 50.000 0.00 0.00 36.21 3.51
6990 8156 1.366319 AAGGGCATCTCCAACAGTCT 58.634 50.000 0.00 0.00 36.21 3.24
6991 8157 0.617413 AGGGCATCTCCAACAGTCTG 59.383 55.000 0.00 0.00 36.21 3.51
6992 8158 0.326264 GGGCATCTCCAACAGTCTGT 59.674 55.000 0.00 0.00 36.21 3.41
6993 8159 1.555075 GGGCATCTCCAACAGTCTGTA 59.445 52.381 5.77 0.00 36.21 2.74
6994 8160 2.171448 GGGCATCTCCAACAGTCTGTAT 59.829 50.000 5.77 0.00 36.21 2.29
6995 8161 3.201290 GGCATCTCCAACAGTCTGTATG 58.799 50.000 5.77 7.09 34.01 2.39
6996 8162 3.369892 GGCATCTCCAACAGTCTGTATGT 60.370 47.826 5.77 0.00 34.01 2.29
6997 8163 4.256920 GCATCTCCAACAGTCTGTATGTT 58.743 43.478 5.77 0.00 41.47 2.71
6998 8164 5.419542 GCATCTCCAACAGTCTGTATGTTA 58.580 41.667 5.77 0.00 38.80 2.41
6999 8165 5.521735 GCATCTCCAACAGTCTGTATGTTAG 59.478 44.000 5.77 7.03 38.80 2.34
7000 8166 5.073311 TCTCCAACAGTCTGTATGTTAGC 57.927 43.478 5.77 0.00 38.80 3.09
7001 8167 4.772624 TCTCCAACAGTCTGTATGTTAGCT 59.227 41.667 5.77 0.00 38.80 3.32
7002 8168 5.246203 TCTCCAACAGTCTGTATGTTAGCTT 59.754 40.000 5.77 0.00 38.80 3.74
7003 8169 5.237815 TCCAACAGTCTGTATGTTAGCTTG 58.762 41.667 5.77 0.00 38.80 4.01
7004 8170 4.997395 CCAACAGTCTGTATGTTAGCTTGT 59.003 41.667 5.77 0.00 38.80 3.16
7005 8171 5.470098 CCAACAGTCTGTATGTTAGCTTGTT 59.530 40.000 5.77 0.00 38.80 2.83
7006 8172 6.365839 CAACAGTCTGTATGTTAGCTTGTTG 58.634 40.000 5.77 0.00 38.80 3.33
7007 8173 4.997395 ACAGTCTGTATGTTAGCTTGTTGG 59.003 41.667 2.87 0.00 0.00 3.77
7008 8174 4.997395 CAGTCTGTATGTTAGCTTGTTGGT 59.003 41.667 0.00 0.00 0.00 3.67
7009 8175 6.163476 CAGTCTGTATGTTAGCTTGTTGGTA 58.837 40.000 0.00 0.00 0.00 3.25
7010 8176 6.649141 CAGTCTGTATGTTAGCTTGTTGGTAA 59.351 38.462 0.00 0.00 36.42 2.85
7011 8177 7.172532 CAGTCTGTATGTTAGCTTGTTGGTAAA 59.827 37.037 0.00 0.00 39.88 2.01
7012 8178 7.717875 AGTCTGTATGTTAGCTTGTTGGTAAAA 59.282 33.333 0.00 0.00 39.88 1.52
7013 8179 8.512138 GTCTGTATGTTAGCTTGTTGGTAAAAT 58.488 33.333 0.00 0.00 39.88 1.82
7014 8180 9.727859 TCTGTATGTTAGCTTGTTGGTAAAATA 57.272 29.630 0.00 0.00 39.88 1.40
7019 8185 8.397575 TGTTAGCTTGTTGGTAAAATATGTCA 57.602 30.769 0.00 0.00 39.88 3.58
7020 8186 9.019656 TGTTAGCTTGTTGGTAAAATATGTCAT 57.980 29.630 0.00 0.00 39.88 3.06
7021 8187 9.289303 GTTAGCTTGTTGGTAAAATATGTCATG 57.711 33.333 0.00 0.00 39.88 3.07
7022 8188 7.466746 AGCTTGTTGGTAAAATATGTCATGT 57.533 32.000 0.00 0.00 0.00 3.21
7023 8189 7.538575 AGCTTGTTGGTAAAATATGTCATGTC 58.461 34.615 0.00 0.00 0.00 3.06
7024 8190 7.176515 AGCTTGTTGGTAAAATATGTCATGTCA 59.823 33.333 0.00 0.00 0.00 3.58
7025 8191 7.975616 GCTTGTTGGTAAAATATGTCATGTCAT 59.024 33.333 10.31 10.31 0.00 3.06
7026 8192 9.507280 CTTGTTGGTAAAATATGTCATGTCATC 57.493 33.333 8.77 0.00 0.00 2.92
7027 8193 8.572855 TGTTGGTAAAATATGTCATGTCATCA 57.427 30.769 8.77 0.00 0.00 3.07
7028 8194 9.018582 TGTTGGTAAAATATGTCATGTCATCAA 57.981 29.630 8.77 3.35 0.00 2.57
7029 8195 9.289303 GTTGGTAAAATATGTCATGTCATCAAC 57.711 33.333 8.77 10.90 0.00 3.18
7030 8196 7.995289 TGGTAAAATATGTCATGTCATCAACC 58.005 34.615 8.77 10.53 0.00 3.77
7031 8197 7.613411 TGGTAAAATATGTCATGTCATCAACCA 59.387 33.333 8.77 12.52 0.00 3.67
7032 8198 8.131100 GGTAAAATATGTCATGTCATCAACCAG 58.869 37.037 8.77 0.00 0.00 4.00
7033 8199 5.762825 AATATGTCATGTCATCAACCAGC 57.237 39.130 8.77 0.00 0.00 4.85
7034 8200 2.565046 TGTCATGTCATCAACCAGCA 57.435 45.000 0.00 0.00 0.00 4.41
