Multiple sequence alignment - TraesCS4A01G039200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G039200 chr4A 100.000 3921 0 0 463 4383 31596776 31592856 0.000000e+00 7241.0
1 TraesCS4A01G039200 chr4A 95.018 1646 73 6 744 2381 31621555 31623199 0.000000e+00 2577.0
2 TraesCS4A01G039200 chr4A 88.832 788 56 14 3093 3859 31623595 31624371 0.000000e+00 939.0
3 TraesCS4A01G039200 chr4A 93.899 377 23 0 2657 3033 31623221 31623597 1.770000e-158 569.0
4 TraesCS4A01G039200 chr4A 81.437 167 23 5 2105 2264 12626320 12626155 3.560000e-26 130.0
5 TraesCS4A01G039200 chr4A 100.000 70 0 0 1 70 31597238 31597169 3.560000e-26 130.0
6 TraesCS4A01G039200 chr4A 91.667 60 3 2 688 746 31621475 31621533 1.010000e-11 82.4
7 TraesCS4A01G039200 chr4B 91.882 1971 105 23 463 2381 538672923 538674890 0.000000e+00 2702.0
8 TraesCS4A01G039200 chr4B 92.818 1643 89 19 744 2381 538270316 538268698 0.000000e+00 2353.0
9 TraesCS4A01G039200 chr4B 94.723 1156 57 4 2657 3810 538674912 538676065 0.000000e+00 1794.0
10 TraesCS4A01G039200 chr4B 84.977 1298 126 35 670 1917 538384982 538386260 0.000000e+00 1253.0
11 TraesCS4A01G039200 chr4B 89.354 789 51 17 3093 3859 538268122 538267345 0.000000e+00 961.0
12 TraesCS4A01G039200 chr4B 86.108 799 101 8 907 1702 538370641 538371432 0.000000e+00 852.0
13 TraesCS4A01G039200 chr4B 79.856 973 172 17 744 1702 568410090 568411052 0.000000e+00 689.0
14 TraesCS4A01G039200 chr4B 94.118 357 21 0 2657 3013 538268676 538268320 1.070000e-150 544.0
15 TraesCS4A01G039200 chr4B 88.698 407 40 4 2720 3124 538372430 538372832 3.940000e-135 492.0
16 TraesCS4A01G039200 chr4B 82.195 410 44 12 1989 2381 538386260 538386657 4.230000e-85 326.0
17 TraesCS4A01G039200 chr4B 83.626 171 22 5 2097 2264 568411065 568411232 5.870000e-34 156.0
18 TraesCS4A01G039200 chr4B 89.831 59 5 1 688 746 538270395 538270338 1.690000e-09 75.0
19 TraesCS4A01G039200 chr4D 95.055 1638 80 1 744 2381 436836797 436838433 0.000000e+00 2575.0
20 TraesCS4A01G039200 chr4D 94.242 1650 81 8 744 2381 436379086 436377439 0.000000e+00 2508.0
21 TraesCS4A01G039200 chr4D 88.669 962 105 2 744 1702 436697129 436698089 0.000000e+00 1170.0
22 TraesCS4A01G039200 chr4D 80.455 967 162 19 744 1698 455289463 455290414 0.000000e+00 713.0
23 TraesCS4A01G039200 chr4D 93.454 443 26 3 3420 3859 436376659 436376217 0.000000e+00 654.0
24 TraesCS4A01G039200 chr4D 83.221 745 85 25 3125 3837 436713613 436714349 0.000000e+00 647.0
25 TraesCS4A01G039200 chr4D 92.875 407 27 2 3455 3859 436874057 436874463 1.360000e-164 590.0
26 TraesCS4A01G039200 chr4D 94.430 377 21 0 2657 3033 436377417 436377041 8.170000e-162 580.0
27 TraesCS4A01G039200 chr4D 94.817 328 17 0 2669 2996 436862541 436862868 3.020000e-141 512.0
28 TraesCS4A01G039200 chr4D 81.086 571 79 16 1830 2381 436698204 436698764 3.130000e-116 429.0
29 TraesCS4A01G039200 chr4D 96.694 242 7 1 2380 2620 484764650 484764409 6.830000e-108 401.0
30 TraesCS4A01G039200 chr4D 96.680 241 7 1 2380 2619 30506666 30506426 2.460000e-107 399.0
31 TraesCS4A01G039200 chr4D 79.335 571 106 8 740 1307 455318643 455319204 1.480000e-104 390.0
32 TraesCS4A01G039200 chr4D 86.059 373 31 9 3093 3449 436872653 436873020 8.900000e-102 381.0
33 TraesCS4A01G039200 chr4D 90.909 242 21 1 3093 3334 436377043 436376803 1.520000e-84 324.0
34 TraesCS4A01G039200 chr4D 86.288 299 17 13 463 739 436812623 436812919 1.980000e-78 303.0
35 TraesCS4A01G039200 chr4D 87.624 202 22 1 2720 2921 436698857 436699055 9.480000e-57 231.0
36 TraesCS4A01G039200 chr4D 86.420 162 21 1 3677 3837 436722133 436722294 4.510000e-40 176.0
37 TraesCS4A01G039200 chr4D 94.915 59 2 1 688 746 436379165 436379108 1.680000e-14 91.6
38 TraesCS4A01G039200 chr6B 93.839 422 24 2 3861 4282 697681787 697682206 6.180000e-178 634.0
39 TraesCS4A01G039200 chr6B 90.566 424 15 3 3867 4282 18170176 18170582 4.990000e-149 538.0
40 TraesCS4A01G039200 chr6B 75.000 284 43 21 1811 2073 236572474 236572750 6.000000e-19 106.0
41 TraesCS4A01G039200 chr6B 80.833 120 15 3 3926 4045 18170276 18170387 2.170000e-13 87.9
42 TraesCS4A01G039200 chr1B 93.750 416 25 1 3867 4282 17045659 17045245 1.340000e-174 623.0
43 TraesCS4A01G039200 chr1D 92.399 421 26 2 3867 4282 408691012 408690593 2.920000e-166 595.0
44 TraesCS4A01G039200 chr1D 95.935 246 9 1 2379 2623 16232234 16231989 8.830000e-107 398.0
45 TraesCS4A01G039200 chr3B 90.385 416 21 5 3867 4282 71451125 71450729 3.000000e-146 529.0
46 TraesCS4A01G039200 chr3B 78.438 320 65 4 3867 4184 747532468 747532151 5.750000e-49 206.0
47 TraesCS4A01G039200 chr3B 85.714 91 10 3 4007 4095 706851118 706851207 4.670000e-15 93.5
48 TraesCS4A01G039200 chr6A 92.105 304 24 0 3867 4170 557554486 557554183 3.130000e-116 429.0
49 TraesCS4A01G039200 chr6A 91.099 191 12 1 4097 4282 557554181 557553991 2.020000e-63 254.0
50 TraesCS4A01G039200 chr3D 96.327 245 8 1 2379 2622 94886844 94886600 6.830000e-108 401.0
51 TraesCS4A01G039200 chr3D 96.281 242 8 1 2380 2620 327381717 327381958 3.180000e-106 396.0
52 TraesCS4A01G039200 chr3D 95.565 248 10 1 2377 2623 611242278 611242031 3.180000e-106 396.0
53 TraesCS4A01G039200 chr3D 97.059 34 1 0 3867 3900 18876871 18876904 1.700000e-04 58.4
54 TraesCS4A01G039200 chr7A 96.680 241 7 1 2379 2618 362740384 362740144 2.460000e-107 399.0
55 TraesCS4A01G039200 chr5D 95.951 247 8 2 2378 2622 65758328 65758574 2.460000e-107 399.0
56 TraesCS4A01G039200 chr2A 95.582 249 9 2 2376 2623 14454396 14454149 8.830000e-107 398.0
57 TraesCS4A01G039200 chr2A 92.969 128 6 3 4256 4383 574199064 574198940 2.690000e-42 183.0
58 TraesCS4A01G039200 chr5A 80.119 337 64 2 3867 4200 600990701 600991037 9.410000e-62 248.0
59 TraesCS4A01G039200 chr7D 96.552 116 3 1 4268 4383 551640910 551641024 1.610000e-44 191.0
60 TraesCS4A01G039200 chr2D 96.552 116 3 1 4268 4383 265417143 265417257 1.610000e-44 191.0
61 TraesCS4A01G039200 chr2D 91.729 133 6 4 4255 4383 629666478 629666609 3.480000e-41 180.0
62 TraesCS4A01G039200 chrUn 94.262 122 6 1 4262 4383 21506428 21506548 7.490000e-43 185.0
63 TraesCS4A01G039200 chr1A 92.308 130 7 3 4257 4383 564529872 564530001 9.680000e-42 182.0
64 TraesCS4A01G039200 chr6D 91.603 131 9 2 4255 4383 427200419 427200549 3.480000e-41 180.0
65 TraesCS4A01G039200 chr6D 91.603 131 9 2 4255 4383 427208201 427208331 3.480000e-41 180.0
66 TraesCS4A01G039200 chr3A 92.188 128 8 2 4258 4383 658694729 658694602 3.480000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G039200 chr4A 31592856 31597238 4382 True 3685.50 7241 100.00000 1 4383 2 chr4A.!!$R2 4382
1 TraesCS4A01G039200 chr4A 31621475 31624371 2896 False 1041.85 2577 92.35400 688 3859 4 chr4A.!!$F1 3171
2 TraesCS4A01G039200 chr4B 538672923 538676065 3142 False 2248.00 2702 93.30250 463 3810 2 chr4B.!!$F3 3347
3 TraesCS4A01G039200 chr4B 538267345 538270395 3050 True 983.25 2353 91.53025 688 3859 4 chr4B.!!$R1 3171
4 TraesCS4A01G039200 chr4B 538384982 538386657 1675 False 789.50 1253 83.58600 670 2381 2 chr4B.!!$F2 1711
5 TraesCS4A01G039200 chr4B 538370641 538372832 2191 False 672.00 852 87.40300 907 3124 2 chr4B.!!$F1 2217
6 TraesCS4A01G039200 chr4B 568410090 568411232 1142 False 422.50 689 81.74100 744 2264 2 chr4B.!!$F4 1520
7 TraesCS4A01G039200 chr4D 436836797 436838433 1636 False 2575.00 2575 95.05500 744 2381 1 chr4D.!!$F4 1637
8 TraesCS4A01G039200 chr4D 436376217 436379165 2948 True 831.52 2508 93.59000 688 3859 5 chr4D.!!$R3 3171
9 TraesCS4A01G039200 chr4D 455289463 455290414 951 False 713.00 713 80.45500 744 1698 1 chr4D.!!$F6 954
10 TraesCS4A01G039200 chr4D 436713613 436714349 736 False 647.00 647 83.22100 3125 3837 1 chr4D.!!$F1 712
11 TraesCS4A01G039200 chr4D 436697129 436699055 1926 False 610.00 1170 85.79300 744 2921 3 chr4D.!!$F8 2177
12 TraesCS4A01G039200 chr4D 436872653 436874463 1810 False 485.50 590 89.46700 3093 3859 2 chr4D.!!$F9 766
13 TraesCS4A01G039200 chr4D 455318643 455319204 561 False 390.00 390 79.33500 740 1307 1 chr4D.!!$F7 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 651 0.318699 TCTTGAACTCGTCCAGCGTG 60.319 55.0 0.0 0.0 42.13 5.34 F
