Multiple sequence alignment - TraesCS4A01G039900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G039900 chr4A 100.000 2916 0 0 1 2916 32652568 32655483 0.000000e+00 5385.0
1 TraesCS4A01G039900 chr4D 88.150 1941 135 39 994 2885 431232046 431233940 0.000000e+00 2222.0
2 TraesCS4A01G039900 chr4D 86.548 394 26 13 463 843 431231436 431231815 2.700000e-110 409.0
3 TraesCS4A01G039900 chr4D 93.827 162 7 1 833 994 431231844 431232002 1.040000e-59 241.0
4 TraesCS4A01G039900 chr4B 87.584 1047 65 27 1463 2484 529677254 529678260 0.000000e+00 1153.0
5 TraesCS4A01G039900 chr4B 86.196 623 40 23 838 1420 529676547 529677163 1.470000e-177 632.0
6 TraesCS4A01G039900 chr4B 80.000 420 36 27 453 838 529676103 529676508 1.720000e-67 267.0
7 TraesCS4A01G039900 chr4B 85.408 233 15 9 2688 2916 529678481 529678698 1.050000e-54 224.0
8 TraesCS4A01G039900 chr4B 85.586 111 16 0 2518 2628 115527070 115527180 1.840000e-22 117.0
9 TraesCS4A01G039900 chr4B 93.443 61 4 0 453 513 529653174 529653234 1.110000e-14 91.6
10 TraesCS4A01G039900 chrUn 89.706 68 6 1 278 345 65665374 65665440 5.180000e-13 86.1
11 TraesCS4A01G039900 chr2D 90.196 51 5 0 1039 1089 345519514 345519464 1.880000e-07 67.6
12 TraesCS4A01G039900 chr2B 90.196 51 5 0 1039 1089 411001501 411001451 1.880000e-07 67.6
13 TraesCS4A01G039900 chr2A 88.889 54 6 0 1036 1089 458670108 458670161 1.880000e-07 67.6
14 TraesCS4A01G039900 chr3A 100.000 28 0 0 277 304 602223888 602223861 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G039900 chr4A 32652568 32655483 2915 False 5385.000000 5385 100.000000 1 2916 1 chr4A.!!$F1 2915
1 TraesCS4A01G039900 chr4D 431231436 431233940 2504 False 957.333333 2222 89.508333 463 2885 3 chr4D.!!$F1 2422
2 TraesCS4A01G039900 chr4B 529676103 529678698 2595 False 569.000000 1153 84.797000 453 2916 4 chr4B.!!$F3 2463

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 418 0.031178 ACACTTAACGAAGTCGCGGT 59.969 50.0 6.13 0.00 45.00 5.68 F
998 1094 0.387367 ATTAGATAGCGAGCGCACGG 60.387 55.0 27.65 10.49 44.88 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 1981 0.108138 GGGAGAATGGTCACCTGTCG 60.108 60.0 0.0 0.0 35.03 4.35 R
2887 3304 0.107081 GATCTCTCTCCTCCCGTCGA 59.893 60.0 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.422303 TCACGTTGCATCGCAGCC 61.422 61.111 16.76 0.00 40.61 4.85
18 19 3.425713 CACGTTGCATCGCAGCCT 61.426 61.111 16.76 0.00 40.61 4.58
19 20 2.100031 CACGTTGCATCGCAGCCTA 61.100 57.895 16.76 0.00 40.61 3.93
20 21 1.153369 ACGTTGCATCGCAGCCTAT 60.153 52.632 16.76 0.00 40.61 2.57
21 22 1.277739 CGTTGCATCGCAGCCTATG 59.722 57.895 3.94 0.00 40.61 2.23
22 23 1.650912 GTTGCATCGCAGCCTATGG 59.349 57.895 4.89 0.00 40.61 2.74
23 24 1.097547 GTTGCATCGCAGCCTATGGT 61.098 55.000 4.89 0.00 40.61 3.55
24 25 1.096967 TTGCATCGCAGCCTATGGTG 61.097 55.000 4.89 0.00 40.61 4.17
25 26 1.524621 GCATCGCAGCCTATGGTGT 60.525 57.895 4.89 0.00 42.04 4.16
26 27 1.502163 GCATCGCAGCCTATGGTGTC 61.502 60.000 4.89 0.00 42.04 3.67
27 28 0.105593 CATCGCAGCCTATGGTGTCT 59.894 55.000 0.00 0.00 42.04 3.41
28 29 0.390860 ATCGCAGCCTATGGTGTCTC 59.609 55.000 0.00 0.00 42.04 3.36
29 30 1.227380 CGCAGCCTATGGTGTCTCC 60.227 63.158 0.00 0.00 42.04 3.71
30 31 1.680522 CGCAGCCTATGGTGTCTCCT 61.681 60.000 0.00 0.00 42.04 3.69
31 32 0.543749 GCAGCCTATGGTGTCTCCTT 59.456 55.000 0.00 0.00 42.04 3.36
32 33 1.474143 GCAGCCTATGGTGTCTCCTTC 60.474 57.143 0.00 0.00 42.04 3.46
33 34 1.833630 CAGCCTATGGTGTCTCCTTCA 59.166 52.381 0.00 0.00 35.25 3.02
34 35 2.114616 AGCCTATGGTGTCTCCTTCAG 58.885 52.381 0.00 0.00 37.07 3.02
35 36 1.834263 GCCTATGGTGTCTCCTTCAGT 59.166 52.381 0.00 0.00 37.07 3.41
36 37 3.031736 GCCTATGGTGTCTCCTTCAGTA 58.968 50.000 0.00 0.00 37.07 2.74
37 38 3.643792 GCCTATGGTGTCTCCTTCAGTAT 59.356 47.826 0.00 0.00 37.07 2.12
38 39 4.262249 GCCTATGGTGTCTCCTTCAGTATC 60.262 50.000 0.00 0.00 37.07 2.24
39 40 4.022762 CCTATGGTGTCTCCTTCAGTATCG 60.023 50.000 0.00 0.00 37.07 2.92
40 41 3.081710 TGGTGTCTCCTTCAGTATCGA 57.918 47.619 0.00 0.00 37.07 3.59
41 42 3.427573 TGGTGTCTCCTTCAGTATCGAA 58.572 45.455 0.00 0.00 37.07 3.71
42 43 3.830178 TGGTGTCTCCTTCAGTATCGAAA 59.170 43.478 0.00 0.00 37.07 3.46
43 44 4.174762 GGTGTCTCCTTCAGTATCGAAAC 58.825 47.826 0.00 0.00 0.00 2.78
44 45 3.852536 GTGTCTCCTTCAGTATCGAAACG 59.147 47.826 0.00 0.00 0.00 3.60
45 46 2.853003 GTCTCCTTCAGTATCGAAACGC 59.147 50.000 0.00 0.00 0.00 4.84
46 47 2.159282 TCTCCTTCAGTATCGAAACGCC 60.159 50.000 0.00 0.00 0.00 5.68
47 48 1.546923 TCCTTCAGTATCGAAACGCCA 59.453 47.619 0.00 0.00 0.00 5.69
48 49 2.167693 TCCTTCAGTATCGAAACGCCAT 59.832 45.455 0.00 0.00 0.00 4.40
49 50 2.285220 CCTTCAGTATCGAAACGCCATG 59.715 50.000 0.00 0.00 0.00 3.66
50 51 1.934589 TCAGTATCGAAACGCCATGG 58.065 50.000 7.63 7.63 0.00 3.66
51 52 1.206132 TCAGTATCGAAACGCCATGGT 59.794 47.619 14.67 0.00 0.00 3.55
52 53 1.327460 CAGTATCGAAACGCCATGGTG 59.673 52.381 23.88 23.88 0.00 4.17
53 54 1.066430 AGTATCGAAACGCCATGGTGT 60.066 47.619 25.40 25.40 40.97 4.16
54 55 2.166870 AGTATCGAAACGCCATGGTGTA 59.833 45.455 30.46 15.93 37.94 2.90
55 56 1.365699 ATCGAAACGCCATGGTGTAC 58.634 50.000 30.46 23.87 37.94 2.90
56 57 1.009903 TCGAAACGCCATGGTGTACG 61.010 55.000 32.82 32.82 37.94 3.67
57 58 1.009903 CGAAACGCCATGGTGTACGA 61.010 55.000 34.05 0.00 39.14 3.43
58 59 1.365699 GAAACGCCATGGTGTACGAT 58.634 50.000 30.46 16.98 37.94 3.73
59 60 2.542597 GAAACGCCATGGTGTACGATA 58.457 47.619 30.46 0.00 37.94 2.92
60 61 2.902705 AACGCCATGGTGTACGATAT 57.097 45.000 30.46 11.78 37.94 1.63
61 62 2.902705 ACGCCATGGTGTACGATATT 57.097 45.000 29.35 1.65 37.05 1.28
62 63 3.188159 ACGCCATGGTGTACGATATTT 57.812 42.857 29.35 0.84 37.05 1.40
63 64 3.537580 ACGCCATGGTGTACGATATTTT 58.462 40.909 29.35 0.02 37.05 1.82
64 65 3.942748 ACGCCATGGTGTACGATATTTTT 59.057 39.130 29.35 0.00 37.05 1.94
65 66 5.117584 ACGCCATGGTGTACGATATTTTTA 58.882 37.500 29.35 0.00 37.05 1.52
66 67 5.235616 ACGCCATGGTGTACGATATTTTTAG 59.764 40.000 29.35 0.00 37.05 1.85
67 68 5.464057 CGCCATGGTGTACGATATTTTTAGA 59.536 40.000 17.59 0.00 0.00 2.10
68 69 6.563381 CGCCATGGTGTACGATATTTTTAGAC 60.563 42.308 17.59 0.00 0.00 2.59
69 70 6.259167 GCCATGGTGTACGATATTTTTAGACA 59.741 38.462 14.67 0.00 0.00 3.41
70 71 7.518370 GCCATGGTGTACGATATTTTTAGACAG 60.518 40.741 14.67 0.00 0.00 3.51
71 72 7.042051 CCATGGTGTACGATATTTTTAGACAGG 60.042 40.741 2.57 0.00 0.00 4.00
72 73 6.342906 TGGTGTACGATATTTTTAGACAGGG 58.657 40.000 0.00 0.00 0.00 4.45
73 74 6.070653 TGGTGTACGATATTTTTAGACAGGGT 60.071 38.462 0.00 0.00 0.00 4.34
74 75 6.257193 GGTGTACGATATTTTTAGACAGGGTG 59.743 42.308 0.00 0.00 0.00 4.61
75 76 7.037438 GTGTACGATATTTTTAGACAGGGTGA 58.963 38.462 0.00 0.00 0.00 4.02
76 77 7.546667 GTGTACGATATTTTTAGACAGGGTGAA 59.453 37.037 0.00 0.00 0.00 3.18
77 78 8.095792 TGTACGATATTTTTAGACAGGGTGAAA 58.904 33.333 0.00 0.00 0.00 2.69
78 79 7.373778 ACGATATTTTTAGACAGGGTGAAAC 57.626 36.000 0.00 0.00 0.00 2.78
79 80 6.091713 ACGATATTTTTAGACAGGGTGAAACG 59.908 38.462 0.00 0.00 38.12 3.60
90 91 2.622064 GGTGAAACGCTATGATCCCT 57.378 50.000 0.00 0.00 38.12 4.20
91 92 2.213499 GGTGAAACGCTATGATCCCTG 58.787 52.381 0.00 0.00 38.12 4.45
92 93 2.213499 GTGAAACGCTATGATCCCTGG 58.787 52.381 0.00 0.00 0.00 4.45
93 94 1.230324 GAAACGCTATGATCCCTGGC 58.770 55.000 0.00 0.00 0.00 4.85
95 96 2.737180 CGCTATGATCCCTGGCGT 59.263 61.111 12.89 0.00 40.78 5.68
96 97 1.069765 CGCTATGATCCCTGGCGTT 59.930 57.895 12.89 0.00 40.78 4.84
97 98 0.532862 CGCTATGATCCCTGGCGTTT 60.533 55.000 12.89 0.00 40.78 3.60
98 99 1.230324 GCTATGATCCCTGGCGTTTC 58.770 55.000 0.00 0.00 0.00 2.78
