Multiple sequence alignment - TraesCS4A01G040800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G040800 chr4A 100.000 6805 0 0 1 6805 34048093 34041289 0.000000e+00 12567.0
1 TraesCS4A01G040800 chr4A 89.268 997 74 11 3951 4918 45103553 45102561 0.000000e+00 1218.0
2 TraesCS4A01G040800 chr4A 93.023 86 3 3 2697 2782 650667081 650667163 9.270000e-24 122.0
3 TraesCS4A01G040800 chr4A 87.838 74 2 5 3847 3914 45103786 45103714 5.660000e-11 80.5
4 TraesCS4A01G040800 chr4D 89.773 1408 56 22 1 1377 432768176 432766826 0.000000e+00 1722.0
5 TraesCS4A01G040800 chr4D 89.483 1179 81 15 1464 2631 432766713 432765567 0.000000e+00 1450.0
6 TraesCS4A01G040800 chr4D 88.982 1189 67 19 4981 6143 432764369 432763219 0.000000e+00 1411.0
7 TraesCS4A01G040800 chr4D 90.771 856 39 17 2994 3843 432765176 432764355 0.000000e+00 1107.0
8 TraesCS4A01G040800 chr4D 87.241 580 33 22 6148 6695 432763181 432762611 2.080000e-174 623.0
9 TraesCS4A01G040800 chr4D 90.870 230 18 3 2780 3008 432765425 432765198 8.570000e-79 305.0
10 TraesCS4A01G040800 chr4D 91.667 96 3 3 6711 6804 432762627 432762535 1.990000e-25 128.0
11 TraesCS4A01G040800 chr4B 86.212 1436 102 32 3 1377 530471502 530472902 0.000000e+00 1467.0
12 TraesCS4A01G040800 chr4B 90.977 1064 72 15 1456 2499 530472996 530474055 0.000000e+00 1411.0
13 TraesCS4A01G040800 chr4B 89.276 1091 85 18 2771 3843 530474212 530475288 0.000000e+00 1338.0
14 TraesCS4A01G040800 chr4B 80.172 696 82 39 4981 5639 530475274 530475950 2.870000e-128 470.0
15 TraesCS4A01G040800 chr4B 89.320 206 17 2 5942 6143 530476269 530476473 3.150000e-63 254.0
16 TraesCS4A01G040800 chr1D 87.179 1131 95 32 3895 4980 24569597 24568472 0.000000e+00 1240.0
17 TraesCS4A01G040800 chr7D 88.332 917 73 23 4094 4980 16755380 16754468 0.000000e+00 1070.0
18 TraesCS4A01G040800 chr7D 94.399 607 30 3 4374 4980 592898118 592897516 0.000000e+00 929.0
19 TraesCS4A01G040800 chr7B 87.238 956 81 27 4062 4980 640481806 640480855 0.000000e+00 1051.0
20 TraesCS4A01G040800 chr7B 93.103 87 5 1 2696 2782 724217465 724217380 7.160000e-25 126.0
21 TraesCS4A01G040800 chr2B 87.691 853 70 25 4160 4981 66778922 66778074 0.000000e+00 961.0
22 TraesCS4A01G040800 chr2B 90.323 93 7 2 2682 2773 28990421 28990512 3.330000e-23 121.0
23 TraesCS4A01G040800 chr2D 94.737 608 30 2 4374 4981 6957396 6956791 0.000000e+00 944.0
24 TraesCS4A01G040800 chr5B 94.243 608 32 2 4374 4981 696386794 696387398 0.000000e+00 926.0
25 TraesCS4A01G040800 chr5B 90.307 423 39 1 3952 4372 696386340 696386762 2.770000e-153 553.0
26 TraesCS4A01G040800 chr5B 86.815 493 49 8 3895 4372 563962612 563962121 2.790000e-148 536.0
27 TraesCS4A01G040800 chr5B 94.186 86 4 1 2698 2783 43450378 43450294 5.540000e-26 130.0
28 TraesCS4A01G040800 chrUn 94.098 610 30 5 4374 4981 347314184 347314789 0.000000e+00 922.0
29 TraesCS4A01G040800 chrUn 97.403 77 2 0 2697 2773 8470660 8470736 1.540000e-26 132.0
30 TraesCS4A01G040800 chr6A 94.079 608 32 4 4374 4981 11144232 11143629 0.000000e+00 920.0
31 TraesCS4A01G040800 chr5A 91.038 424 36 1 3951 4372 8504092 8503669 7.660000e-159 571.0
32 TraesCS4A01G040800 chr5A 86.842 494 45 8 3898 4372 74530706 74530214 1.000000e-147 534.0
33 TraesCS4A01G040800 chr3B 88.211 492 41 9 3897 4372 801109141 801109631 7.660000e-159 571.0
34 TraesCS4A01G040800 chr6B 88.759 427 45 3 3948 4372 620624180 620624605 2.810000e-143 520.0
35 TraesCS4A01G040800 chr6B 96.471 85 2 1 2699 2783 57422539 57422622 9.200000e-29 139.0
36 TraesCS4A01G040800 chr1A 85.595 479 62 4 3896 4372 9976982 9977455 4.740000e-136 496.0
37 TraesCS4A01G040800 chr1A 93.103 87 4 2 2698 2783 11418241 11418326 7.160000e-25 126.0
38 TraesCS4A01G040800 chr6D 93.103 87 5 1 2697 2783 13673334 13673249 7.160000e-25 126.0
39 TraesCS4A01G040800 chr6D 92.135 89 4 3 2697 2783 17204438 17204351 9.270000e-24 122.0
40 TraesCS4A01G040800 chr7A 93.333 60 4 0 3839 3898 94304711 94304770 9.400000e-14 89.8
41 TraesCS4A01G040800 chr3D 92.857 56 3 1 3854 3909 572755039 572755093 5.660000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G040800 chr4A 34041289 34048093 6804 True 12567.000000 12567 100.000000 1 6805 1 chr4A.!!$R1 6804
1 TraesCS4A01G040800 chr4A 45102561 45103786 1225 True 649.250000 1218 88.553000 3847 4918 2 chr4A.!!$R2 1071
2 TraesCS4A01G040800 chr4D 432762535 432768176 5641 True 963.714286 1722 89.826714 1 6804 7 chr4D.!!$R1 6803
3 TraesCS4A01G040800 chr4B 530471502 530476473 4971 False 988.000000 1467 87.191400 3 6143 5 chr4B.!!$F1 6140
4 TraesCS4A01G040800 chr1D 24568472 24569597 1125 True 1240.000000 1240 87.179000 3895 4980 1 chr1D.!!$R1 1085
5 TraesCS4A01G040800 chr7D 16754468 16755380 912 True 1070.000000 1070 88.332000 4094 4980 1 chr7D.!!$R1 886
6 TraesCS4A01G040800 chr7D 592897516 592898118 602 True 929.000000 929 94.399000 4374 4980 1 chr7D.!!$R2 606
7 TraesCS4A01G040800 chr7B 640480855 640481806 951 True 1051.000000 1051 87.238000 4062 4980 1 chr7B.!!$R1 918
8 TraesCS4A01G040800 chr2B 66778074 66778922 848 True 961.000000 961 87.691000 4160 4981 1 chr2B.!!$R1 821
9 TraesCS4A01G040800 chr2D 6956791 6957396 605 True 944.000000 944 94.737000 4374 4981 1 chr2D.!!$R1 607
10 TraesCS4A01G040800 chr5B 696386340 696387398 1058 False 739.500000 926 92.275000 3952 4981 2 chr5B.!!$F1 1029
11 TraesCS4A01G040800 chrUn 347314184 347314789 605 False 922.000000 922 94.098000 4374 4981 1 chrUn.!!$F2 607
12 TraesCS4A01G040800 chr6A 11143629 11144232 603 True 920.000000 920 94.079000 4374 4981 1 chr6A.!!$R1 607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 954 1.098712 TGGTTGCTTCGCTCCGTTTT 61.099 50.0 0.0 0.0 0.00 2.43 F
1395 1489 0.402504 TTTTGCGGGGGTACTGATGT 59.597 50.0 0.0 0.0 0.00 3.06 F
1397 1491 0.402504 TTGCGGGGGTACTGATGTTT 59.597 50.0 0.0 0.0 0.00 2.83 F
1893 2050 0.687354 GAAGCCTCTTGGTCAGGTCA 59.313 55.0 0.0 0.0 32.98 4.02 F
2741 3013 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.0 0.0 0.0 40.18 2.52 F
3845 4172 0.108424 AAGCATCTGTCCTGTCGAGC 60.108 55.0 0.0 0.0 0.00 5.03 F
4257 4724 0.108585 GGCTCTTTGGTGGTGAGACA 59.891 55.0 0.0 0.0 35.99 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2722 2994 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13 R
2733 3005 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27 R
2734 3006 1.667236 TGGCCGTATGCATCTTTCTG 58.333 50.000 0.19 0.00 43.89 3.02 R
3458 3776 0.321671 ACCATCCGACTTCACCTGTG 59.678 55.000 0.00 0.00 0.00 3.66 R
4235 4702 0.179020 CTCACCACCAAAGAGCCACA 60.179 55.000 0.00 0.00 0.00 4.17 R
5615 6142 0.108138 GCAGCGGGATACAGTTCTGT 60.108 55.000 10.33 10.33 39.74 3.41 R
6177 6820 0.110419 TTGAAACGAGCGGCGAAATG 60.110 50.000 12.98 0.00 44.57 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 40 4.080526 GGAATGGAGGGAGTAGCTGTTAAA 60.081 45.833 0.00 0.00 0.00 1.52