1735 2078 0.037590 AGTTCACGCCCAGCCATAAA 59.962 50.0 0.0 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 2970 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.0 4.18 5.6 42.35 6.13 R
3502 5299 0.824109 AGATGCGGCACTACAAGCTA 59.176 50.0 4.03 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.417754 CATCTAGATGTGCCATCCATACT 57.582 43.478 22.42 0.00 34.23 2.12
34 35 6.535963 CATCTAGATGTGCCATCCATACTA 57.464 41.667 22.42 0.00 34.23 1.82
35 36 6.939622 CATCTAGATGTGCCATCCATACTAA 58.060 40.000 22.42 0.00 34.23 2.24
36 37 7.563020 CATCTAGATGTGCCATCCATACTAAT 58.437 38.462 22.42 0.00 34.23 1.73
37 38 7.559335 TCTAGATGTGCCATCCATACTAATT 57.441 36.000 10.46 0.00 0.00 1.40
38 39 7.615403 TCTAGATGTGCCATCCATACTAATTC 58.385 38.462 10.46 0.00 0.00 2.17
39 40 6.445451 AGATGTGCCATCCATACTAATTCT 57.555 37.500 10.46 0.00 0.00 2.40
40 41 6.845908 AGATGTGCCATCCATACTAATTCTT 58.154 36.000 10.46 0.00 0.00 2.52
41 42 7.293073 AGATGTGCCATCCATACTAATTCTTT 58.707 34.615 10.46 0.00 0.00 2.52
42 43 8.439971 AGATGTGCCATCCATACTAATTCTTTA 58.560 33.333 10.46 0.00 0.00 1.85
43 44 7.801716 TGTGCCATCCATACTAATTCTTTAC 57.198 36.000 0.00 0.00 0.00 2.01
44 45 7.573710 TGTGCCATCCATACTAATTCTTTACT 58.426 34.615 0.00 0.00 0.00 2.24
45 46 7.498900 TGTGCCATCCATACTAATTCTTTACTG 59.501 37.037 0.00 0.00 0.00 2.74
46 47 7.715249 GTGCCATCCATACTAATTCTTTACTGA 59.285 37.037 0.00 0.00 0.00 3.41
47 48 8.271458 TGCCATCCATACTAATTCTTTACTGAA 58.729 33.333 0.00 0.00 0.00 3.02
48 49 9.120538 GCCATCCATACTAATTCTTTACTGAAA 57.879 33.333 0.00 0.00 0.00 2.69
532 533 3.611057 GCCGGTTGTCGTGTATAGATAGG 60.611 52.174 1.90 0.00 37.11 2.57
547 548 9.905713 TGTATAGATAGGCACTGAAGAAAAATT 57.094 29.630 0.00 0.00 41.52 1.82
571 573 8.894768 TTAACTCTTCTTTTCCTTTCTCTCAG 57.105 34.615 0.00 0.00 0.00 3.35
572 574 6.493189 ACTCTTCTTTTCCTTTCTCTCAGT 57.507 37.500 0.00 0.00 0.00 3.41
573 575 6.287525 ACTCTTCTTTTCCTTTCTCTCAGTG 58.712 40.000 0.00 0.00 0.00 3.66
575 577 6.653989 TCTTCTTTTCCTTTCTCTCAGTGTT 58.346 36.000 0.00 0.00 0.00 3.32
576 578 6.763610 TCTTCTTTTCCTTTCTCTCAGTGTTC 59.236 38.462 0.00 0.00 0.00 3.18
577 579 6.240549 TCTTTTCCTTTCTCTCAGTGTTCT 57.759 37.500 0.00 0.00 0.00 3.01
578 580 7.361457 TCTTTTCCTTTCTCTCAGTGTTCTA 57.639 36.000 0.00 0.00 0.00 2.10
580 582 8.432805 TCTTTTCCTTTCTCTCAGTGTTCTATT 58.567 33.333 0.00 0.00 0.00 1.73
594 618 8.704668 TCAGTGTTCTATTTTATGCATCTCCTA 58.295 33.333 0.19 0.00 0.00 2.94
626 650 0.387929 TTCTTGAACTCGTCCAGCGT 59.612 50.000 0.00 0.00 42.13 5.07
627 651 0.318699 TCTTGAACTCGTCCAGCGTG 60.319 55.000 0.00 0.00 42.13 5.34
635 659 2.028484 GTCCAGCGTGTCGTCCAA 59.972 61.111 0.00 0.00 0.00 3.53
654 678 2.391616 ATTCAGACTTGAGCATGCGA 57.608 45.000 13.01 0.00 34.15 5.10
709 733 5.419155 TCTCTACTAACCTTCTGACCATGTG 59.581 44.000 0.00 0.00 0.00 3.21
751 799 4.965532 ACCCTTCTTATGATGTGCTAGAGT 59.034 41.667 0.00 0.00 0.00 3.24
784 832 1.280421 GCACTTCCTCTTCCTCCACAT 59.720 52.381 0.00 0.00 0.00 3.21
876 924 2.642311 TCCTTCTGGTTGGCATCTACAA 59.358 45.455 0.00 0.00 34.23 2.41
925 973 5.476614 GTTCTTTCCACACGTATCCTAGTT 58.523 41.667 0.00 0.00 0.00 2.24
1713 2056 9.166173 CATCTCATCCACTGTTTAATGTCTAAA 57.834 33.333 0.00 0.00 0.00 1.85
1735 2078 0.037590 AGTTCACGCCCAGCCATAAA 59.962 50.000 0.00 0.00 0.00 1.40
1759 2102 8.474710 AAGTAGTGACTTTCTAGTTCCTACAA 57.525 34.615 0.00 0.00 43.70 2.41
1849 2200 9.653287 CACCTTAGATAACTTCTGTTCATACAA 57.347 33.333 0.00 0.00 37.59 2.41
1908 2259 2.419297 GCTCCTTGTGTCATAGTCCCAG 60.419 54.545 0.00 0.00 0.00 4.45
1926 2277 7.467650 AGTCCCAGGCTTTACTAAAGTTTAAT 58.532 34.615 9.77 0.00 40.64 1.40
1929 2280 9.234827 TCCCAGGCTTTACTAAAGTTTAATTAC 57.765 33.333 9.77 0.00 40.64 1.89
2094 2462 5.902613 TCTGCCCTTCATCTTATTTGTTG 57.097 39.130 0.00 0.00 0.00 3.33
2159 2537 9.554724 CCATATGTATTGACTTTTTACACACAC 57.445 33.333 1.24 0.00 0.00 3.82
2254 2632 3.692101 TGATAAATACAAAGGTGGGCACG 59.308 43.478 0.00 0.00 0.00 5.34
2278 2656 1.361668 CTCGCGCTTACCATGTTGCT 61.362 55.000 5.56 0.00 0.00 3.91
2337 2721 2.361119 TGTACCTGCATACATCGAGGAC 59.639 50.000 3.06 0.00 29.97 3.85
2381 2765 6.495847 AGGAGGAGGCTAGGTTAAGATATAC 58.504 44.000 0.00 0.00 0.00 1.47
2382 2766 6.278479 AGGAGGAGGCTAGGTTAAGATATACT 59.722 42.308 0.00 0.00 0.00 2.12
2383 2767 6.604396 GGAGGAGGCTAGGTTAAGATATACTC 59.396 46.154 0.00 0.00 0.00 2.59
2384 2768 6.495847 AGGAGGCTAGGTTAAGATATACTCC 58.504 44.000 0.00 0.00 40.71 3.85
2385 2769 5.657745 GGAGGCTAGGTTAAGATATACTCCC 59.342 48.000 0.00 0.00 35.83 4.30
2386 2770 6.486891 AGGCTAGGTTAAGATATACTCCCT 57.513 41.667 0.00 0.00 0.00 4.20
2387 2771 6.495847 AGGCTAGGTTAAGATATACTCCCTC 58.504 44.000 0.00 0.00 0.00 4.30
2388 2772 5.657745 GGCTAGGTTAAGATATACTCCCTCC 59.342 48.000 0.00 0.00 0.00 4.30
2389 2773 5.357596 GCTAGGTTAAGATATACTCCCTCCG 59.642 48.000 0.00 0.00 0.00 4.63
2390 2774 5.336491 AGGTTAAGATATACTCCCTCCGT 57.664 43.478 0.00 0.00 0.00 4.69
2391 2775 5.713807 AGGTTAAGATATACTCCCTCCGTT 58.286 41.667 0.00 0.00 0.00 4.44
2392 2776 5.774184 AGGTTAAGATATACTCCCTCCGTTC 59.226 44.000 0.00 0.00 0.00 3.95
2393 2777 5.047448 GGTTAAGATATACTCCCTCCGTTCC 60.047 48.000 0.00 0.00 0.00 3.62
2394 2778 3.897657 AGATATACTCCCTCCGTTCCA 57.102 47.619 0.00 0.00 0.00 3.53
2395 2779 3.498334 AGATATACTCCCTCCGTTCCAC 58.502 50.000 0.00 0.00 0.00 4.02
2396 2780 2.832643 TATACTCCCTCCGTTCCACA 57.167 50.000 0.00 0.00 0.00 4.17
2397 2781 1.946984 ATACTCCCTCCGTTCCACAA 58.053 50.000 0.00 0.00 0.00 3.33
2398 2782 1.946984 TACTCCCTCCGTTCCACAAT 58.053 50.000 0.00 0.00 0.00 2.71
2399 2783 0.324943 ACTCCCTCCGTTCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
2400 2784 0.324943 CTCCCTCCGTTCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
2401 2785 1.553248 CTCCCTCCGTTCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
2402 2786 1.553248 TCCCTCCGTTCCACAATGTAG 59.447 52.381 0.00 0.00 0.00 2.74
2403 2787 1.278127 CCCTCCGTTCCACAATGTAGT 59.722 52.381 0.00 0.00 0.00 2.73
2404 2788 2.346803 CCTCCGTTCCACAATGTAGTG 58.653 52.381 0.00 0.00 39.21 2.74
2405 2789 1.732259 CTCCGTTCCACAATGTAGTGC 59.268 52.381 0.00 0.00 38.18 4.40
2406 2790 1.346395 TCCGTTCCACAATGTAGTGCT 59.654 47.619 0.00 0.00 38.18 4.40
2407 2791 2.151202 CCGTTCCACAATGTAGTGCTT 58.849 47.619 0.00 0.00 38.18 3.91
2408 2792 2.159627 CCGTTCCACAATGTAGTGCTTC 59.840 50.000 0.00 0.00 38.18 3.86
2409 2793 2.159627 CGTTCCACAATGTAGTGCTTCC 59.840 50.000 0.00 0.00 38.18 3.46
2410 2794 3.412386 GTTCCACAATGTAGTGCTTCCT 58.588 45.455 0.00 0.00 38.18 3.36
2411 2795 3.334583 TCCACAATGTAGTGCTTCCTC 57.665 47.619 0.00 0.00 38.18 3.71
2412 2796 2.906389 TCCACAATGTAGTGCTTCCTCT 59.094 45.455 0.00 0.00 38.18 3.69
2413 2797 4.093743 TCCACAATGTAGTGCTTCCTCTA 58.906 43.478 0.00 0.00 38.18 2.43
2414 2798 4.716784 TCCACAATGTAGTGCTTCCTCTAT 59.283 41.667 0.00 0.00 38.18 1.98
2415 2799 5.053145 CCACAATGTAGTGCTTCCTCTATC 58.947 45.833 0.00 0.00 38.18 2.08
2416 2800 5.163364 CCACAATGTAGTGCTTCCTCTATCT 60.163 44.000 0.00 0.00 38.18 1.98
2417 2801 5.982516 CACAATGTAGTGCTTCCTCTATCTC 59.017 44.000 0.00 0.00 32.04 2.75
2418 2802 5.069781 ACAATGTAGTGCTTCCTCTATCTCC 59.930 44.000 0.00 0.00 0.00 3.71
2419 2803 3.215151 TGTAGTGCTTCCTCTATCTCCG 58.785 50.000 0.00 0.00 0.00 4.63
2420 2804 2.445682 AGTGCTTCCTCTATCTCCGT 57.554 50.000 0.00 0.00 0.00 4.69
2421 2805 2.028130 AGTGCTTCCTCTATCTCCGTG 58.972 52.381 0.00 0.00 0.00 4.94
2422 2806 0.747255 TGCTTCCTCTATCTCCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
2423 2807 1.036707 GCTTCCTCTATCTCCGTGCT 58.963 55.000 0.00 0.00 0.00 4.40
2424 2808 1.410882 GCTTCCTCTATCTCCGTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
2425 2809 2.544903 GCTTCCTCTATCTCCGTGCTTC 60.545 54.545 0.00 0.00 0.00 3.86
2426 2810 2.437085 TCCTCTATCTCCGTGCTTCA 57.563 50.000 0.00 0.00 0.00 3.02
2427 2811 2.735151 TCCTCTATCTCCGTGCTTCAA 58.265 47.619 0.00 0.00 0.00 2.69
2428 2812 2.427453 TCCTCTATCTCCGTGCTTCAAC 59.573 50.000 0.00 0.00 0.00 3.18