99 100 1.202698 GCTATGATCCCTGGCGTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
100 101 2.746472 GCTATGATCCCTGGCGTTTCTT 60.746 50.000 0.00 0.00 0.00 2.52
101 102 3.494398 GCTATGATCCCTGGCGTTTCTTA 60.494 47.826 0.00 0.00 0.00 2.10
102 103 3.864789 ATGATCCCTGGCGTTTCTTAT 57.135 42.857 0.00 0.00 0.00 1.73
103 104 2.917933 TGATCCCTGGCGTTTCTTATG 58.082 47.619 0.00 0.00 0.00 1.90
104 105 2.222027 GATCCCTGGCGTTTCTTATGG 58.778 52.381 0.00 0.00 0.00 2.74
105 106 0.988832 TCCCTGGCGTTTCTTATGGT 59.011 50.000 0.00 0.00 0.00 3.55
106 107 1.094785 CCCTGGCGTTTCTTATGGTG 58.905 55.000 0.00 0.00 0.00 4.17
107 108 0.451783 CCTGGCGTTTCTTATGGTGC 59.548 55.000 0.00 0.00 0.00 5.01
108 109 1.164411 CTGGCGTTTCTTATGGTGCA 58.836 50.000 0.00 0.00 0.00 4.57
109 110 1.539388 CTGGCGTTTCTTATGGTGCAA 59.461 47.619 0.00 0.00 0.00 4.08
110 111 1.268352 TGGCGTTTCTTATGGTGCAAC 59.732 47.619 0.00 0.00 0.00 4.17
111 112 1.602191 GCGTTTCTTATGGTGCAACG 58.398 50.000 0.00 0.00 42.42 4.10
112 113 1.069500 GCGTTTCTTATGGTGCAACGT 60.069 47.619 0.20 0.20 41.74 3.99
113 114 2.603652 GCGTTTCTTATGGTGCAACGTT 60.604 45.455 0.00 0.00 41.74 3.99
114 115 2.970609 CGTTTCTTATGGTGCAACGTTG 59.029 45.455 23.90 23.90 38.12 4.10
115 116 3.305110 GTTTCTTATGGTGCAACGTTGG 58.695 45.455 28.33 11.40 38.12 3.77
116 117 2.552599 TCTTATGGTGCAACGTTGGA 57.447 45.000 28.33 24.15 38.12 3.53
120 121 2.898343 GGTGCAACGTTGGACGGT 60.898 61.111 36.03 0.00 45.77 4.83
121 122 1.594836 GGTGCAACGTTGGACGGTA 60.595 57.895 36.03 7.95 41.04 4.02
122 123 1.566077 GTGCAACGTTGGACGGTAC 59.434 57.895 32.36 13.63 41.04 3.34
123 124 1.143401 TGCAACGTTGGACGGTACA 59.857 52.632 28.33 13.63 41.04 2.90
124 125 1.152989 TGCAACGTTGGACGGTACAC 61.153 55.000 28.33 9.78 41.04 2.90
125 126 1.847975 CAACGTTGGACGGTACACG 59.152 57.895 20.71 11.88 41.04 4.49
126 127 0.594540 CAACGTTGGACGGTACACGA 60.595 55.000 20.71 0.00 41.04 4.35
127 128 0.318107 AACGTTGGACGGTACACGAG 60.318 55.000 17.89 5.19 41.28 4.18
136 137 4.409218 GTACACGAGCGGCGACCA 62.409 66.667 12.98 0.00 44.57 4.02
137 138 3.672447 TACACGAGCGGCGACCAA 61.672 61.111 12.98 0.00 44.57 3.67
138 139 3.902162 TACACGAGCGGCGACCAAC 62.902 63.158 12.98 0.00 44.57 3.77
142 143 2.742372 GAGCGGCGACCAACACAT 60.742 61.111 12.98 0.00 0.00 3.21
143 144 3.027170 GAGCGGCGACCAACACATG 62.027 63.158 12.98 0.00 0.00 3.21
151 152 3.756802 CCAACACATGGGCGTTGA 58.243 55.556 20.24 0.00 46.27 3.18
152 153 1.285641 CCAACACATGGGCGTTGAC 59.714 57.895 20.24 0.00 46.27 3.18
153 154 1.285641 CAACACATGGGCGTTGACC 59.714 57.895 15.83 0.00 44.20 4.02
159 160 2.282110 TGGGCGTTGACCATGGTG 60.282 61.111 25.52 9.09 34.69 4.17
160 161 2.282180 GGGCGTTGACCATGGTGT 60.282 61.111 25.52 0.00 0.00 4.16
161 162 2.332654 GGGCGTTGACCATGGTGTC 61.333 63.158 25.52 9.32 35.77 3.67
162 163 1.302511 GGCGTTGACCATGGTGTCT 60.303 57.895 25.52 0.00 36.21 3.41
163 164 1.298859 GGCGTTGACCATGGTGTCTC 61.299 60.000 25.52 8.41 36.21 3.36
164 165 1.626654 GCGTTGACCATGGTGTCTCG 61.627 60.000 25.52 20.60 36.21 4.04
165 166 1.626654 CGTTGACCATGGTGTCTCGC 61.627 60.000 25.52 7.14 36.21 5.03
166 167 1.374125 TTGACCATGGTGTCTCGCG 60.374 57.895 25.52 0.00 36.21 5.87
167 168 2.094757 TTGACCATGGTGTCTCGCGT 62.095 55.000 25.52 0.00 36.21 6.01
168 169 2.048222 ACCATGGTGTCTCGCGTG 60.048 61.111 18.99 3.13 0.00 5.34
169 170 3.490759 CCATGGTGTCTCGCGTGC 61.491 66.667 5.77 0.50 0.00 5.34
170 171 2.738139 CATGGTGTCTCGCGTGCA 60.738 61.111 5.77 3.46 0.00 4.57
171 172 2.030412 ATGGTGTCTCGCGTGCAA 59.970 55.556 5.77 0.00 0.00 4.08
172 173 2.317609 ATGGTGTCTCGCGTGCAAC 61.318 57.895 5.77 9.71 0.00 4.17
173 174 2.964925 GGTGTCTCGCGTGCAACA 60.965 61.111 5.77 1.86 35.74 3.33
174 175 2.245532 GTGTCTCGCGTGCAACAC 59.754 61.111 14.62 14.62 35.74 3.32
175 176 2.202810 TGTCTCGCGTGCAACACA 60.203 55.556 5.77 0.64 35.74 3.72
176 177 1.811679 TGTCTCGCGTGCAACACAA 60.812 52.632 5.77 0.00 35.74 3.33
177 178 1.157257 TGTCTCGCGTGCAACACAAT 61.157 50.000 5.77 0.00 35.74 2.71
178 179 0.722469 GTCTCGCGTGCAACACAATG 60.722 55.000 5.77 0.00 35.74 2.82
179 180 1.157257 TCTCGCGTGCAACACAATGT 61.157 50.000 5.77 0.00 35.74 2.71
180 181 0.510790 CTCGCGTGCAACACAATGTA 59.489 50.000 5.77 0.00 35.74 2.29
181 182 0.233590 TCGCGTGCAACACAATGTAC 59.766 50.000 5.77 0.00 35.74 2.90
182 183 0.041751 CGCGTGCAACACAATGTACA 60.042 50.000 0.00 0.00 35.90 2.90
183 184 1.394697 GCGTGCAACACAATGTACAC 58.605 50.000 0.00 5.42 35.90 2.90
184 185 1.657839 CGTGCAACACAATGTACACG 58.342 50.000 17.49 17.49 46.64 4.49
186 187 3.536158 GTGCAACACAATGTACACGAT 57.464 42.857 0.00 0.00 36.15 3.73
187 188 3.225548 GTGCAACACAATGTACACGATG 58.774 45.455 0.00 0.21 36.15 3.84
188 189 2.225255 TGCAACACAATGTACACGATGG 59.775 45.455 0.00 0.00 0.00 3.51
189 190 2.482336 GCAACACAATGTACACGATGGA 59.518 45.455 0.00 0.00 0.00 3.41
190 191 3.126858 GCAACACAATGTACACGATGGAT 59.873 43.478 0.00 0.00 0.00 3.41
191 192 4.650985 CAACACAATGTACACGATGGATG 58.349 43.478 0.00 0.00 0.00 3.51
192 193 4.200838 ACACAATGTACACGATGGATGA 57.799 40.909 0.00 0.00 0.00 2.92
193 194 4.769688 ACACAATGTACACGATGGATGAT 58.230 39.130 0.00 0.00 0.00 2.45
194 195 4.811024 ACACAATGTACACGATGGATGATC 59.189 41.667 0.00 0.00 0.00 2.92
195 196 4.810491 CACAATGTACACGATGGATGATCA 59.190 41.667 0.00 0.00 0.00 2.92
196 197 4.811024 ACAATGTACACGATGGATGATCAC 59.189 41.667 0.00 0.00 0.00 3.06
197 198 4.944619 ATGTACACGATGGATGATCACT 57.055 40.909 0.00 0.00 0.00 3.41
198 199 6.183360 ACAATGTACACGATGGATGATCACTA 60.183 38.462 0.00 0.00 0.00 2.74
199 200 5.845391 TGTACACGATGGATGATCACTAA 57.155 39.130 0.00 0.00 0.00 2.24
200 201 6.215495 TGTACACGATGGATGATCACTAAA 57.785 37.500 0.00 0.00 0.00 1.85
201 202 6.635755 TGTACACGATGGATGATCACTAAAA 58.364 36.000 0.00 0.00 0.00 1.52
202 203 7.100409 TGTACACGATGGATGATCACTAAAAA 58.900 34.615 0.00 0.00 0.00 1.94
203 204 7.768582 TGTACACGATGGATGATCACTAAAAAT 59.231 33.333 0.00 0.00 0.00 1.82
204 205 7.019774 ACACGATGGATGATCACTAAAAATG 57.980 36.000 0.00 0.00 0.00 2.32
205 206 6.038603 ACACGATGGATGATCACTAAAAATGG 59.961 38.462 0.00 0.00 0.00 3.16
206 207 5.009010 ACGATGGATGATCACTAAAAATGGC 59.991 40.000 0.00 0.00 0.00 4.40
207 208 5.008911 CGATGGATGATCACTAAAAATGGCA 59.991 40.000 0.00 0.00 0.00 4.92
208 209 6.294342 CGATGGATGATCACTAAAAATGGCAT 60.294 38.462 0.00 0.00 0.00 4.40
209 210 7.094677 CGATGGATGATCACTAAAAATGGCATA 60.095 37.037 0.00 0.00 0.00 3.14
210 211 8.660295 ATGGATGATCACTAAAAATGGCATAT 57.340 30.769 0.00 0.00 0.00 1.78
211 212 8.114331 TGGATGATCACTAAAAATGGCATATC 57.886 34.615 0.00 0.00 0.00 1.63
212 213 7.094677 TGGATGATCACTAAAAATGGCATATCG 60.095 37.037 0.00 0.00 0.00 2.92
213 214 7.094634 GGATGATCACTAAAAATGGCATATCGT 60.095 37.037 0.00 0.00 0.00 3.73
214 215 8.846943 ATGATCACTAAAAATGGCATATCGTA 57.153 30.769 0.00 0.00 0.00 3.43
215 216 8.669946 TGATCACTAAAAATGGCATATCGTAA 57.330 30.769 0.00 0.00 0.00 3.18
216 217 9.114952 TGATCACTAAAAATGGCATATCGTAAA 57.885 29.630 0.00 0.00 0.00 2.01
217 218 9.944663 GATCACTAAAAATGGCATATCGTAAAA 57.055 29.630 0.00 0.00 0.00 1.52
224 225 9.651913 AAAAATGGCATATCGTAAAAATGTCTT 57.348 25.926 0.00 0.00 0.00 3.01
235 236 9.974980 ATCGTAAAAATGTCTTAAATTGGTGTT 57.025 25.926 0.00 0.00 0.00 3.32
255 256 9.585099 TGGTGTTAATTCATTCTAATCATTTGC 57.415 29.630 0.00 0.00 0.00 3.68
256 257 9.585099 GGTGTTAATTCATTCTAATCATTTGCA 57.415 29.630 0.00 0.00 0.00 4.08
262 263 9.729281 AATTCATTCTAATCATTTGCAAAAGGT 57.271 25.926 17.19 4.91 0.00 3.50
263 264 8.761575 TTCATTCTAATCATTTGCAAAAGGTC 57.238 30.769 17.19 0.00 0.00 3.85
264 265 7.894708 TCATTCTAATCATTTGCAAAAGGTCA 58.105 30.769 17.19 0.00 0.00 4.02