127 132 1.885871 GCCTGAAGCAACACCCATC 59.114 57.895 0.00 0.00 42.97 3.51
157 162 3.119849 GCAGTCCAATTAACATGAAGCGT 60.120 43.478 0.00 0.00 0.00 5.07
196 201 7.065803 GCTAGCATTTCTTTAGTGACAATACCA 59.934 37.037 10.63 0.00 0.00 3.25
211 216 6.326323 TGACAATACCAGCCTGATATCTTACA 59.674 38.462 3.98 0.00 0.00 2.41
220 225 7.718753 CCAGCCTGATATCTTACAAAGAGAATT 59.281 37.037 3.98 0.00 41.61 2.17
255 260 5.567138 ACAACATACCTGCAGAAATTAGC 57.433 39.130 17.39 0.00 0.00 3.09
316 328 7.520453 GCATTGACTTCACAGAAATCAGTGTAA 60.520 37.037 12.79 0.35 35.28 2.41
353 365 6.362016 CGCAAAAAGAAGTTACACATGCATTA 59.638 34.615 0.00 0.00 0.00 1.90
354 366 7.062138 CGCAAAAAGAAGTTACACATGCATTAT 59.938 33.333 0.00 0.00 0.00 1.28
355 367 9.352784 GCAAAAAGAAGTTACACATGCATTATA 57.647 29.630 0.00 0.00 0.00 0.98
430 471 4.774124 CTGGAATTGAGCTTAGATGTCCA 58.226 43.478 0.00 0.00 33.07 4.02
444 485 4.543689 AGATGTCCATGGAAGCATCAAAT 58.456 39.130 31.71 17.95 39.90 2.32
597 638 2.186384 GCCACTCTCAGCATCGCT 59.814 61.111 0.00 0.00 40.77 4.93
877 954 1.098712 TGGTTGCTTCGCTCCGTTTT 61.099 50.000 0.00 0.00 0.00 2.43
907 984 2.506438 GCGACACTGCCCGAGTAC 60.506 66.667 0.00 0.00 31.73 2.73
908 985 2.181021 CGACACTGCCCGAGTACC 59.819 66.667 0.00 0.00 31.73 3.34
936 1013 2.747855 CCGCTGGTTTCTCTGGCC 60.748 66.667 0.00 0.00 0.00 5.36
956 1033 3.324108 TGGGACCCACGGGCTAAC 61.324 66.667 9.95 0.00 39.32 2.34
1012 1094 4.043100 CTCCCGACCCAAACCCCC 62.043 72.222 0.00 0.00 0.00 5.40
1338 1432 4.688879 TGACGATCTGACACATTGGTTTAC 59.311 41.667 0.00 0.00 0.00 2.01
1342 1436 6.206634 ACGATCTGACACATTGGTTTACATTT 59.793 34.615 0.00 0.00 0.00 2.32
1366 1460 9.868277 TTTGTGTTTTCTCATTTACTGATGTTT 57.132 25.926 0.00 0.00 32.10 2.83
1367 1461 9.868277 TTGTGTTTTCTCATTTACTGATGTTTT 57.132 25.926 0.00 0.00 32.10 2.43
1382 1476 7.894847 ACTGATGTTTTACTTTTTCTTTTGCG 58.105 30.769 0.00 0.00 0.00 4.85
1383 1477 7.010091 ACTGATGTTTTACTTTTTCTTTTGCGG 59.990 33.333 0.00 0.00 0.00 5.69
1384 1478 6.256757 TGATGTTTTACTTTTTCTTTTGCGGG 59.743 34.615 0.00 0.00 0.00 6.13
1385 1479 4.870991 TGTTTTACTTTTTCTTTTGCGGGG 59.129 37.500 0.00 0.00 0.00 5.73
1386 1480 3.737032 TTACTTTTTCTTTTGCGGGGG 57.263 42.857 0.00 0.00 0.00 5.40
1387 1481 1.491668 ACTTTTTCTTTTGCGGGGGT 58.508 45.000 0.00 0.00 0.00 4.95
1388 1482 2.668625 ACTTTTTCTTTTGCGGGGGTA 58.331 42.857 0.00 0.00 0.00 3.69
1389 1483 2.363038 ACTTTTTCTTTTGCGGGGGTAC 59.637 45.455 0.00 0.00 0.00 3.34
1390 1484 2.368311 TTTTCTTTTGCGGGGGTACT 57.632 45.000 0.00 0.00 0.00 2.73
1391 1485 1.611519 TTTCTTTTGCGGGGGTACTG 58.388 50.000 0.00 0.00 0.00 2.74
1392 1486 0.766131 TTCTTTTGCGGGGGTACTGA 59.234 50.000 0.00 0.00 0.00 3.41
1393 1487 0.988832 TCTTTTGCGGGGGTACTGAT 59.011 50.000 0.00 0.00 0.00 2.90
1394 1488 1.094785 CTTTTGCGGGGGTACTGATG 58.905 55.000 0.00 0.00 0.00 3.07
1395 1489 0.402504 TTTTGCGGGGGTACTGATGT 59.597 50.000 0.00 0.00 0.00 3.06
1396 1490 0.402504 TTTGCGGGGGTACTGATGTT 59.597 50.000 0.00 0.00 0.00 2.71
1397 1491 0.402504 TTGCGGGGGTACTGATGTTT 59.597 50.000 0.00 0.00 0.00 2.83
1443 1554 2.036217 CCAATGAAAAGGCTTGTGCTCA 59.964 45.455 0.00 2.27 39.59 4.26
1444 1555 3.306502 CCAATGAAAAGGCTTGTGCTCAT 60.307 43.478 0.00 4.64 39.59 2.90
1446 1557 2.585330 TGAAAAGGCTTGTGCTCATCA 58.415 42.857 0.00 0.00 39.59 3.07
1447 1558 2.555325 TGAAAAGGCTTGTGCTCATCAG 59.445 45.455 0.00 0.00 39.59 2.90
1448 1559 2.283145 AAAGGCTTGTGCTCATCAGT 57.717 45.000 0.00 0.00 39.59 3.41
1449 1560 3.423539 AAAGGCTTGTGCTCATCAGTA 57.576 42.857 0.00 0.00 39.59 2.74
1450 1561 3.423539 AAGGCTTGTGCTCATCAGTAA 57.576 42.857 0.00 0.00 39.59 2.24
1452 1563 2.038952 AGGCTTGTGCTCATCAGTAACA 59.961 45.455 0.00 0.00 39.59 2.41
1453 1564 2.813754 GGCTTGTGCTCATCAGTAACAA 59.186 45.455 0.00 0.00 39.59 2.83
1454 1565 3.120060 GGCTTGTGCTCATCAGTAACAAG 60.120 47.826 9.08 9.08 43.00 3.16
1459 1608 3.741344 GTGCTCATCAGTAACAAGAACGT 59.259 43.478 0.00 0.00 0.00 3.99
1460 1609 4.211374 GTGCTCATCAGTAACAAGAACGTT 59.789 41.667 0.00 0.00 0.00 3.99
1731 1888 2.365617 GCCCATAATTCACTCCTCGAGA 59.634 50.000 15.71 0.00 33.32 4.04
1782 1939 3.219176 TGATCAAGGGAGATGAATGCC 57.781 47.619 0.00 0.00 0.00 4.40
1783 1940 2.781757 TGATCAAGGGAGATGAATGCCT 59.218 45.455 0.00 0.00 43.93 4.75
1831 1988 2.145536 CAATTTTGTTGAGCTTGGGGC 58.854 47.619 0.00 0.00 42.19 5.80
1865 2022 5.009210 AGCACCTTTCTACGAGATGACTATC 59.991 44.000 0.00 0.00 0.00 2.08
1891 2048 0.689623 CAGAAGCCTCTTGGTCAGGT 59.310 55.000 0.00 0.00 32.98 4.00
1893 2050 0.687354 GAAGCCTCTTGGTCAGGTCA 59.313 55.000 0.00 0.00 32.98 4.02
1936 2096 7.496591 ACCAAAAATTGTACGAGTACTTCTTGA 59.503 33.333 13.67 0.00 37.00 3.02
1940 2107 7.813852 AATTGTACGAGTACTTCTTGATGAC 57.186 36.000 13.67 0.00 37.00 3.06
1944 2111 4.748892 ACGAGTACTTCTTGATGACCATG 58.251 43.478 0.00 0.00 0.00 3.66
1949 2116 7.201444 CGAGTACTTCTTGATGACCATGTTTAC 60.201 40.741 0.00 0.00 0.00 2.01
2015 2184 5.093849 TCTACCATGTTTTAGGTACCTGC 57.906 43.478 25.33 11.95 39.31 4.85
2016 2185 3.799432 ACCATGTTTTAGGTACCTGCA 57.201 42.857 25.33 16.88 36.07 4.41
2172 2342 3.386768 TCTTTAGTGCAGGTGTCTCAC 57.613 47.619 0.00 0.00 0.00 3.51
2208 2378 9.793259 TCTAAGTGAACAGTCCATCTTTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
2306 2477 5.853936 TCCTGGTATGTGAATGTAGCATAC 58.146 41.667 0.00 0.00 42.28 2.39
2367 2539 5.182950 TGTTAAGGTTGTATTGGCAGATGTG 59.817 40.000 0.00 0.00 0.00 3.21
2484 2656 2.325583 TGTGTTCGCCAGAAAGAAGT 57.674 45.000 0.00 0.00 38.23 3.01
2490 2662 2.413837 TCGCCAGAAAGAAGTGTAAGC 58.586 47.619 0.00 0.00 0.00 3.09
2521 2693 3.817647 TCTTTCTTCTTCTTCTGCCAAGC 59.182 43.478 0.00 0.00 0.00 4.01
2526 2698 0.956633 CTTCTTCTGCCAAGCAAGCA 59.043 50.000 0.00 0.00 38.41 3.91
2577 2749 4.287067 TGGCTGACTTTCCTGTATTTCTCT 59.713 41.667 0.00 0.00 0.00 3.10
2631 2803 7.730364 AGACTACACTGGATTGTTAACTTTG 57.270 36.000 7.22 0.00 0.00 2.77
2632 2804 6.710744 AGACTACACTGGATTGTTAACTTTGG 59.289 38.462 7.22 0.00 0.00 3.28
2633 2805 6.597562 ACTACACTGGATTGTTAACTTTGGA 58.402 36.000 7.22 0.00 0.00 3.53
2634 2806 7.231467 ACTACACTGGATTGTTAACTTTGGAT 58.769 34.615 7.22 0.00 0.00 3.41
2683 2955 4.333649 TGCTTGAATGTTAGCACAGCTATC 59.666 41.667 0.00 0.20 42.12 2.08
2697 2969 5.279406 GCACAGCTATCTGATATCTGACCTT 60.279 44.000 26.63 8.79 42.95 3.50
2699 2971 7.215789 CACAGCTATCTGATATCTGACCTTTT 58.784 38.462 26.63 7.93 42.95 2.27
2700 2972 7.714377 CACAGCTATCTGATATCTGACCTTTTT 59.286 37.037 26.63 7.36 42.95 1.94
2720 2992 3.446310 TTTTCGAAAAGAGGGTTTGCC 57.554 42.857 19.08 0.00 0.00 4.52
2736 3008 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2737 3009 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2738 3010 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
2739 3011 1.078214 CCGGCCTCTGCATCAGAAA 60.078 57.895 0.00 0.00 40.18 2.52
2740 3012 1.094073 CCGGCCTCTGCATCAGAAAG 61.094 60.000 0.00 0.00 40.18 2.62