2429 2813 2.428890 CCTCTATCTCCGTGCTTCAACT 59.571 50.000 0.00 0.00 0.00 3.16
2430 2814 3.118956 CCTCTATCTCCGTGCTTCAACTT 60.119 47.826 0.00 0.00 0.00 2.66
2431 2815 4.499183 CTCTATCTCCGTGCTTCAACTTT 58.501 43.478 0.00 0.00 0.00 2.66
2432 2816 4.245660 TCTATCTCCGTGCTTCAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
2433 2817 2.613026 TCTCCGTGCTTCAACTTTGA 57.387 45.000 0.00 0.00 34.92 2.69
2434 2818 2.210116 TCTCCGTGCTTCAACTTTGAC 58.790 47.619 0.00 0.00 36.83 3.18
2435 2819 1.264288 CTCCGTGCTTCAACTTTGACC 59.736 52.381 0.00 0.00 36.83 4.02
2436 2820 1.134220 TCCGTGCTTCAACTTTGACCT 60.134 47.619 0.00 0.00 36.83 3.85
2437 2821 2.103432 TCCGTGCTTCAACTTTGACCTA 59.897 45.455 0.00 0.00 36.83 3.08
2438 2822 2.875933 CCGTGCTTCAACTTTGACCTAA 59.124 45.455 0.00 0.00 36.83 2.69
2439 2823 3.314080 CCGTGCTTCAACTTTGACCTAAA 59.686 43.478 0.00 0.00 36.83 1.85
2440 2824 4.023193 CCGTGCTTCAACTTTGACCTAAAT 60.023 41.667 0.00 0.00 36.83 1.40
2441 2825 5.507315 CCGTGCTTCAACTTTGACCTAAATT 60.507 40.000 0.00 0.00 36.83 1.82
2442 2826 5.977129 CGTGCTTCAACTTTGACCTAAATTT 59.023 36.000 0.00 0.00 36.83 1.82
2443 2827 7.136119 CGTGCTTCAACTTTGACCTAAATTTA 58.864 34.615 0.00 0.00 36.83 1.40
2444 2828 7.646130 CGTGCTTCAACTTTGACCTAAATTTAA 59.354 33.333 0.00 0.00 36.83 1.52
2445 2829 8.752254 GTGCTTCAACTTTGACCTAAATTTAAC 58.248 33.333 0.00 0.00 36.83 2.01
2446 2830 8.691797 TGCTTCAACTTTGACCTAAATTTAACT 58.308 29.630 0.00 0.00 36.83 2.24
2450 2834 9.629878 TCAACTTTGACCTAAATTTAACTACCA 57.370 29.630 0.00 0.00 31.01 3.25
2453 2837 9.856162 ACTTTGACCTAAATTTAACTACCAAGA 57.144 29.630 0.00 0.00 0.00 3.02
2455 2839 8.625786 TTGACCTAAATTTAACTACCAAGACC 57.374 34.615 0.00 0.00 0.00 3.85
2456 2840 6.875195 TGACCTAAATTTAACTACCAAGACCG 59.125 38.462 0.00 0.00 0.00 4.79
2457 2841 7.008021 ACCTAAATTTAACTACCAAGACCGA 57.992 36.000 0.00 0.00 0.00 4.69
2458 2842 7.627311 ACCTAAATTTAACTACCAAGACCGAT 58.373 34.615 0.00 0.00 0.00 4.18
2459 2843 8.105197 ACCTAAATTTAACTACCAAGACCGATT 58.895 33.333 0.00 0.00 0.00 3.34
2460 2844 8.395633 CCTAAATTTAACTACCAAGACCGATTG 58.604 37.037 0.00 0.00 0.00 2.67
2461 2845 5.813080 ATTTAACTACCAAGACCGATTGC 57.187 39.130 0.00 0.00 0.00 3.56
2462 2846 1.722011 AACTACCAAGACCGATTGCG 58.278 50.000 0.00 0.00 37.24 4.85
2472 2856 3.427425 CGATTGCGGCGGGAACAA 61.427 61.111 9.78 4.36 0.00 2.83
2473 2857 2.958576 GATTGCGGCGGGAACAAA 59.041 55.556 9.78 0.00 0.00 2.83
2474 2858 1.287503 GATTGCGGCGGGAACAAAA 59.712 52.632 9.78 0.00 0.00 2.44
2475 2859 0.732538 GATTGCGGCGGGAACAAAAG 60.733 55.000 9.78 0.00 0.00 2.27
2476 2860 1.460273 ATTGCGGCGGGAACAAAAGT 61.460 50.000 9.78 0.00 0.00 2.66
2477 2861 1.668101 TTGCGGCGGGAACAAAAGTT 61.668 50.000 9.78 0.00 0.00 2.66
2478 2862 0.818445 TGCGGCGGGAACAAAAGTTA 60.818 50.000 9.78 0.00 0.00 2.24
2479 2863 0.524414 GCGGCGGGAACAAAAGTTAT 59.476 50.000 9.78 0.00 0.00 1.89
2480 2864 1.738908 GCGGCGGGAACAAAAGTTATA 59.261 47.619 9.78 0.00 0.00 0.98
2481 2865 2.356695 GCGGCGGGAACAAAAGTTATAT 59.643 45.455 9.78 0.00 0.00 0.86
2482 2866 3.547413 GCGGCGGGAACAAAAGTTATATC 60.547 47.826 9.78 0.00 0.00 1.63
2483 2867 3.623960 CGGCGGGAACAAAAGTTATATCA 59.376 43.478 0.00 0.00 0.00 2.15
2484 2868 4.260620 CGGCGGGAACAAAAGTTATATCAG 60.261 45.833 0.00 0.00 0.00 2.90
2485 2869 4.638865 GGCGGGAACAAAAGTTATATCAGT 59.361 41.667 0.00 0.00 0.00 3.41
2486 2870 5.448632 GGCGGGAACAAAAGTTATATCAGTG 60.449 44.000 0.00 0.00 0.00 3.66
2487 2871 5.353123 GCGGGAACAAAAGTTATATCAGTGA 59.647 40.000 0.00 0.00 0.00 3.41
2488 2872 6.128117 GCGGGAACAAAAGTTATATCAGTGAA 60.128 38.462 0.00 0.00 0.00 3.18
2489 2873 7.415206 GCGGGAACAAAAGTTATATCAGTGAAT 60.415 37.037 0.00 0.00 0.00 2.57
2490 2874 8.458843 CGGGAACAAAAGTTATATCAGTGAATT 58.541 33.333 0.00 0.00 0.00 2.17
2491 2875 9.788960 GGGAACAAAAGTTATATCAGTGAATTC 57.211 33.333 0.00 0.00 0.00 2.17
2492 2876 9.490663 GGAACAAAAGTTATATCAGTGAATTCG 57.509 33.333 0.00 0.00 0.00 3.34
2498 2882 8.783999 AAGTTATATCAGTGAATTCGTACTCG 57.216 34.615 0.00 0.00 38.55 4.18
2499 2883 8.151141 AGTTATATCAGTGAATTCGTACTCGA 57.849 34.615 0.00 1.78 44.66 4.04
2533 2917 9.628746 TTTTAATTATGTAACTTTTTCTCCCGC 57.371 29.630 0.00 0.00 0.00 6.13
2534 2918 5.830000 ATTATGTAACTTTTTCTCCCGCC 57.170 39.130 0.00 0.00 0.00 6.13
2535 2919 1.515081 TGTAACTTTTTCTCCCGCCG 58.485 50.000 0.00 0.00 0.00 6.46
2536 2920 0.167470 GTAACTTTTTCTCCCGCCGC 59.833 55.000 0.00 0.00 0.00 6.53
2537 2921 0.250381 TAACTTTTTCTCCCGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
2538 2922 1.515521 AACTTTTTCTCCCGCCGCAG 61.516 55.000 0.00 0.00 0.00 5.18
2539 2923 1.966451 CTTTTTCTCCCGCCGCAGT 60.966 57.895 0.00 0.00 0.00 4.40
2540 2924 1.912371 CTTTTTCTCCCGCCGCAGTC 61.912 60.000 0.00 0.00 0.00 3.51
2541 2925 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
2551 2935 3.147294 CGCAGTCGGTCTCGTTTG 58.853 61.111 0.00 0.00 37.69 2.93
2552 2936 1.660575 CGCAGTCGGTCTCGTTTGT 60.661 57.895 0.00 0.00 37.69 2.83
2553 2937 1.213094 CGCAGTCGGTCTCGTTTGTT 61.213 55.000 0.00 0.00 37.69 2.83
2554 2938 1.774639 GCAGTCGGTCTCGTTTGTTA 58.225 50.000 0.00 0.00 37.69 2.41
2555 2939 2.129607 GCAGTCGGTCTCGTTTGTTAA 58.870 47.619 0.00 0.00 37.69 2.01
2556 2940 2.540931 GCAGTCGGTCTCGTTTGTTAAA 59.459 45.455 0.00 0.00 37.69 1.52
2557 2941 3.185797 GCAGTCGGTCTCGTTTGTTAAAT 59.814 43.478 0.00 0.00 37.69 1.40
2558 2942 4.319261 GCAGTCGGTCTCGTTTGTTAAATT 60.319 41.667 0.00 0.00 37.69 1.82
2559 2943 5.744490 CAGTCGGTCTCGTTTGTTAAATTT 58.256 37.500 0.00 0.00 37.69 1.82
2560 2944 6.564499 GCAGTCGGTCTCGTTTGTTAAATTTA 60.564 38.462 0.00 0.00 37.69 1.40
2561 2945 7.515643 CAGTCGGTCTCGTTTGTTAAATTTAT 58.484 34.615 0.00 0.00 37.69 1.40
2562 2946 7.477422 CAGTCGGTCTCGTTTGTTAAATTTATG 59.523 37.037 0.00 0.00 37.69 1.90
2563 2947 6.739550 GTCGGTCTCGTTTGTTAAATTTATGG 59.260 38.462 0.00 0.00 37.69 2.74
2564 2948 6.427547 TCGGTCTCGTTTGTTAAATTTATGGT 59.572 34.615 0.00 0.00 37.69 3.55
2565 2949 6.739550 CGGTCTCGTTTGTTAAATTTATGGTC 59.260 38.462 0.00 0.00 0.00 4.02
2566 2950 7.571613 CGGTCTCGTTTGTTAAATTTATGGTCA 60.572 37.037 0.00 0.00 0.00 4.02
2567 2951 8.077386 GGTCTCGTTTGTTAAATTTATGGTCAA 58.923 33.333 0.00 1.18 0.00 3.18
2568 2952 9.453325 GTCTCGTTTGTTAAATTTATGGTCAAA 57.547 29.630 0.00 6.53 0.00 2.69
2569 2953 9.672086 TCTCGTTTGTTAAATTTATGGTCAAAG 57.328 29.630 0.00 4.73 0.00 2.77
2570 2954 9.458374 CTCGTTTGTTAAATTTATGGTCAAAGT 57.542 29.630 0.00 0.00 0.00 2.66
2571 2955 9.804758 TCGTTTGTTAAATTTATGGTCAAAGTT 57.195 25.926 0.00 0.00 31.36 2.66
2575 2959 9.453325 TTGTTAAATTTATGGTCAAAGTTCGAC 57.547 29.630 0.00 0.00 29.44 4.20
2579 2963 3.961729 GGTCAAAGTTCGACCCCG 58.038 61.111 1.08 0.00 46.12 5.73
2580 2964 1.670083 GGTCAAAGTTCGACCCCGG 60.670 63.158 1.08 0.00 46.12 5.73
2581 2965 1.670083 GTCAAAGTTCGACCCCGGG 60.670 63.158 15.80 15.80 36.24 5.73
2582 2966 1.837947 TCAAAGTTCGACCCCGGGA 60.838 57.895 26.32 0.00 36.24 5.14
2583 2967 1.071814 CAAAGTTCGACCCCGGGAA 59.928 57.895 26.32 4.79 36.24 3.97
2584 2968 0.953960 CAAAGTTCGACCCCGGGAAG 60.954 60.000 26.32 13.12 36.24 3.46
2585 2969 2.743126 AAAGTTCGACCCCGGGAAGC 62.743 60.000 26.32 9.82 36.24 3.86
2602 2986 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
2603 2987 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
2604 2988 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
2605 2989 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
2606 2990 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
2607 2991 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
2608 2992 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
2609 2993 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
2610 2994 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
2611 2995 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
2612 2996 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
2613 2997 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
2614 2998 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
2615 2999 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