265 266 8.366401 TCATTCTAATCATTTGCAAAAGGTCAA 58.634 29.630 17.19 2.84 0.00 3.18
266 267 8.991026 CATTCTAATCATTTGCAAAAGGTCAAA 58.009 29.630 17.19 6.32 36.72 2.69
267 268 8.954950 TTCTAATCATTTGCAAAAGGTCAAAA 57.045 26.923 17.19 4.06 36.02 2.44
268 269 8.954950 TCTAATCATTTGCAAAAGGTCAAAAA 57.045 26.923 17.19 0.00 36.02 1.94
305 306 9.768662 TTAGTCGACTAAGATTTAACCAAGTTT 57.231 29.630 29.57 0.10 33.83 2.66
306 307 8.672823 AGTCGACTAAGATTTAACCAAGTTTT 57.327 30.769 18.46 0.00 0.00 2.43
307 308 9.768662 AGTCGACTAAGATTTAACCAAGTTTTA 57.231 29.630 18.46 0.00 0.00 1.52
309 310 9.768662 TCGACTAAGATTTAACCAAGTTTTAGT 57.231 29.630 2.68 2.68 35.39 2.24
316 317 9.403583 AGATTTAACCAAGTTTTAGTCAAGTGA 57.596 29.630 0.00 0.00 0.00 3.41
317 318 9.447040 GATTTAACCAAGTTTTAGTCAAGTGAC 57.553 33.333 3.12 3.12 45.08 3.67
333 334 8.832487 GTCAAGTGACATAATATGCAAAAGAG 57.168 34.615 6.57 0.00 44.18 2.85
334 335 8.668353 GTCAAGTGACATAATATGCAAAAGAGA 58.332 33.333 6.57 0.00 44.18 3.10
335 336 9.230122 TCAAGTGACATAATATGCAAAAGAGAA 57.770 29.630 0.00 0.00 0.00 2.87
336 337 9.844790 CAAGTGACATAATATGCAAAAGAGAAA 57.155 29.630 0.00 0.00 0.00 2.52
338 339 9.453572 AGTGACATAATATGCAAAAGAGAAAGA 57.546 29.630 0.00 0.00 0.00 2.52
368 369 8.460831 ACTGAAAATAAAAATTACACGGATGC 57.539 30.769 0.00 0.00 0.00 3.91
369 370 7.544217 ACTGAAAATAAAAATTACACGGATGCC 59.456 33.333 0.00 0.00 0.00 4.40
370 371 7.378966 TGAAAATAAAAATTACACGGATGCCA 58.621 30.769 0.00 0.00 0.00 4.92
371 372 7.872993 TGAAAATAAAAATTACACGGATGCCAA 59.127 29.630 0.00 0.00 0.00 4.52
372 373 7.589574 AAATAAAAATTACACGGATGCCAAC 57.410 32.000 0.00 0.00 0.00 3.77
373 374 2.911819 AAATTACACGGATGCCAACG 57.088 45.000 0.00 0.00 0.00 4.10
374 375 1.816074 AATTACACGGATGCCAACGT 58.184 45.000 0.00 0.00 45.25 3.99
375 376 2.676632 ATTACACGGATGCCAACGTA 57.323 45.000 0.00 0.00 42.04 3.57
376 377 2.452295 TTACACGGATGCCAACGTAA 57.548 45.000 0.00 0.00 42.04 3.18
377 378 2.452295 TACACGGATGCCAACGTAAA 57.548 45.000 0.00 0.00 42.04 2.01
378 379 1.816074 ACACGGATGCCAACGTAAAT 58.184 45.000 0.00 0.00 42.04 1.40
379 380 2.156098 ACACGGATGCCAACGTAAATT 58.844 42.857 0.00 0.00 42.04 1.82
380 381 2.554893 ACACGGATGCCAACGTAAATTT 59.445 40.909 0.00 0.00 42.04 1.82
381 382 3.004944 ACACGGATGCCAACGTAAATTTT 59.995 39.130 0.00 0.00 42.04 1.82
382 383 4.215827 ACACGGATGCCAACGTAAATTTTA 59.784 37.500 0.00 0.00 42.04 1.52
383 384 5.106078 ACACGGATGCCAACGTAAATTTTAT 60.106 36.000 0.00 0.00 42.04 1.40
384 385 5.229052 CACGGATGCCAACGTAAATTTTATG 59.771 40.000 0.00 6.80 42.04 1.90
385 386 5.124138 ACGGATGCCAACGTAAATTTTATGA 59.876 36.000 13.92 0.00 42.15 2.15
386 387 6.183360 ACGGATGCCAACGTAAATTTTATGAT 60.183 34.615 13.92 1.01 42.15 2.45
387 388 7.012515 ACGGATGCCAACGTAAATTTTATGATA 59.987 33.333 13.92 0.00 42.15 2.15
388 389 7.533900 CGGATGCCAACGTAAATTTTATGATAG 59.466 37.037 13.92 0.00 0.00 2.08
389 390 8.349983 GGATGCCAACGTAAATTTTATGATAGT 58.650 33.333 13.92 0.00 0.00 2.12
393 394 9.607285 GCCAACGTAAATTTTATGATAGTATGG 57.393 33.333 13.92 11.66 0.00 2.74
408 409 8.510243 TGATAGTATGGACTAACACTTAACGA 57.490 34.615 0.00 0.00 41.53 3.85
409 410 8.959548 TGATAGTATGGACTAACACTTAACGAA 58.040 33.333 0.00 0.00 41.53 3.85
410 411 9.448294 GATAGTATGGACTAACACTTAACGAAG 57.552 37.037 0.00 0.00 41.53 3.79
411 412 7.224522 AGTATGGACTAACACTTAACGAAGT 57.775 36.000 0.00 0.00 39.38 3.01
412 413 7.311408 AGTATGGACTAACACTTAACGAAGTC 58.689 38.462 0.00 0.00 37.76 3.01
413 414 4.539870 TGGACTAACACTTAACGAAGTCG 58.460 43.478 0.00 0.00 45.00 4.18
414 415 3.363128 GGACTAACACTTAACGAAGTCGC 59.637 47.826 0.00 0.00 45.00 5.19
415 416 2.975851 ACTAACACTTAACGAAGTCGCG 59.024 45.455 0.00 0.00 45.00 5.87
416 417 1.134226 AACACTTAACGAAGTCGCGG 58.866 50.000 6.13 0.00 45.00 6.46
417 418 0.031178 ACACTTAACGAAGTCGCGGT 59.969 50.000 6.13 0.00 45.00 5.68
418 419 0.706729 CACTTAACGAAGTCGCGGTC 59.293 55.000 6.13 0.18 45.00 4.79
419 420 0.727122 ACTTAACGAAGTCGCGGTCG 60.727 55.000 20.75 20.75 45.00 4.79
420 421 0.453282 CTTAACGAAGTCGCGGTCGA 60.453 55.000 26.44 9.12 45.00 4.20
434 435 1.974487 GGTCGACCGAGACTAACAAC 58.026 55.000 20.85 0.00 40.76 3.32
435 436 1.267806 GGTCGACCGAGACTAACAACA 59.732 52.381 20.85 0.00 40.76 3.33
436 437 2.314122 GTCGACCGAGACTAACAACAC 58.686 52.381 3.51 0.00 38.09 3.32
437 438 2.031333 GTCGACCGAGACTAACAACACT 60.031 50.000 3.51 0.00 38.09 3.55
438 439 2.031420 TCGACCGAGACTAACAACACTG 60.031 50.000 0.00 0.00 0.00 3.66
439 440 2.031420 CGACCGAGACTAACAACACTGA 60.031 50.000 0.00 0.00 0.00 3.41
440 441 3.549423 CGACCGAGACTAACAACACTGAA 60.549 47.826 0.00 0.00 0.00 3.02
441 442 4.365723 GACCGAGACTAACAACACTGAAA 58.634 43.478 0.00 0.00 0.00 2.69
442 443 4.761975 ACCGAGACTAACAACACTGAAAA 58.238 39.130 0.00 0.00 0.00 2.29
443 444 5.180271 ACCGAGACTAACAACACTGAAAAA 58.820 37.500 0.00 0.00 0.00 1.94
486 487 2.355363 CGCGGGTGAGACGAAACA 60.355 61.111 0.00 0.00 0.00 2.83
489 490 1.566018 GCGGGTGAGACGAAACAAGG 61.566 60.000 0.00 0.00 0.00 3.61
501 502 0.673437 AAACAAGGCAACATCCACCG 59.327 50.000 0.00 0.00 41.41 4.94
502 503 0.467290 AACAAGGCAACATCCACCGT 60.467 50.000 0.00 0.00 41.41 4.83
503 504 1.172180 ACAAGGCAACATCCACCGTG 61.172 55.000 0.00 0.00 38.68 4.94
504 505 2.268076 AAGGCAACATCCACCGTGC 61.268 57.895 0.00 0.00 41.41 5.34
505 506 2.672996 GGCAACATCCACCGTGCT 60.673 61.111 0.00 0.00 0.00 4.40
506 507 2.268076 GGCAACATCCACCGTGCTT 61.268 57.895 0.00 0.00 0.00 3.91
507 508 1.210155 GCAACATCCACCGTGCTTC 59.790 57.895 0.00 0.00 0.00 3.86
508 509 1.497278 CAACATCCACCGTGCTTCG 59.503 57.895 0.00 0.00 39.52 3.79
546 547 1.356624 GACAACACCAGCACTGTGC 59.643 57.895 24.59 24.59 45.46 4.57
692 724 1.445582 AGACGAGTTTAAGCCGGCG 60.446 57.895 23.20 6.46 36.27 6.46
735 781 1.139058 ACGGGAAGAGGAATGATTCGG 59.861 52.381 0.00 0.00 0.00 4.30
739 785 0.815615 AAGAGGAATGATTCGGCCGC 60.816 55.000 23.51 7.40 0.00 6.53
760 806 2.025418 CGGACCACGCAACAGTACC 61.025 63.158 0.00 0.00 34.82 3.34
761 807 2.025418 GGACCACGCAACAGTACCG 61.025 63.158 0.00 0.00 0.00 4.02
836 926 3.083997 ACGTGATGCCTCCCCTCC 61.084 66.667 0.00 0.00 0.00 4.30
868 958 5.071091 ACCTGTCACTGAGACCAAGGTTC 62.071 52.174 10.19 0.00 46.15 3.62
949 1039 1.298713 CTCGCGTACTGCTGCTAGG 60.299 63.158 5.77 0.00 43.27 3.02
976 1072 1.803998 GCAGCTCATCACATCAGCGTA 60.804 52.381 0.00 0.00 38.26 4.42
977 1073 2.125685 CAGCTCATCACATCAGCGTAG 58.874 52.381 0.00 0.00 38.26 3.51
978 1074 1.753649 AGCTCATCACATCAGCGTAGT 59.246 47.619 0.00 0.00 38.26 2.73
994 1090 3.343990 CGTAGTATTAGATAGCGAGCGC 58.656 50.000 6.78 6.78 42.33 5.92
995 1091 3.181523 CGTAGTATTAGATAGCGAGCGCA 60.182 47.826 17.68 3.67 44.88 6.09
996 1092 3.204597 AGTATTAGATAGCGAGCGCAC 57.795 47.619 17.68 0.96 44.88 5.34
997 1093 1.905687 GTATTAGATAGCGAGCGCACG 59.094 52.381 23.09 23.09 44.88 5.34
998 1094 0.387367 ATTAGATAGCGAGCGCACGG 60.387 55.000 27.65 10.49 44.88 4.94
999 1095 2.402282 TTAGATAGCGAGCGCACGGG 62.402 60.000 27.65 6.01 44.88 5.28
1001 1097 3.559657 GATAGCGAGCGCACGGGAT 62.560 63.158 27.65 6.60 44.88 3.85
1028 1165 4.530857 GGAGGACGCGGTCATGGG 62.531 72.222 12.47 0.00 33.68 4.00
1287 1424 4.789075 GCGCAGGCCAATGCACAG 62.789 66.667 16.45 2.39 46.87 3.66
1290 1427 4.789075 CAGGCCAATGCACAGCGC 62.789 66.667 5.01 0.00 40.13 5.92
1309 1446 2.192443 CGGAGAGGAGGCGTAGGA 59.808 66.667 0.00 0.00 0.00 2.94
1311 1448 2.188161 GGAGAGGAGGCGTAGGACG 61.188 68.421 0.00 0.00 45.88 4.79
1312 1449 2.124236 AGAGGAGGCGTAGGACGG 60.124 66.667 0.70 0.00 42.82 4.79
1453 1656 0.953471 CCAATCTGCGTTCCGTTCCA 60.953 55.000 0.00 0.00 0.00 3.53