2741 3013 0.107993 CGGCCTCTGCATCAGAAAGA 60.108 55.000 0.00 0.00 40.18 2.52
2742 3014 1.474677 CGGCCTCTGCATCAGAAAGAT 60.475 52.381 0.00 0.00 40.18 2.40
2751 3023 3.532892 CATCAGAAAGATGCATACGGC 57.467 47.619 0.00 0.00 46.90 5.68
2752 3024 1.953559 TCAGAAAGATGCATACGGCC 58.046 50.000 0.00 0.00 43.89 6.13
2753 3025 1.209261 TCAGAAAGATGCATACGGCCA 59.791 47.619 2.24 0.00 43.89 5.36
2754 3026 2.158769 TCAGAAAGATGCATACGGCCAT 60.159 45.455 2.24 0.00 43.89 4.40
2755 3027 3.070878 TCAGAAAGATGCATACGGCCATA 59.929 43.478 2.24 0.00 43.89 2.74
2756 3028 4.005650 CAGAAAGATGCATACGGCCATAT 58.994 43.478 2.24 0.00 43.89 1.78
2757 3029 4.456911 CAGAAAGATGCATACGGCCATATT 59.543 41.667 2.24 0.00 43.89 1.28
2758 3030 5.643348 CAGAAAGATGCATACGGCCATATTA 59.357 40.000 2.24 0.00 43.89 0.98
2759 3031 6.317140 CAGAAAGATGCATACGGCCATATTAT 59.683 38.462 2.24 0.00 43.89 1.28
2760 3032 6.886459 AGAAAGATGCATACGGCCATATTATT 59.114 34.615 2.24 0.00 43.89 1.40
2761 3033 6.441093 AAGATGCATACGGCCATATTATTG 57.559 37.500 2.24 0.00 43.89 1.90
2762 3034 5.744171 AGATGCATACGGCCATATTATTGA 58.256 37.500 2.24 0.00 43.89 2.57
2763 3035 6.359804 AGATGCATACGGCCATATTATTGAT 58.640 36.000 2.24 0.00 43.89 2.57
2764 3036 7.508687 AGATGCATACGGCCATATTATTGATA 58.491 34.615 2.24 0.00 43.89 2.15
2765 3037 7.992608 AGATGCATACGGCCATATTATTGATAA 59.007 33.333 2.24 0.00 43.89 1.75
2766 3038 7.552458 TGCATACGGCCATATTATTGATAAG 57.448 36.000 2.24 0.00 43.89 1.73
2767 3039 6.038161 TGCATACGGCCATATTATTGATAAGC 59.962 38.462 2.24 0.00 43.89 3.09
2768 3040 6.038161 GCATACGGCCATATTATTGATAAGCA 59.962 38.462 2.24 0.00 36.11 3.91
2769 3041 7.415095 GCATACGGCCATATTATTGATAAGCAA 60.415 37.037 2.24 0.00 37.45 3.91
2770 3042 6.892658 ACGGCCATATTATTGATAAGCAAA 57.107 33.333 2.24 0.00 40.48 3.68
2771 3043 7.283625 ACGGCCATATTATTGATAAGCAAAA 57.716 32.000 2.24 0.00 40.48 2.44
2772 3044 7.370383 ACGGCCATATTATTGATAAGCAAAAG 58.630 34.615 2.24 0.00 40.48 2.27
2773 3045 6.808212 CGGCCATATTATTGATAAGCAAAAGG 59.192 38.462 2.24 0.00 40.48 3.11
2774 3046 7.523709 CGGCCATATTATTGATAAGCAAAAGGT 60.524 37.037 2.24 0.00 40.48 3.50
2775 3047 8.150296 GGCCATATTATTGATAAGCAAAAGGTT 58.850 33.333 0.00 0.00 40.48 3.50
2782 3054 9.906660 TTATTGATAAGCAAAAGGTTACAACAG 57.093 29.630 0.00 0.00 40.48 3.16
2783 3055 5.768317 TGATAAGCAAAAGGTTACAACAGC 58.232 37.500 0.00 0.00 0.00 4.40
2784 3056 5.534654 TGATAAGCAAAAGGTTACAACAGCT 59.465 36.000 0.00 0.00 0.00 4.24
2785 3057 6.712998 TGATAAGCAAAAGGTTACAACAGCTA 59.287 34.615 0.00 0.00 0.00 3.32
2786 3058 7.393234 TGATAAGCAAAAGGTTACAACAGCTAT 59.607 33.333 0.00 0.00 0.00 2.97
2787 3059 5.629079 AGCAAAAGGTTACAACAGCTATC 57.371 39.130 0.00 0.00 0.00 2.08
2788 3060 5.316987 AGCAAAAGGTTACAACAGCTATCT 58.683 37.500 0.00 0.00 0.00 1.98
2789 3061 5.182001 AGCAAAAGGTTACAACAGCTATCTG 59.818 40.000 0.00 0.00 45.71 2.90
2790 3062 5.181245 GCAAAAGGTTACAACAGCTATCTGA 59.819 40.000 0.00 0.00 42.95 3.27
2791 3063 6.127897 GCAAAAGGTTACAACAGCTATCTGAT 60.128 38.462 0.00 0.00 42.95 2.90
2792 3064 7.065803 GCAAAAGGTTACAACAGCTATCTGATA 59.934 37.037 0.00 0.00 42.95 2.15
2793 3065 9.113838 CAAAAGGTTACAACAGCTATCTGATAT 57.886 33.333 0.00 0.00 42.95 1.63
2794 3066 8.894768 AAAGGTTACAACAGCTATCTGATATC 57.105 34.615 0.00 0.00 42.95 1.63
2795 3067 7.847711 AGGTTACAACAGCTATCTGATATCT 57.152 36.000 3.98 0.00 42.95 1.98
2796 3068 7.665690 AGGTTACAACAGCTATCTGATATCTG 58.334 38.462 21.04 21.04 42.95 2.90
2797 3069 7.507277 AGGTTACAACAGCTATCTGATATCTGA 59.493 37.037 26.63 13.92 42.95 3.27
2798 3070 7.596995 GGTTACAACAGCTATCTGATATCTGAC 59.403 40.741 26.63 16.84 42.95 3.51
2799 3071 6.095432 ACAACAGCTATCTGATATCTGACC 57.905 41.667 26.63 6.56 42.95 4.02
2800 3072 5.837979 ACAACAGCTATCTGATATCTGACCT 59.162 40.000 26.63 12.96 42.95 3.85
2801 3073 7.007116 ACAACAGCTATCTGATATCTGACCTA 58.993 38.462 26.63 4.10 42.95 3.08
2810 3082 7.071069 TCTGATATCTGACCTAAATGCATGT 57.929 36.000 0.00 0.00 0.00 3.21
2819 3091 6.148948 TGACCTAAATGCATGTTTCTTTTCG 58.851 36.000 0.00 0.00 0.00 3.46
2820 3092 4.923281 ACCTAAATGCATGTTTCTTTTCGC 59.077 37.500 0.00 0.00 0.00 4.70
2822 3094 4.977741 AAATGCATGTTTCTTTTCGCAG 57.022 36.364 0.00 0.00 32.10 5.18
2830 3102 6.403200 GCATGTTTCTTTTCGCAGTATTCCTA 60.403 38.462 0.00 0.00 0.00 2.94
2831 3103 7.679638 GCATGTTTCTTTTCGCAGTATTCCTAT 60.680 37.037 0.00 0.00 0.00 2.57
2843 3115 9.448438 TCGCAGTATTCCTATATATTGCATTTT 57.552 29.630 10.38 0.00 41.27 1.82
2915 3192 5.936187 TGTGGTGTCCTATTATTTACGGA 57.064 39.130 0.00 0.00 0.00 4.69
3011 3324 4.789012 ATGCTTGTTGGTAGTTTCATGG 57.211 40.909 0.00 0.00 0.00 3.66
3049 3362 4.441634 CGGACTAAAACGGATCCATCTTCT 60.442 45.833 13.41 0.00 0.00 2.85
3050 3363 5.221185 CGGACTAAAACGGATCCATCTTCTA 60.221 44.000 13.41 0.00 0.00 2.10
3051 3364 6.516860 CGGACTAAAACGGATCCATCTTCTAT 60.517 42.308 13.41 0.00 0.00 1.98
3052 3365 7.217906 GGACTAAAACGGATCCATCTTCTATT 58.782 38.462 13.41 0.00 0.00 1.73
3053 3366 7.385478 GGACTAAAACGGATCCATCTTCTATTC 59.615 40.741 13.41 0.00 0.00 1.75
3054 3367 8.024145 ACTAAAACGGATCCATCTTCTATTCT 57.976 34.615 13.41 0.00 0.00 2.40
3055 3368 8.487028 ACTAAAACGGATCCATCTTCTATTCTT 58.513 33.333 13.41 0.00 0.00 2.52
3056 3369 7.793927 AAAACGGATCCATCTTCTATTCTTC 57.206 36.000 13.41 0.00 0.00 2.87
3101 3415 9.761504 TTAATGTAATAATCCCATTTGTGCATG 57.238 29.630 0.00 0.00 31.63 4.06
3103 3417 3.756933 ATAATCCCATTTGTGCATGGC 57.243 42.857 0.00 0.00 42.39 4.40
3137 3451 9.615295 GCATTTTTATGAATTGCAGTTCATTTT 57.385 25.926 33.65 18.86 44.23 1.82
3281 3595 3.476552 ACTGCGAAGATTTGTTGAGGAA 58.523 40.909 0.00 0.00 0.00 3.36
3302 3616 1.758862 GAATTGCTTCCATCTTGGGGG 59.241 52.381 0.00 0.00 38.32 5.40
3342 3656 3.296322 TTTATTGGCTGAAGGTTTGCG 57.704 42.857 0.00 0.00 0.00 4.85
3359 3673 1.202746 TGCGGCTAATATCCATGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
3363 3677 3.490348 GGCTAATATCCATGTGCAACCT 58.510 45.455 0.00 0.00 34.36 3.50
3364 3678 3.891366 GGCTAATATCCATGTGCAACCTT 59.109 43.478 0.00 0.00 34.36 3.50
3367 3681 6.040391 GGCTAATATCCATGTGCAACCTTTTA 59.960 38.462 0.00 0.00 34.36 1.52
3369 3683 7.809806 GCTAATATCCATGTGCAACCTTTTATC 59.190 37.037 0.00 0.00 34.36 1.75
3371 3685 7.902920 ATATCCATGTGCAACCTTTTATCTT 57.097 32.000 0.00 0.00 34.36 2.40
3374 3688 7.531857 TCCATGTGCAACCTTTTATCTTTTA 57.468 32.000 0.00 0.00 34.36 1.52
3436 3752 5.178996 TGGTGTCATTATTTTTGTGCAATGC 59.821 36.000 0.00 0.00 0.00 3.56
3458 3776 4.672801 GCGGTCCTGAAATCTCAACAAATC 60.673 45.833 0.00 0.00 0.00 2.17
3546 3864 3.935828 GTCTCCTTCTTGGCTACATCAAC 59.064 47.826 0.00 0.00 35.26 3.18
3578 3896 8.512966 AGTTCTTTCCTCTAGATTATTTTGCC 57.487 34.615 0.00 0.00 0.00 4.52
3612 3932 5.063204 TGAATTCAACGTTTGATCTGGACT 58.937 37.500 5.45 0.00 39.84 3.85
3658 3978 1.339535 GGTCTCCTGGCTTTCTTCCTG 60.340 57.143 0.00 0.00 0.00 3.86