2616 3000 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
2617 3001 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
2618 3002 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
2630 3014 7.093421 GGAATGGAGGGAGTATATACAAGGTAC 60.093 44.444 15.18 2.36 0.00 3.34
2648 3032 6.903340 AGGTACTTTTATATCTTGTGGGGT 57.097 37.500 0.00 0.00 27.25 4.95
2649 3033 7.280044 AGGTACTTTTATATCTTGTGGGGTT 57.720 36.000 0.00 0.00 27.25 4.11
2650 3034 8.396619 AGGTACTTTTATATCTTGTGGGGTTA 57.603 34.615 0.00 0.00 27.25 2.85
2651 3035 8.491958 AGGTACTTTTATATCTTGTGGGGTTAG 58.508 37.037 0.00 0.00 27.25 2.34
2652 3036 8.270030 GGTACTTTTATATCTTGTGGGGTTAGT 58.730 37.037 0.00 0.00 0.00 2.24
2653 3037 9.322773 GTACTTTTATATCTTGTGGGGTTAGTC 57.677 37.037 0.00 0.00 0.00 2.59
2654 3038 8.159229 ACTTTTATATCTTGTGGGGTTAGTCT 57.841 34.615 0.00 0.00 0.00 3.24
2655 3039 9.275572 ACTTTTATATCTTGTGGGGTTAGTCTA 57.724 33.333 0.00 0.00 0.00 2.59
2659 3043 7.691993 ATATCTTGTGGGGTTAGTCTATTGT 57.308 36.000 0.00 0.00 0.00 2.71
2660 3044 5.160607 TCTTGTGGGGTTAGTCTATTGTG 57.839 43.478 0.00 0.00 0.00 3.33
2666 3050 4.105057 TGGGGTTAGTCTATTGTGTGGTTT 59.895 41.667 0.00 0.00 0.00 3.27
2775 3171 1.703411 CTGGTTTGGCAAAGGGAGAA 58.297 50.000 13.94 0.00 0.00 2.87
2780 3176 2.893489 GTTTGGCAAAGGGAGAAGATGT 59.107 45.455 13.94 0.00 0.00 3.06
2823 3219 1.166531 GCCAGGGAAGCGCGAAATAT 61.167 55.000 12.10 0.00 0.00 1.28
3013 3589 8.579850 TCTGCATGGTAATGAATCTTTAGTTT 57.420 30.769 0.00 0.00 35.67 2.66
3177 3754 5.587443 TGATCAATCAACTACCAATGCTCTG 59.413 40.000 0.00 0.00 33.08 3.35
3184 3761 2.038557 ACTACCAATGCTCTGAAACCGT 59.961 45.455 0.00 0.00 0.00 4.83
3194 3771 3.393800 CTCTGAAACCGTATATGGCTGG 58.606 50.000 11.13 0.00 0.00 4.85
3195 3772 1.873591 CTGAAACCGTATATGGCTGGC 59.126 52.381 11.13 0.00 0.00 4.85
3212 3792 6.220201 TGGCTGGCTTTTAAATTTGAAGTAC 58.780 36.000 0.00 4.16 0.00 2.73
3227 3808 4.416516 TGAAGTACAGTGAAGGAGGATGA 58.583 43.478 0.00 0.00 0.00 2.92
3244 3826 6.536941 GGAGGATGAACTGTTAGAGATGAAAC 59.463 42.308 0.00 0.00 0.00 2.78
3328 3911 5.106317 GGGAGACGATGCTCAATTTGTTTTA 60.106 40.000 0.00 0.00 36.62 1.52
3360 4029 8.804688 ATGCCAAATTGTCAAAAATGAAATTG 57.195 26.923 0.00 0.00 36.10 2.32
3373 4042 9.672086 CAAAAATGAAATTGCATTGATGAGTTT 57.328 25.926 12.58 5.56 38.42 2.66
3495 5292 8.659925 TTAATCTCATTGCATGTTTTTGTTGT 57.340 26.923 0.00 0.00 0.00 3.32
3502 5299 6.551385 TTGCATGTTTTTGTTGTTTTCTGT 57.449 29.167 0.00 0.00 0.00 3.41
3663 5462 3.477530 ACTTTGGACTTGGTTGTAGCTC 58.522 45.455 0.00 0.00 0.00 4.09
3700 5500 3.120095 GCTTTGGGTCCGTAATGTGTAAC 60.120 47.826 0.00 0.00 37.35 2.50
3733 5533 1.637553 AGTTCCATGGAAGGACTGCAT 59.362 47.619 27.73 3.80 37.42 3.96
3738 5538 2.449464 CATGGAAGGACTGCATTGGAA 58.551 47.619 0.00 0.00 32.99 3.53
3739 5539 2.905415 TGGAAGGACTGCATTGGAAT 57.095 45.000 0.00 0.00 0.00 3.01
3859 5671 6.825944 TTTCATCGACACATAATTTCCCAA 57.174 33.333 0.00 0.00 0.00 4.12
3860 5672 5.811399 TCATCGACACATAATTTCCCAAC 57.189 39.130 0.00 0.00 0.00 3.77
3861 5673 4.638421 TCATCGACACATAATTTCCCAACC 59.362 41.667 0.00 0.00 0.00 3.77
3862 5674 4.295141 TCGACACATAATTTCCCAACCT 57.705 40.909 0.00 0.00 0.00 3.50
3863 5675 5.423704 TCGACACATAATTTCCCAACCTA 57.576 39.130 0.00 0.00 0.00 3.08
3864 5676 5.424757 TCGACACATAATTTCCCAACCTAG 58.575 41.667 0.00 0.00 0.00 3.02
3865 5677 5.046159 TCGACACATAATTTCCCAACCTAGT 60.046 40.000 0.00 0.00 0.00 2.57
3866 5678 6.154877 TCGACACATAATTTCCCAACCTAGTA 59.845 38.462 0.00 0.00 0.00 1.82
3867 5679 6.257193 CGACACATAATTTCCCAACCTAGTAC 59.743 42.308 0.00 0.00 0.00 2.73
3868 5680 7.266905 ACACATAATTTCCCAACCTAGTACT 57.733 36.000 0.00 0.00 0.00 2.73
3869 5681 8.383374 ACACATAATTTCCCAACCTAGTACTA 57.617 34.615 1.89 1.89 0.00 1.82
3870 5682 8.262933 ACACATAATTTCCCAACCTAGTACTAC 58.737 37.037 0.00 0.00 0.00 2.73
3871 5683 7.713942 CACATAATTTCCCAACCTAGTACTACC 59.286 40.741 0.00 0.00 0.00 3.18
3872 5684 5.349061 AATTTCCCAACCTAGTACTACCG 57.651 43.478 0.00 0.00 0.00 4.02
3873 5685 2.442236 TCCCAACCTAGTACTACCGG 57.558 55.000 0.00 0.00 0.00 5.28
3874 5686 1.922447 TCCCAACCTAGTACTACCGGA 59.078 52.381 9.46 5.26 0.00 5.14
3875 5687 2.311542 TCCCAACCTAGTACTACCGGAA 59.688 50.000 9.46 0.00 0.00 4.30
3876 5688 3.052642 TCCCAACCTAGTACTACCGGAAT 60.053 47.826 9.46 0.00 0.00 3.01
3877 5689 4.167892 TCCCAACCTAGTACTACCGGAATA 59.832 45.833 9.46 0.00 0.00 1.75
3878 5690 4.895297 CCCAACCTAGTACTACCGGAATAA 59.105 45.833 9.46 0.00 0.00 1.40
3879 5691 5.221322 CCCAACCTAGTACTACCGGAATAAC 60.221 48.000 9.46 0.37 0.00 1.89
3880 5692 5.595952 CCAACCTAGTACTACCGGAATAACT 59.404 44.000 9.46 9.00 0.00 2.24
3881 5693 6.460676 CCAACCTAGTACTACCGGAATAACTG 60.461 46.154 9.46 0.00 0.00 3.16
3882 5694 5.760131 ACCTAGTACTACCGGAATAACTGT 58.240 41.667 9.46 0.00 0.00 3.55
3883 5695 5.825151 ACCTAGTACTACCGGAATAACTGTC 59.175 44.000 9.46 0.00 0.00 3.51
3884 5696 6.060788 CCTAGTACTACCGGAATAACTGTCT 58.939 44.000 9.46 0.00 0.00 3.41
3885 5697 7.147479 ACCTAGTACTACCGGAATAACTGTCTA 60.147 40.741 9.46 0.00 0.00 2.59
3886 5698 7.882271 CCTAGTACTACCGGAATAACTGTCTAT 59.118 40.741 9.46 0.00 0.00 1.98
3887 5699 7.507733 AGTACTACCGGAATAACTGTCTATG 57.492 40.000 9.46 0.00 0.00 2.23
3888 5700 5.197682 ACTACCGGAATAACTGTCTATGC 57.802 43.478 9.46 0.00 0.00 3.14
3889 5701 3.470645 ACCGGAATAACTGTCTATGCC 57.529 47.619 9.46 0.00 0.00 4.40
3890 5702 2.223971 ACCGGAATAACTGTCTATGCCG 60.224 50.000 9.46 16.22 46.35 5.69
3893 5705 3.050619 GGAATAACTGTCTATGCCGACG 58.949 50.000 0.00 0.00 36.71 5.12
3894 5706 2.795175 ATAACTGTCTATGCCGACGG 57.205 50.000 10.29 10.29 44.11 4.79
3915 5727 4.616181 GCATTTACTATGCCGACAACTT 57.384 40.909 0.00 0.00 39.01 2.66
3916 5728 4.981794 GCATTTACTATGCCGACAACTTT 58.018 39.130 0.00 0.00 39.01 2.66
3917 5729 5.399013 GCATTTACTATGCCGACAACTTTT 58.601 37.500 0.00 0.00 39.01 2.27
3918 5730 5.861787 GCATTTACTATGCCGACAACTTTTT 59.138 36.000 0.00 0.00 39.01 1.94
3919 5731 6.183359 GCATTTACTATGCCGACAACTTTTTG 60.183 38.462 0.00 0.00 39.01 2.44
3920 5732 8.468381 GCATTTACTATGCCGACAACTTTTTGT 61.468 37.037 0.00 0.00 42.58 2.83
3927 5739 2.120765 ACAACTTTTTGTCGGGGCC 58.879 52.632 0.00 0.00 42.67 5.80
3928 5740 1.007849 CAACTTTTTGTCGGGGCCG 60.008 57.895 0.00 0.00 41.35 6.13
3929 5741 1.454295 AACTTTTTGTCGGGGCCGT 60.454 52.632 0.00 0.00 40.74 5.68
3930 5742 1.449726 AACTTTTTGTCGGGGCCGTC 61.450 55.000 0.00 0.00 40.74 4.79
3931 5743 2.961669 CTTTTTGTCGGGGCCGTCG 61.962 63.158 10.39 10.39 40.74 5.12
3932 5744 4.992511 TTTTGTCGGGGCCGTCGG 62.993 66.667 6.99 6.99 40.74 4.79
3949 5761 3.071580 GGCATAGCCGGAGATATGC 57.928 57.895 26.33 26.33 45.62 3.14
3950 5762 3.071580 GCATAGCCGGAGATATGCC 57.928 57.895 24.98 13.72 42.82 4.40
3951 5763 0.539051 GCATAGCCGGAGATATGCCT 59.461 55.000 24.98 7.20 42.82 4.75
3952 5764 1.757118 GCATAGCCGGAGATATGCCTA 59.243 52.381 24.98 8.94 42.82 3.93
3953 5765 2.168521 GCATAGCCGGAGATATGCCTAA 59.831 50.000 24.98 0.00 42.82 2.69
3954 5766 3.739519 GCATAGCCGGAGATATGCCTAAG 60.740 52.174 24.98 7.21 42.82 2.18
3955 5767 1.270907 AGCCGGAGATATGCCTAAGG 58.729 55.000 5.05 0.00 0.00 2.69
3965 5777 2.045340 GCCTAAGGCCCGCAGAAA 60.045 61.111 0.00 0.00 44.06 2.52
3966 5778 2.115291 GCCTAAGGCCCGCAGAAAG 61.115 63.158 0.00 0.00 44.06 2.62
3967 5779 2.115291 CCTAAGGCCCGCAGAAAGC 61.115 63.158 0.00 0.00 40.87 3.51
3973 5785 3.121030 CCCGCAGAAAGCCGTCAG 61.121 66.667 0.00 0.00 41.38 3.51
3974 5786 3.793144 CCGCAGAAAGCCGTCAGC 61.793 66.667 0.00 0.00 41.38 4.26
3984 5796 3.905900 GCCGTCAGCATAGAAAAGC 57.094 52.632 0.00 0.00 42.97 3.51
3985 5797 0.378610 GCCGTCAGCATAGAAAAGCC 59.621 55.000 0.00 0.00 42.97 4.35
3986 5798 0.652592 CCGTCAGCATAGAAAAGCCG 59.347 55.000 0.00 0.00 0.00 5.52
3987 5799 1.359848 CGTCAGCATAGAAAAGCCGT 58.640 50.000 0.00 0.00 0.00 5.68
3988 5800 1.732259 CGTCAGCATAGAAAAGCCGTT 59.268 47.619 0.00 0.00 0.00 4.44
3989 5801 2.474526 CGTCAGCATAGAAAAGCCGTTG 60.475 50.000 0.00 0.00 0.00 4.10
3990 5802 2.083774 TCAGCATAGAAAAGCCGTTGG 58.916 47.619 0.00 0.00 0.00 3.77
4001 5813 4.131376 CCGTTGGCATAGCTGGAG 57.869 61.111 0.00 0.00 0.00 3.86