7035 8201 2.153645 TGTCATGTCATCAACCAGCAC 58.846 47.619 0.00 0.00 0.00 4.40
7036 8202 1.470098 GTCATGTCATCAACCAGCACC 59.530 52.381 0.00 0.00 0.00 5.01
7037 8203 1.352017 TCATGTCATCAACCAGCACCT 59.648 47.619 0.00 0.00 0.00 4.00
7038 8204 2.165167 CATGTCATCAACCAGCACCTT 58.835 47.619 0.00 0.00 0.00 3.50
7039 8205 1.608055 TGTCATCAACCAGCACCTTG 58.392 50.000 0.00 0.00 0.00 3.61
7040 8206 1.142667 TGTCATCAACCAGCACCTTGA 59.857 47.619 0.00 0.00 0.00 3.02
7041 8207 1.537202 GTCATCAACCAGCACCTTGAC 59.463 52.381 0.00 0.00 0.00 3.18
7042 8208 1.142667 TCATCAACCAGCACCTTGACA 59.857 47.619 0.00 0.00 0.00 3.58
7043 8209 2.165167 CATCAACCAGCACCTTGACAT 58.835 47.619 0.00 0.00 0.00 3.06
7044 8210 3.008923 TCATCAACCAGCACCTTGACATA 59.991 43.478 0.00 0.00 0.00 2.29
7045 8211 3.500448 TCAACCAGCACCTTGACATAA 57.500 42.857 0.00 0.00 0.00 1.90
7046 8212 3.826524 TCAACCAGCACCTTGACATAAA 58.173 40.909 0.00 0.00 0.00 1.40
7047 8213 4.211125 TCAACCAGCACCTTGACATAAAA 58.789 39.130 0.00 0.00 0.00 1.52
7048 8214 4.037446 TCAACCAGCACCTTGACATAAAAC 59.963 41.667 0.00 0.00 0.00 2.43
7049 8215 3.561143 ACCAGCACCTTGACATAAAACA 58.439 40.909 0.00 0.00 0.00 2.83
7050 8216 3.957497 ACCAGCACCTTGACATAAAACAA 59.043 39.130 0.00 0.00 0.00 2.83
7051 8217 4.202111 ACCAGCACCTTGACATAAAACAAC 60.202 41.667 0.00 0.00 0.00 3.32
7052 8218 4.037923 CCAGCACCTTGACATAAAACAACT 59.962 41.667 0.00 0.00 0.00 3.16
7053 8219 5.451798 CCAGCACCTTGACATAAAACAACTT 60.452 40.000 0.00 0.00 0.00 2.66
7054 8220 5.687285 CAGCACCTTGACATAAAACAACTTC 59.313 40.000 0.00 0.00 0.00 3.01
7055 8221 5.359576 AGCACCTTGACATAAAACAACTTCA 59.640 36.000 0.00 0.00 0.00 3.02
7056 8222 6.039616 GCACCTTGACATAAAACAACTTCAA 58.960 36.000 0.00 0.00 0.00 2.69
7057 8223 6.701400 GCACCTTGACATAAAACAACTTCAAT 59.299 34.615 0.00 0.00 0.00 2.57
7058 8224 7.306749 GCACCTTGACATAAAACAACTTCAATG 60.307 37.037 0.00 0.00 0.00 2.82
7059 8225 7.169645 CACCTTGACATAAAACAACTTCAATGG 59.830 37.037 0.00 0.00 0.00 3.16
7060 8226 6.646240 CCTTGACATAAAACAACTTCAATGGG 59.354 38.462 0.00 0.00 0.00 4.00
7061 8227 6.723298 TGACATAAAACAACTTCAATGGGT 57.277 33.333 0.00 0.00 0.00 4.51
7062 8228 7.118496 TGACATAAAACAACTTCAATGGGTT 57.882 32.000 0.00 0.00 0.00 4.11
7063 8229 6.983307 TGACATAAAACAACTTCAATGGGTTG 59.017 34.615 14.56 14.56 45.55 3.77
7072 8238 7.687941 CAACTTCAATGGGTTGTATCTAGTT 57.312 36.000 10.20 0.00 38.27 2.24
7073 8239 8.110860 CAACTTCAATGGGTTGTATCTAGTTT 57.889 34.615 10.20 0.00 38.27 2.66
7074 8240 7.687941 ACTTCAATGGGTTGTATCTAGTTTG 57.312 36.000 0.00 0.00 36.69 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.063156 TGCCTTGCATTAAAACGCTG 57.937 45.000 0.00 0.00 31.71 5.18
111 112 9.159470 CATAGTTTTCGAGTTCTTTTGTTTCTC 57.841 33.333 0.00 0.00 0.00 2.87
116 117 6.619801 AGCATAGTTTTCGAGTTCTTTTGT 57.380 33.333 0.00 0.00 0.00 2.83
117 118 9.445786 TTTAAGCATAGTTTTCGAGTTCTTTTG 57.554 29.630 0.00 0.00 0.00 2.44
145 146 8.727910 GGTCAAATAGACTAACCGAGAATTTTT 58.272 33.333 0.00 0.00 46.72 1.94
150 151 4.773674 TGGGTCAAATAGACTAACCGAGAA 59.226 41.667 0.00 0.00 46.72 2.87
171 172 1.010419 GCGTTTGCCATTGCTCTTGG 61.010 55.000 0.00 0.00 38.71 3.61
173 174 0.038892 CAGCGTTTGCCATTGCTCTT 60.039 50.000 0.00 0.00 44.31 2.85
236 237 1.293498 CTCGGATCTAATGGGGGCG 59.707 63.158 0.00 0.00 0.00 6.13