1474 1677 2.029290 ACCGAGTTCTTCTAACACGCAT 60.029 45.455 2.79 0.00 33.91 4.73
1476 1679 3.060895 CCGAGTTCTTCTAACACGCATTC 59.939 47.826 2.79 0.00 33.91 2.67
1500 1703 2.513204 CAGCAGGTGATGGGCTCG 60.513 66.667 0.00 0.00 35.27 5.03
1557 1760 0.578683 CGATGGAGTACAGCAATGCG 59.421 55.000 0.00 0.00 34.42 4.73
1585 1788 1.199615 CTCCTCCACCTTCTTCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
1588 1791 1.612442 TCCACCTTCTTCTCCCCGG 60.612 63.158 0.00 0.00 0.00 5.73
1645 1848 6.356190 GCATTAACGTCGCATAACTAATTTCC 59.644 38.462 0.00 0.00 0.00 3.13
1652 1855 6.073765 CGTCGCATAACTAATTTCCTGCTTAT 60.074 38.462 0.00 0.00 0.00 1.73
1653 1856 7.115805 CGTCGCATAACTAATTTCCTGCTTATA 59.884 37.037 0.00 0.00 0.00 0.98
1654 1857 8.221766 GTCGCATAACTAATTTCCTGCTTATAC 58.778 37.037 0.00 0.00 0.00 1.47
1657 1860 8.507249 GCATAACTAATTTCCTGCTTATACTGG 58.493 37.037 0.00 0.00 0.00 4.00
1658 1861 6.944234 AACTAATTTCCTGCTTATACTGGC 57.056 37.500 0.00 0.00 0.00 4.85
1659 1862 6.001449 ACTAATTTCCTGCTTATACTGGCA 57.999 37.500 0.00 0.00 36.94 4.92
1778 1981 3.443045 CCAAGCCGATGCCCACAC 61.443 66.667 0.00 0.00 38.69 3.82
1815 2018 1.574702 CCGACCTTTTTCCGTGCTCC 61.575 60.000 0.00 0.00 0.00 4.70
1816 2019 1.574702 CGACCTTTTTCCGTGCTCCC 61.575 60.000 0.00 0.00 0.00 4.30
1818 2021 0.822121 ACCTTTTTCCGTGCTCCCAC 60.822 55.000 0.00 0.00 38.62 4.61
1826 2029 4.134623 GTGCTCCCACGAACACAA 57.865 55.556 0.00 0.00 35.54 3.33
1828 2031 0.814010 GTGCTCCCACGAACACAAGT 60.814 55.000 0.00 0.00 35.54 3.16
1838 2041 4.457810 CACGAACACAAGTAGCATTTCAG 58.542 43.478 0.00 0.00 0.00 3.02
1839 2042 3.058914 ACGAACACAAGTAGCATTTCAGC 60.059 43.478 0.00 0.00 0.00 4.26
1841 2044 1.806542 ACACAAGTAGCATTTCAGCCG 59.193 47.619 0.00 0.00 34.23 5.52
1863 2075 6.530181 GCCGTAGAAACTCAAATATTTTTGGG 59.470 38.462 6.93 6.93 46.80 4.12
1864 2076 7.576098 GCCGTAGAAACTCAAATATTTTTGGGA 60.576 37.037 14.52 0.00 44.68 4.37
1865 2077 8.466798 CCGTAGAAACTCAAATATTTTTGGGAT 58.533 33.333 14.52 0.74 44.68 3.85
1872 2089 7.678837 ACTCAAATATTTTTGGGATTTCTGCA 58.321 30.769 14.52 0.00 44.68 4.41
1941 2162 4.030452 GTCGCTGTTGGTGCTGGC 62.030 66.667 0.00 0.00 0.00 4.85
1980 2201 2.817396 GCTGCTCTGCTCCGTTCC 60.817 66.667 0.00 0.00 0.00 3.62
1983 2204 2.507324 GCTCTGCTCCGTTCCGTC 60.507 66.667 0.00 0.00 0.00 4.79
1986 2207 2.182030 CTGCTCCGTTCCGTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
2014 2235 2.443016 AGGAGACGGGCAGCTAGG 60.443 66.667 0.00 0.00 0.00 3.02
2015 2236 2.442272 GGAGACGGGCAGCTAGGA 60.442 66.667 0.00 0.00 0.00 2.94
2016 2237 2.494530 GGAGACGGGCAGCTAGGAG 61.495 68.421 0.00 0.00 0.00 3.69
2017 2238 1.454111 GAGACGGGCAGCTAGGAGA 60.454 63.158 0.00 0.00 0.00 3.71
2018 2239 1.000486 AGACGGGCAGCTAGGAGAA 60.000 57.895 0.00 0.00 0.00 2.87
2019 2240 1.040339 AGACGGGCAGCTAGGAGAAG 61.040 60.000 0.00 0.00 0.00 2.85
2085 2313 6.377327 TTTCATGTCTTGAGGTTGAGTTTC 57.623 37.500 0.00 0.00 35.27 2.78
2101 2329 7.862873 GGTTGAGTTTCTTCAGATTAGTTTTGG 59.137 37.037 0.00 0.00 0.00 3.28
2138 2370 1.772063 GCGTGTGTCCTGTGTTCACC 61.772 60.000 0.37 0.00 0.00 4.02
2143 2375 0.468226 TGTCCTGTGTTCACCTCACC 59.532 55.000 0.37 0.00 35.25 4.02
2155 2387 2.044555 CCTCACCATGGCTGCAGTG 61.045 63.158 16.64 5.66 0.00 3.66
2231 2467 2.956333 AGGGGAAAGAAAGGAAAACACG 59.044 45.455 0.00 0.00 0.00 4.49
2302 2549 1.709578 TGGCACCCTAGCTATCTCTG 58.290 55.000 0.00 0.00 34.17 3.35
2318 2565 0.944386 TCTGAGGTTTGCAAGCGTTC 59.056 50.000 9.88 9.24 0.00 3.95
2328 2575 0.663153 GCAAGCGTTCAAGTCAACCT 59.337 50.000 0.00 0.00 0.00 3.50
2337 2584 0.679505 CAAGTCAACCTCTCCGTCCA 59.320 55.000 0.00 0.00 0.00 4.02
2338 2585 0.969894 AAGTCAACCTCTCCGTCCAG 59.030 55.000 0.00 0.00 0.00 3.86
2339 2586 0.900647 AGTCAACCTCTCCGTCCAGG 60.901 60.000 0.00 0.00 42.97 4.45
2340 2587 2.266055 CAACCTCTCCGTCCAGGC 59.734 66.667 0.00 0.00 40.77 4.85
2341 2588 3.382832 AACCTCTCCGTCCAGGCG 61.383 66.667 0.00 0.00 40.77 5.52
2342 2589 3.881019 AACCTCTCCGTCCAGGCGA 62.881 63.158 4.99 0.00 40.77 5.54
2343 2590 3.827898 CCTCTCCGTCCAGGCGAC 61.828 72.222 4.99 0.00 40.77 5.19
2344 2591 3.062466 CTCTCCGTCCAGGCGACA 61.062 66.667 0.00 0.00 42.07 4.35
2345 2592 3.343788 CTCTCCGTCCAGGCGACAC 62.344 68.421 0.00 0.00 42.07 3.67
2346 2593 4.436998 CTCCGTCCAGGCGACACC 62.437 72.222 0.00 0.00 42.07 4.16
2360 2607 1.168714 GACACCACCATCTTTGAGCC 58.831 55.000 0.00 0.00 0.00 4.70
2366 2613 1.938577 CACCATCTTTGAGCCGATGAG 59.061 52.381 0.00 0.00 39.43 2.90
2404 2651 7.182206 ACTCCTCTCTTCTCTTCTAGAACTAGT 59.818 40.741 0.00 0.00 39.36 2.57
2405 2652 8.612486 TCCTCTCTTCTCTTCTAGAACTAGTA 57.388 38.462 0.00 0.00 39.36 1.82
2406 2653 8.701895 TCCTCTCTTCTCTTCTAGAACTAGTAG 58.298 40.741 0.00 5.86 39.36 2.57
2473 2724 1.520787 GACCAAGTATCGCCACCCG 60.521 63.158 0.00 0.00 38.61 5.28
2515 2766 4.017407 ACCCTGTCCATCAGTCTCTAACTA 60.017 45.833 0.00 0.00 42.19 2.24
2530 2781 5.762218 TCTCTAACTACAACTAGGGCGTATC 59.238 44.000 0.00 0.00 0.00 2.24
2536 2787 2.754552 ACAACTAGGGCGTATCGTTGTA 59.245 45.455 17.87 0.00 44.27 2.41
2549 2800 3.909776 TCGTTGTACGAGAGTGATTGT 57.090 42.857 0.00 0.00 46.73 2.71
2552 2803 4.082949 TCGTTGTACGAGAGTGATTGTCAT 60.083 41.667 0.00 0.00 46.73 3.06
2563 2814 1.339291 TGATTGTCATGCCGTTTTGCA 59.661 42.857 0.00 0.00 46.94 4.08
2581 2832 1.410882 GCAGGGGCACTTGTAAAAACA 59.589 47.619 0.00 0.00 40.72 2.83
2585 2836 2.482316 GGGGCACTTGTAAAAACACCAC 60.482 50.000 0.00 0.00 0.00 4.16
2592 2843 6.483687 CACTTGTAAAAACACCACACTCTAC 58.516 40.000 0.00 0.00 0.00 2.59
2593 2844 5.587443 ACTTGTAAAAACACCACACTCTACC 59.413 40.000 0.00 0.00 0.00 3.18
2604 2855 4.481280 ACCACACTCTACCCTCCTCTTATA 59.519 45.833 0.00 0.00 0.00 0.98
2605 2856 5.136392 ACCACACTCTACCCTCCTCTTATAT 59.864 44.000 0.00 0.00 0.00 0.86
2616 2867 6.905776 ACCCTCCTCTTATATAATGGATGAGG 59.094 42.308 19.07 19.07 39.02 3.86
2618 2869 6.385176 CCTCCTCTTATATAATGGATGAGGCA 59.615 42.308 17.20 9.43 39.36 4.75
2628 2879 3.726557 TGGATGAGGCAGATCTTTTGT 57.273 42.857 0.00 0.00 0.00 2.83
2629 2880 4.038271 TGGATGAGGCAGATCTTTTGTT 57.962 40.909 0.00 0.00 0.00 2.83
2632 2883 4.460382 GGATGAGGCAGATCTTTTGTTTCA 59.540 41.667 0.00 0.00 0.00 2.69
2633 2884 5.126707 GGATGAGGCAGATCTTTTGTTTCAT 59.873 40.000 0.00 0.00 0.00 2.57
2634 2885 6.319658 GGATGAGGCAGATCTTTTGTTTCATA 59.680 38.462 0.00 0.00 0.00 2.15
2635 2886 7.148018 GGATGAGGCAGATCTTTTGTTTCATAA 60.148 37.037 0.00 0.00 0.00 1.90
2638 2892 8.084073 TGAGGCAGATCTTTTGTTTCATAAAAG 58.916 33.333 0.00 0.00 43.22 2.27
2720 3133 7.147811 ACAGCAAAGCTTAGCTAGACTAATACT 60.148 37.037 7.32 0.00 40.11 2.12
2721 3134 8.353684 CAGCAAAGCTTAGCTAGACTAATACTA 58.646 37.037 7.32 0.00 40.11 1.82
2722 3135 8.354426 AGCAAAGCTTAGCTAGACTAATACTAC 58.646 37.037 7.32 0.00 40.11 2.73
2725 3138 8.763984 AAGCTTAGCTAGACTAATACTACCAA 57.236 34.615 7.32 0.00 40.11 3.67
2757 3170 2.401766 ACGGGCGTCCACGTACTAG 61.402 63.158 6.96 0.00 42.15 2.57
2758 3171 2.103736 GGGCGTCCACGTACTAGC 59.896 66.667 0.00 0.00 42.22 3.42
2759 3172 2.703798 GGGCGTCCACGTACTAGCA 61.704 63.158 0.00 0.00 42.22 3.49
2769 3182 5.008811 GTCCACGTACTAGCACATCTCTTAT 59.991 44.000 0.00 0.00 0.00 1.73
2789 3202 7.484975 TCTTATTTTTGTCGTGTTTGATGGTT 58.515 30.769 0.00 0.00 0.00 3.67
2798 3211 4.036971 TCGTGTTTGATGGTTACAAAAGGG 59.963 41.667 0.00 0.00 38.63 3.95
2805 3218 0.879090 GGTTACAAAAGGGAGTGGCG 59.121 55.000 0.00 0.00 0.00 5.69
2853 3270 3.969312 CTCAAATTTGGATTAGGCCCCAT 59.031 43.478 17.90 0.00 31.66 4.00
2885 3302 0.255318 CCAGAAGCCAAGCCAGATCT 59.745 55.000 0.00 0.00 0.00 2.75
2886 3303 1.666054 CAGAAGCCAAGCCAGATCTC 58.334 55.000 0.00 0.00 0.00 2.75