3832 4159 6.736123 AGTTAATCATCTGCAATGAAGCATC 58.264 36.000 13.21 0.00 44.68 3.91
3833 4160 6.546403 AGTTAATCATCTGCAATGAAGCATCT 59.454 34.615 13.21 7.71 44.68 2.90
3834 4161 4.837896 ATCATCTGCAATGAAGCATCTG 57.162 40.909 13.21 0.00 44.68 2.90
3835 4162 3.617284 TCATCTGCAATGAAGCATCTGT 58.383 40.909 8.52 0.00 44.68 3.41
3836 4163 3.626217 TCATCTGCAATGAAGCATCTGTC 59.374 43.478 8.52 0.00 44.68 3.51
3837 4164 2.362736 TCTGCAATGAAGCATCTGTCC 58.637 47.619 0.00 0.00 44.68 4.02
3838 4165 2.026542 TCTGCAATGAAGCATCTGTCCT 60.027 45.455 0.00 0.00 44.68 3.85
3839 4166 2.089201 TGCAATGAAGCATCTGTCCTG 58.911 47.619 0.00 0.00 40.11 3.86
3840 4167 2.089980 GCAATGAAGCATCTGTCCTGT 58.910 47.619 0.00 0.00 0.00 4.00
3841 4168 2.097142 GCAATGAAGCATCTGTCCTGTC 59.903 50.000 0.00 0.00 0.00 3.51
3842 4169 2.306341 ATGAAGCATCTGTCCTGTCG 57.694 50.000 0.00 0.00 0.00 4.35
3843 4170 1.256812 TGAAGCATCTGTCCTGTCGA 58.743 50.000 0.00 0.00 0.00 4.20
3844 4171 1.203287 TGAAGCATCTGTCCTGTCGAG 59.797 52.381 0.00 0.00 0.00 4.04
3845 4172 0.108424 AAGCATCTGTCCTGTCGAGC 60.108 55.000 0.00 0.00 0.00 5.03
3846 4173 1.875813 GCATCTGTCCTGTCGAGCG 60.876 63.158 0.00 0.00 0.00 5.03
3847 4174 1.226802 CATCTGTCCTGTCGAGCGG 60.227 63.158 0.00 0.00 0.00 5.52
3848 4175 3.069980 ATCTGTCCTGTCGAGCGGC 62.070 63.158 0.00 0.00 0.00 6.53
3849 4176 3.753434 CTGTCCTGTCGAGCGGCT 61.753 66.667 0.00 0.00 0.00 5.52
3850 4177 2.360726 TGTCCTGTCGAGCGGCTA 60.361 61.111 0.60 0.00 0.00 3.93
3851 4178 2.329678 CTGTCCTGTCGAGCGGCTAG 62.330 65.000 0.60 2.25 0.00 3.42
3941 4389 3.348938 CCCCCTCCTCCTTCATCTT 57.651 57.895 0.00 0.00 0.00 2.40
3998 4459 4.078516 GGTGGACGTCCCTTCCCG 62.079 72.222 31.19 0.00 35.38 5.14
4000 4461 4.626402 TGGACGTCCCTTCCCGGT 62.626 66.667 31.19 0.00 35.38 5.28
4097 4560 4.589675 TTTTGCGGGCCTCGGGTT 62.590 61.111 14.29 0.00 39.69 4.11
4243 4710 4.664677 GTGCGACGGTGTGGCTCT 62.665 66.667 5.57 0.00 38.09 4.09
4253 4720 0.465460 GTGTGGCTCTTTGGTGGTGA 60.465 55.000 0.00 0.00 0.00 4.02
4257 4724 0.108585 GGCTCTTTGGTGGTGAGACA 59.891 55.000 0.00 0.00 35.99 3.41
4334 4801 3.923645 AGGGACTGTCCGGACCCA 61.924 66.667 31.19 13.44 44.25 4.51
4372 4839 3.177884 TGGTGGCCTGGCAAGTCT 61.178 61.111 22.05 0.00 0.00 3.24
4481 4978 1.305201 GCCTCAGTGAAACGGTGAAA 58.695 50.000 0.00 0.00 45.86 2.69
4685 5182 2.108976 CCACTGCCATCCGCGTAT 59.891 61.111 4.92 0.00 42.08 3.06
4742 5239 1.191425 CGTTGTCGTCGCATTTCTTCA 59.809 47.619 0.00 0.00 0.00 3.02
4870 5367 2.973224 CGTCGGCATTTGTTTCTTCTTG 59.027 45.455 0.00 0.00 0.00 3.02
4906 5406 6.702329 TCTTTTTCTTTTGGGCTTGTTTGTA 58.298 32.000 0.00 0.00 0.00 2.41
4939 5439 2.422597 CAAGCTGGTTGTATCGGTTGA 58.577 47.619 11.25 0.00 37.11 3.18
4981 5481 2.646175 GGGGGAAGCCCTTTTTCGC 61.646 63.158 2.01 0.00 44.66 4.70
4982 5482 1.906333 GGGGAAGCCCTTTTTCGCA 60.906 57.895 2.01 0.00 44.66 5.10
4983 5483 1.257750 GGGGAAGCCCTTTTTCGCAT 61.258 55.000 2.01 0.00 44.66 4.73
4984 5484 0.173481 GGGAAGCCCTTTTTCGCATC 59.827 55.000 0.00 0.00 41.34 3.91
5022 5525 5.643664 TGCAATGCAGCTCTTTTTATAGTG 58.356 37.500 2.72 0.00 33.32 2.74
5088 5591 6.759272 TCTTTCAGAATATATTCCTGGTCCG 58.241 40.000 19.67 5.47 37.51 4.79
5091 5594 6.346477 TCAGAATATATTCCTGGTCCGAAG 57.654 41.667 19.67 1.05 37.51 3.79
5136 5639 1.613255 GCAAGAGAATTGGGTTCCGGA 60.613 52.381 0.00 0.00 37.56 5.14
5178 5681 1.408683 CCGCTCCATTTCCAGGATTCA 60.409 52.381 0.00 0.00 33.99 2.57
5187 5690 6.953520 TCCATTTCCAGGATTCAATGTACTTT 59.046 34.615 10.32 0.00 0.00 2.66
5255 5760 5.412594 ACAGTTGAACAATTGCTGTATCGAT 59.587 36.000 12.28 2.16 37.23 3.59
5277 5782 6.573664 ATGTAATGCTTTTGTCTTGTAGCA 57.426 33.333 0.00 0.00 46.47 3.49
5308 5813 7.327761 GTCTCGTGTGTTTTCTGTAAATAGCTA 59.672 37.037 0.00 0.00 0.00 3.32
5335 5840 8.502105 TTTCTTTCGGTTCTCTTATAATTCCC 57.498 34.615 0.00 0.00 0.00 3.97
5381 5892 8.029522 CACTGCTGTGTTTAGACTCTCTTATTA 58.970 37.037 15.05 0.00 39.24 0.98
5382 5893 8.030106 ACTGCTGTGTTTAGACTCTCTTATTAC 58.970 37.037 0.00 0.00 0.00 1.89
5383 5894 8.123639 TGCTGTGTTTAGACTCTCTTATTACT 57.876 34.615 0.00 0.00 0.00 2.24
5424 5937 2.158623 TGTTGCTTCTTCAGGTGGTGAT 60.159 45.455 0.00 0.00 34.17 3.06
5495 6019 4.903649 ACTGGTTACCACTTACCACTAGTT 59.096 41.667 0.00 0.00 39.44 2.24
5508 6032 2.277084 CACTAGTTGGTACGGAATGGC 58.723 52.381 0.00 0.00 0.00 4.40
5511 6035 1.821216 AGTTGGTACGGAATGGCAAG 58.179 50.000 0.00 0.00 0.00 4.01
5557 6084 4.139859 TGTCAAAAGTTGGTAGGTTCGA 57.860 40.909 0.00 0.00 0.00 3.71
5603 6130 4.115516 CTGAAGGACGATCCACATTACAG 58.884 47.826 6.78 0.00 39.61 2.74
5612 6139 1.070914 TCCACATTACAGTGCCGTTCA 59.929 47.619 0.00 0.00 38.18 3.18
5615 6142 1.202710 ACATTACAGTGCCGTTCACCA 60.203 47.619 0.00 0.00 46.81 4.17
5629 6156 3.335579 GTTCACCACAGAACTGTATCCC 58.664 50.000 7.15 0.00 42.83 3.85
5688 6230 4.213564 TGCCACCAAAAACTTGAATTGT 57.786 36.364 0.00 0.00 0.00 2.71
5700 6242 4.646492 AACTTGAATTGTGCTCAAGGTCTT 59.354 37.500 14.87 1.98 45.62 3.01
5702 6244 5.936054 CTTGAATTGTGCTCAAGGTCTTAG 58.064 41.667 7.35 5.68 44.00 2.18
5703 6245 4.973168 TGAATTGTGCTCAAGGTCTTAGT 58.027 39.130 7.35 0.00 36.97 2.24
5704 6246 4.756642 TGAATTGTGCTCAAGGTCTTAGTG 59.243 41.667 7.35 0.00 36.97 2.74
5705 6247 4.623932 ATTGTGCTCAAGGTCTTAGTGA 57.376 40.909 7.35 0.00 36.97 3.41
5706 6248 3.386768 TGTGCTCAAGGTCTTAGTGAC 57.613 47.619 0.00 0.00 44.63 3.67
5707 6249 2.965831 TGTGCTCAAGGTCTTAGTGACT 59.034 45.455 0.00 0.00 44.74 3.41
5709 6251 2.300152 TGCTCAAGGTCTTAGTGACTGG 59.700 50.000 0.00 0.00 44.74 4.00
5711 6253 3.615351 GCTCAAGGTCTTAGTGACTGGTC 60.615 52.174 0.00 0.00 44.74 4.02
5712 6254 3.829601 CTCAAGGTCTTAGTGACTGGTCT 59.170 47.826 0.00 0.00 44.74 3.85
5713 6255 3.574396 TCAAGGTCTTAGTGACTGGTCTG 59.426 47.826 0.00 0.00 44.74 3.51
5714 6256 3.246416 AGGTCTTAGTGACTGGTCTGT 57.754 47.619 0.00 0.00 44.74 3.41
5715 6257 3.158676 AGGTCTTAGTGACTGGTCTGTC 58.841 50.000 0.00 1.74 44.74 3.51
5729 6271 4.744570 TGGTCTGTCGATCTAACATGAAC 58.255 43.478 0.00 0.00 0.00 3.18
5764 6306 5.945784 TCTTGAAGGGAACATTTGGATGTAG 59.054 40.000 0.00 0.00 45.58 2.74
5814 6356 2.237143 TCCCTGGTGCTGAAAGATACTG 59.763 50.000 0.00 0.00 34.07 2.74
5826 6368 4.263905 TGAAAGATACTGGGACCAATGCTT 60.264 41.667 0.00 0.00 0.00 3.91
5827 6369 3.287867 AGATACTGGGACCAATGCTTG 57.712 47.619 0.00 0.00 0.00 4.01
5882 6424 3.071479 TCCGTTTCCTTGTACAGAATGC 58.929 45.455 0.00 0.00 42.53 3.56
5888 6430 6.248631 GTTTCCTTGTACAGAATGCGTATTC 58.751 40.000 17.37 17.37 42.53 1.75
5889 6431 4.439057 TCCTTGTACAGAATGCGTATTCC 58.561 43.478 20.73 7.75 42.99 3.01
5921 6504 2.996168 AAGAAGCCGTTGTCGCTGCT 62.996 55.000 0.00 0.00 36.47 4.24
5922 6505 3.300667 GAAGCCGTTGTCGCTGCTG 62.301 63.158 0.00 0.00 35.49 4.41
5940 6523 1.513586 GCCGACGAGAACCACGTAG 60.514 63.158 0.00 0.00 43.97 3.51
5989 6589 1.976474 GCAAGCCGGATGGTGGAAA 60.976 57.895 5.05 0.00 37.67 3.13