275 276 5.406649 GCTCATATTCATCCTCTTAGACGG 58.593 45.833 0.00 0.00 0.00 4.79
328 333 6.043854 AGAGAAAACACTAGGGTTCTGATC 57.956 41.667 11.63 7.70 30.56 2.92
330 335 4.022242 CGAGAGAAAACACTAGGGTTCTGA 60.022 45.833 11.63 0.00 30.56 3.27
335 340 2.885616 TCCGAGAGAAAACACTAGGGT 58.114 47.619 0.00 0.00 31.52 4.34
337 342 3.190874 GCATCCGAGAGAAAACACTAGG 58.809 50.000 0.00 0.00 0.00 3.02
338 343 3.190874 GGCATCCGAGAGAAAACACTAG 58.809 50.000 0.00 0.00 0.00 2.57
339 344 2.565391 TGGCATCCGAGAGAAAACACTA 59.435 45.455 0.00 0.00 0.00 2.74
367 377 4.101448 GTCATCCGTGCCAGCCCT 62.101 66.667 0.00 0.00 0.00 5.19
372 382 3.690280 TCTGCGTCATCCGTGCCA 61.690 61.111 0.00 0.00 39.32 4.92
384 394 1.941975 TGCCATGTTGATATGTCTGCG 59.058 47.619 0.00 0.00 0.00 5.18
465 476 7.621796 TGGATTAGAATCATCAGATCAGATGG 58.378 38.462 23.33 9.01 44.30 3.51
466 477 9.320352 GATGGATTAGAATCATCAGATCAGATG 57.680 37.037 19.24 19.24 45.28 2.90
486 500 4.771114 TTTGTCGTGGGATTAGATGGAT 57.229 40.909 0.00 0.00 0.00 3.41
487 501 4.561500 TTTTGTCGTGGGATTAGATGGA 57.438 40.909 0.00 0.00 0.00 3.41
488 502 4.700213 AGTTTTTGTCGTGGGATTAGATGG 59.300 41.667 0.00 0.00 0.00 3.51
489 503 5.411361 TGAGTTTTTGTCGTGGGATTAGATG 59.589 40.000 0.00 0.00 0.00 2.90
502 516 3.786048 CGTGTTGCTTCTGAGTTTTTGTC 59.214 43.478 0.00 0.00 0.00 3.18
628 686 2.527951 CTTTCCTCCCAGCCGGACAG 62.528 65.000 5.05 0.00 34.86 3.51
629 687 2.528127 TTTCCTCCCAGCCGGACA 60.528 61.111 5.05 0.00 34.86 4.02
630 688 2.269241 CTTTCCTCCCAGCCGGAC 59.731 66.667 5.05 0.00 34.86 4.79
635 693 2.330924 ATAGCCGCTTTCCTCCCAGC 62.331 60.000 0.00 0.00 0.00 4.85
636 694 1.048601 TATAGCCGCTTTCCTCCCAG 58.951 55.000 0.00 0.00 0.00 4.45
684 756 6.921307 CCATATTAAGGTTTATTTCCGTTGCC 59.079 38.462 0.00 0.00 0.00 4.52
728 807 2.280308 TACCTCCCAGCCCAGTTAAT 57.720 50.000 0.00 0.00 0.00 1.40
729 808 1.913419 CTTACCTCCCAGCCCAGTTAA 59.087 52.381 0.00 0.00 0.00 2.01
744 823 0.533085 GGCGATGGGCTTCTCTTACC 60.533 60.000 0.00 0.00 42.94 2.85
796 875 2.542595 AGATTTCACTCGCGTCGTTTTT 59.457 40.909 5.77 0.00 0.00 1.94
1503 1621 8.651588 CAGTATCTATAATCGGCAAGAACAATC 58.348 37.037 0.00 0.00 0.00 2.67
1606 1725 5.655394 AGCTAGATAATAGGGTCATGTCCA 58.345 41.667 11.23 0.00 0.00 4.02
1626 1745 3.077359 GTGCAGTCAATTTGGAGTAGCT 58.923 45.455 0.00 0.00 0.00 3.32
1630 1749 2.936202 ACAGTGCAGTCAATTTGGAGT 58.064 42.857 0.00 0.00 0.00 3.85
1641 1760 0.033601 TCACCCCAAAACAGTGCAGT 60.034 50.000 0.00 0.00 0.00 4.40
1707 1833 7.116948 CCAGTCCATCAGAAACGATCATATAAC 59.883 40.741 0.00 0.00 0.00 1.89
1715 1841 3.338249 CAACCAGTCCATCAGAAACGAT 58.662 45.455 0.00 0.00 0.00 3.73
1868 1996 5.390613 CACATCGTTGAAGGTATTGTTTCC 58.609 41.667 0.00 0.00 0.00 3.13
1908 2039 4.621068 TCTTTGATCATTTGGATGACGC 57.379 40.909 0.00 0.00 44.64 5.19
1987 2118 0.881118 AAAACTGCACTATGGCCACG 59.119 50.000 8.16 4.61 0.00 4.94
1992 2123 8.424274 AAAAGAAAAGAAAAACTGCACTATGG 57.576 30.769 0.00 0.00 0.00 2.74
2282 2414 5.752892 AGATGTGTCATCATCATTTCTGC 57.247 39.130 11.47 0.00 44.46 4.26
2346 2478 0.914417 CCCCCTGGGCAAGAGAACTA 60.914 60.000 7.39 0.00 35.35 2.24
2560 2692 2.443255 TCAACAAAGCTCCTTTCCCTCT 59.557 45.455 0.00 0.00 30.60 3.69
2561 2693 2.863809 TCAACAAAGCTCCTTTCCCTC 58.136 47.619 0.00 0.00 30.60 4.30
2661 2793 5.882557 GCTTTCTTCCTCATCAATTAGGTCA 59.117 40.000 0.00 0.00 34.30 4.02