2887 3304 1.209990 CAGAAGCCAAGCCAGATCTCT 59.790 52.381 0.00 0.00 0.00 3.10
2888 3305 1.485895 AGAAGCCAAGCCAGATCTCTC 59.514 52.381 0.00 0.00 0.00 3.20
2889 3306 0.177604 AAGCCAAGCCAGATCTCTCG 59.822 55.000 0.00 0.00 0.00 4.04
2890 3307 0.685785 AGCCAAGCCAGATCTCTCGA 60.686 55.000 0.00 0.00 0.00 4.04
2891 3308 0.529555 GCCAAGCCAGATCTCTCGAC 60.530 60.000 0.00 0.00 0.00 4.20
2892 3309 0.248825 CCAAGCCAGATCTCTCGACG 60.249 60.000 0.00 0.00 0.00 5.12
2893 3310 0.248825 CAAGCCAGATCTCTCGACGG 60.249 60.000 0.00 0.00 0.00 4.79
2894 3311 1.388065 AAGCCAGATCTCTCGACGGG 61.388 60.000 0.00 0.00 0.00 5.28
2895 3312 1.824329 GCCAGATCTCTCGACGGGA 60.824 63.158 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.499756 TAGGCTGCGATGCAACGTGA 62.500 55.000 17.99 4.29 38.41 4.35
1 2 1.431488 ATAGGCTGCGATGCAACGTG 61.431 55.000 17.99 11.87 38.41 4.49
2 3 1.153369 ATAGGCTGCGATGCAACGT 60.153 52.632 17.99 0.00 38.41 3.99
3 4 1.277739 CATAGGCTGCGATGCAACG 59.722 57.895 12.54 12.54 38.41 4.10
4 5 1.097547 ACCATAGGCTGCGATGCAAC 61.098 55.000 0.00 0.00 38.41 4.17
5 6 1.096967 CACCATAGGCTGCGATGCAA 61.097 55.000 0.00 0.00 38.41 4.08
6 7 1.524393 CACCATAGGCTGCGATGCA 60.524 57.895 0.00 0.00 36.92 3.96
7 8 1.502163 GACACCATAGGCTGCGATGC 61.502 60.000 0.00 0.00 0.00 3.91
8 9 0.105593 AGACACCATAGGCTGCGATG 59.894 55.000 0.00 6.26 0.00 3.84
9 10 0.390860 GAGACACCATAGGCTGCGAT 59.609 55.000 0.00 0.00 0.00 4.58
10 11 1.676678 GGAGACACCATAGGCTGCGA 61.677 60.000 0.00 0.00 38.79 5.10
11 12 1.227380 GGAGACACCATAGGCTGCG 60.227 63.158 0.00 0.00 38.79 5.18
12 13 0.543749 AAGGAGACACCATAGGCTGC 59.456 55.000 0.00 0.00 42.04 5.25
13 14 1.833630 TGAAGGAGACACCATAGGCTG 59.166 52.381 0.00 0.00 42.04 4.85
14 15 2.114616 CTGAAGGAGACACCATAGGCT 58.885 52.381 0.00 0.00 42.04 4.58
15 16 1.834263 ACTGAAGGAGACACCATAGGC 59.166 52.381 0.00 0.00 42.04 3.93
16 17 4.022762 CGATACTGAAGGAGACACCATAGG 60.023 50.000 0.00 0.00 42.04 2.57
17 18 4.822350 TCGATACTGAAGGAGACACCATAG 59.178 45.833 0.00 0.00 42.04 2.23
18 19 4.788679 TCGATACTGAAGGAGACACCATA 58.211 43.478 0.00 0.00 42.04 2.74
19 20 3.632333 TCGATACTGAAGGAGACACCAT 58.368 45.455 0.00 0.00 42.04 3.55
20 21 3.081710 TCGATACTGAAGGAGACACCA 57.918 47.619 0.00 0.00 42.04 4.17
21 22 4.174762 GTTTCGATACTGAAGGAGACACC 58.825 47.826 0.00 0.00 39.35 4.16
22 23 3.852536 CGTTTCGATACTGAAGGAGACAC 59.147 47.826 4.49 0.00 0.00 3.67
23 24 3.672511 GCGTTTCGATACTGAAGGAGACA 60.673 47.826 4.49 0.00 0.00 3.41
24 25 2.853003 GCGTTTCGATACTGAAGGAGAC 59.147 50.000 4.49 0.00 0.00 3.36
25 26 2.159282 GGCGTTTCGATACTGAAGGAGA 60.159 50.000 4.49 0.00 0.00 3.71
26 27 2.194271 GGCGTTTCGATACTGAAGGAG 58.806 52.381 4.49 0.00 0.00 3.69
27 28 1.546923 TGGCGTTTCGATACTGAAGGA 59.453 47.619 4.49 0.00 0.00 3.36
28 29 2.004583 TGGCGTTTCGATACTGAAGG 57.995 50.000 4.49 0.00 0.00 3.46
29 30 2.285220 CCATGGCGTTTCGATACTGAAG 59.715 50.000 0.00 0.00 0.00 3.02
30 31 2.276201 CCATGGCGTTTCGATACTGAA 58.724 47.619 0.00 0.00 0.00 3.02
31 32 1.206132 ACCATGGCGTTTCGATACTGA 59.794 47.619 13.04 0.00 0.00 3.41
32 33 1.327460 CACCATGGCGTTTCGATACTG 59.673 52.381 13.04 0.00 0.00 2.74
33 34 1.066430 ACACCATGGCGTTTCGATACT 60.066 47.619 13.04 0.00 0.00 2.12
34 35 1.365699 ACACCATGGCGTTTCGATAC 58.634 50.000 13.04 0.00 0.00 2.24
35 36 2.542597 GTACACCATGGCGTTTCGATA 58.457 47.619 11.37 0.00 0.00 2.92
36 37 1.365699 GTACACCATGGCGTTTCGAT 58.634 50.000 11.37 0.00 0.00 3.59
37 38 1.009903 CGTACACCATGGCGTTTCGA 61.010 55.000 11.37 0.00 0.00 3.71
38 39 1.009903 TCGTACACCATGGCGTTTCG 61.010 55.000 11.37 15.54 0.00 3.46
39 40 1.365699 ATCGTACACCATGGCGTTTC 58.634 50.000 11.37 4.39 0.00 2.78
40 41 2.676632 TATCGTACACCATGGCGTTT 57.323 45.000 11.37 2.41 0.00 3.60
41 42 2.902705 ATATCGTACACCATGGCGTT 57.097 45.000 11.37 4.62 0.00 4.84
42 43 2.902705 AATATCGTACACCATGGCGT 57.097 45.000 13.04 11.84 0.00 5.68
43 44 4.545823 AAAAATATCGTACACCATGGCG 57.454 40.909 13.04 4.48 0.00 5.69
44 45 6.259167 TGTCTAAAAATATCGTACACCATGGC 59.741 38.462 13.04 0.00 0.00 4.40
45 46 7.042051 CCTGTCTAAAAATATCGTACACCATGG 60.042 40.741 11.19 11.19 0.00 3.66
46 47 7.042051 CCCTGTCTAAAAATATCGTACACCATG 60.042 40.741 0.00 0.00 0.00 3.66
47 48 6.990349 CCCTGTCTAAAAATATCGTACACCAT 59.010 38.462 0.00 0.00 0.00 3.55
48 49 6.070653 ACCCTGTCTAAAAATATCGTACACCA 60.071 38.462 0.00 0.00 0.00 4.17
49 50 6.257193 CACCCTGTCTAAAAATATCGTACACC 59.743 42.308 0.00 0.00 0.00 4.16
50 51 7.037438 TCACCCTGTCTAAAAATATCGTACAC 58.963 38.462 0.00 0.00 0.00 2.90
51 52 7.172868 TCACCCTGTCTAAAAATATCGTACA 57.827 36.000 0.00 0.00 0.00 2.90
52 53 8.385858 GTTTCACCCTGTCTAAAAATATCGTAC 58.614 37.037 0.00 0.00 0.00 3.67
53 54 7.276218 CGTTTCACCCTGTCTAAAAATATCGTA 59.724 37.037 0.00 0.00 0.00 3.43
54 55 6.091713 CGTTTCACCCTGTCTAAAAATATCGT 59.908 38.462 0.00 0.00 0.00 3.73
55 56 6.475207 CGTTTCACCCTGTCTAAAAATATCG 58.525 40.000 0.00 0.00 0.00 2.92
56 57 6.093633 AGCGTTTCACCCTGTCTAAAAATATC 59.906 38.462 0.00 0.00 0.00 1.63
57 58 5.944007 AGCGTTTCACCCTGTCTAAAAATAT 59.056 36.000 0.00 0.00 0.00 1.28
58 59 5.310451 AGCGTTTCACCCTGTCTAAAAATA 58.690 37.500 0.00 0.00 0.00 1.40
59 60 4.142038 AGCGTTTCACCCTGTCTAAAAAT 58.858 39.130 0.00 0.00 0.00 1.82
60 61 3.547746 AGCGTTTCACCCTGTCTAAAAA 58.452 40.909 0.00 0.00 0.00 1.94
61 62 3.202829 AGCGTTTCACCCTGTCTAAAA 57.797 42.857 0.00 0.00 0.00 1.52
62 63 2.922740 AGCGTTTCACCCTGTCTAAA 57.077 45.000 0.00 0.00 0.00 1.85
63 64 3.512329 TCATAGCGTTTCACCCTGTCTAA 59.488 43.478 0.00 0.00 0.00 2.10
64 65 3.093814 TCATAGCGTTTCACCCTGTCTA 58.906 45.455 0.00 0.00 0.00 2.59
65 66 1.899814 TCATAGCGTTTCACCCTGTCT 59.100 47.619 0.00 0.00 0.00 3.41
66 67 2.380084 TCATAGCGTTTCACCCTGTC 57.620 50.000 0.00 0.00 0.00 3.51
67 68 2.420129 GGATCATAGCGTTTCACCCTGT 60.420 50.000 0.00 0.00 0.00 4.00
68 69 2.213499 GGATCATAGCGTTTCACCCTG 58.787 52.381 0.00 0.00 0.00 4.45
69 70 1.141053 GGGATCATAGCGTTTCACCCT 59.859 52.381 0.00 0.00 33.99 4.34
70 71 1.141053 AGGGATCATAGCGTTTCACCC 59.859 52.381 0.00 0.00 36.67 4.61
71 72 2.213499 CAGGGATCATAGCGTTTCACC 58.787 52.381 0.00 0.00 0.00 4.02
72 73 2.213499 CCAGGGATCATAGCGTTTCAC 58.787 52.381 0.00 0.00 0.00 3.18
73 74 1.475034 GCCAGGGATCATAGCGTTTCA 60.475 52.381 0.00 0.00 0.00 2.69
74 75 1.230324 GCCAGGGATCATAGCGTTTC 58.770 55.000 0.00 0.00 0.00 2.78
75 76 0.532862 CGCCAGGGATCATAGCGTTT 60.533 55.000 9.61 0.00 41.78 3.60
76 77 1.069765 CGCCAGGGATCATAGCGTT 59.930 57.895 9.61 0.00 41.78 4.84
77 78 2.737180 CGCCAGGGATCATAGCGT 59.263 61.111 9.61 0.00 41.78 5.07
79 80 1.202698 AGAAACGCCAGGGATCATAGC 60.203 52.381 0.00 0.00 0.00 2.97
80 81 2.918712 AGAAACGCCAGGGATCATAG 57.081 50.000 0.00 0.00 0.00 2.23
81 82 4.504864 CCATAAGAAACGCCAGGGATCATA 60.505 45.833 0.00 0.00 0.00 2.15
82 83 3.480470 CATAAGAAACGCCAGGGATCAT 58.520 45.455 0.00 0.00 0.00 2.45
83 84 2.421388 CCATAAGAAACGCCAGGGATCA 60.421 50.000 0.00 0.00 0.00 2.92
84 85 2.222027 CCATAAGAAACGCCAGGGATC 58.778 52.381 0.00 0.00 0.00 3.36
85 86 1.564348 ACCATAAGAAACGCCAGGGAT 59.436 47.619 0.00 0.00 0.00 3.85
86 87 0.988832 ACCATAAGAAACGCCAGGGA 59.011 50.000 0.00 0.00 0.00 4.20
87 88 1.094785 CACCATAAGAAACGCCAGGG 58.905 55.000 0.00 0.00 0.00 4.45
88 89 0.451783 GCACCATAAGAAACGCCAGG 59.548 55.000 0.00 0.00 0.00 4.45
89 90 1.164411 TGCACCATAAGAAACGCCAG 58.836 50.000 0.00 0.00 0.00 4.85
90 91 1.268352 GTTGCACCATAAGAAACGCCA 59.732 47.619 0.00 0.00 0.00 5.69
91 92 1.727857 CGTTGCACCATAAGAAACGCC 60.728 52.381 0.00 0.00 37.42 5.68
92 93 1.069500 ACGTTGCACCATAAGAAACGC 60.069 47.619 6.37 0.00 45.52 4.84
93 94 2.961522 ACGTTGCACCATAAGAAACG 57.038 45.000 5.00 5.00 46.64 3.60