6001 6601 1.752833 GTGGAAACGACAGGGAGGT 59.247 57.895 0.00 0.00 0.00 3.85
6021 6627 2.431942 GGTCCGGCTACGTGTGTG 60.432 66.667 0.00 0.00 38.78 3.82
6022 6628 2.431942 GTCCGGCTACGTGTGTGG 60.432 66.667 0.00 0.00 38.78 4.17
6023 6629 3.687102 TCCGGCTACGTGTGTGGG 61.687 66.667 0.00 0.00 38.78 4.61
6024 6630 3.998672 CCGGCTACGTGTGTGGGT 61.999 66.667 0.00 0.00 38.78 4.51
6025 6631 2.736995 CGGCTACGTGTGTGGGTG 60.737 66.667 0.00 0.00 34.81 4.61
6026 6632 2.424302 GGCTACGTGTGTGGGTGT 59.576 61.111 0.00 0.00 0.00 4.16
6186 6829 1.808234 GATCCGTCGTCATTTCGCCG 61.808 60.000 0.00 0.00 32.16 6.46
6198 6841 0.316360 TTTCGCCGCTCGTTTCAAAC 60.316 50.000 0.00 0.00 39.67 2.93
6213 6857 1.017387 CAAACCCTCATTAGCCGCTC 58.983 55.000 0.00 0.00 0.00 5.03
6266 6910 0.794605 GCTTCCGAATCGTTGCAAGC 60.795 55.000 0.00 6.07 0.00 4.01
6270 6914 1.059369 CGAATCGTTGCAAGCTCCG 59.941 57.895 0.00 0.00 0.00 4.63
6282 6926 0.108615 AAGCTCCGTCGATCAGTTGG 60.109 55.000 0.00 0.00 0.00 3.77
6284 6928 1.215382 CTCCGTCGATCAGTTGGCA 59.785 57.895 0.00 0.00 0.00 4.92
6287 6931 0.670546 CCGTCGATCAGTTGGCACTT 60.671 55.000 0.00 0.00 0.00 3.16
6300 6944 2.401766 GCACTTCAGACATGCCGGG 61.402 63.158 2.18 0.00 33.06 5.73
6419 7066 4.362476 GGGCAAGCACAAAGGCGG 62.362 66.667 0.00 0.00 39.27 6.13
6442 7098 0.392193 CAGAGGAGAAGCGGCACAAT 60.392 55.000 1.45 0.00 0.00 2.71
6443 7099 0.392193 AGAGGAGAAGCGGCACAATG 60.392 55.000 1.45 0.00 0.00 2.82
6552 7226 1.938016 GCTCCCTGCTTCGTTTCGTTA 60.938 52.381 0.00 0.00 38.95 3.18
6557 7231 2.033492 CCTGCTTCGTTTCGTTACGTTT 60.033 45.455 4.24 0.00 42.01 3.60
6609 7283 7.215085 TGATCTGTGAACTCCATGATATGAAG 58.785 38.462 0.00 0.00 0.00 3.02
6612 7286 8.255111 TCTGTGAACTCCATGATATGAAGTAT 57.745 34.615 0.00 0.00 0.00 2.12
6613 7287 9.367160 TCTGTGAACTCCATGATATGAAGTATA 57.633 33.333 0.00 0.00 0.00 1.47
6664 7338 1.321016 CTCAATTTTGAGCACGCACG 58.679 50.000 7.34 0.00 46.97 5.34
6665 7339 0.660005 TCAATTTTGAGCACGCACGC 60.660 50.000 0.00 0.00 32.50 5.34
6666 7340 1.371635 AATTTTGAGCACGCACGCC 60.372 52.632 0.00 0.00 0.00 5.68
6700 7374 9.502091 TGCAGTACACATATAACTTCTTCTTTT 57.498 29.630 0.00 0.00 0.00 2.27
6794 7469 2.423803 CCATGATGAAGAATGGGGAGCA 60.424 50.000 0.00 0.00 39.82 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 79 6.540189 GCAGGTGATTACTGACAGTGATATTT 59.460 38.462 18.58 0.00 38.20 1.40
84 89 2.005451 CTGCTGCAGGTGATTACTGAC 58.995 52.381 21.71 0.00 38.20 3.51
127 132 3.932710 TGTTAATTGGACTGCTAGAAGCG 59.067 43.478 0.00 0.00 46.26 4.68
157 162 1.819928 TGCTAGCGCTTCCAAAATCA 58.180 45.000 18.68 0.00 36.97 2.57
196 201 8.489489 TCAATTCTCTTTGTAAGATATCAGGCT 58.511 33.333 5.32 0.00 36.82 4.58
211 216 9.699703 GTTGTAGTCTACTTCTCAATTCTCTTT 57.300 33.333 11.28 0.00 0.00 2.52
220 225 6.127703 GCAGGTATGTTGTAGTCTACTTCTCA 60.128 42.308 11.28 5.75 0.00 3.27
229 234 6.743575 AATTTCTGCAGGTATGTTGTAGTC 57.256 37.500 15.13 0.00 31.30 2.59
255 260 2.440539 AAGTGCTCCTCGTGTACTTG 57.559 50.000 0.00 0.00 38.54 3.16
316 328 3.791245 TCTTTTTGCGCATCCTTTTTGT 58.209 36.364 12.75 0.00 0.00 2.83
373 385 9.476202 CACACTTAGTGCTACATGCTATTTATA 57.524 33.333 12.80 0.00 42.15 0.98
375 387 7.770801 CACACTTAGTGCTACATGCTATTTA 57.229 36.000 12.80 0.00 42.15 1.40
376 388 6.668541 CACACTTAGTGCTACATGCTATTT 57.331 37.500 12.80 0.00 42.15 1.40
392 433 7.495901 TCAATTCCAGCAAAATTTCACACTTA 58.504 30.769 0.00 0.00 0.00 2.24
393 434 6.347696 TCAATTCCAGCAAAATTTCACACTT 58.652 32.000 0.00 0.00 0.00 3.16
395 436 5.333568 GCTCAATTCCAGCAAAATTTCACAC 60.334 40.000 0.00 0.00 36.82 3.82
399 440 7.092716 TCTAAGCTCAATTCCAGCAAAATTTC 58.907 34.615 8.33 0.00 39.56 2.17
430 471 6.172630 GTTTGGGTAAATTTGATGCTTCCAT 58.827 36.000 0.00 0.00 0.00 3.41
444 485 3.065648 GCAAGTTCTCACGTTTGGGTAAA 59.934 43.478 0.00 0.00 0.00 2.01
580 621 1.427592 GAAGCGATGCTGAGAGTGGC 61.428 60.000 0.00 0.00 39.62 5.01
587 628 2.735772 GGGGAGGAAGCGATGCTGA 61.736 63.158 0.00 0.00 39.62 4.26
597 638 1.855451 GGGGTTTCAGGGGGAGGAA 60.855 63.158 0.00 0.00 0.00 3.36
881 958 2.279851 CAGTGTCGCCGTCCACAA 60.280 61.111 11.07 0.00 33.99 3.33
901 978 1.805945 GCCTGCGAACTGGTACTCG 60.806 63.158 0.00 0.00 37.23 4.18
902 979 1.448013 GGCCTGCGAACTGGTACTC 60.448 63.158 0.00 0.00 37.23 2.59
903 980 2.663196 GGCCTGCGAACTGGTACT 59.337 61.111 0.00 0.00 37.23 2.73
904 981 2.813908 CGGCCTGCGAACTGGTAC 60.814 66.667 0.00 0.00 37.23 3.34
905 982 4.752879 GCGGCCTGCGAACTGGTA 62.753 66.667 0.00 0.00 37.23 3.25
1322 1416 6.272318 ACACAAATGTAAACCAATGTGTCAG 58.728 36.000 3.70 0.00 46.63 3.51
1338 1432 9.467258 ACATCAGTAAATGAGAAAACACAAATG 57.533 29.630 0.00 0.00 42.53 2.32
1366 1460 3.032459 ACCCCCGCAAAAGAAAAAGTAA 58.968 40.909 0.00 0.00 0.00 2.24
1367 1461 2.668625 ACCCCCGCAAAAGAAAAAGTA 58.331 42.857 0.00 0.00 0.00 2.24
1368 1462 1.491668 ACCCCCGCAAAAGAAAAAGT 58.508 45.000 0.00 0.00 0.00 2.66
1369 1463 2.626266 AGTACCCCCGCAAAAGAAAAAG 59.374 45.455 0.00 0.00 0.00 2.27
1370 1464 2.362717 CAGTACCCCCGCAAAAGAAAAA 59.637 45.455 0.00 0.00 0.00 1.94
1371 1465 1.957877 CAGTACCCCCGCAAAAGAAAA 59.042 47.619 0.00 0.00 0.00 2.29
1372 1466 1.143277 TCAGTACCCCCGCAAAAGAAA 59.857 47.619 0.00 0.00 0.00 2.52
1373 1467 0.766131 TCAGTACCCCCGCAAAAGAA 59.234 50.000 0.00 0.00 0.00 2.52
1374 1468 0.988832 ATCAGTACCCCCGCAAAAGA 59.011 50.000 0.00 0.00 0.00 2.52
1375 1469 1.094785 CATCAGTACCCCCGCAAAAG 58.905 55.000 0.00 0.00 0.00 2.27
1376 1470 0.402504 ACATCAGTACCCCCGCAAAA 59.597 50.000 0.00 0.00 0.00 2.44
1377 1471 0.402504 AACATCAGTACCCCCGCAAA 59.597 50.000 0.00 0.00 0.00 3.68
1378 1472 0.402504 AAACATCAGTACCCCCGCAA 59.597 50.000 0.00 0.00 0.00 4.85
1379 1473 0.402504 AAAACATCAGTACCCCCGCA 59.597 50.000 0.00 0.00 0.00 5.69
1380 1474 2.011947 GTAAAACATCAGTACCCCCGC 58.988 52.381 0.00 0.00 0.00 6.13
1381 1475 3.622166 AGTAAAACATCAGTACCCCCG 57.378 47.619 0.00 0.00 0.00 5.73
1382 1476 5.175388 AGAAGTAAAACATCAGTACCCCC 57.825 43.478 0.00 0.00 0.00 5.40
1383 1477 6.473758 AGAAGAAGTAAAACATCAGTACCCC 58.526 40.000 0.00 0.00 0.00 4.95
1384 1478 9.668497 ATTAGAAGAAGTAAAACATCAGTACCC 57.332 33.333 0.00 0.00 0.00 3.69
1415 1517 6.476706 GCACAAGCCTTTTCATTGGAATATAC 59.523 38.462 0.00 0.00 31.00 1.47
1418 1520 4.527816 AGCACAAGCCTTTTCATTGGAATA 59.472 37.500 0.00 0.00 43.56 1.75
1419 1521 3.325716 AGCACAAGCCTTTTCATTGGAAT 59.674 39.130 0.00 0.00 43.56 3.01
1421 1523 2.297033 GAGCACAAGCCTTTTCATTGGA 59.703 45.455 0.00 0.00 43.56 3.53
1422 1524 2.036217 TGAGCACAAGCCTTTTCATTGG 59.964 45.455 0.00 0.00 43.56 3.16
1434 1545 5.613360 CGTTCTTGTTACTGATGAGCACAAG 60.613 44.000 14.93 14.93 41.33 3.16
1444 1555 9.669353 CTAGTTTACTAACGTTCTTGTTACTGA 57.331 33.333 2.82 0.00 39.31 3.41
1449 1560 9.369904 TGTTTCTAGTTTACTAACGTTCTTGTT 57.630 29.630 2.82 0.00 39.31 2.83
1450 1561 8.931385 TGTTTCTAGTTTACTAACGTTCTTGT 57.069 30.769 2.82 5.39 39.31 3.16