2973 3165 6.325028 TCTTCTTTGTTCCTGAAGAGAGAGAA 59.675 38.462 0.00 0.00 40.54 2.87
3146 3344 0.694771 ATCTTGAGCCTCAACTGCCA 59.305 50.000 2.24 0.00 32.21 4.92
3182 3380 1.338020 CAACTCCACCTTTGCTTCCAC 59.662 52.381 0.00 0.00 0.00 4.02
3288 3486 4.006319 AGATTTGACTTACTTGAGCAGCC 58.994 43.478 0.00 0.00 0.00 4.85
3439 3643 7.009999 CGTCTCTCATCTGAATGAAAGTAAAGG 59.990 40.741 0.00 0.00 41.33 3.11
3536 3740 5.163034 TGGAGGTTTAACATCTTCCTTTCCA 60.163 40.000 9.59 0.00 0.00 3.53
3680 3884 9.277783 CTAGAAAGAACTATGTGGGATTTATGG 57.722 37.037 0.00 0.00 0.00 2.74
3744 3948 3.253677 GCTAGCGACACCATACTGAGTAT 59.746 47.826 0.00 0.00 0.00 2.12
3745 3949 2.617308 GCTAGCGACACCATACTGAGTA 59.383 50.000 0.00 0.00 0.00 2.59
3746 3950 1.405821 GCTAGCGACACCATACTGAGT 59.594 52.381 0.00 0.00 0.00 3.41
3747 3951 1.598183 CGCTAGCGACACCATACTGAG 60.598 57.143 32.98 0.00 42.83 3.35
3748 3952 0.380733 CGCTAGCGACACCATACTGA 59.619 55.000 32.98 0.00 42.83 3.41
3749 3953 0.100682 ACGCTAGCGACACCATACTG 59.899 55.000 41.33 10.18 42.83 2.74
3750 3954 1.671979 TACGCTAGCGACACCATACT 58.328 50.000 41.33 19.26 42.83 2.12
3751 3955 2.480224 TTACGCTAGCGACACCATAC 57.520 50.000 41.33 0.00 42.83 2.39
3752 3956 2.882761 AGATTACGCTAGCGACACCATA 59.117 45.455 41.33 20.40 42.83 2.74
3753 3957 1.681793 AGATTACGCTAGCGACACCAT 59.318 47.619 41.33 23.54 42.83 3.55
3754 3958 1.065102 GAGATTACGCTAGCGACACCA 59.935 52.381 41.33 20.18 42.83 4.17
3755 3959 1.599916 GGAGATTACGCTAGCGACACC 60.600 57.143 41.33 28.02 42.83 4.16
3802 4314 4.369182 ACGACTCTAGGAAACACAACAAG 58.631 43.478 0.00 0.00 0.00 3.16
4117 4629 6.992063 ATTAACTGGCTCTAAACTGACATG 57.008 37.500 0.00 0.00 0.00 3.21
4129 4641 5.646360 TGTAGGTTAGCAAATTAACTGGCTC 59.354 40.000 0.00 0.00 37.79 4.70
4140 4652 7.377398 TGTTATAAGACGTGTAGGTTAGCAAA 58.623 34.615 0.00 0.00 0.00 3.68
4284 4816 6.375455 GGATAGGCATAATGGTTCATAACAGG 59.625 42.308 0.00 0.00 0.00 4.00
4382 4914 4.431809 TCCATGCCATTATTCGCAAAAAG 58.568 39.130 0.00 0.00 38.75 2.27
4402 4934 3.181457 GGGTGTTACAGTTAGGCCTATCC 60.181 52.174 14.74 7.60 0.00 2.59
4501 5033 7.505585 TCTGGTCTCCAAAATTTATGACAAACT 59.494 33.333 0.00 0.00 30.80 2.66
4503 5035 7.505585 AGTCTGGTCTCCAAAATTTATGACAAA 59.494 33.333 0.00 0.00 30.80 2.83
4505 5037 6.542821 AGTCTGGTCTCCAAAATTTATGACA 58.457 36.000 0.00 0.00 30.80 3.58
4506 5038 8.561738 TTAGTCTGGTCTCCAAAATTTATGAC 57.438 34.615 0.00 0.00 30.80 3.06
4570 5358 5.416952 AGAAAACATCTAATGGGCTGAACAG 59.583 40.000 0.00 0.00 36.32 3.16
4618 5406 5.391629 CCTGGTTTGTAAAATAAGAGACGGC 60.392 44.000 0.00 0.00 0.00 5.68
4621 5409 8.161699 TCAACCTGGTTTGTAAAATAAGAGAC 57.838 34.615 9.90 0.00 0.00 3.36
4747 5549 8.596781 AGAGCTAAGAAATAGAACAGGAAGTA 57.403 34.615 0.00 0.00 33.04 2.24
4913 5715 2.039613 GCCCTGGGGAATTCAGAGATAG 59.960 54.545 16.03 0.00 37.50 2.08
5036 5838 7.573710 TGTATATAACTTGGCATTGACCTTCT 58.426 34.615 0.00 0.00 0.00 2.85
5373 6176 2.901839 AGGCATTTGGGATAATCCATGC 59.098 45.455 9.52 9.52 40.64 4.06
5522 6325 7.675062 ACTAGCTATCACCATTTCTAATCAGG 58.325 38.462 0.00 0.00 0.00 3.86
5556 6520 1.072159 GCTGTGAACTCCACCTGCT 59.928 57.895 0.00 0.00 45.09 4.24
5558 6522 0.604780 CCTGCTGTGAACTCCACCTG 60.605 60.000 0.00 0.00 45.09 4.00
5559 6523 1.056700 ACCTGCTGTGAACTCCACCT 61.057 55.000 0.00 0.00 45.09 4.00
5644 6625 2.032620 TCCCAACCTCTAATCGAGCTC 58.967 52.381 2.73 2.73 38.49 4.09