4002 5814 1.522092 CCGTTGGCATAGCTGGAGA 59.478 57.895 0.00 0.00 0.00 3.71
4003 5815 0.107456 CCGTTGGCATAGCTGGAGAT 59.893 55.000 0.00 0.00 0.00 2.75
4004 5816 1.344438 CCGTTGGCATAGCTGGAGATA 59.656 52.381 0.00 0.00 0.00 1.98
4005 5817 2.027745 CCGTTGGCATAGCTGGAGATAT 60.028 50.000 0.00 0.00 0.00 1.63
4006 5818 2.998670 CGTTGGCATAGCTGGAGATATG 59.001 50.000 7.43 7.43 44.65 1.78
4012 5824 4.039151 CATAGCTGGAGATATGCCTACG 57.961 50.000 0.00 0.00 37.55 3.51
4013 5825 1.261480 AGCTGGAGATATGCCTACGG 58.739 55.000 0.00 0.00 0.00 4.02
4041 5853 0.378610 GGCATAGAAAAGCCGTCAGC 59.621 55.000 0.00 0.00 41.70 4.26
4051 5863 3.923354 GCCGTCAGCATATCTCCAT 57.077 52.632 0.00 0.00 42.97 3.41
4053 5865 3.533606 GCCGTCAGCATATCTCCATAT 57.466 47.619 0.00 0.00 42.97 1.78
4054 5866 4.655762 GCCGTCAGCATATCTCCATATA 57.344 45.455 0.00 0.00 42.97 0.86
4055 5867 5.207110 GCCGTCAGCATATCTCCATATAT 57.793 43.478 0.00 0.00 42.97 0.86
4056 5868 4.987285 GCCGTCAGCATATCTCCATATATG 59.013 45.833 5.68 5.68 42.97 1.78
4063 5875 4.550422 CATATCTCCATATATGCCGACGG 58.450 47.826 10.29 10.29 34.10 4.79
4100 5912 2.548178 GGCCATCCGCATAGACATG 58.452 57.895 0.00 0.00 40.31 3.21
4101 5913 0.957395 GGCCATCCGCATAGACATGG 60.957 60.000 0.00 0.00 40.31 3.66
4102 5914 2.548178 CCATCCGCATAGACATGGC 58.452 57.895 0.00 0.00 32.36 4.40
4103 5915 0.957395 CCATCCGCATAGACATGGCC 60.957 60.000 0.00 0.00 32.36 5.36
4104 5916 1.004560 ATCCGCATAGACATGGCCG 60.005 57.895 0.00 0.00 32.36 6.13
4105 5917 1.758440 ATCCGCATAGACATGGCCGT 61.758 55.000 0.00 0.00 32.36 5.68
4106 5918 2.246739 CCGCATAGACATGGCCGTG 61.247 63.158 23.83 23.83 32.36 4.94
4107 5919 2.246739 CGCATAGACATGGCCGTGG 61.247 63.158 28.37 11.56 32.36 4.94
4108 5920 2.546494 GCATAGACATGGCCGTGGC 61.546 63.158 28.37 26.57 41.06 5.01
4109 5921 2.108976 ATAGACATGGCCGTGGCG 59.891 61.111 28.37 4.44 43.06 5.69
4110 5922 2.431454 ATAGACATGGCCGTGGCGA 61.431 57.895 28.37 22.94 43.06 5.54
4111 5923 2.644555 ATAGACATGGCCGTGGCGAC 62.645 60.000 28.37 15.85 43.06 5.19
4128 5940 4.483243 CCCCGGGGTTGACGATGG 62.483 72.222 33.25 0.60 0.00 3.51
4129 5941 4.483243 CCCGGGGTTGACGATGGG 62.483 72.222 14.71 0.00 0.00 4.00
4131 5943 4.096003 CGGGGTTGACGATGGGCT 62.096 66.667 0.00 0.00 0.00 5.19
4132 5944 2.438434 GGGGTTGACGATGGGCTG 60.438 66.667 0.00 0.00 0.00 4.85
4133 5945 2.668632 GGGTTGACGATGGGCTGA 59.331 61.111 0.00 0.00 0.00 4.26
4134 5946 1.745489 GGGTTGACGATGGGCTGAC 60.745 63.158 0.00 0.00 0.00 3.51
4135 5947 2.100631 GGTTGACGATGGGCTGACG 61.101 63.158 0.00 0.00 0.00 4.35
4136 5948 2.434185 TTGACGATGGGCTGACGC 60.434 61.111 0.00 0.00 0.00 5.19
4146 5958 3.044305 GCTGACGCCGTCAAAGCT 61.044 61.111 21.56 0.00 42.26 3.74
4147 5959 1.736645 GCTGACGCCGTCAAAGCTA 60.737 57.895 21.56 0.00 42.26 3.32
4148 5960 1.084370 GCTGACGCCGTCAAAGCTAT 61.084 55.000 21.56 0.00 42.26 2.97
4149 5961 0.647410 CTGACGCCGTCAAAGCTATG 59.353 55.000 21.56 3.65 42.26 2.23
4150 5962 1.348594 GACGCCGTCAAAGCTATGC 59.651 57.895 13.23 0.00 32.09 3.14
4151 5963 1.358725 GACGCCGTCAAAGCTATGCA 61.359 55.000 13.23 0.00 32.09 3.96
4152 5964 1.349627 CGCCGTCAAAGCTATGCAG 59.650 57.895 0.00 0.00 0.00 4.41
4153 5965 1.083806 CGCCGTCAAAGCTATGCAGA 61.084 55.000 0.00 0.00 0.00 4.26
4154 5966 0.375106 GCCGTCAAAGCTATGCAGAC 59.625 55.000 0.00 0.00 0.00 3.51
4155 5967 0.647410 CCGTCAAAGCTATGCAGACG 59.353 55.000 13.60 13.60 43.95 4.18
4156 5968 0.647410 CGTCAAAGCTATGCAGACGG 59.353 55.000 12.93 0.00 42.25 4.79
4157 5969 0.375106 GTCAAAGCTATGCAGACGGC 59.625 55.000 0.00 0.00 45.13 5.68
4158 5970 0.744414 TCAAAGCTATGCAGACGGCC 60.744 55.000 0.00 0.00 43.89 6.13
4159 5971 1.452108 AAAGCTATGCAGACGGCCC 60.452 57.895 0.00 0.00 43.89 5.80
4160 5972 1.915078 AAAGCTATGCAGACGGCCCT 61.915 55.000 0.00 0.00 43.89 5.19
4161 5973 2.590007 GCTATGCAGACGGCCCTG 60.590 66.667 0.00 0.00 43.89 4.45
4162 5974 3.094062 GCTATGCAGACGGCCCTGA 62.094 63.158 12.73 0.00 43.89 3.86
4163 5975 1.227380 CTATGCAGACGGCCCTGAC 60.227 63.158 12.73 5.16 43.89 3.51
4164 5976 1.960040 CTATGCAGACGGCCCTGACA 61.960 60.000 12.73 10.00 43.89 3.58
4165 5977 1.960040 TATGCAGACGGCCCTGACAG 61.960 60.000 12.73 0.00 43.89 3.51
4297 6109 8.907222 ATATTGATTTTGTTGGAAATATGCCC 57.093 30.769 0.00 0.00 29.75 5.36
4298 6110 6.371595 TTGATTTTGTTGGAAATATGCCCT 57.628 33.333 0.00 0.00 29.75 5.19
4299 6111 7.487822 TTGATTTTGTTGGAAATATGCCCTA 57.512 32.000 0.00 0.00 29.75 3.53
4300 6112 7.111247 TGATTTTGTTGGAAATATGCCCTAG 57.889 36.000 0.00 0.00 29.75 3.02
4301 6113 6.894654 TGATTTTGTTGGAAATATGCCCTAGA 59.105 34.615 0.00 0.00 29.75 2.43
4302 6114 6.773976 TTTTGTTGGAAATATGCCCTAGAG 57.226 37.500 0.00 0.00 0.00 2.43
4303 6115 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
4372 6184 8.902540 TCGTTTATTATCCATGCTAGAATTGT 57.097 30.769 0.00 0.00 0.00 2.71
4373 6185 9.990360 TCGTTTATTATCCATGCTAGAATTGTA 57.010 29.630 0.00 0.00 0.00 2.41
4382 6194 8.206126 TCCATGCTAGAATTGTATTGATAGGA 57.794 34.615 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.715249 TCAGTAAAGAATTAGTATGGATGGCAC 59.285 37.037 0.00 0.00 0.00 5.01
21 22 7.801104 TCAGTAAAGAATTAGTATGGATGGCA 58.199 34.615 0.00 0.00 0.00 4.92
22 23 8.677148 TTCAGTAAAGAATTAGTATGGATGGC 57.323 34.615 0.00 0.00 0.00 4.40
484 485 7.559897 CCCTCCATGCCTTTAGACTTAAATTTA 59.440 37.037 0.00 0.00 0.00 1.40
495 496 4.587056 GGCCCTCCATGCCTTTAG 57.413 61.111 0.00 0.00 45.70 1.85
517 518 5.238868 TCTTCAGTGCCTATCTATACACGAC 59.761 44.000 0.00 0.00 38.08 4.34
532 533 9.521503 AAAGAAGAGTTAATTTTTCTTCAGTGC 57.478 29.630 14.33 0.00 45.79 4.40
547 548 7.928706 CACTGAGAGAAAGGAAAAGAAGAGTTA 59.071 37.037 0.00 0.00 0.00 2.24
560 561 8.394121 GCATAAAATAGAACACTGAGAGAAAGG 58.606 37.037 0.00 0.00 0.00 3.11
618 642 0.949105 AATTGGACGACACGCTGGAC 60.949 55.000 0.00 0.00 0.00 4.02
626 650 3.653344 CTCAAGTCTGAATTGGACGACA 58.347 45.455 16.68 0.00 38.58 4.35
627 651 2.413453 GCTCAAGTCTGAATTGGACGAC 59.587 50.000 16.68 0.64 38.58 4.34
628 652 2.037121 TGCTCAAGTCTGAATTGGACGA 59.963 45.455 16.68 0.00 38.58 4.20
635 659 2.005451 GTCGCATGCTCAAGTCTGAAT 58.995 47.619 17.13 0.00 0.00 2.57
751 799 2.092429 AGGAAGTGCTGGTGTTCTTTGA 60.092 45.455 0.00 0.00 0.00 2.69
784 832 1.103803 CGAGTTAGCACCTCTGGCTA 58.896 55.000 0.00 0.00 42.62 3.93
876 924 7.443575 CCCTCGACATCTATTCTGATGAAAAAT 59.556 37.037 10.89 0.00 44.71 1.82
1060 1112 7.340122 TCAGGTCAGAGTATTCTATCTGTTG 57.660 40.000 2.45 1.53 42.86 3.33
1065 1117 8.106247 CCTAGTTCAGGTCAGAGTATTCTATC 57.894 42.308 0.00 0.00 39.91 2.08
1243 1295 4.601857 AGAGAGTAAACCCCCAAAAGATGA 59.398 41.667 0.00 0.00 0.00 2.92
1292 1344 4.067944 AGACAATCCTGGTAAGAGGACT 57.932 45.455 0.00 0.00 45.20 3.85
1349 1401 3.102204 CCTGAAAAGGAGGCATGGATTT 58.898 45.455 0.00 0.00 0.00 2.17
1425 1477 8.861086 TGATATGATAGAACCTAGTCACTTTCC 58.139 37.037 0.00 0.00 0.00 3.13
1713 2056 0.255890 ATGGCTGGGCGTGAACTATT 59.744 50.000 0.00 0.00 0.00 1.73
1722 2065 1.134521 TCACTACTTTATGGCTGGGCG 60.135 52.381 0.00 0.00 0.00 6.13
1735 2078 8.474710 TTTGTAGGAACTAGAAAGTCACTACT 57.525 34.615 0.00 0.00 46.86 2.57
1759 2102 8.907222 ATCAAGCAGGAAAAATAACAAACATT 57.093 26.923 0.00 0.00 0.00 2.71
1809 2152 9.016438 GTTATCTAAGGTGGAACAAAAACCATA 57.984 33.333 0.00 0.00 44.16 2.74
1926 2277 3.371166 GGTTGCCCACCTAGCTTATGTAA 60.371 47.826 0.00 0.00 43.29 2.41
1929 2280 1.680338 GGTTGCCCACCTAGCTTATG 58.320 55.000 0.00 0.00 43.29 1.90
1939 2295 3.118408 TCTCAGTACATATGGTTGCCCAC 60.118 47.826 7.80 0.00 45.65 4.61
2278 2656 9.256477 GATAATATCACACCGTAGATCAAAACA 57.744 33.333 0.00 0.00 0.00 2.83
2337 2721 1.733402 CTGCCAGCCTAGTCTCCTCG 61.733 65.000 0.00 0.00 0.00 4.63
2344 2728 1.382420 CCTCCTCTGCCAGCCTAGT 60.382 63.158 0.00 0.00 0.00 2.57
2381 2765 0.324943 ACATTGTGGAACGGAGGGAG 59.675 55.000 0.00 0.00 42.39 4.30
2382 2766 1.553248 CTACATTGTGGAACGGAGGGA 59.447 52.381 0.00 0.00 42.39 4.20
2383 2767 1.278127 ACTACATTGTGGAACGGAGGG 59.722 52.381 7.20 0.00 42.39 4.30
2384 2768 2.346803 CACTACATTGTGGAACGGAGG 58.653 52.381 7.20 0.00 42.39 4.30
2385 2769 1.732259 GCACTACATTGTGGAACGGAG 59.268 52.381 7.20 0.00 42.39 4.63