94 95 3.003897 TCCAACGTTGCACCATAAGAAAC 59.996 43.478 22.93 0.00 0.00 2.78
95 96 3.003897 GTCCAACGTTGCACCATAAGAAA 59.996 43.478 22.93 0.00 0.00 2.52
96 97 2.550606 GTCCAACGTTGCACCATAAGAA 59.449 45.455 22.93 0.00 0.00 2.52
97 98 2.147958 GTCCAACGTTGCACCATAAGA 58.852 47.619 22.93 9.00 0.00 2.10
98 99 1.136085 CGTCCAACGTTGCACCATAAG 60.136 52.381 22.93 6.67 36.74 1.73
99 100 0.869068 CGTCCAACGTTGCACCATAA 59.131 50.000 22.93 0.00 36.74 1.90
100 101 0.951525 CCGTCCAACGTTGCACCATA 60.952 55.000 22.93 0.57 40.58 2.74
101 102 2.258013 CCGTCCAACGTTGCACCAT 61.258 57.895 22.93 0.00 40.58 3.55
102 103 2.307611 TACCGTCCAACGTTGCACCA 62.308 55.000 22.93 2.35 40.58 4.17
103 104 1.594836 TACCGTCCAACGTTGCACC 60.595 57.895 22.93 10.85 40.58 5.01
104 105 1.152989 TGTACCGTCCAACGTTGCAC 61.153 55.000 22.93 17.75 40.58 4.57
105 106 1.143401 TGTACCGTCCAACGTTGCA 59.857 52.632 22.93 4.97 40.58 4.08
106 107 1.566077 GTGTACCGTCCAACGTTGC 59.434 57.895 22.93 9.23 40.58 4.17
107 108 0.594540 TCGTGTACCGTCCAACGTTG 60.595 55.000 21.47 21.47 40.58 4.10
108 109 0.318107 CTCGTGTACCGTCCAACGTT 60.318 55.000 0.00 0.00 40.58 3.99
109 110 1.283793 CTCGTGTACCGTCCAACGT 59.716 57.895 0.00 0.00 40.58 3.99
110 111 2.084681 GCTCGTGTACCGTCCAACG 61.085 63.158 4.11 0.00 42.11 4.10
111 112 2.084681 CGCTCGTGTACCGTCCAAC 61.085 63.158 4.11 0.00 37.94 3.77
112 113 2.256158 CGCTCGTGTACCGTCCAA 59.744 61.111 4.11 0.00 37.94 3.53
113 114 3.740397 CCGCTCGTGTACCGTCCA 61.740 66.667 4.11 0.00 37.94 4.02
119 120 3.902162 TTGGTCGCCGCTCGTGTAC 62.902 63.158 0.00 0.00 39.67 2.90
120 121 3.672447 TTGGTCGCCGCTCGTGTA 61.672 61.111 0.00 0.00 39.67 2.90
125 126 2.742372 ATGTGTTGGTCGCCGCTC 60.742 61.111 0.00 0.00 0.00 5.03
126 127 3.049674 CATGTGTTGGTCGCCGCT 61.050 61.111 0.00 0.00 0.00 5.52
127 128 4.101790 CCATGTGTTGGTCGCCGC 62.102 66.667 0.00 0.00 40.99 6.53
128 129 3.430862 CCCATGTGTTGGTCGCCG 61.431 66.667 0.00 0.00 44.83 6.46
129 130 3.747976 GCCCATGTGTTGGTCGCC 61.748 66.667 0.00 0.00 44.83 5.54
130 131 4.101790 CGCCCATGTGTTGGTCGC 62.102 66.667 0.00 0.00 40.40 5.19
132 133 3.758172 AACGCCCATGTGTTGGTC 58.242 55.556 0.00 0.00 44.83 4.02
136 137 0.539438 ATGGTCAACGCCCATGTGTT 60.539 50.000 0.00 0.00 45.79 3.32
137 138 1.074775 ATGGTCAACGCCCATGTGT 59.925 52.632 0.00 0.00 41.17 3.72
138 139 4.001248 ATGGTCAACGCCCATGTG 57.999 55.556 0.00 0.00 41.17 3.21
141 142 1.678635 CACCATGGTCAACGCCCAT 60.679 57.895 16.53 0.00 43.53 4.00
142 143 2.282110 CACCATGGTCAACGCCCA 60.282 61.111 16.53 0.00 36.16 5.36
143 144 2.282180 ACACCATGGTCAACGCCC 60.282 61.111 16.53 0.00 0.00 6.13
144 145 1.298859 GAGACACCATGGTCAACGCC 61.299 60.000 16.53 0.00 40.29 5.68
145 146 1.626654 CGAGACACCATGGTCAACGC 61.627 60.000 16.53 9.99 40.29 4.84
146 147 1.626654 GCGAGACACCATGGTCAACG 61.627 60.000 16.53 18.31 40.29 4.10
147 148 1.626654 CGCGAGACACCATGGTCAAC 61.627 60.000 16.53 9.35 40.29 3.18
148 149 1.374125 CGCGAGACACCATGGTCAA 60.374 57.895 16.53 0.00 40.29 3.18
149 150 2.261361 CGCGAGACACCATGGTCA 59.739 61.111 16.53 0.00 40.29 4.02
150 151 2.094659 CACGCGAGACACCATGGTC 61.095 63.158 16.53 4.69 38.08 4.02
151 152 2.048222 CACGCGAGACACCATGGT 60.048 61.111 15.93 13.00 0.00 3.55
152 153 3.490759 GCACGCGAGACACCATGG 61.491 66.667 15.93 11.19 0.00 3.66
153 154 2.316867 TTGCACGCGAGACACCATG 61.317 57.895 15.93 0.00 0.00 3.66
154 155 2.030412 TTGCACGCGAGACACCAT 59.970 55.556 15.93 0.00 0.00 3.55
155 156 2.964925 GTTGCACGCGAGACACCA 60.965 61.111 15.93 0.00 0.00 4.17
156 157 2.964925 TGTTGCACGCGAGACACC 60.965 61.111 15.93 0.07 0.00 4.16
157 158 2.031044 TTGTGTTGCACGCGAGACAC 62.031 55.000 15.93 20.29 41.97 3.67
158 159 1.157257 ATTGTGTTGCACGCGAGACA 61.157 50.000 15.93 8.85 37.14 3.41
159 160 0.722469 CATTGTGTTGCACGCGAGAC 60.722 55.000 15.93 6.03 37.14 3.36
160 161 1.157257 ACATTGTGTTGCACGCGAGA 61.157 50.000 15.93 0.00 37.14 4.04
161 162 0.510790 TACATTGTGTTGCACGCGAG 59.489 50.000 15.93 5.97 37.14 5.03
162 163 0.233590 GTACATTGTGTTGCACGCGA 59.766 50.000 15.93 0.00 37.14 5.87
163 164 0.041751 TGTACATTGTGTTGCACGCG 60.042 50.000 3.53 3.53 37.14 6.01
164 165 1.394697 GTGTACATTGTGTTGCACGC 58.605 50.000 0.00 0.00 37.14 5.34
165 166 1.657839 CGTGTACATTGTGTTGCACG 58.342 50.000 18.01 18.01 44.72 5.34
166 167 3.225548 CATCGTGTACATTGTGTTGCAC 58.774 45.455 0.00 3.13 34.24 4.57
167 168 2.225255 CCATCGTGTACATTGTGTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
168 169 2.482336 TCCATCGTGTACATTGTGTTGC 59.518 45.455 0.00 0.00 0.00 4.17
169 170 4.391523 TCATCCATCGTGTACATTGTGTTG 59.608 41.667 0.00 0.00 0.00 3.33
170 171 4.574892 TCATCCATCGTGTACATTGTGTT 58.425 39.130 0.00 0.00 0.00 3.32
171 172 4.200838 TCATCCATCGTGTACATTGTGT 57.799 40.909 0.00 0.00 0.00 3.72
172 173 4.810491 TGATCATCCATCGTGTACATTGTG 59.190 41.667 0.00 0.00 33.61 3.33
173 174 4.811024 GTGATCATCCATCGTGTACATTGT 59.189 41.667 0.00 0.00 33.61 2.71
174 175 5.052481 AGTGATCATCCATCGTGTACATTG 58.948 41.667 0.00 0.00 33.61 2.82
175 176 5.282055 AGTGATCATCCATCGTGTACATT 57.718 39.130 0.00 0.00 33.61 2.71
176 177 4.944619 AGTGATCATCCATCGTGTACAT 57.055 40.909 0.00 0.00 33.61 2.29
177 178 5.845391 TTAGTGATCATCCATCGTGTACA 57.155 39.130 0.00 0.00 33.61 2.90
178 179 7.534085 TTTTTAGTGATCATCCATCGTGTAC 57.466 36.000 0.00 0.00 33.61 2.90
179 180 7.226523 CCATTTTTAGTGATCATCCATCGTGTA 59.773 37.037 0.00 0.00 33.61 2.90
180 181 6.038603 CCATTTTTAGTGATCATCCATCGTGT 59.961 38.462 0.00 0.00 33.61 4.49
181 182 6.432936 CCATTTTTAGTGATCATCCATCGTG 58.567 40.000 0.00 0.00 33.61 4.35
182 183 5.009010 GCCATTTTTAGTGATCATCCATCGT 59.991 40.000 0.00 0.00 33.61 3.73
183 184 5.008911 TGCCATTTTTAGTGATCATCCATCG 59.991 40.000 0.00 0.00 33.61 3.84
184 185 6.395426 TGCCATTTTTAGTGATCATCCATC 57.605 37.500 0.00 0.00 0.00 3.51
185 186 6.989155 ATGCCATTTTTAGTGATCATCCAT 57.011 33.333 0.00 0.00 0.00 3.41
186 187 7.094677 CGATATGCCATTTTTAGTGATCATCCA 60.095 37.037 0.00 0.00 0.00 3.41
187 188 7.094634 ACGATATGCCATTTTTAGTGATCATCC 60.095 37.037 0.00 0.00 0.00 3.51
188 189 7.810658 ACGATATGCCATTTTTAGTGATCATC 58.189 34.615 0.00 0.00 0.00 2.92
189 190 7.750229 ACGATATGCCATTTTTAGTGATCAT 57.250 32.000 0.00 0.00 0.00 2.45
190 191 8.669946 TTACGATATGCCATTTTTAGTGATCA 57.330 30.769 0.00 0.00 0.00 2.92
191 192 9.944663 TTTTACGATATGCCATTTTTAGTGATC 57.055 29.630 0.00 0.00 0.00 2.92
198 199 9.651913 AAGACATTTTTACGATATGCCATTTTT 57.348 25.926 0.00 0.00 0.00 1.94
209 210 9.974980 AACACCAATTTAAGACATTTTTACGAT 57.025 25.926 0.00 0.00 0.00 3.73
229 230 9.585099 GCAAATGATTAGAATGAATTAACACCA 57.415 29.630 0.00 0.00 0.00 4.17
230 231 9.585099 TGCAAATGATTAGAATGAATTAACACC 57.415 29.630 0.00 0.00 0.00 4.16
236 237 9.729281 ACCTTTTGCAAATGATTAGAATGAATT 57.271 25.926 22.76 0.00 0.00 2.17
237 238 9.374838 GACCTTTTGCAAATGATTAGAATGAAT 57.625 29.630 22.76 0.00 0.00 2.57
238 239 8.366401 TGACCTTTTGCAAATGATTAGAATGAA 58.634 29.630 22.76 0.00 0.00 2.57
239 240 7.894708 TGACCTTTTGCAAATGATTAGAATGA 58.105 30.769 22.76 0.00 0.00 2.57
240 241 8.537049 TTGACCTTTTGCAAATGATTAGAATG 57.463 30.769 22.76 8.75 0.00 2.67
241 242 9.558396 TTTTGACCTTTTGCAAATGATTAGAAT 57.442 25.926 22.76 5.67 34.36 2.40
242 243 8.954950 TTTTGACCTTTTGCAAATGATTAGAA 57.045 26.923 22.76 5.11 34.36 2.10
243 244 8.954950 TTTTTGACCTTTTGCAAATGATTAGA 57.045 26.923 22.76 2.29 34.36 2.10
279 280 9.768662 AAACTTGGTTAAATCTTAGTCGACTAA 57.231 29.630 30.65 30.65 36.99 2.24
280 281 9.768662 AAAACTTGGTTAAATCTTAGTCGACTA 57.231 29.630 21.25 21.25 0.00 2.59
281 282 8.672823 AAAACTTGGTTAAATCTTAGTCGACT 57.327 30.769 23.66 23.66 0.00 4.18