5645 6626 2.160721 TCCCAACCTCTAATCGAGCT 57.839 50.000 0.00 0.00 38.49 4.09
5682 6721 5.398169 CACTGTCAGTTTTGCTTGTAAACA 58.602 37.500 1.67 0.00 37.83 2.83
5747 6786 3.492421 TGGAGTAGTACGTAAAAGGCG 57.508 47.619 0.00 0.00 0.00 5.52
5757 6796 7.548097 TGAGTGAAATCAGATTGGAGTAGTAC 58.452 38.462 0.00 0.00 0.00 2.73
5886 6947 8.703604 TCAACTAGAAATGAATACTACAGCAC 57.296 34.615 0.00 0.00 0.00 4.40
5887 6948 9.890629 AATCAACTAGAAATGAATACTACAGCA 57.109 29.630 0.00 0.00 0.00 4.41
5958 7035 5.771153 TTCTTCACAACAATGAATCAGCA 57.229 34.783 0.00 0.00 37.93 4.41
6111 7188 2.348660 CATTTTGGCACCATCGCAAAT 58.651 42.857 0.00 0.00 0.00 2.32
6118 7195 2.208132 TACGTCCATTTTGGCACCAT 57.792 45.000 0.00 0.00 37.47 3.55
6171 7248 4.616835 GCCAGCTTAAAAGATGTCCTTGTG 60.617 45.833 7.16 0.00 40.66 3.33
6236 7323 1.639722 TGGTCGGTTCTCCAGATTCA 58.360 50.000 0.00 0.00 0.00 2.57
6237 7324 2.762535 TTGGTCGGTTCTCCAGATTC 57.237 50.000 0.00 0.00 35.05 2.52
6238 7325 2.941415 GCATTGGTCGGTTCTCCAGATT 60.941 50.000 0.00 0.00 35.05 2.40
6239 7326 1.407437 GCATTGGTCGGTTCTCCAGAT 60.407 52.381 0.00 0.00 35.05 2.90
6240 7327 0.036388 GCATTGGTCGGTTCTCCAGA 60.036 55.000 0.00 0.00 35.05 3.86
6241 7328 0.036010 AGCATTGGTCGGTTCTCCAG 60.036 55.000 0.00 0.00 35.05 3.86
6242 7329 0.321564 CAGCATTGGTCGGTTCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
6243 7330 1.648467 GCAGCATTGGTCGGTTCTCC 61.648 60.000 0.00 0.00 0.00 3.71
6244 7331 1.648467 GGCAGCATTGGTCGGTTCTC 61.648 60.000 0.00 0.00 0.00 2.87
6245 7332 1.675641 GGCAGCATTGGTCGGTTCT 60.676 57.895 0.00 0.00 0.00 3.01
6246 7333 2.700773 GGGCAGCATTGGTCGGTTC 61.701 63.158 0.00 0.00 0.00 3.62
6278 7365 7.282450 CCAAACACAGTTTAACCTCTAAGTCTT 59.718 37.037 0.00 0.00 0.00 3.01
6280 7367 6.541278 ACCAAACACAGTTTAACCTCTAAGTC 59.459 38.462 0.00 0.00 0.00 3.01
6282 7369 6.937436 ACCAAACACAGTTTAACCTCTAAG 57.063 37.500 0.00 0.00 0.00 2.18
6286 7373 5.449999 CCAGAACCAAACACAGTTTAACCTC 60.450 44.000 0.00 0.00 0.00 3.85
6288 7375 4.158949 ACCAGAACCAAACACAGTTTAACC 59.841 41.667 0.00 0.00 0.00 2.85
6346 7439 2.103263 GACCAGGCTTCAGGTACATAGG 59.897 54.545 0.00 0.00 38.50 2.57
6348 7441 2.116238 GGACCAGGCTTCAGGTACATA 58.884 52.381 0.00 0.00 38.67 2.29
6349 7442 0.912486 GGACCAGGCTTCAGGTACAT 59.088 55.000 0.00 0.00 38.67 2.29
6350 7443 0.178903 AGGACCAGGCTTCAGGTACA 60.179 55.000 7.41 0.00 41.43 2.90
6351 7444 0.984995 AAGGACCAGGCTTCAGGTAC 59.015 55.000 0.00 0.00 38.50 3.34
6352 7445 0.984230 CAAGGACCAGGCTTCAGGTA 59.016 55.000 0.00 0.00 38.50 3.08
6353 7446 1.763770 CAAGGACCAGGCTTCAGGT 59.236 57.895 0.00 0.00 41.83 4.00
6354 7447 1.676967 GCAAGGACCAGGCTTCAGG 60.677 63.158 0.00 0.00 0.00 3.86
6355 7448 0.251077 AAGCAAGGACCAGGCTTCAG 60.251 55.000 14.82 0.00 43.97 3.02
6356 7449 0.538057 CAAGCAAGGACCAGGCTTCA 60.538 55.000 17.01 0.00 45.42 3.02
6357 7450 0.250901 TCAAGCAAGGACCAGGCTTC 60.251 55.000 17.01 0.00 45.42 3.86
6359 7452 0.407139 AATCAAGCAAGGACCAGGCT 59.593 50.000 4.21 4.21 40.14 4.58
6360 7453 1.745653 GTAATCAAGCAAGGACCAGGC 59.254 52.381 0.00 0.00 0.00 4.85
6361 7454 3.012518 CAGTAATCAAGCAAGGACCAGG 58.987 50.000 0.00 0.00 0.00 4.45
6362 7455 3.937706 CTCAGTAATCAAGCAAGGACCAG 59.062 47.826 0.00 0.00 0.00 4.00
6363 7456 3.327757 ACTCAGTAATCAAGCAAGGACCA 59.672 43.478 0.00 0.00 0.00 4.02