1452 1563 9.591792 AACTGTTTCTAGTTTACTAACGTTCTT 57.408 29.630 2.82 0.00 37.62 2.52
1453 1564 9.591792 AAACTGTTTCTAGTTTACTAACGTTCT 57.408 29.630 2.82 0.00 46.10 3.01
1474 1625 6.598525 TGTTTGCTGATGACGTATTAAACTG 58.401 36.000 0.00 0.00 0.00 3.16
1583 1739 6.375455 CCAATTGGTATAGGCAGATTATGACC 59.625 42.308 16.90 0.00 37.86 4.02
1620 1776 9.436957 CAAAATACCTGTAGAACACTATTCAGT 57.563 33.333 0.00 0.00 34.42 3.41
1667 1824 5.650037 GCTTCCTAGCAAATGGAACACCAT 61.650 45.833 0.00 0.00 45.13 3.55
1709 1866 1.416401 TCGAGGAGTGAATTATGGGCC 59.584 52.381 0.00 0.00 0.00 5.80
1712 1869 3.315470 TCGTCTCGAGGAGTGAATTATGG 59.685 47.826 13.56 0.00 0.00 2.74
1731 1888 5.941555 AGGAATTCCAGTAGATCTTTCGT 57.058 39.130 26.22 0.00 38.89 3.85
1782 1939 5.916883 CAGAACTAGTTTCAACATTTGGCAG 59.083 40.000 10.02 0.00 36.57 4.85
1783 1940 5.592282 TCAGAACTAGTTTCAACATTTGGCA 59.408 36.000 10.02 0.00 36.57 4.92
1831 1988 1.372087 GAAAGGTGCTCGCCATGAGG 61.372 60.000 0.00 0.00 45.38 3.86
1891 2048 5.186256 TGGTTTGATTATACCTGCCTTGA 57.814 39.130 0.00 0.00 35.41 3.02
1893 2050 6.926630 TTTTGGTTTGATTATACCTGCCTT 57.073 33.333 0.00 0.00 35.41 4.35
2015 2184 4.397417 GGACTGGATCTCTTTTGGACATTG 59.603 45.833 0.00 0.00 0.00 2.82
2016 2185 4.043310 TGGACTGGATCTCTTTTGGACATT 59.957 41.667 0.00 0.00 0.00 2.71
2172 2342 7.824289 TGGACTGTTCACTTAGATGAAATTAGG 59.176 37.037 0.00 0.00 40.22 2.69
2208 2378 9.669887 AGCATCATGCCAAAAAGATAAAATAAA 57.330 25.926 5.84 0.00 46.52 1.40
2211 2381 7.332557 TCAGCATCATGCCAAAAAGATAAAAT 58.667 30.769 5.84 0.00 46.52 1.82
2214 2384 5.918426 TCAGCATCATGCCAAAAAGATAA 57.082 34.783 5.84 0.00 46.52 1.75
2216 2386 4.404394 TCATCAGCATCATGCCAAAAAGAT 59.596 37.500 5.84 0.00 46.52 2.40
2217 2387 3.764972 TCATCAGCATCATGCCAAAAAGA 59.235 39.130 5.84 0.00 46.52 2.52
2218 2388 4.118093 TCATCAGCATCATGCCAAAAAG 57.882 40.909 5.84 0.00 46.52 2.27
2323 2495 3.011818 CAAGCACAGCAGGATCAATACA 58.988 45.455 0.00 0.00 0.00 2.29
2328 2500 2.857186 TAACAAGCACAGCAGGATCA 57.143 45.000 0.00 0.00 0.00 2.92
2333 2505 2.358898 ACAACCTTAACAAGCACAGCAG 59.641 45.455 0.00 0.00 0.00 4.24
2367 2539 8.682128 TCATCCACAAAATAAACGAATTAAGC 57.318 30.769 0.00 0.00 0.00 3.09
2484 2656 9.262358 GAAGAAGAAAGAAAGAGTTAGCTTACA 57.738 33.333 5.55 0.00 0.00 2.41
2490 2662 8.495148 GCAGAAGAAGAAGAAAGAAAGAGTTAG 58.505 37.037 0.00 0.00 0.00 2.34
2521 2693 4.917415 CCGGACAATCTAAAGTTTTGCTTG 59.083 41.667 0.00 10.67 37.52 4.01
2526 2698 3.763057 AGCCCGGACAATCTAAAGTTTT 58.237 40.909 0.73 0.00 0.00 2.43
2608 2780 6.708949 TCCAAAGTTAACAATCCAGTGTAGTC 59.291 38.462 8.61 0.00 0.00 2.59
2631 2803 8.613482 GCAATCCAGAGTTTAACTAGTTAATCC 58.387 37.037 24.89 18.66 35.27 3.01
2632 2804 9.384764 AGCAATCCAGAGTTTAACTAGTTAATC 57.615 33.333 24.89 22.94 35.27 1.75
2699 2971 3.787785 GGCAAACCCTCTTTTCGAAAAA 58.212 40.909 22.67 13.22 0.00 1.94
2700 2972 3.446310 GGCAAACCCTCTTTTCGAAAA 57.554 42.857 21.35 21.35 0.00 2.29
2719 2991 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2720 2992 2.541547 TTTCTGATGCAGAGGCCGGG 62.542 60.000 2.18 0.00 41.75 5.73
2721 2993 1.078214 TTTCTGATGCAGAGGCCGG 60.078 57.895 0.00 0.00 41.75 6.13
2722 2994 0.107993 TCTTTCTGATGCAGAGGCCG 60.108 55.000 0.00 0.00 41.75 6.13
2723 2995 1.948145 CATCTTTCTGATGCAGAGGCC 59.052 52.381 0.00 0.00 44.96 5.19
2732 3004 2.158769 TGGCCGTATGCATCTTTCTGAT 60.159 45.455 0.19 0.00 43.89 2.90
2733 3005 1.209261 TGGCCGTATGCATCTTTCTGA 59.791 47.619 0.19 0.00 43.89 3.27
2734 3006 1.667236 TGGCCGTATGCATCTTTCTG 58.333 50.000 0.19 0.00 43.89 3.02
2735 3007 2.645838 ATGGCCGTATGCATCTTTCT 57.354 45.000 0.19 0.00 43.89 2.52
2736 3008 6.683974 ATAATATGGCCGTATGCATCTTTC 57.316 37.500 18.38 0.00 43.89 2.62
2737 3009 6.658816 TCAATAATATGGCCGTATGCATCTTT 59.341 34.615 18.38 4.23 43.89 2.52
2738 3010 6.179756 TCAATAATATGGCCGTATGCATCTT 58.820 36.000 18.38 4.94 43.89 2.40
2739 3011 5.744171 TCAATAATATGGCCGTATGCATCT 58.256 37.500 18.38 4.86 43.89 2.90
2740 3012 6.624352 ATCAATAATATGGCCGTATGCATC 57.376 37.500 18.38 0.00 43.89 3.91
2741 3013 7.255242 GCTTATCAATAATATGGCCGTATGCAT 60.255 37.037 18.38 11.61 43.89 3.96
2742 3014 6.038161 GCTTATCAATAATATGGCCGTATGCA 59.962 38.462 18.38 9.81 43.89 3.96
2743 3015 6.038161 TGCTTATCAATAATATGGCCGTATGC 59.962 38.462 18.38 13.44 40.16 3.14
2744 3016 7.552458 TGCTTATCAATAATATGGCCGTATG 57.448 36.000 18.38 7.57 0.00 2.39
2745 3017 8.574251 TTTGCTTATCAATAATATGGCCGTAT 57.426 30.769 11.98 11.98 34.12 3.06
2746 3018 7.987750 TTTGCTTATCAATAATATGGCCGTA 57.012 32.000 7.25 7.25 34.12 4.02
2747 3019 6.892658 TTTGCTTATCAATAATATGGCCGT 57.107 33.333 1.35 1.35 34.12 5.68
2748 3020 6.808212 CCTTTTGCTTATCAATAATATGGCCG 59.192 38.462 0.00 0.00 34.12 6.13
2749 3021 7.670364 ACCTTTTGCTTATCAATAATATGGCC 58.330 34.615 0.00 0.00 34.12 5.36
2756 3028 9.906660 CTGTTGTAACCTTTTGCTTATCAATAA 57.093 29.630 0.00 0.00 34.12 1.40
2757 3029 8.026607 GCTGTTGTAACCTTTTGCTTATCAATA 58.973 33.333 0.00 0.00 34.12 1.90
2758 3030 6.868339 GCTGTTGTAACCTTTTGCTTATCAAT 59.132 34.615 0.00 0.00 34.12 2.57
2759 3031 6.040391 AGCTGTTGTAACCTTTTGCTTATCAA 59.960 34.615 0.00 0.00 0.00 2.57
2760 3032 5.534654 AGCTGTTGTAACCTTTTGCTTATCA 59.465 36.000 0.00 0.00 0.00 2.15
2761 3033 6.013842 AGCTGTTGTAACCTTTTGCTTATC 57.986 37.500 0.00 0.00 0.00 1.75
2762 3034 7.611855 AGATAGCTGTTGTAACCTTTTGCTTAT 59.388 33.333 0.00 0.00 0.00 1.73
2763 3035 6.940298 AGATAGCTGTTGTAACCTTTTGCTTA 59.060 34.615 0.00 0.00 0.00 3.09
2764 3036 5.770162 AGATAGCTGTTGTAACCTTTTGCTT 59.230 36.000 0.00 0.00 0.00 3.91
2765 3037 5.182001 CAGATAGCTGTTGTAACCTTTTGCT 59.818 40.000 0.00 0.00 37.37 3.91
2766 3038 5.181245 TCAGATAGCTGTTGTAACCTTTTGC 59.819 40.000 8.04 0.00 42.84 3.68
2767 3039 6.801539 TCAGATAGCTGTTGTAACCTTTTG 57.198 37.500 8.04 0.00 42.84 2.44
2768 3040 9.331282 GATATCAGATAGCTGTTGTAACCTTTT 57.669 33.333 8.04 0.00 42.84 2.27
2769 3041 8.709308 AGATATCAGATAGCTGTTGTAACCTTT 58.291 33.333 7.43 0.00 42.84 3.11
2770 3042 8.147058 CAGATATCAGATAGCTGTTGTAACCTT 58.853 37.037 22.70 0.00 42.63 3.50
2771 3043 7.507277 TCAGATATCAGATAGCTGTTGTAACCT 59.493 37.037 27.41 0.00 46.43 3.50
2772 3044 7.596995 GTCAGATATCAGATAGCTGTTGTAACC 59.403 40.741 27.41 10.27 46.43 2.85
2773 3045 7.596995 GGTCAGATATCAGATAGCTGTTGTAAC 59.403 40.741 27.41 19.78 46.43 2.50
2774 3046 7.507277 AGGTCAGATATCAGATAGCTGTTGTAA 59.493 37.037 27.41 11.41 46.43 2.41
2775 3047 7.007116 AGGTCAGATATCAGATAGCTGTTGTA 58.993 38.462 27.41 11.72 46.43 2.41
2776 3048 5.837979 AGGTCAGATATCAGATAGCTGTTGT 59.162 40.000 27.41 14.68 46.43 3.32
2777 3049 6.343716 AGGTCAGATATCAGATAGCTGTTG 57.656 41.667 27.41 10.35 46.43 3.33
2778 3050 8.484214 TTTAGGTCAGATATCAGATAGCTGTT 57.516 34.615 27.41 18.91 46.43 3.16
2779 3051 8.530311 CATTTAGGTCAGATATCAGATAGCTGT 58.470 37.037 27.41 15.74 46.43 4.40