283 284 9.768662 ACTAAAACTTGGTTAAATCTTAGTCGA 57.231 29.630 0.00 0.00 0.00 4.20
290 291 9.403583 TCACTTGACTAAAACTTGGTTAAATCT 57.596 29.630 0.00 0.00 0.00 2.40
291 292 9.447040 GTCACTTGACTAAAACTTGGTTAAATC 57.553 33.333 1.92 0.00 41.65 2.17
292 293 8.962679 TGTCACTTGACTAAAACTTGGTTAAAT 58.037 29.630 10.63 0.00 44.99 1.40
293 294 8.338072 TGTCACTTGACTAAAACTTGGTTAAA 57.662 30.769 10.63 0.00 44.99 1.52
294 295 7.925043 TGTCACTTGACTAAAACTTGGTTAA 57.075 32.000 10.63 0.00 44.99 2.01
295 296 9.616156 TTATGTCACTTGACTAAAACTTGGTTA 57.384 29.630 10.63 0.00 44.99 2.85
296 297 8.514330 TTATGTCACTTGACTAAAACTTGGTT 57.486 30.769 10.63 0.00 44.99 3.67
297 298 8.691661 ATTATGTCACTTGACTAAAACTTGGT 57.308 30.769 10.63 0.00 44.99 3.67
301 302 9.448438 TGCATATTATGTCACTTGACTAAAACT 57.552 29.630 10.63 0.00 44.99 2.66
306 307 9.665719 TCTTTTGCATATTATGTCACTTGACTA 57.334 29.630 10.63 0.00 44.99 2.59
307 308 8.565896 TCTTTTGCATATTATGTCACTTGACT 57.434 30.769 10.63 0.00 44.99 3.41
308 309 8.668353 TCTCTTTTGCATATTATGTCACTTGAC 58.332 33.333 2.19 2.19 44.97 3.18
309 310 8.791327 TCTCTTTTGCATATTATGTCACTTGA 57.209 30.769 5.60 2.62 0.00 3.02
310 311 9.844790 TTTCTCTTTTGCATATTATGTCACTTG 57.155 29.630 5.60 0.00 0.00 3.16
312 313 9.453572 TCTTTCTCTTTTGCATATTATGTCACT 57.546 29.630 5.60 0.00 0.00 3.41
342 343 8.921670 GCATCCGTGTAATTTTTATTTTCAGTT 58.078 29.630 0.00 0.00 0.00 3.16
343 344 7.544217 GGCATCCGTGTAATTTTTATTTTCAGT 59.456 33.333 0.00 0.00 0.00 3.41
344 345 7.543868 TGGCATCCGTGTAATTTTTATTTTCAG 59.456 33.333 0.00 0.00 0.00 3.02
345 346 7.378966 TGGCATCCGTGTAATTTTTATTTTCA 58.621 30.769 0.00 0.00 0.00 2.69
346 347 7.820044 TGGCATCCGTGTAATTTTTATTTTC 57.180 32.000 0.00 0.00 0.00 2.29
347 348 7.148722 CGTTGGCATCCGTGTAATTTTTATTTT 60.149 33.333 0.00 0.00 0.00 1.82
348 349 6.309251 CGTTGGCATCCGTGTAATTTTTATTT 59.691 34.615 0.00 0.00 0.00 1.40
349 350 5.802956 CGTTGGCATCCGTGTAATTTTTATT 59.197 36.000 0.00 0.00 0.00 1.40
350 351 5.106078 ACGTTGGCATCCGTGTAATTTTTAT 60.106 36.000 11.28 0.00 35.69 1.40
351 352 4.215827 ACGTTGGCATCCGTGTAATTTTTA 59.784 37.500 11.28 0.00 35.69 1.52
352 353 3.004944 ACGTTGGCATCCGTGTAATTTTT 59.995 39.130 11.28 0.00 35.69 1.94
353 354 2.554893 ACGTTGGCATCCGTGTAATTTT 59.445 40.909 11.28 0.00 35.69 1.82
354 355 2.156098 ACGTTGGCATCCGTGTAATTT 58.844 42.857 11.28 0.00 35.69 1.82
355 356 1.816074 ACGTTGGCATCCGTGTAATT 58.184 45.000 11.28 0.00 35.69 1.40
356 357 2.676632 TACGTTGGCATCCGTGTAAT 57.323 45.000 19.13 0.00 37.91 1.89
357 358 2.452295 TTACGTTGGCATCCGTGTAA 57.548 45.000 19.13 7.03 37.91 2.41
358 359 2.452295 TTTACGTTGGCATCCGTGTA 57.548 45.000 19.13 7.55 37.91 2.90
359 360 1.816074 ATTTACGTTGGCATCCGTGT 58.184 45.000 19.13 6.07 37.91 4.49
360 361 2.911819 AATTTACGTTGGCATCCGTG 57.088 45.000 19.13 0.00 37.91 4.94
361 362 3.926821 AAAATTTACGTTGGCATCCGT 57.073 38.095 15.50 15.50 40.87 4.69
362 363 5.574082 TCATAAAATTTACGTTGGCATCCG 58.426 37.500 0.00 5.64 0.00 4.18
363 364 8.349983 ACTATCATAAAATTTACGTTGGCATCC 58.650 33.333 0.00 0.00 0.00 3.51
367 368 9.607285 CCATACTATCATAAAATTTACGTTGGC 57.393 33.333 0.00 0.00 0.00 4.52
382 383 9.128404 TCGTTAAGTGTTAGTCCATACTATCAT 57.872 33.333 0.00 0.00 39.14 2.45
383 384 8.510243 TCGTTAAGTGTTAGTCCATACTATCA 57.490 34.615 0.00 0.00 38.02 2.15
384 385 9.448294 CTTCGTTAAGTGTTAGTCCATACTATC 57.552 37.037 0.00 0.00 38.02 2.08
385 386 8.964772 ACTTCGTTAAGTGTTAGTCCATACTAT 58.035 33.333 0.00 0.00 44.40 2.12
386 387 8.340618 ACTTCGTTAAGTGTTAGTCCATACTA 57.659 34.615 0.00 0.00 44.40 1.82
387 388 7.224522 ACTTCGTTAAGTGTTAGTCCATACT 57.775 36.000 0.00 0.00 44.40 2.12
388 389 6.250104 CGACTTCGTTAAGTGTTAGTCCATAC 59.750 42.308 0.00 0.00 46.09 2.39
389 390 6.317088 CGACTTCGTTAAGTGTTAGTCCATA 58.683 40.000 0.00 0.00 46.09 2.74
390 391 5.159209 CGACTTCGTTAAGTGTTAGTCCAT 58.841 41.667 0.00 0.00 46.09 3.41
391 392 4.539870 CGACTTCGTTAAGTGTTAGTCCA 58.460 43.478 0.00 0.00 46.09 4.02
392 393 3.363128 GCGACTTCGTTAAGTGTTAGTCC 59.637 47.826 0.00 0.00 46.09 3.85
393 394 3.057350 CGCGACTTCGTTAAGTGTTAGTC 59.943 47.826 0.00 0.00 46.09 2.59
394 395 2.975851 CGCGACTTCGTTAAGTGTTAGT 59.024 45.455 0.00 0.00 46.09 2.24
395 396 2.340577 CCGCGACTTCGTTAAGTGTTAG 59.659 50.000 8.23 0.00 46.09 2.34
396 397 2.287547 ACCGCGACTTCGTTAAGTGTTA 60.288 45.455 8.23 0.00 46.09 2.41
397 398 1.134226 CCGCGACTTCGTTAAGTGTT 58.866 50.000 8.23 0.00 46.09 3.32
398 399 0.031178 ACCGCGACTTCGTTAAGTGT 59.969 50.000 8.23 0.00 46.09 3.55
399 400 0.706729 GACCGCGACTTCGTTAAGTG 59.293 55.000 8.23 0.00 46.09 3.16
401 402 0.453282 TCGACCGCGACTTCGTTAAG 60.453 55.000 8.23 0.00 42.51 1.85
402 403 1.573932 TCGACCGCGACTTCGTTAA 59.426 52.632 8.23 0.00 42.51 2.01
403 404 3.252964 TCGACCGCGACTTCGTTA 58.747 55.556 8.23 0.00 42.51 3.18
415 416 1.267806 TGTTGTTAGTCTCGGTCGACC 59.732 52.381 25.28 25.28 34.46 4.79
416 417 2.031333 AGTGTTGTTAGTCTCGGTCGAC 60.031 50.000 7.13 7.13 0.00 4.20
417 418 2.031420 CAGTGTTGTTAGTCTCGGTCGA 60.031 50.000 0.00 0.00 0.00 4.20
418 419 2.031420 TCAGTGTTGTTAGTCTCGGTCG 60.031 50.000 0.00 0.00 0.00 4.79
419 420 3.637998 TCAGTGTTGTTAGTCTCGGTC 57.362 47.619 0.00 0.00 0.00 4.79
420 421 4.395959 TTTCAGTGTTGTTAGTCTCGGT 57.604 40.909 0.00 0.00 0.00 4.69
421 422 5.728351 TTTTTCAGTGTTGTTAGTCTCGG 57.272 39.130 0.00 0.00 0.00 4.63
442 443 2.158827 GGGTGCAAACTGTCCCATTTTT 60.159 45.455 2.99 0.00 39.68 1.94
443 444 1.416030 GGGTGCAAACTGTCCCATTTT 59.584 47.619 2.99 0.00 39.68 1.82
444 445 1.047801 GGGTGCAAACTGTCCCATTT 58.952 50.000 2.99 0.00 39.68 2.32
445 446 1.178534 CGGGTGCAAACTGTCCCATT 61.179 55.000 8.42 0.00 39.87 3.16
446 447 1.603455 CGGGTGCAAACTGTCCCAT 60.603 57.895 8.42 0.00 39.87 4.00
447 448 2.203280 CGGGTGCAAACTGTCCCA 60.203 61.111 8.42 0.00 39.87 4.37
448 449 2.203294 ACGGGTGCAAACTGTCCC 60.203 61.111 0.00 0.00 36.82 4.46
449 450 3.340789 GACGGGTGCAAACTGTCC 58.659 61.111 16.86 0.69 38.09 4.02
450 451 2.604174 CGGACGGGTGCAAACTGTC 61.604 63.158 18.62 18.62 42.21 3.51
451 452 2.590575 CGGACGGGTGCAAACTGT 60.591 61.111 3.94 3.94 0.00 3.55
452 453 4.025401 GCGGACGGGTGCAAACTG 62.025 66.667 0.00 0.00 0.00 3.16
486 487 2.268076 GCACGGTGGATGTTGCCTT 61.268 57.895 10.60 0.00 0.00 4.35
489 490 1.210155 GAAGCACGGTGGATGTTGC 59.790 57.895 10.60 0.00 0.00 4.17
526 527 0.659427 CACAGTGCTGGTGTTGTCAG 59.341 55.000 4.11 0.00 35.49 3.51
527 528 1.375853 GCACAGTGCTGGTGTTGTCA 61.376 55.000 18.92 0.00 40.96 3.58
535 536 2.693762 CCGGATTGCACAGTGCTGG 61.694 63.158 25.83 15.14 45.31 4.85
537 538 3.058160 GCCGGATTGCACAGTGCT 61.058 61.111 25.83 7.07 45.31 4.40
596 620 4.379221 GACGTTCGTCGATCCCTG 57.621 61.111 9.50 0.00 42.86 4.45
719 765 1.221414 CGGCCGAATCATTCCTCTTC 58.779 55.000 24.07 0.00 0.00 2.87
720 766 0.815615 GCGGCCGAATCATTCCTCTT 60.816 55.000 33.48 0.00 0.00 2.85
721 767 1.227674 GCGGCCGAATCATTCCTCT 60.228 57.895 33.48 0.00 0.00 3.69
722 768 2.254464 GGCGGCCGAATCATTCCTC 61.254 63.158 33.48 6.40 0.00 3.71
723 769 2.203209 GGCGGCCGAATCATTCCT 60.203 61.111 33.48 0.00 0.00 3.36
860 950 2.359975 GGCGGGAGTGAACCTTGG 60.360 66.667 0.00 0.00 0.00 3.61
908 998 3.242543 TGTTAGCGCGTACTAAGTAGAGC 60.243 47.826 8.43 0.00 32.90 4.09
949 1039 1.520342 GTGATGAGCTGCTCCCGAC 60.520 63.158 25.61 15.05 0.00 4.79
976 1072 2.412977 CGTGCGCTCGCTATCTAATACT 60.413 50.000 19.50 0.00 42.51 2.12
977 1073 1.905687 CGTGCGCTCGCTATCTAATAC 59.094 52.381 19.50 0.00 42.51 1.89
978 1074 1.135774 CCGTGCGCTCGCTATCTAATA 60.136 52.381 25.19 0.00 42.51 0.98
994 1090 4.508128 CCCCGTCGTCATCCCGTG 62.508 72.222 0.00 0.00 0.00 4.94
997 1093 3.537874 CTCCCCCGTCGTCATCCC 61.538 72.222 0.00 0.00 0.00 3.85