6364 7457 3.935828 GACTCAGTAATCAAGCAAGGACC 59.064 47.826 0.00 0.00 0.00 4.46
6365 7458 4.826556 AGACTCAGTAATCAAGCAAGGAC 58.173 43.478 0.00 0.00 0.00 3.85
6366 7459 5.012046 TCAAGACTCAGTAATCAAGCAAGGA 59.988 40.000 0.00 0.00 0.00 3.36
6367 7460 5.240891 TCAAGACTCAGTAATCAAGCAAGG 58.759 41.667 0.00 0.00 0.00 3.61
6368 7461 6.791887 TTCAAGACTCAGTAATCAAGCAAG 57.208 37.500 0.00 0.00 0.00 4.01
6369 7462 7.229306 ACATTTCAAGACTCAGTAATCAAGCAA 59.771 33.333 0.00 0.00 0.00 3.91
6370 7463 6.712095 ACATTTCAAGACTCAGTAATCAAGCA 59.288 34.615 0.00 0.00 0.00 3.91
6371 7464 7.138692 ACATTTCAAGACTCAGTAATCAAGC 57.861 36.000 0.00 0.00 0.00 4.01
6372 7465 8.777413 TCAACATTTCAAGACTCAGTAATCAAG 58.223 33.333 0.00 0.00 0.00 3.02
6373 7466 8.675705 TCAACATTTCAAGACTCAGTAATCAA 57.324 30.769 0.00 0.00 0.00 2.57
6374 7467 8.675705 TTCAACATTTCAAGACTCAGTAATCA 57.324 30.769 0.00 0.00 0.00 2.57
6378 7471 9.950680 GAAATTTCAACATTTCAAGACTCAGTA 57.049 29.630 13.40 0.00 41.19 2.74
6379 7472 7.645340 CGAAATTTCAACATTTCAAGACTCAGT 59.355 33.333 17.99 0.00 41.48 3.41
6380 7473 7.857389 TCGAAATTTCAACATTTCAAGACTCAG 59.143 33.333 17.99 0.00 41.48 3.35
6381 7474 7.702386 TCGAAATTTCAACATTTCAAGACTCA 58.298 30.769 17.99 0.00 41.48 3.41
6382 7475 7.149063 GCTCGAAATTTCAACATTTCAAGACTC 60.149 37.037 17.99 0.00 41.48 3.36
6383 7476 6.638468 GCTCGAAATTTCAACATTTCAAGACT 59.362 34.615 17.99 0.00 41.48 3.24
6384 7477 6.397894 CGCTCGAAATTTCAACATTTCAAGAC 60.398 38.462 17.99 0.00 41.48 3.01
6407 7500 4.913376 ACAAATAGAATCTGCATTCACGC 58.087 39.130 3.04 0.00 41.03 5.34
6409 7502 6.467047 CGTGAACAAATAGAATCTGCATTCAC 59.533 38.462 10.05 10.05 41.03 3.18
6410 7503 6.403527 CCGTGAACAAATAGAATCTGCATTCA 60.404 38.462 3.04 0.00 41.03 2.57
6421 7514 4.390603 CGGTGAAATCCGTGAACAAATAGA 59.609 41.667 0.00 0.00 44.77 1.98
6444 7537 4.082354 GGATCTGGCAATGCATAAGATTCC 60.082 45.833 7.79 11.06 29.44 3.01
6447 7540 4.108501 TGGATCTGGCAATGCATAAGAT 57.891 40.909 14.39 14.39 31.05 2.40
6452 7545 1.479323 GTGTTGGATCTGGCAATGCAT 59.521 47.619 7.79 0.00 0.00 3.96
6523 7630 9.643693 CAGCCTCTAATCAACATTTATTGTTTT 57.356 29.630 0.00 0.00 46.51 2.43
6540 7647 1.411977 GCTCATCTCAGCAGCCTCTAA 59.588 52.381 0.00 0.00 39.43 2.10
6544 7651 3.723245 TGCTCATCTCAGCAGCCT 58.277 55.556 0.00 0.00 44.73 4.58
6549 7656 1.736681 GGTCTGTTTGCTCATCTCAGC 59.263 52.381 0.00 0.00 40.13 4.26
6550 7657 2.740981 GTGGTCTGTTTGCTCATCTCAG 59.259 50.000 0.00 0.00 0.00 3.35
6551 7658 2.550855 GGTGGTCTGTTTGCTCATCTCA 60.551 50.000 0.00 0.00 0.00 3.27
6554 7661 1.896220 TGGTGGTCTGTTTGCTCATC 58.104 50.000 0.00 0.00 0.00 2.92
6556 7663 3.500448 TTATGGTGGTCTGTTTGCTCA 57.500 42.857 0.00 0.00 0.00 4.26
6557 7664 3.191371 CCTTTATGGTGGTCTGTTTGCTC 59.809 47.826 0.00 0.00 0.00 4.26
6578 7685 0.742505 CATCACACCACATGCCATCC 59.257 55.000 0.00 0.00 0.00 3.51
6583 7690 2.488937 TGAATGTCATCACACCACATGC 59.511 45.455 0.00 0.00 34.48 4.06
6587 7694 1.470098 GCCTGAATGTCATCACACCAC 59.530 52.381 0.00 0.00 34.48 4.16
6641 7748 1.386525 CCTCCACAAATCATGCCCGG 61.387 60.000 0.00 0.00 0.00 5.73
6642 7749 2.008268 GCCTCCACAAATCATGCCCG 62.008 60.000 0.00 0.00 0.00 6.13
6681 7828 5.990120 ACTTTTTGCATAATTGGAGAGCT 57.010 34.783 0.00 0.00 0.00 4.09
6709 7856 0.749454 AGAATTCAGATGCGGTGGCC 60.749 55.000 8.44 0.00 38.85 5.36
6710 7857 0.659957 GAGAATTCAGATGCGGTGGC 59.340 55.000 8.44 0.00 40.52 5.01