2781 3053 7.179872 TGCATTTAGGTCAGATATCAGATAGCT 59.820 37.037 2.07 2.07 30.27 3.32
2782 3054 7.326454 TGCATTTAGGTCAGATATCAGATAGC 58.674 38.462 5.32 0.00 0.00 2.97
2783 3055 9.315525 CATGCATTTAGGTCAGATATCAGATAG 57.684 37.037 5.32 0.00 0.00 2.08
2784 3056 8.819845 ACATGCATTTAGGTCAGATATCAGATA 58.180 33.333 5.32 0.00 0.00 1.98
2785 3057 7.687388 ACATGCATTTAGGTCAGATATCAGAT 58.313 34.615 5.32 0.00 0.00 2.90
2786 3058 7.071069 ACATGCATTTAGGTCAGATATCAGA 57.929 36.000 5.32 0.00 0.00 3.27
2787 3059 7.741027 AACATGCATTTAGGTCAGATATCAG 57.259 36.000 5.32 0.00 0.00 2.90
2788 3060 7.994911 AGAAACATGCATTTAGGTCAGATATCA 59.005 33.333 5.32 0.00 0.00 2.15
2789 3061 8.388484 AGAAACATGCATTTAGGTCAGATATC 57.612 34.615 0.00 0.00 0.00 1.63
2790 3062 8.757982 AAGAAACATGCATTTAGGTCAGATAT 57.242 30.769 0.00 0.00 0.00 1.63
2791 3063 8.579850 AAAGAAACATGCATTTAGGTCAGATA 57.420 30.769 0.00 0.00 0.00 1.98
2792 3064 7.472334 AAAGAAACATGCATTTAGGTCAGAT 57.528 32.000 0.00 0.00 0.00 2.90
2793 3065 6.899393 AAAGAAACATGCATTTAGGTCAGA 57.101 33.333 0.00 0.00 0.00 3.27
2794 3066 6.306356 CGAAAAGAAACATGCATTTAGGTCAG 59.694 38.462 0.00 0.00 0.00 3.51
2795 3067 6.148948 CGAAAAGAAACATGCATTTAGGTCA 58.851 36.000 0.00 0.00 0.00 4.02
2796 3068 5.060940 GCGAAAAGAAACATGCATTTAGGTC 59.939 40.000 0.00 0.00 0.00 3.85
2797 3069 4.923281 GCGAAAAGAAACATGCATTTAGGT 59.077 37.500 0.00 0.00 0.00 3.08
2798 3070 4.922692 TGCGAAAAGAAACATGCATTTAGG 59.077 37.500 0.00 0.00 0.00 2.69
2799 3071 5.630680 ACTGCGAAAAGAAACATGCATTTAG 59.369 36.000 0.00 0.00 0.00 1.85
2800 3072 5.527951 ACTGCGAAAAGAAACATGCATTTA 58.472 33.333 0.00 0.00 0.00 1.40
2801 3073 4.370917 ACTGCGAAAAGAAACATGCATTT 58.629 34.783 0.00 0.00 0.00 2.32
2913 3190 6.543465 TCATGGTCAGTGAATCATAAACATCC 59.457 38.462 9.16 0.00 0.00 3.51
2915 3192 7.148018 GGTTCATGGTCAGTGAATCATAAACAT 60.148 37.037 18.13 0.00 36.83 2.71
2926 3203 2.106338 ACACATGGTTCATGGTCAGTGA 59.894 45.455 11.85 0.00 45.16 3.41
3011 3324 9.897349 CGTTTTAGTCCGAGAATATTTAGTTTC 57.103 33.333 0.00 0.00 0.00 2.78
3021 3334 3.449737 TGGATCCGTTTTAGTCCGAGAAT 59.550 43.478 7.39 0.00 33.39 2.40
3026 3339 3.454371 AGATGGATCCGTTTTAGTCCG 57.546 47.619 8.18 0.00 33.39 4.79
3103 3417 5.464389 GCAATTCATAAAAATGCCTAGCTGG 59.536 40.000 0.00 0.00 39.35 4.85
3137 3451 4.929479 ACCTAGGGCATACATTGTTGAAA 58.071 39.130 14.81 0.00 0.00 2.69
3147 3461 4.675038 AGTGTAGGATACCTAGGGCATAC 58.325 47.826 14.81 13.81 42.12 2.39
3281 3595 2.625087 CCCCCAAGATGGAAGCAATTCT 60.625 50.000 0.00 0.00 40.96 2.40
3342 3656 3.490348 AGGTTGCACATGGATATTAGCC 58.510 45.455 0.00 0.00 0.00 3.93
3423 3739 0.749649 AGGACCGCATTGCACAAAAA 59.250 45.000 9.69 0.00 0.00 1.94
3436 3752 4.455533 TGATTTGTTGAGATTTCAGGACCG 59.544 41.667 0.00 0.00 34.15 4.79
3458 3776 0.321671 ACCATCCGACTTCACCTGTG 59.678 55.000 0.00 0.00 0.00 3.66
3546 3864 5.122512 TCTAGAGGAAAGAACTCACAACG 57.877 43.478 0.00 0.00 37.43 4.10
3584 3904 6.917477 CCAGATCAAACGTTGAATTCAAGAAA 59.083 34.615 21.05 4.86 43.95 2.52
3589 3909 5.049474 CAGTCCAGATCAAACGTTGAATTCA 60.049 40.000 3.38 3.38 43.95 2.57
3612 3932 9.559732 CAGAATATATCAATTTCAGGGTACACA 57.440 33.333 0.00 0.00 0.00 3.72
3658 3978 3.131933 TGACTCAGCTTCTCTATTCTGCC 59.868 47.826 0.00 0.00 0.00 4.85
3818 4145 2.097629 CAGGACAGATGCTTCATTGCAG 59.902 50.000 2.07 0.00 46.71 4.41
3832 4159 2.329678 CTAGCCGCTCGACAGGACAG 62.330 65.000 0.00 0.00 0.00 3.51
3833 4160 2.360726 TAGCCGCTCGACAGGACA 60.361 61.111 0.00 0.00 0.00 4.02
3834 4161 2.409651 CTAGCCGCTCGACAGGAC 59.590 66.667 0.00 0.00 0.00 3.85
3835 4162 3.518998 GCTAGCCGCTCGACAGGA 61.519 66.667 2.29 0.00 35.14 3.86
3836 4163 4.914420 CGCTAGCCGCTCGACAGG 62.914 72.222 9.66 0.00 36.13 4.00
3837 4164 3.798639 CTCGCTAGCCGCTCGACAG 62.799 68.421 9.66 0.00 36.73 3.51
3838 4165 3.877357 CTCGCTAGCCGCTCGACA 61.877 66.667 9.66 0.00 36.73 4.35
3839 4166 4.615834 CCTCGCTAGCCGCTCGAC 62.616 72.222 9.66 0.00 36.73 4.20
3925 4373 2.188818 AGGAAGATGAAGGAGGAGGG 57.811 55.000 0.00 0.00 0.00 4.30
4077 4538 3.431725 CCGAGGCCCGCAAAACTC 61.432 66.667 0.00 0.00 36.84 3.01
4227 4694 3.454587 AAAGAGCCACACCGTCGCA 62.455 57.895 0.00 0.00 0.00 5.10
4235 4702 0.179020 CTCACCACCAAAGAGCCACA 60.179 55.000 0.00 0.00 0.00 4.17
4243 4710 0.184933 CCCCTTGTCTCACCACCAAA 59.815 55.000 0.00 0.00 0.00 3.28
4372 4839 1.460689 AGGGAACAACCTCCACCGA 60.461 57.895 0.00 0.00 35.43 4.69
4452 4949 1.152984 CACTGAGGCCACCAACACA 60.153 57.895 5.01 0.00 0.00 3.72
4481 4978 0.988832 ACCACGGATACCACACCATT 59.011 50.000 0.00 0.00 0.00 3.16
4626 5123 3.003173 TCAGGAGGGTCCCGCAAG 61.003 66.667 14.31 5.15 37.19 4.01
4742 5239 2.420022 GCGTACCAAGCAACATCTTCAT 59.580 45.455 0.00 0.00 34.19 2.57
4870 5367 8.873830 CCCAAAAGAAAAAGAAGAGAAAGAAAC 58.126 33.333 0.00 0.00 0.00 2.78
4970 5470 0.171231 GGACAGATGCGAAAAAGGGC 59.829 55.000 0.00 0.00 0.00 5.19
4981 5481 3.261580 TGCATTTACGACAGGACAGATG 58.738 45.455 0.00 0.00 0.00 2.90
4982 5482 3.610040 TGCATTTACGACAGGACAGAT 57.390 42.857 0.00 0.00 0.00 2.90
4983 5483 3.394674 TTGCATTTACGACAGGACAGA 57.605 42.857 0.00 0.00 0.00 3.41
4984 5484 3.728864 GCATTGCATTTACGACAGGACAG 60.729 47.826 3.15 0.00 0.00 3.51
5022 5525 4.082026 GGATTGGCCATAAATCATACTGCC 60.082 45.833 6.09 0.00 36.03 4.85
5038 5541 3.258123 TCTTTTGCAGGTTAAGGATTGGC 59.742 43.478 0.00 0.00 0.00 4.52
5088 5591 1.210478 TCTATGCACCTTGGAGGCTTC 59.790 52.381 0.00 0.00 39.63 3.86
5091 5594 0.817229 GCTCTATGCACCTTGGAGGC 60.817 60.000 0.00 0.00 39.63 4.70
5136 5639 1.683441 GTTTCCCCACGAGGTCCAT 59.317 57.895 0.00 0.00 0.00 3.41
5277 5782 7.956420 TTACAGAAAACACACGAGACATAAT 57.044 32.000 0.00 0.00 0.00 1.28
5371 5882 9.053840 TGATACGGTCAGTTAGTAATAAGAGAG 57.946 37.037 0.00 0.00 31.80 3.20
5381 5892 3.031736 AGGCATGATACGGTCAGTTAGT 58.968 45.455 0.00 0.00 40.92 2.24
5382 5893 3.735237 AGGCATGATACGGTCAGTTAG 57.265 47.619 0.00 0.00 40.92 2.34
5383 5894 3.196901 ACAAGGCATGATACGGTCAGTTA 59.803 43.478 0.00 0.00 40.92 2.24
5424 5937 0.111061 AATCCAGCAGCAGGTGTTCA 59.889 50.000 7.56 0.00 41.60 3.18
5495 6019 1.529226 CAACTTGCCATTCCGTACCA 58.471 50.000 0.00 0.00 0.00 3.25
5497 6021 0.170339 GCCAACTTGCCATTCCGTAC 59.830 55.000 0.00 0.00 0.00 3.67
5502 6026 3.317150 GTTAGTTGCCAACTTGCCATTC 58.683 45.455 16.40 0.00 42.81 2.67
5506 6030 0.948678 TCGTTAGTTGCCAACTTGCC 59.051 50.000 16.40 3.31 42.81 4.52
5508 6032 2.032030 CACCTCGTTAGTTGCCAACTTG 60.032 50.000 16.40 6.62 42.81 3.16
5511 6035 0.237498 GCACCTCGTTAGTTGCCAAC 59.763 55.000 0.00 0.00 0.00 3.77
5557 6084 7.816995 CAGTCAAGCTTAGAGACTAGTTCAAAT 59.183 37.037 15.36 0.00 40.42 2.32
5566 6093 4.219725 GTCCTTCAGTCAAGCTTAGAGACT 59.780 45.833 11.16 11.16 42.97 3.24
5567 6094 4.490743 GTCCTTCAGTCAAGCTTAGAGAC 58.509 47.826 0.00 2.61 0.00 3.36
5603 6130 1.647084 GTTCTGTGGTGAACGGCAC 59.353 57.895 2.44 2.44 46.98 5.01