998 1094 3.537874 CCTCCCCCGTCGTCATCC 61.538 72.222 0.00 0.00 0.00 3.51
999 1095 2.441532 TCCTCCCCCGTCGTCATC 60.442 66.667 0.00 0.00 0.00 2.92
1227 1364 4.814294 GAGTACTGGTGGCGCGGG 62.814 72.222 8.83 0.00 0.00 6.13
1453 1656 1.338973 TGCGTGTTAGAAGAACTCGGT 59.661 47.619 12.16 0.00 37.54 4.69
1474 1677 1.913951 ATCACCTGCTGGATGGCGAA 61.914 55.000 17.64 0.00 37.04 4.70
1476 1679 2.184830 CATCACCTGCTGGATGGCG 61.185 63.158 17.64 2.83 37.77 5.69
1557 1760 2.579738 GTGGAGGAGAAGTCGGCC 59.420 66.667 0.00 0.00 0.00 6.13
1652 1855 0.174845 ACGCGAATTAGCTGCCAGTA 59.825 50.000 15.93 0.00 34.40 2.74
1653 1856 0.174845 TACGCGAATTAGCTGCCAGT 59.825 50.000 15.93 1.62 34.40 4.00
1654 1857 0.855349 CTACGCGAATTAGCTGCCAG 59.145 55.000 15.93 0.00 34.40 4.85
1657 1860 0.861837 ATGCTACGCGAATTAGCTGC 59.138 50.000 22.70 10.18 42.21 5.25
1658 1861 4.169508 AGATATGCTACGCGAATTAGCTG 58.830 43.478 22.70 5.12 42.21 4.24
1659 1862 4.442375 AGATATGCTACGCGAATTAGCT 57.558 40.909 22.70 13.46 42.21 3.32
1753 1956 4.431131 ATCGGCTTGGTGGCAGGG 62.431 66.667 0.00 0.00 41.89 4.45
1761 1964 3.443045 GTGTGGGCATCGGCTTGG 61.443 66.667 0.00 0.00 40.87 3.61
1762 1965 3.803082 CGTGTGGGCATCGGCTTG 61.803 66.667 0.00 0.00 40.87 4.01
1763 1966 4.015406 TCGTGTGGGCATCGGCTT 62.015 61.111 0.00 0.00 40.87 4.35
1778 1981 0.108138 GGGAGAATGGTCACCTGTCG 60.108 60.000 0.00 0.00 35.03 4.35
1815 2018 3.249799 TGAAATGCTACTTGTGTTCGTGG 59.750 43.478 0.00 0.00 0.00 4.94
1816 2019 4.457810 CTGAAATGCTACTTGTGTTCGTG 58.542 43.478 0.00 0.00 0.00 4.35
1818 2021 3.482786 GCTGAAATGCTACTTGTGTTCG 58.517 45.455 0.00 0.00 0.00 3.95
1820 2023 2.226437 CGGCTGAAATGCTACTTGTGTT 59.774 45.455 0.00 0.00 0.00 3.32
1825 2028 3.887621 TCTACGGCTGAAATGCTACTT 57.112 42.857 0.00 0.00 0.00 2.24
1826 2029 3.887621 TTCTACGGCTGAAATGCTACT 57.112 42.857 0.00 0.00 0.00 2.57
1828 2031 4.181578 GAGTTTCTACGGCTGAAATGCTA 58.818 43.478 0.00 0.00 36.10 3.49
1863 2075 1.136147 CACGCCTGCTGCAGAAATC 59.864 57.895 30.10 14.48 41.33 2.17
1864 2076 2.986306 GCACGCCTGCTGCAGAAAT 61.986 57.895 30.10 11.99 40.63 2.17
1865 2077 3.663176 GCACGCCTGCTGCAGAAA 61.663 61.111 30.10 3.26 40.63 2.52
1885 2102 1.078426 CATCTTGTCACCCCCGTCC 60.078 63.158 0.00 0.00 0.00 4.79
1923 2144 3.716006 CCAGCACCAACAGCGACG 61.716 66.667 0.00 0.00 37.01 5.12
2003 2224 0.755686 ATTCTTCTCCTAGCTGCCCG 59.244 55.000 0.00 0.00 0.00 6.13
2015 2236 9.039870 CGCAAACTCATTCTATTCTATTCTTCT 57.960 33.333 0.00 0.00 0.00 2.85
2016 2237 8.821894 ACGCAAACTCATTCTATTCTATTCTTC 58.178 33.333 0.00 0.00 0.00 2.87
2017 2238 8.723942 ACGCAAACTCATTCTATTCTATTCTT 57.276 30.769 0.00 0.00 0.00 2.52
2018 2239 8.607459 CAACGCAAACTCATTCTATTCTATTCT 58.393 33.333 0.00 0.00 0.00 2.40
2019 2240 7.374491 GCAACGCAAACTCATTCTATTCTATTC 59.626 37.037 0.00 0.00 0.00 1.75
2085 2313 5.940470 ACTGGCTACCAAAACTAATCTGAAG 59.060 40.000 0.00 0.00 30.80 3.02
2138 2370 2.697761 GCACTGCAGCCATGGTGAG 61.698 63.158 15.27 11.39 32.22 3.51
2255 2492 4.471726 GCAGCAGACGCATGTGGC 62.472 66.667 11.65 7.81 42.27 5.01
2302 2549 1.065551 ACTTGAACGCTTGCAAACCTC 59.934 47.619 0.00 0.00 0.00 3.85
2318 2565 0.679505 TGGACGGAGAGGTTGACTTG 59.320 55.000 0.00 0.00 0.00 3.16
2337 2584 0.606401 CAAAGATGGTGGTGTCGCCT 60.606 55.000 3.62 0.00 43.72 5.52
2338 2585 0.605319 TCAAAGATGGTGGTGTCGCC 60.605 55.000 0.00 0.00 43.64 5.54
2339 2586 0.798776 CTCAAAGATGGTGGTGTCGC 59.201 55.000 0.00 0.00 0.00 5.19
2340 2587 0.798776 GCTCAAAGATGGTGGTGTCG 59.201 55.000 0.00 0.00 0.00 4.35
2341 2588 1.168714 GGCTCAAAGATGGTGGTGTC 58.831 55.000 0.00 0.00 0.00 3.67
2342 2589 0.606401 CGGCTCAAAGATGGTGGTGT 60.606 55.000 0.00 0.00 0.00 4.16
2343 2590 0.321564 TCGGCTCAAAGATGGTGGTG 60.322 55.000 0.00 0.00 0.00 4.17
2344 2591 0.620556 ATCGGCTCAAAGATGGTGGT 59.379 50.000 0.00 0.00 0.00 4.16
2345 2592 1.019673 CATCGGCTCAAAGATGGTGG 58.980 55.000 0.00 0.00 40.23 4.61
2346 2593 1.938577 CTCATCGGCTCAAAGATGGTG 59.061 52.381 5.73 0.00 43.13 4.17
2360 2607 3.551863 GGAGTAGATGCTTCCACTCATCG 60.552 52.174 23.03 0.00 42.76 3.84
2366 2613 3.295973 AGAGAGGAGTAGATGCTTCCAC 58.704 50.000 0.00 0.00 0.00 4.02
2381 2628 8.701895 TCTACTAGTTCTAGAAGAGAAGAGAGG 58.298 40.741 17.42 4.70 45.06 3.69
2405 2652 7.661027 GCTCTGAGCCTTCTATTCAAAATATCT 59.339 37.037 18.80 0.00 34.48 1.98
2406 2653 7.443575 TGCTCTGAGCCTTCTATTCAAAATATC 59.556 37.037 25.61 0.00 41.51 1.63
2424 2671 1.783284 TACGTGTTGCTTGCTCTGAG 58.217 50.000 0.00 0.00 0.00 3.35
2515 2766 1.547372 ACAACGATACGCCCTAGTTGT 59.453 47.619 6.47 6.47 46.96 3.32
2530 2781 3.561503 TGACAATCACTCTCGTACAACG 58.438 45.455 0.00 0.00 44.19 4.10
2536 2787 1.737029 CGGCATGACAATCACTCTCGT 60.737 52.381 0.00 0.00 0.00 4.18
2543 2794 1.339291 TGCAAAACGGCATGACAATCA 59.661 42.857 0.00 0.00 39.25 2.57
2544 2795 1.987770 CTGCAAAACGGCATGACAATC 59.012 47.619 0.00 0.00 43.97 2.67
2549 2800 2.274645 CCCCTGCAAAACGGCATGA 61.275 57.895 0.00 0.00 43.97 3.07
2563 2814 2.036387 GGTGTTTTTACAAGTGCCCCT 58.964 47.619 0.00 0.00 0.00 4.79
2569 2820 5.587443 GGTAGAGTGTGGTGTTTTTACAAGT 59.413 40.000 0.00 0.00 0.00 3.16
2581 2832 1.085715 AGAGGAGGGTAGAGTGTGGT 58.914 55.000 0.00 0.00 0.00 4.16
2585 2836 8.116669 TCCATTATATAAGAGGAGGGTAGAGTG 58.883 40.741 12.94 0.00 0.00 3.51
2604 2855 6.371278 ACAAAAGATCTGCCTCATCCATTAT 58.629 36.000 0.00 0.00 0.00 1.28
2605 2856 5.759059 ACAAAAGATCTGCCTCATCCATTA 58.241 37.500 0.00 0.00 0.00 1.90
2628 2879 9.337396 TGCAGTTAGAGACTTTCTTTTATGAAA 57.663 29.630 0.00 0.00 36.10 2.69
2629 2880 8.902540 TGCAGTTAGAGACTTTCTTTTATGAA 57.097 30.769 0.00 0.00 36.10 2.57
2632 2883 7.939588 ACCTTGCAGTTAGAGACTTTCTTTTAT 59.060 33.333 0.00 0.00 36.10 1.40
2633 2884 7.280356 ACCTTGCAGTTAGAGACTTTCTTTTA 58.720 34.615 0.00 0.00 36.10 1.52
2634 2885 6.122964 ACCTTGCAGTTAGAGACTTTCTTTT 58.877 36.000 0.00 0.00 36.10 2.27
2635 2886 5.685728 ACCTTGCAGTTAGAGACTTTCTTT 58.314 37.500 0.00 0.00 36.10 2.52
2638 2892 7.492352 TTTTACCTTGCAGTTAGAGACTTTC 57.508 36.000 0.00 0.00 36.10 2.62
2664 2918 7.924947 GTCCTAGTTGTTTGTAGTTACTCAGTT 59.075 37.037 0.00 0.00 0.00 3.16
2665 2919 7.287235 AGTCCTAGTTGTTTGTAGTTACTCAGT 59.713 37.037 0.00 0.00 0.00 3.41
2677 2931 6.371809 TTGCTGTTTAGTCCTAGTTGTTTG 57.628 37.500 0.00 0.00 0.00 2.93
2684 2938 5.064071 GCTAAGCTTTGCTGTTTAGTCCTAG 59.936 44.000 23.12 1.82 39.62 3.02
2757 3170 5.689819 ACACGACAAAAATAAGAGATGTGC 58.310 37.500 0.00 0.00 0.00 4.57
2758 3171 7.855409 TCAAACACGACAAAAATAAGAGATGTG 59.145 33.333 0.00 0.00 0.00 3.21
2759 3172 7.925993 TCAAACACGACAAAAATAAGAGATGT 58.074 30.769 0.00 0.00 0.00 3.06
2769 3182 5.950883 TGTAACCATCAAACACGACAAAAA 58.049 33.333 0.00 0.00 0.00 1.94
2789 3202 1.669760 CGCGCCACTCCCTTTTGTA 60.670 57.895 0.00 0.00 0.00 2.41
2885 3302 0.976590 TCTCTCTCCTCCCGTCGAGA 60.977 60.000 0.00 0.00 41.63 4.04
2886 3303 0.107831 ATCTCTCTCCTCCCGTCGAG 59.892 60.000 0.00 0.00 38.46 4.04
2887 3304 0.107081 GATCTCTCTCCTCCCGTCGA 59.893 60.000 0.00 0.00 0.00 4.20
2888 3305 1.225376 CGATCTCTCTCCTCCCGTCG 61.225 65.000 0.00 0.00 0.00 5.12
2889 3306 1.512156 GCGATCTCTCTCCTCCCGTC 61.512 65.000 0.00 0.00 0.00 4.79
2890 3307 1.527380 GCGATCTCTCTCCTCCCGT 60.527 63.158 0.00 0.00 0.00 5.28
2891 3308 2.612567 CGCGATCTCTCTCCTCCCG 61.613 68.421 0.00 0.00 0.00 5.14
2892 3309 2.914908 GCGCGATCTCTCTCCTCCC 61.915 68.421 12.10 0.00 0.00 4.30
2893 3310 2.128853 CTGCGCGATCTCTCTCCTCC 62.129 65.000 12.10 0.00 0.00 4.30
2894 3311 1.163420 TCTGCGCGATCTCTCTCCTC 61.163 60.000 12.10 0.00 0.00 3.71
2895 3312 1.153066 TCTGCGCGATCTCTCTCCT 60.153 57.895 12.10 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.