6749 7896 2.122813 AGATGGGGTCCGCTAGGG 60.123 66.667 7.55 0.00 38.33 3.53
6769 7916 7.814264 AGTGAGATTTGAAGAAAGACAATGT 57.186 32.000 0.00 0.00 0.00 2.71
6787 7934 7.256012 GGAAAGGTAGAAGAAAGAGAAGTGAGA 60.256 40.741 0.00 0.00 0.00 3.27
6788 7935 6.871492 GGAAAGGTAGAAGAAAGAGAAGTGAG 59.129 42.308 0.00 0.00 0.00 3.51
6799 7946 2.910977 GTGGAGGGGAAAGGTAGAAGAA 59.089 50.000 0.00 0.00 0.00 2.52
6804 7951 1.623542 CGGGTGGAGGGGAAAGGTAG 61.624 65.000 0.00 0.00 0.00 3.18
6837 7984 4.889409 TCTGCAAGAGACAGGTTGAAAAAT 59.111 37.500 0.00 0.00 38.67 1.82
6884 8050 1.170290 AGCGTGGTGTTAAAGTGGGC 61.170 55.000 0.00 0.00 0.00 5.36
6904 8070 2.825836 CAGCCAGGTTCGGATGCC 60.826 66.667 0.00 0.00 35.29 4.40
6917 8083 1.676678 TAGTGCTCCATCGTCCAGCC 61.677 60.000 0.00 0.00 31.68 4.85
6918 8084 0.249238 CTAGTGCTCCATCGTCCAGC 60.249 60.000 0.00 0.00 0.00 4.85
6931 8097 3.075005 TCGCCCCAGACCTAGTGC 61.075 66.667 0.00 0.00 0.00 4.40
6940 8106 1.947642 GTAATACGCGTCGCCCCAG 60.948 63.158 18.63 0.00 0.00 4.45
6951 8117 4.750098 CCTTACTTGAGGGCATGTAATACG 59.250 45.833 0.00 0.00 41.16 3.06
6965 8131 2.642311 TGTTGGAGATGCCCTTACTTGA 59.358 45.455 0.00 0.00 34.97 3.02
6970 8136 2.237143 CAGACTGTTGGAGATGCCCTTA 59.763 50.000 0.00 0.00 34.97 2.69
6973 8139 0.326264 ACAGACTGTTGGAGATGCCC 59.674 55.000 1.07 0.00 34.97 5.36
6974 8140 3.201290 CATACAGACTGTTGGAGATGCC 58.799 50.000 14.50 0.00 37.10 4.40
6975 8141 3.866651 ACATACAGACTGTTGGAGATGC 58.133 45.455 14.50 0.00 0.00 3.91
6976 8142 5.521735 GCTAACATACAGACTGTTGGAGATG 59.478 44.000 14.50 12.94 37.29 2.90
6977 8143 5.423610 AGCTAACATACAGACTGTTGGAGAT 59.576 40.000 14.50 9.34 37.29 2.75
6978 8144 4.772624 AGCTAACATACAGACTGTTGGAGA 59.227 41.667 14.50 0.00 37.29 3.71
6979 8145 5.078411 AGCTAACATACAGACTGTTGGAG 57.922 43.478 14.50 13.09 37.29 3.86
6980 8146 5.221641 ACAAGCTAACATACAGACTGTTGGA 60.222 40.000 14.50 0.00 37.29 3.53
6981 8147 4.997395 ACAAGCTAACATACAGACTGTTGG 59.003 41.667 14.50 8.91 37.41 3.77
6982 8148 6.365839 CAACAAGCTAACATACAGACTGTTG 58.634 40.000 14.50 13.60 37.41 3.33
6983 8149 5.470098 CCAACAAGCTAACATACAGACTGTT 59.530 40.000 14.50 0.00 39.93 3.16
6984 8150 4.997395 CCAACAAGCTAACATACAGACTGT 59.003 41.667 13.68 13.68 0.00 3.55
6985 8151 4.997395 ACCAACAAGCTAACATACAGACTG 59.003 41.667 0.00 0.00 0.00 3.51
6986 8152 5.228945 ACCAACAAGCTAACATACAGACT 57.771 39.130 0.00 0.00 0.00 3.24
6987 8153 7.429636 TTTACCAACAAGCTAACATACAGAC 57.570 36.000 0.00 0.00 0.00 3.51
6988 8154 8.630054 ATTTTACCAACAAGCTAACATACAGA 57.370 30.769 0.00 0.00 0.00 3.41
6993 8159 9.019656 TGACATATTTTACCAACAAGCTAACAT 57.980 29.630 0.00 0.00 0.00 2.71
6994 8160 8.397575 TGACATATTTTACCAACAAGCTAACA 57.602 30.769 0.00 0.00 0.00 2.41
6995 8161 9.289303 CATGACATATTTTACCAACAAGCTAAC 57.711 33.333 0.00 0.00 0.00 2.34
6996 8162 9.019656 ACATGACATATTTTACCAACAAGCTAA 57.980 29.630 0.00 0.00 0.00 3.09
6997 8163 8.574251 ACATGACATATTTTACCAACAAGCTA 57.426 30.769 0.00 0.00 0.00 3.32
6998 8164 7.176515 TGACATGACATATTTTACCAACAAGCT 59.823 33.333 0.00 0.00 0.00 3.74
6999 8165 7.312154 TGACATGACATATTTTACCAACAAGC 58.688 34.615 0.00 0.00 0.00 4.01
7000 8166 9.507280 GATGACATGACATATTTTACCAACAAG 57.493 33.333 10.67 0.00 0.00 3.16
7001 8167 9.018582 TGATGACATGACATATTTTACCAACAA 57.981 29.630 10.67 0.00 0.00 2.83