2386 2770 1.346395 AGCACTACATTGTGGAACGGA 59.654 47.619 7.20 0.00 42.39 4.69
2387 2771 1.808411 AGCACTACATTGTGGAACGG 58.192 50.000 7.20 0.00 42.39 4.44
2388 2772 2.159627 GGAAGCACTACATTGTGGAACG 59.840 50.000 7.20 0.00 42.39 3.95
2389 2773 3.412386 AGGAAGCACTACATTGTGGAAC 58.588 45.455 7.20 0.00 38.31 3.62
2390 2774 3.327757 AGAGGAAGCACTACATTGTGGAA 59.672 43.478 7.20 0.00 38.31 3.53
2391 2775 2.906389 AGAGGAAGCACTACATTGTGGA 59.094 45.455 7.20 0.00 38.31 4.02
2392 2776 3.340814 AGAGGAAGCACTACATTGTGG 57.659 47.619 0.00 0.00 38.31 4.17
2393 2777 5.911752 AGATAGAGGAAGCACTACATTGTG 58.088 41.667 0.00 0.00 40.62 3.33
2394 2778 5.069781 GGAGATAGAGGAAGCACTACATTGT 59.930 44.000 0.00 0.00 0.00 2.71
2395 2779 5.537188 GGAGATAGAGGAAGCACTACATTG 58.463 45.833 0.00 0.00 0.00 2.82
2396 2780 4.279671 CGGAGATAGAGGAAGCACTACATT 59.720 45.833 0.00 0.00 0.00 2.71
2397 2781 3.823873 CGGAGATAGAGGAAGCACTACAT 59.176 47.826 0.00 0.00 0.00 2.29
2398 2782 3.215151 CGGAGATAGAGGAAGCACTACA 58.785 50.000 0.00 0.00 0.00 2.74
2399 2783 3.003897 CACGGAGATAGAGGAAGCACTAC 59.996 52.174 0.00 0.00 0.00 2.73
2400 2784 3.215151 CACGGAGATAGAGGAAGCACTA 58.785 50.000 0.00 0.00 0.00 2.74
2401 2785 2.028130 CACGGAGATAGAGGAAGCACT 58.972 52.381 0.00 0.00 0.00 4.40
2402 2786 1.537135 GCACGGAGATAGAGGAAGCAC 60.537 57.143 0.00 0.00 0.00 4.40
2403 2787 0.747255 GCACGGAGATAGAGGAAGCA 59.253 55.000 0.00 0.00 0.00 3.91
2404 2788 1.036707 AGCACGGAGATAGAGGAAGC 58.963 55.000 0.00 0.00 0.00 3.86
2405 2789 2.690497 TGAAGCACGGAGATAGAGGAAG 59.310 50.000 0.00 0.00 0.00 3.46
2406 2790 2.735151 TGAAGCACGGAGATAGAGGAA 58.265 47.619 0.00 0.00 0.00 3.36
2407 2791 2.427453 GTTGAAGCACGGAGATAGAGGA 59.573 50.000 0.00 0.00 0.00 3.71
2408 2792 2.428890 AGTTGAAGCACGGAGATAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
2409 2793 3.791973 AGTTGAAGCACGGAGATAGAG 57.208 47.619 0.00 0.00 0.00 2.43
2410 2794 4.021456 TCAAAGTTGAAGCACGGAGATAGA 60.021 41.667 0.00 0.00 33.55 1.98
2411 2795 4.092091 GTCAAAGTTGAAGCACGGAGATAG 59.908 45.833 0.00 0.00 39.21 2.08
2412 2796 3.994392 GTCAAAGTTGAAGCACGGAGATA 59.006 43.478 0.00 0.00 39.21 1.98
2413 2797 2.808543 GTCAAAGTTGAAGCACGGAGAT 59.191 45.455 0.00 0.00 39.21 2.75
2414 2798 2.210116 GTCAAAGTTGAAGCACGGAGA 58.790 47.619 0.00 0.00 39.21 3.71
2415 2799 1.264288 GGTCAAAGTTGAAGCACGGAG 59.736 52.381 0.00 0.00 39.21 4.63
2416 2800 1.134220 AGGTCAAAGTTGAAGCACGGA 60.134 47.619 0.00 0.00 39.21 4.69
2417 2801 1.308998 AGGTCAAAGTTGAAGCACGG 58.691 50.000 0.00 0.00 39.21 4.94
2418 2802 4.545823 TTTAGGTCAAAGTTGAAGCACG 57.454 40.909 0.00 0.00 39.21 5.34
2419 2803 8.752254 GTTAAATTTAGGTCAAAGTTGAAGCAC 58.248 33.333 0.00 0.00 39.21 4.40
2420 2804 8.691797 AGTTAAATTTAGGTCAAAGTTGAAGCA 58.308 29.630 0.00 0.00 39.21 3.91
2424 2808 9.629878 TGGTAGTTAAATTTAGGTCAAAGTTGA 57.370 29.630 0.00 0.00 35.35 3.18
2427 2811 9.856162 TCTTGGTAGTTAAATTTAGGTCAAAGT 57.144 29.630 0.00 0.00 0.00 2.66
2429 2813 9.070179 GGTCTTGGTAGTTAAATTTAGGTCAAA 57.930 33.333 0.00 0.00 0.00 2.69
2430 2814 7.388500 CGGTCTTGGTAGTTAAATTTAGGTCAA 59.612 37.037 0.00 1.16 0.00 3.18
2431 2815 6.875195 CGGTCTTGGTAGTTAAATTTAGGTCA 59.125 38.462 0.00 0.00 0.00 4.02
2432 2816 7.099120 TCGGTCTTGGTAGTTAAATTTAGGTC 58.901 38.462 0.00 0.00 0.00 3.85
2433 2817 7.008021 TCGGTCTTGGTAGTTAAATTTAGGT 57.992 36.000 0.00 0.00 0.00 3.08
2434 2818 8.395633 CAATCGGTCTTGGTAGTTAAATTTAGG 58.604 37.037 0.00 0.00 0.00 2.69
2435 2819 7.908601 GCAATCGGTCTTGGTAGTTAAATTTAG 59.091 37.037 0.00 0.00 0.00 1.85
2436 2820 7.413219 CGCAATCGGTCTTGGTAGTTAAATTTA 60.413 37.037 0.00 0.00 0.00 1.40
2437 2821 6.617879 GCAATCGGTCTTGGTAGTTAAATTT 58.382 36.000 0.00 0.00 0.00 1.82
2438 2822 5.163794 CGCAATCGGTCTTGGTAGTTAAATT 60.164 40.000 0.00 0.00 0.00 1.82
2439 2823 4.331717 CGCAATCGGTCTTGGTAGTTAAAT 59.668 41.667 0.00 0.00 0.00 1.40
2440 2824 3.680937 CGCAATCGGTCTTGGTAGTTAAA 59.319 43.478 0.00 0.00 0.00 1.52
2441 2825 3.255725 CGCAATCGGTCTTGGTAGTTAA 58.744 45.455 0.00 0.00 0.00 2.01
2442 2826 2.883574 CGCAATCGGTCTTGGTAGTTA 58.116 47.619 0.00 0.00 0.00 2.24
2443 2827 1.722011 CGCAATCGGTCTTGGTAGTT 58.278 50.000 0.00 0.00 0.00 2.24
2444 2828 3.436001 CGCAATCGGTCTTGGTAGT 57.564 52.632 0.00 0.00 0.00 2.73
2455 2839 2.465097 TTTTGTTCCCGCCGCAATCG 62.465 55.000 0.00 0.00 0.00 3.34
2456 2840 0.732538 CTTTTGTTCCCGCCGCAATC 60.733 55.000 0.00 0.00 0.00 2.67
2457 2841 1.288752 CTTTTGTTCCCGCCGCAAT 59.711 52.632 0.00 0.00 0.00 3.56
2458 2842 1.668101 AACTTTTGTTCCCGCCGCAA 61.668 50.000 0.00 0.00 38.45 4.85
2459 2843 0.818445 TAACTTTTGTTCCCGCCGCA 60.818 50.000 0.00 0.00 42.45 5.69
2460 2844 0.524414 ATAACTTTTGTTCCCGCCGC 59.476 50.000 0.00 0.00 42.45 6.53
2461 2845 3.623960 TGATATAACTTTTGTTCCCGCCG 59.376 43.478 0.00 0.00 42.45 6.46
2462 2846 4.638865 ACTGATATAACTTTTGTTCCCGCC 59.361 41.667 0.00 0.00 42.45 6.13
2463 2847 5.353123 TCACTGATATAACTTTTGTTCCCGC 59.647 40.000 0.00 0.00 42.45 6.13
2464 2848 6.978343 TCACTGATATAACTTTTGTTCCCG 57.022 37.500 0.00 0.00 42.45 5.14
2465 2849 9.788960 GAATTCACTGATATAACTTTTGTTCCC 57.211 33.333 0.00 0.00 42.45 3.97
2466 2850 9.490663 CGAATTCACTGATATAACTTTTGTTCC 57.509 33.333 6.22 0.00 42.45 3.62
2472 2856 9.234384 CGAGTACGAATTCACTGATATAACTTT 57.766 33.333 6.22 0.00 42.66 2.66
2473 2857 8.618677 TCGAGTACGAATTCACTGATATAACTT 58.381 33.333 6.22 0.00 45.74 2.66
2474 2858 8.151141 TCGAGTACGAATTCACTGATATAACT 57.849 34.615 6.22 0.00 45.74 2.24
2507 2891 9.628746 GCGGGAGAAAAAGTTACATAATTAAAA 57.371 29.630 0.00 0.00 0.00 1.52
2508 2892 8.245491 GGCGGGAGAAAAAGTTACATAATTAAA 58.755 33.333 0.00 0.00 0.00 1.52
2509 2893 7.414319 CGGCGGGAGAAAAAGTTACATAATTAA 60.414 37.037 0.00 0.00 0.00 1.40
2510 2894 6.037391 CGGCGGGAGAAAAAGTTACATAATTA 59.963 38.462 0.00 0.00 0.00 1.40
2511 2895 5.163693 CGGCGGGAGAAAAAGTTACATAATT 60.164 40.000 0.00 0.00 0.00 1.40
2512 2896 4.334481 CGGCGGGAGAAAAAGTTACATAAT 59.666 41.667 0.00 0.00 0.00 1.28
2513 2897 3.685756 CGGCGGGAGAAAAAGTTACATAA 59.314 43.478 0.00 0.00 0.00 1.90
2514 2898 3.264104 CGGCGGGAGAAAAAGTTACATA 58.736 45.455 0.00 0.00 0.00 2.29
2515 2899 2.081462 CGGCGGGAGAAAAAGTTACAT 58.919 47.619 0.00 0.00 0.00 2.29
2516 2900 1.515081 CGGCGGGAGAAAAAGTTACA 58.485 50.000 0.00 0.00 0.00 2.41
2517 2901 0.167470 GCGGCGGGAGAAAAAGTTAC 59.833 55.000 9.78 0.00 0.00 2.50
2518 2902 0.250381 TGCGGCGGGAGAAAAAGTTA 60.250 50.000 9.78 0.00 0.00 2.24
2519 2903 1.515521 CTGCGGCGGGAGAAAAAGTT 61.516 55.000 9.78 0.00 32.53 2.66
2520 2904 1.966451 CTGCGGCGGGAGAAAAAGT 60.966 57.895 9.78 0.00 32.53 2.66
2521 2905 1.912371 GACTGCGGCGGGAGAAAAAG 61.912 60.000 19.55 0.00 35.29 2.27
2522 2906 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
2523 2907 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
2524 2908 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
2534 2918 1.213094 AACAAACGAGACCGACTGCG 61.213 55.000 0.00 0.00 39.50 5.18
2535 2919 1.774639 TAACAAACGAGACCGACTGC 58.225 50.000 0.00 0.00 39.50 4.40
2536 2920 4.985044 ATTTAACAAACGAGACCGACTG 57.015 40.909 0.00 0.00 39.50 3.51
2537 2921 5.996669 AAATTTAACAAACGAGACCGACT 57.003 34.783 0.00 0.00 39.50 4.18
2538 2922 6.739550 CCATAAATTTAACAAACGAGACCGAC 59.260 38.462 1.21 0.00 39.50 4.79
2539 2923 6.427547 ACCATAAATTTAACAAACGAGACCGA 59.572 34.615 1.21 0.00 39.50 4.69
2540 2924 6.604930 ACCATAAATTTAACAAACGAGACCG 58.395 36.000 1.21 0.00 42.50 4.79
2541 2925 7.586747 TGACCATAAATTTAACAAACGAGACC 58.413 34.615 1.21 0.00 0.00 3.85
2542 2926 9.453325 TTTGACCATAAATTTAACAAACGAGAC 57.547 29.630 1.21 0.00 0.00 3.36
2543 2927 9.672086 CTTTGACCATAAATTTAACAAACGAGA 57.328 29.630 1.21 0.00 0.00 4.04
2544 2928 9.458374 ACTTTGACCATAAATTTAACAAACGAG 57.542 29.630 1.21 4.89 0.00 4.18
2545 2929 9.804758 AACTTTGACCATAAATTTAACAAACGA 57.195 25.926 1.21 0.00 0.00 3.85
2549 2933 9.453325 GTCGAACTTTGACCATAAATTTAACAA 57.547 29.630 1.21 4.62 0.00 2.83
2563 2947 1.670083 CCCGGGGTCGAACTTTGAC 60.670 63.158 14.71 0.86 39.00 3.18
2564 2948 1.409251 TTCCCGGGGTCGAACTTTGA 61.409 55.000 23.50 0.00 39.00 2.69