5612 6139 0.249398 GCGGGATACAGTTCTGTGGT 59.751 55.000 14.69 4.42 39.74 4.16
5615 6142 0.108138 GCAGCGGGATACAGTTCTGT 60.108 55.000 10.33 10.33 39.74 3.41
5700 6242 3.351794 AGATCGACAGACCAGTCACTA 57.648 47.619 0.00 0.00 38.43 2.74
5702 6244 3.190744 TGTTAGATCGACAGACCAGTCAC 59.809 47.826 0.00 0.00 38.43 3.67
5703 6245 3.418047 TGTTAGATCGACAGACCAGTCA 58.582 45.455 0.00 0.00 38.43 3.41
5704 6246 4.096532 TCATGTTAGATCGACAGACCAGTC 59.903 45.833 10.11 0.00 35.19 3.51
5705 6247 4.017126 TCATGTTAGATCGACAGACCAGT 58.983 43.478 10.11 0.00 0.00 4.00
5706 6248 4.639135 TCATGTTAGATCGACAGACCAG 57.361 45.455 10.11 0.64 0.00 4.00
5707 6249 4.381612 GGTTCATGTTAGATCGACAGACCA 60.382 45.833 18.91 0.00 32.85 4.02
5709 6251 4.113354 GGGTTCATGTTAGATCGACAGAC 58.887 47.826 10.11 8.47 0.00 3.51
5711 6253 4.115516 CAGGGTTCATGTTAGATCGACAG 58.884 47.826 10.11 4.24 0.00 3.51
5712 6254 3.118775 CCAGGGTTCATGTTAGATCGACA 60.119 47.826 7.30 7.30 0.00 4.35
5713 6255 3.118738 ACCAGGGTTCATGTTAGATCGAC 60.119 47.826 0.00 0.00 0.00 4.20
5714 6256 3.104512 ACCAGGGTTCATGTTAGATCGA 58.895 45.455 0.00 0.00 0.00 3.59
5715 6257 3.458189 GACCAGGGTTCATGTTAGATCG 58.542 50.000 0.00 0.00 0.00 3.69
5729 6271 1.341383 CCCTTCAAGAATGGACCAGGG 60.341 57.143 0.00 0.00 33.75 4.45
5764 6306 3.614092 TGCTCCAAGAGGATGAACAATC 58.386 45.455 0.00 0.00 44.70 2.67
5826 6368 2.672651 CACAAGGATGCGGGCACA 60.673 61.111 0.00 0.00 0.00 4.57
5827 6369 2.268076 AACACAAGGATGCGGGCAC 61.268 57.895 0.00 0.00 0.00 5.01
5921 6504 2.191354 CTACGTGGTTCTCGTCGGCA 62.191 60.000 0.00 0.00 41.72 5.69
5922 6505 1.513586 CTACGTGGTTCTCGTCGGC 60.514 63.158 0.00 0.00 41.72 5.54
5923 6506 1.136147 CCTACGTGGTTCTCGTCGG 59.864 63.158 0.00 0.00 41.72 4.79
5989 6589 1.606889 GACCTCACCTCCCTGTCGT 60.607 63.158 0.00 0.00 0.00 4.34
6001 6601 2.282674 ACACGTAGCCGGACCTCA 60.283 61.111 5.05 0.00 38.78 3.86
6021 6627 2.358247 CTACCCACACGCACACCC 60.358 66.667 0.00 0.00 0.00 4.61
6022 6628 1.959226 CACTACCCACACGCACACC 60.959 63.158 0.00 0.00 0.00 4.16
6023 6629 1.959226 CCACTACCCACACGCACAC 60.959 63.158 0.00 0.00 0.00 3.82
6024 6630 2.423874 CCACTACCCACACGCACA 59.576 61.111 0.00 0.00 0.00 4.57
6025 6631 2.358247 CCCACTACCCACACGCAC 60.358 66.667 0.00 0.00 0.00 5.34
6026 6632 3.632080 CCCCACTACCCACACGCA 61.632 66.667 0.00 0.00 0.00 5.24
6143 6753 4.382320 GCGGCCACGGAGTTGGTA 62.382 66.667 2.24 0.00 41.61 3.25
6146 6789 4.728102 TACGCGGCCACGGAGTTG 62.728 66.667 18.84 0.00 41.61 3.16
6175 6818 0.518559 GAAACGAGCGGCGAAATGAC 60.519 55.000 12.98 0.00 44.57 3.06
6176 6819 0.946700 TGAAACGAGCGGCGAAATGA 60.947 50.000 12.98 0.00 44.57 2.57
6177 6820 0.110419 TTGAAACGAGCGGCGAAATG 60.110 50.000 12.98 0.00 44.57 2.32
6178 6821 0.589223 TTTGAAACGAGCGGCGAAAT 59.411 45.000 12.98 0.00 44.57 2.17
6186 6829 3.426292 GCTAATGAGGGTTTGAAACGAGC 60.426 47.826 1.53 0.00 0.00 5.03
6198 6841 2.663188 GCGAGCGGCTAATGAGGG 60.663 66.667 0.60 0.00 39.11 4.30
6266 6910 1.078759 GTGCCAACTGATCGACGGAG 61.079 60.000 0.00 0.00 0.00 4.63
6270 6914 1.728971 CTGAAGTGCCAACTGATCGAC 59.271 52.381 0.00 0.00 36.51 4.20
6282 6926 2.401766 CCCGGCATGTCTGAAGTGC 61.402 63.158 0.00 6.91 38.12 4.40
6284 6928 2.045926 GCCCGGCATGTCTGAAGT 60.046 61.111 3.91 0.00 0.00 3.01
6287 6931 4.451150 GACGCCCGGCATGTCTGA 62.451 66.667 10.77 0.00 0.00 3.27
6300 6944 1.153997 GGAGACTCCGACTTGACGC 60.154 63.158 5.55 0.00 0.00 5.19
6375 7019 0.969409 GGCTCTTGCTGCCTTGGAAT 60.969 55.000 0.00 0.00 46.38 3.01
6376 7020 1.604593 GGCTCTTGCTGCCTTGGAA 60.605 57.895 0.00 0.00 46.38 3.53
6384 7028 4.112341 GCGCCTTGGCTCTTGCTG 62.112 66.667 10.12 0.00 39.59 4.41
6402 7049 4.362476 CCGCCTTTGTGCTTGCCC 62.362 66.667 0.00 0.00 0.00 5.36
6403 7050 2.753931 CTTCCGCCTTTGTGCTTGCC 62.754 60.000 0.00 0.00 0.00 4.52
6405 7052 1.372128 GCTTCCGCCTTTGTGCTTG 60.372 57.895 0.00 0.00 0.00 4.01
6406 7053 1.799258 CTGCTTCCGCCTTTGTGCTT 61.799 55.000 0.00 0.00 34.43 3.91
6407 7054 2.203337 TGCTTCCGCCTTTGTGCT 60.203 55.556 0.00 0.00 34.43 4.40
6408 7055 2.192608 CTCTGCTTCCGCCTTTGTGC 62.193 60.000 0.00 0.00 34.43 4.57
6409 7056 1.580845 CCTCTGCTTCCGCCTTTGTG 61.581 60.000 0.00 0.00 34.43 3.33
6411 7058 1.003355 TCCTCTGCTTCCGCCTTTG 60.003 57.895 0.00 0.00 34.43 2.77
6412 7059 1.194781 TCTCCTCTGCTTCCGCCTTT 61.195 55.000 0.00 0.00 34.43 3.11
6419 7066 1.813337 GCCGCTTCTCCTCTGCTTC 60.813 63.158 0.00 0.00 0.00 3.86
6552 7226 2.299297 CTCTAGGGAACAGTGGAAACGT 59.701 50.000 0.00 0.00 0.00 3.99
6557 7231 1.616187 CGGACTCTAGGGAACAGTGGA 60.616 57.143 0.00 0.00 0.00 4.02
6613 7287 9.618890 ACATGCTTGTGATAACTGATAAAGTAT 57.381 29.630 4.14 0.00 34.21 2.12
6615 7289 7.928307 ACATGCTTGTGATAACTGATAAAGT 57.072 32.000 4.14 0.00 36.02 2.66
6661 7335 2.520465 TACTGCACCCTCATGGCGTG 62.520 60.000 0.00 0.00 37.83 5.34
6662 7336 2.290287 TACTGCACCCTCATGGCGT 61.290 57.895 0.00 0.00 37.83 5.68
6663 7337 1.815421 GTACTGCACCCTCATGGCG 60.815 63.158 0.00 0.00 37.83 5.69
6664 7338 1.026718 GTGTACTGCACCCTCATGGC 61.027 60.000 0.00 0.00 42.10 4.40
6665 7339 3.159298 GTGTACTGCACCCTCATGG 57.841 57.895 0.00 0.00 42.10 3.66
6707 7381 9.265901 GCATCATCAGAAGTTATATGTGTAAGT 57.734 33.333 0.00 0.00 0.00 2.24
6708 7382 9.264719 TGCATCATCAGAAGTTATATGTGTAAG 57.735 33.333 0.00 0.00 0.00 2.34
6709 7383 9.783081 ATGCATCATCAGAAGTTATATGTGTAA 57.217 29.630 0.00 0.00 0.00 2.41
6710 7384 9.211485 CATGCATCATCAGAAGTTATATGTGTA 57.789 33.333 0.00 0.00 0.00 2.90
6711 7385 7.174426 CCATGCATCATCAGAAGTTATATGTGT 59.826 37.037 0.00 0.00 0.00 3.72
6712 7386 7.174426 ACCATGCATCATCAGAAGTTATATGTG 59.826 37.037 0.00 0.00 0.00 3.21
6713 7387 7.229308 ACCATGCATCATCAGAAGTTATATGT 58.771 34.615 0.00 0.00 0.00 2.29
6714 7388 7.683437 ACCATGCATCATCAGAAGTTATATG 57.317 36.000 0.00 0.00 0.00 1.78
6715 7389 8.377799 TGTACCATGCATCATCAGAAGTTATAT 58.622 33.333 0.00 0.00 0.00 0.86
6716 7390 7.734942 TGTACCATGCATCATCAGAAGTTATA 58.265 34.615 0.00 0.00 0.00 0.98
6717 7391 6.594744 TGTACCATGCATCATCAGAAGTTAT 58.405 36.000 0.00 0.00 0.00 1.89
6718 7392 5.988287 TGTACCATGCATCATCAGAAGTTA 58.012 37.500 0.00 0.00 0.00 2.24
6719 7393 4.847198 TGTACCATGCATCATCAGAAGTT 58.153 39.130 0.00 0.00 0.00 2.66
6720 7394 4.492494 TGTACCATGCATCATCAGAAGT 57.508 40.909 0.00 0.00 0.00 3.01
6721 7395 6.709397 AGTTATGTACCATGCATCATCAGAAG 59.291 38.462 0.00 0.00 0.00 2.85
6722 7396 6.594744 AGTTATGTACCATGCATCATCAGAA 58.405 36.000 0.00 0.00 0.00 3.02
6723 7397 6.178607 AGTTATGTACCATGCATCATCAGA 57.821 37.500 0.00 0.00 0.00 3.27
6724 7398 6.709397 AGAAGTTATGTACCATGCATCATCAG 59.291 38.462 0.00 0.00 0.00 2.90
6725 7399 6.484308 CAGAAGTTATGTACCATGCATCATCA 59.516 38.462 0.00 0.00 0.00 3.07
6726 7400 6.484643 ACAGAAGTTATGTACCATGCATCATC 59.515 38.462 0.16 0.00 0.00 2.92
6727 7401 6.359804 ACAGAAGTTATGTACCATGCATCAT 58.640 36.000 0.16 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.