7002 8168 8.572855 TGATGACATGACATATTTTACCAACA 57.427 30.769 10.67 0.00 0.00 3.33
7003 8169 9.289303 GTTGATGACATGACATATTTTACCAAC 57.711 33.333 10.67 13.54 0.00 3.77
7004 8170 8.465999 GGTTGATGACATGACATATTTTACCAA 58.534 33.333 10.67 6.41 0.00 3.67
7005 8171 7.613411 TGGTTGATGACATGACATATTTTACCA 59.387 33.333 10.67 14.74 0.00 3.25
7006 8172 7.995289 TGGTTGATGACATGACATATTTTACC 58.005 34.615 10.67 12.80 0.00 2.85
7007 8173 7.645340 GCTGGTTGATGACATGACATATTTTAC 59.355 37.037 10.67 5.24 0.00 2.01
7008 8174 7.338957 TGCTGGTTGATGACATGACATATTTTA 59.661 33.333 10.67 0.00 0.00 1.52
7009 8175 6.153170 TGCTGGTTGATGACATGACATATTTT 59.847 34.615 10.67 0.00 0.00 1.82
7010 8176 5.653330 TGCTGGTTGATGACATGACATATTT 59.347 36.000 10.67 0.00 0.00 1.40
7011 8177 5.066893 GTGCTGGTTGATGACATGACATATT 59.933 40.000 10.67 0.00 0.00 1.28
7012 8178 4.577693 GTGCTGGTTGATGACATGACATAT 59.422 41.667 10.67 0.00 0.00 1.78
7013 8179 3.940852 GTGCTGGTTGATGACATGACATA 59.059 43.478 10.67 0.00 0.00 2.29
7014 8180 2.751259 GTGCTGGTTGATGACATGACAT 59.249 45.455 10.50 10.50 0.00 3.06
7015 8181 2.153645 GTGCTGGTTGATGACATGACA 58.846 47.619 0.00 0.00 0.00 3.58
7016 8182 1.470098 GGTGCTGGTTGATGACATGAC 59.530 52.381 0.00 0.00 0.00 3.06
7017 8183 1.352017 AGGTGCTGGTTGATGACATGA 59.648 47.619 0.00 0.00 0.00 3.07
7018 8184 1.830279 AGGTGCTGGTTGATGACATG 58.170 50.000 0.00 0.00 0.00 3.21
7019 8185 2.165167 CAAGGTGCTGGTTGATGACAT 58.835 47.619 0.00 0.00 0.00 3.06
7020 8186 1.142667 TCAAGGTGCTGGTTGATGACA 59.857 47.619 0.00 0.00 0.00 3.58
7021 8187 1.537202 GTCAAGGTGCTGGTTGATGAC 59.463 52.381 0.00 0.00 35.22 3.06
7022 8188 1.142667 TGTCAAGGTGCTGGTTGATGA 59.857 47.619 0.00 0.00 35.22 2.92
7023 8189 1.608055 TGTCAAGGTGCTGGTTGATG 58.392 50.000 0.00 0.00 35.22 3.07
7024 8190 2.592102 ATGTCAAGGTGCTGGTTGAT 57.408 45.000 0.00 0.00 35.22 2.57
7025 8191 3.500448 TTATGTCAAGGTGCTGGTTGA 57.500 42.857 0.00 0.00 0.00 3.18
7026 8192 4.202101 TGTTTTATGTCAAGGTGCTGGTTG 60.202 41.667 0.00 0.00 0.00 3.77
7027 8193 3.957497 TGTTTTATGTCAAGGTGCTGGTT 59.043 39.130 0.00 0.00 0.00 3.67
7028 8194 3.561143 TGTTTTATGTCAAGGTGCTGGT 58.439 40.909 0.00 0.00 0.00 4.00
7029 8195 4.037923 AGTTGTTTTATGTCAAGGTGCTGG 59.962 41.667 0.00 0.00 0.00 4.85
7030 8196 5.186996 AGTTGTTTTATGTCAAGGTGCTG 57.813 39.130 0.00 0.00 0.00 4.41
7031 8197 5.359576 TGAAGTTGTTTTATGTCAAGGTGCT 59.640 36.000 0.00 0.00 0.00 4.40
7032 8198 5.587289 TGAAGTTGTTTTATGTCAAGGTGC 58.413 37.500 0.00 0.00 0.00 5.01
7033 8199 7.169645 CCATTGAAGTTGTTTTATGTCAAGGTG 59.830 37.037 0.00 0.00 0.00 4.00
7034 8200 7.209475 CCATTGAAGTTGTTTTATGTCAAGGT 58.791 34.615 0.00 0.00 0.00 3.50
7035 8201 6.646240 CCCATTGAAGTTGTTTTATGTCAAGG 59.354 38.462 0.00 0.00 0.00 3.61
7036 8202 7.209475 ACCCATTGAAGTTGTTTTATGTCAAG 58.791 34.615 0.00 0.00 0.00 3.02
7037 8203 7.118496 ACCCATTGAAGTTGTTTTATGTCAA 57.882 32.000 0.00 0.00 0.00 3.18
7038 8204 6.723298 ACCCATTGAAGTTGTTTTATGTCA 57.277 33.333 0.00 0.00 0.00 3.58
7039 8205 7.406799 CAACCCATTGAAGTTGTTTTATGTC 57.593 36.000 9.92 0.00 38.81 3.06
7048 8214 7.687941 AACTAGATACAACCCATTGAAGTTG 57.312 36.000 14.34 14.34 46.95 3.16
7049 8215 8.110860 CAAACTAGATACAACCCATTGAAGTT 57.889 34.615 0.00 0.00 39.30 2.66
7050 8216 7.687941 CAAACTAGATACAACCCATTGAAGT 57.312 36.000 0.00 0.00 39.30 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.