2565 2949 0.953960 CTTCCCGGGGTCGAACTTTG 60.954 60.000 23.50 0.00 39.00 2.77
2566 2950 1.373812 CTTCCCGGGGTCGAACTTT 59.626 57.895 23.50 0.00 39.00 2.66
2567 2951 3.066198 CTTCCCGGGGTCGAACTT 58.934 61.111 23.50 0.00 39.00 2.66
2568 2952 3.703127 GCTTCCCGGGGTCGAACT 61.703 66.667 23.50 0.00 39.00 3.01
2585 2969 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
2586 2970 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
2587 2971 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
2588 2972 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
2589 2973 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
2590 2974 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
2591 2975 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
2592 2976 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
2593 2977 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
2594 2978 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
2598 2982 9.400208 TGTATATACTCCCTCCATTCCAAAATA 57.600 33.333 13.89 0.00 0.00 1.40
2599 2983 8.287904 TGTATATACTCCCTCCATTCCAAAAT 57.712 34.615 13.89 0.00 0.00 1.82
2600 2984 7.699709 TGTATATACTCCCTCCATTCCAAAA 57.300 36.000 13.89 0.00 0.00 2.44
2601 2985 7.202186 CCTTGTATATACTCCCTCCATTCCAAA 60.202 40.741 13.89 0.00 0.00 3.28
2602 2986 6.272324 CCTTGTATATACTCCCTCCATTCCAA 59.728 42.308 13.89 0.00 0.00 3.53
2603 2987 5.785423 CCTTGTATATACTCCCTCCATTCCA 59.215 44.000 13.89 0.00 0.00 3.53
2604 2988 5.785940 ACCTTGTATATACTCCCTCCATTCC 59.214 44.000 13.89 0.00 0.00 3.01
2605 2989 6.936968 ACCTTGTATATACTCCCTCCATTC 57.063 41.667 13.89 0.00 0.00 2.67
2606 2990 7.545546 AGTACCTTGTATATACTCCCTCCATT 58.454 38.462 13.89 0.00 0.00 3.16
2607 2991 7.117331 AGTACCTTGTATATACTCCCTCCAT 57.883 40.000 13.89 0.00 0.00 3.41
2608 2992 6.541264 AGTACCTTGTATATACTCCCTCCA 57.459 41.667 13.89 0.00 0.00 3.86
2609 2993 7.852550 AAAGTACCTTGTATATACTCCCTCC 57.147 40.000 13.89 0.00 0.00 4.30
2645 3029 5.067954 ACAAACCACACAATAGACTAACCC 58.932 41.667 0.00 0.00 0.00 4.11
2646 3030 7.916914 ATACAAACCACACAATAGACTAACC 57.083 36.000 0.00 0.00 0.00 2.85
2649 3033 9.344772 ACAAAATACAAACCACACAATAGACTA 57.655 29.630 0.00 0.00 0.00 2.59
2650 3034 8.134895 CACAAAATACAAACCACACAATAGACT 58.865 33.333 0.00 0.00 0.00 3.24
2651 3035 7.918562 ACACAAAATACAAACCACACAATAGAC 59.081 33.333 0.00 0.00 0.00 2.59
2652 3036 7.918033 CACACAAAATACAAACCACACAATAGA 59.082 33.333 0.00 0.00 0.00 1.98
2653 3037 7.168972 CCACACAAAATACAAACCACACAATAG 59.831 37.037 0.00 0.00 0.00 1.73
2654 3038 6.980978 CCACACAAAATACAAACCACACAATA 59.019 34.615 0.00 0.00 0.00 1.90
2655 3039 5.814705 CCACACAAAATACAAACCACACAAT 59.185 36.000 0.00 0.00 0.00 2.71
2656 3040 5.171476 CCACACAAAATACAAACCACACAA 58.829 37.500 0.00 0.00 0.00 3.33
2657 3041 4.220821 ACCACACAAAATACAAACCACACA 59.779 37.500 0.00 0.00 0.00 3.72
2658 3042 4.749976 ACCACACAAAATACAAACCACAC 58.250 39.130 0.00 0.00 0.00 3.82
2659 3043 5.171476 CAACCACACAAAATACAAACCACA 58.829 37.500 0.00 0.00 0.00 4.17
2660 3044 4.568760 CCAACCACACAAAATACAAACCAC 59.431 41.667 0.00 0.00 0.00 4.16
2666 3050 7.492669 CACAAAATACCAACCACACAAAATACA 59.507 33.333 0.00 0.00 0.00 2.29
2729 3125 5.389859 CACTCTTGCACCATCCAATTTTA 57.610 39.130 0.00 0.00 0.00 1.52
2823 3219 1.335810 CGACGCCTAGCAGGTACAATA 59.664 52.381 0.00 0.00 37.80 1.90
2854 3250 2.105766 ACGTACTTGATGGGGTACTCC 58.894 52.381 4.21 4.21 36.94 3.85
3013 3589 9.163894 AGATTTGGATCCAGATTCTAGTTGATA 57.836 33.333 18.31 0.00 32.44 2.15
3070 3647 9.877137 TTGATAATATGTCAATACGATGCAAAC 57.123 29.630 0.00 0.00 31.07 2.93
3177 3754 2.256117 AGCCAGCCATATACGGTTTC 57.744 50.000 0.00 0.00 0.00 2.78
3184 3761 8.757877 ACTTCAAATTTAAAAGCCAGCCATATA 58.242 29.630 10.79 0.00 0.00 0.86
3194 3771 8.968242 CCTTCACTGTACTTCAAATTTAAAAGC 58.032 33.333 10.79 0.00 0.00 3.51
3212 3792 3.692257 ACAGTTCATCCTCCTTCACTG 57.308 47.619 0.00 0.00 38.09 3.66
3227 3808 9.757227 GAGCATATAGTTTCATCTCTAACAGTT 57.243 33.333 0.00 0.00 0.00 3.16
3244 3826 7.741027 AATGAAACATGTCAGGAGCATATAG 57.259 36.000 0.00 0.00 0.00 1.31
3346 4015 8.610248 ACTCATCAATGCAATTTCATTTTTGA 57.390 26.923 0.17 6.47 31.22 2.69
3373 4042 9.995003 AAAATAGTGCAACAATATCAAGGAAAA 57.005 25.926 0.00 0.00 41.43 2.29
3417 4143 2.162208 AGTATGCCAAGCAACATCAACG 59.838 45.455 0.00 0.00 43.62 4.10
3495 5292 3.064207 CGGCACTACAAGCTACAGAAAA 58.936 45.455 0.00 0.00 0.00 2.29
3502 5299 0.824109 AGATGCGGCACTACAAGCTA 59.176 50.000 4.03 0.00 0.00 3.32
3642 5441 3.477530 GAGCTACAACCAAGTCCAAAGT 58.522 45.455 0.00 0.00 0.00 2.66
3663 5462 1.001378 CAAAGCACCAAACTTCCGAGG 60.001 52.381 0.00 0.00 0.00 4.63
3700 5500 9.754382 CCTTCCATGGAACTAAAATATGAAATG 57.246 33.333 23.63 7.58 0.00 2.32
3825 5636 4.867608 TGTGTCGATGAAAATTAGATGCGA 59.132 37.500 0.00 0.00 0.00 5.10
3855 5667 2.442236 TCCGGTAGTACTAGGTTGGG 57.558 55.000 1.87 0.99 0.00 4.12
3859 5671 5.760131 ACAGTTATTCCGGTAGTACTAGGT 58.240 41.667 1.87 0.00 0.00 3.08
3860 5672 6.060788 AGACAGTTATTCCGGTAGTACTAGG 58.939 44.000 1.87 2.18 0.00 3.02
3861 5673 8.719648 CATAGACAGTTATTCCGGTAGTACTAG 58.280 40.741 1.87 0.00 0.00 2.57
3862 5674 7.173907 GCATAGACAGTTATTCCGGTAGTACTA 59.826 40.741 0.00 0.00 0.00 1.82
3863 5675 6.016443 GCATAGACAGTTATTCCGGTAGTACT 60.016 42.308 0.00 0.00 0.00 2.73
3864 5676 6.148264 GCATAGACAGTTATTCCGGTAGTAC 58.852 44.000 0.00 0.00 0.00 2.73
3865 5677 5.242393 GGCATAGACAGTTATTCCGGTAGTA 59.758 44.000 0.00 0.00 0.00 1.82
3866 5678 4.038883 GGCATAGACAGTTATTCCGGTAGT 59.961 45.833 0.00 0.00 0.00 2.73
3867 5679 4.557205 GGCATAGACAGTTATTCCGGTAG 58.443 47.826 0.00 0.00 0.00 3.18
3868 5680 3.005050 CGGCATAGACAGTTATTCCGGTA 59.995 47.826 0.00 0.00 36.57 4.02
3869 5681 2.223971 CGGCATAGACAGTTATTCCGGT 60.224 50.000 0.00 0.00 36.57 5.28
3870 5682 2.035449 TCGGCATAGACAGTTATTCCGG 59.965 50.000 0.00 0.00 39.35 5.14
3871 5683 3.050619 GTCGGCATAGACAGTTATTCCG 58.949 50.000 7.18 7.18 39.95 4.30
3872 5684 3.050619 CGTCGGCATAGACAGTTATTCC 58.949 50.000 6.94 0.00 40.98 3.01
3873 5685 3.050619 CCGTCGGCATAGACAGTTATTC 58.949 50.000 0.00 0.00 40.98 1.75
3874 5686 3.093717 CCGTCGGCATAGACAGTTATT 57.906 47.619 0.00 0.00 40.98 1.40
3875 5687 2.795175 CCGTCGGCATAGACAGTTAT 57.205 50.000 0.00 0.00 40.98 1.89
3894 5706 4.616181 AAGTTGTCGGCATAGTAAATGC 57.384 40.909 0.00 1.33 43.85 3.56
3895 5707 6.861055 ACAAAAAGTTGTCGGCATAGTAAATG 59.139 34.615 0.00 0.00 45.00 2.32
3896 5708 6.977213 ACAAAAAGTTGTCGGCATAGTAAAT 58.023 32.000 0.00 0.00 45.00 1.40
3897 5709 6.380095 ACAAAAAGTTGTCGGCATAGTAAA 57.620 33.333 0.00 0.00 45.00 2.01
3910 5722 1.007849 CGGCCCCGACAAAAAGTTG 60.008 57.895 0.00 0.00 42.83 3.16
3911 5723 1.449726 GACGGCCCCGACAAAAAGTT 61.450 55.000 14.44 0.00 42.83 2.66
3912 5724 1.895231 GACGGCCCCGACAAAAAGT 60.895 57.895 14.44 0.00 42.83 2.66
3913 5725 2.951458 GACGGCCCCGACAAAAAG 59.049 61.111 14.44 0.00 42.83 2.27
3914 5726 2.973600 CGACGGCCCCGACAAAAA 60.974 61.111 14.44 0.00 42.83 1.94
3915 5727 4.992511 CCGACGGCCCCGACAAAA 62.993 66.667 14.44 0.00 42.83 2.44
3931 5743 3.071580 GCATATCTCCGGCTATGCC 57.928 57.895 22.67 11.61 42.76 4.40
3932 5744 0.539051 AGGCATATCTCCGGCTATGC 59.461 55.000 24.05 24.05 46.08 3.14
3933 5745 3.181471 CCTTAGGCATATCTCCGGCTATG 60.181 52.174 0.00 5.38 39.69 2.23
3934 5746 3.034635 CCTTAGGCATATCTCCGGCTAT 58.965 50.000 0.00 0.00 39.69 2.97
3935 5747 2.457598 CCTTAGGCATATCTCCGGCTA 58.542 52.381 0.00 0.00 39.09 3.93
3936 5748 1.270907 CCTTAGGCATATCTCCGGCT 58.729 55.000 0.00 0.00 41.51 5.52
3937 5749 3.842869 CCTTAGGCATATCTCCGGC 57.157 57.895 0.00 0.00 0.00 6.13
3949 5761 2.115291 GCTTTCTGCGGGCCTTAGG 61.115 63.158 0.84 0.00 0.00 2.69
3950 5762 2.115291 GGCTTTCTGCGGGCCTTAG 61.115 63.158 0.84 0.00 44.05 2.18
3951 5763 2.045340 GGCTTTCTGCGGGCCTTA 60.045 61.111 0.84 0.00 44.05 2.69
3956 5768 3.121030 CTGACGGCTTTCTGCGGG 61.121 66.667 0.00 0.00 44.89 6.13
3957 5769 3.793144 GCTGACGGCTTTCTGCGG 61.793 66.667 0.00 0.00 45.87 5.69
3958 5770 1.083806 TATGCTGACGGCTTTCTGCG 61.084 55.000 7.96 0.00 41.92 5.18
3959 5771 0.654683 CTATGCTGACGGCTTTCTGC 59.345 55.000 7.96 9.13 42.39 4.26
3960 5772 2.299993 TCTATGCTGACGGCTTTCTG 57.700 50.000 7.96 0.00 42.39 3.02
3961 5773 3.334583 TTTCTATGCTGACGGCTTTCT 57.665 42.857 7.96 0.00 42.39 2.52
3962 5774 3.729163 GCTTTTCTATGCTGACGGCTTTC 60.729 47.826 7.96 0.00 42.39 2.62
3963 5775 2.162408 GCTTTTCTATGCTGACGGCTTT 59.838 45.455 7.96 0.00 42.39 3.51
3964 5776 1.740025 GCTTTTCTATGCTGACGGCTT 59.260 47.619 7.96 3.68 42.39 4.35
3965 5777 1.373570 GCTTTTCTATGCTGACGGCT 58.626 50.000 7.96 0.00 42.39 5.52
3966 5778 0.378610 GGCTTTTCTATGCTGACGGC 59.621 55.000 0.00 0.00 42.22 5.68
3967 5779 0.652592 CGGCTTTTCTATGCTGACGG 59.347 55.000 0.00 0.00 37.75 4.79
3968 5780 1.359848 ACGGCTTTTCTATGCTGACG 58.640 50.000 0.00 0.00 38.78 4.35
3969 5781 2.159517 CCAACGGCTTTTCTATGCTGAC 60.160 50.000 0.00 0.00 38.78 3.51
3970 5782 2.083774 CCAACGGCTTTTCTATGCTGA 58.916 47.619 0.00 0.00 38.78 4.26
3971 5783 1.468054 GCCAACGGCTTTTCTATGCTG 60.468 52.381 0.00 0.00 46.69 4.41
3972 5784 0.811281 GCCAACGGCTTTTCTATGCT 59.189 50.000 0.00 0.00 46.69 3.79
3973 5785 3.329114 GCCAACGGCTTTTCTATGC 57.671 52.632 0.00 0.00 46.69 3.14
3984 5796 0.107456 ATCTCCAGCTATGCCAACGG 59.893 55.000 0.00 0.00 0.00 4.44
3985 5797 2.820059 TATCTCCAGCTATGCCAACG 57.180 50.000 0.00 0.00 0.00 4.10
3986 5798 2.746362 GCATATCTCCAGCTATGCCAAC 59.254 50.000 10.17 0.00 41.63 3.77
3987 5799 3.063510 GCATATCTCCAGCTATGCCAA 57.936 47.619 10.17 0.00 41.63 4.52
3988 5800 2.775911 GCATATCTCCAGCTATGCCA 57.224 50.000 10.17 0.00 41.63 4.92
3990 5802 3.736433 CGTAGGCATATCTCCAGCTATGC 60.736 52.174 12.18 12.18 44.75 3.14
3991 5803 3.181482 CCGTAGGCATATCTCCAGCTATG 60.181 52.174 0.00 0.00 46.14 2.23
3992 5804 3.027412 CCGTAGGCATATCTCCAGCTAT 58.973 50.000 0.00 0.00 46.14 2.97
3993 5805 2.447443 CCGTAGGCATATCTCCAGCTA 58.553 52.381 0.00 0.00 46.14 3.32
3994 5806 1.261480 CCGTAGGCATATCTCCAGCT 58.739 55.000 0.00 0.00 46.14 4.24
3995 5807 3.822607 CCGTAGGCATATCTCCAGC 57.177 57.895 0.00 0.00 46.14 4.85
4017 5829 1.217882 CGGCTTTTCTATGCCTACGG 58.782 55.000 0.00 0.00 46.42 4.02
4018 5830 1.859080 GACGGCTTTTCTATGCCTACG 59.141 52.381 0.00 0.00 46.42 3.51
4019 5831 2.866762 CTGACGGCTTTTCTATGCCTAC 59.133 50.000 0.00 0.00 46.42 3.18
4020 5832 2.741878 GCTGACGGCTTTTCTATGCCTA 60.742 50.000 0.00 0.00 46.42 3.93
4021 5833 2.014068 GCTGACGGCTTTTCTATGCCT 61.014 52.381 0.00 0.00 46.42 4.75
4022 5834 0.378610 GCTGACGGCTTTTCTATGCC 59.621 55.000 0.00 0.00 45.25 4.40
4023 5835 1.086696 TGCTGACGGCTTTTCTATGC 58.913 50.000 7.96 0.00 42.39 3.14
4024 5836 4.993584 AGATATGCTGACGGCTTTTCTATG 59.006 41.667 7.96 0.00 42.39 2.23
4025 5837 5.220710 AGATATGCTGACGGCTTTTCTAT 57.779 39.130 7.96 0.00 42.39 1.98
4026 5838 4.501571 GGAGATATGCTGACGGCTTTTCTA 60.502 45.833 12.91 0.00 42.39 2.10
4027 5839 3.462021 GAGATATGCTGACGGCTTTTCT 58.538 45.455 12.82 12.82 42.39 2.52
4028 5840 2.545946 GGAGATATGCTGACGGCTTTTC 59.454 50.000 7.96 6.19 42.39 2.29
4029 5841 2.092968 TGGAGATATGCTGACGGCTTTT 60.093 45.455 7.96 0.00 42.39 2.27
4030 5842 1.486310 TGGAGATATGCTGACGGCTTT 59.514 47.619 7.96 0.00 42.39 3.51
4031 5843 1.123077 TGGAGATATGCTGACGGCTT 58.877 50.000 7.96 3.68 42.39 4.35
4032 5844 1.346062 ATGGAGATATGCTGACGGCT 58.654 50.000 7.96 0.00 42.39 5.52
4033 5845 3.533606 ATATGGAGATATGCTGACGGC 57.466 47.619 0.00 0.00 42.22 5.68
4041 5853 4.550422 CCGTCGGCATATATGGAGATATG 58.450 47.826 14.51 0.00 41.07 1.78
4042 5854 4.855715 CCGTCGGCATATATGGAGATAT 57.144 45.455 14.51 0.00 0.00 1.63
4068 5880 2.338984 GGCCGTCCTATGCCTACG 59.661 66.667 0.00 0.00 44.46 3.51
4082 5894 0.957395 CCATGTCTATGCGGATGGCC 60.957 60.000 0.00 0.00 42.61 5.36
4083 5895 2.548178 CCATGTCTATGCGGATGGC 58.452 57.895 0.00 0.00 43.96 4.40
4084 5896 0.957395 GGCCATGTCTATGCGGATGG 60.957 60.000 0.00 0.00 38.76 3.51
4085 5897 1.293963 CGGCCATGTCTATGCGGATG 61.294 60.000 2.24 0.00 32.79 3.51
4086 5898 1.004560 CGGCCATGTCTATGCGGAT 60.005 57.895 2.24 0.00 32.79 4.18
4087 5899 2.421314 CGGCCATGTCTATGCGGA 59.579 61.111 2.24 0.00 32.79 5.54
4088 5900 2.108976 ACGGCCATGTCTATGCGG 59.891 61.111 2.24 0.00 32.79 5.69
4089 5901 2.246739 CCACGGCCATGTCTATGCG 61.247 63.158 2.24 0.00 32.79 4.73
4090 5902 2.546494 GCCACGGCCATGTCTATGC 61.546 63.158 2.24 0.00 32.79 3.14
4091 5903 2.246739 CGCCACGGCCATGTCTATG 61.247 63.158 2.24 0.00 37.98 2.23
4092 5904 2.108976 CGCCACGGCCATGTCTAT 59.891 61.111 2.24 0.00 37.98 1.98
4093 5905 3.071837 TCGCCACGGCCATGTCTA 61.072 61.111 2.24 0.00 37.98 2.59
4094 5906 4.760047 GTCGCCACGGCCATGTCT 62.760 66.667 2.24 0.00 37.98 3.41
4111 5923 4.483243 CCATCGTCAACCCCGGGG 62.483 72.222 39.18 39.18 42.03 5.73
4112 5924 4.483243 CCCATCGTCAACCCCGGG 62.483 72.222 15.80 15.80 0.00 5.73
4114 5926 4.096003 AGCCCATCGTCAACCCCG 62.096 66.667 0.00 0.00 0.00 5.73
4115 5927 2.438434 CAGCCCATCGTCAACCCC 60.438 66.667 0.00 0.00 0.00 4.95
4116 5928 1.745489 GTCAGCCCATCGTCAACCC 60.745 63.158 0.00 0.00 0.00 4.11
4117 5929 2.100631 CGTCAGCCCATCGTCAACC 61.101 63.158 0.00 0.00 0.00 3.77
4118 5930 2.740714 GCGTCAGCCCATCGTCAAC 61.741 63.158 0.00 0.00 37.42 3.18
4119 5931 2.434185 GCGTCAGCCCATCGTCAA 60.434 61.111 0.00 0.00 37.42 3.18
4129 5941 1.084370 ATAGCTTTGACGGCGTCAGC 61.084 55.000 36.94 35.15 43.69 4.26
4130 5942 0.647410 CATAGCTTTGACGGCGTCAG 59.353 55.000 36.94 28.63 43.69 3.51
4131 5943 1.358725 GCATAGCTTTGACGGCGTCA 61.359 55.000 36.29 36.29 41.09 4.35
4132 5944 1.348594 GCATAGCTTTGACGGCGTC 59.651 57.895 31.68 31.68 34.52 5.19
4133 5945 1.361668 CTGCATAGCTTTGACGGCGT 61.362 55.000 14.65 14.65 34.52 5.68
4134 5946 1.083806 TCTGCATAGCTTTGACGGCG 61.084 55.000 4.80 4.80 34.52 6.46
4135 5947 0.375106 GTCTGCATAGCTTTGACGGC 59.625 55.000 8.49 0.00 0.00 5.68
4136 5948 0.647410 CGTCTGCATAGCTTTGACGG 59.353 55.000 8.49 4.95 40.42 4.79
4137 5949 0.647410 CCGTCTGCATAGCTTTGACG 59.353 55.000 13.60 13.60 42.00 4.35
4138 5950 0.375106 GCCGTCTGCATAGCTTTGAC 59.625 55.000 8.49 0.43 40.77 3.18
4139 5951 0.744414 GGCCGTCTGCATAGCTTTGA 60.744 55.000 8.49 0.00 43.89 2.69
4140 5952 1.718757 GGGCCGTCTGCATAGCTTTG 61.719 60.000 0.00 0.00 43.89 2.77
4141 5953 1.452108 GGGCCGTCTGCATAGCTTT 60.452 57.895 0.00 0.00 43.89 3.51
4142 5954 2.190578 GGGCCGTCTGCATAGCTT 59.809 61.111 0.00 0.00 43.89 3.74
4143 5955 2.765807 AGGGCCGTCTGCATAGCT 60.766 61.111 0.00 0.00 43.89 3.32
4144 5956 2.590007 CAGGGCCGTCTGCATAGC 60.590 66.667 0.00 0.00 43.89 2.97
4145 5957 1.227380 GTCAGGGCCGTCTGCATAG 60.227 63.158 4.23 0.00 43.89 2.23
4146 5958 1.960040 CTGTCAGGGCCGTCTGCATA 61.960 60.000 4.23 0.00 43.89 3.14
4147 5959 3.320879 CTGTCAGGGCCGTCTGCAT 62.321 63.158 4.23 0.00 43.89 3.96
4148 5960 4.007644 CTGTCAGGGCCGTCTGCA 62.008 66.667 4.23 5.38 43.89 4.41
4271 6083 9.995003 GGGCATATTTCCAACAAAATCAATATA 57.005 29.630 0.00 0.00 31.50 0.86
4272 6084 8.716779 AGGGCATATTTCCAACAAAATCAATAT 58.283 29.630 0.00 0.00 31.50 1.28
4273 6085 8.088463 AGGGCATATTTCCAACAAAATCAATA 57.912 30.769 0.00 0.00 31.50 1.90
4274 6086 6.961042 AGGGCATATTTCCAACAAAATCAAT 58.039 32.000 0.00 0.00 31.50 2.57
4275 6087 6.371595 AGGGCATATTTCCAACAAAATCAA 57.628 33.333 0.00 0.00 31.50 2.57
4276 6088 6.894654 TCTAGGGCATATTTCCAACAAAATCA 59.105 34.615 0.00 0.00 31.50 2.57
4277 6089 7.346751 TCTAGGGCATATTTCCAACAAAATC 57.653 36.000 0.00 0.00 31.50 2.17
4278 6090 6.324770 CCTCTAGGGCATATTTCCAACAAAAT 59.675 38.462 0.00 0.00 33.54 1.82
4279 6091 5.656416 CCTCTAGGGCATATTTCCAACAAAA 59.344 40.000 0.00 0.00 0.00 2.44
4280 6092 5.200483 CCTCTAGGGCATATTTCCAACAAA 58.800 41.667 0.00 0.00 0.00 2.83
4281 6093 4.792068 CCTCTAGGGCATATTTCCAACAA 58.208 43.478 0.00 0.00 0.00 2.83
4282 6094 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
4346 6158 9.507329 ACAATTCTAGCATGGATAATAAACGAT 57.493 29.630 0.00 0.00 0.00 3.73
4347 6159 8.902540 ACAATTCTAGCATGGATAATAAACGA 57.097 30.769 0.00 0.00 0.00 3.85
4356 6168 8.829746 TCCTATCAATACAATTCTAGCATGGAT 58.170 33.333 0.00 0.00 0.00 3.41
4357 6169 8.206126 TCCTATCAATACAATTCTAGCATGGA 57.794 34.615 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.