Multiple sequence alignment - TraesCS4A01G039100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G039100 chr4A 100.000 4388 0 0 1 4388 31579227 31583614 0.000000e+00 8104.0
1 TraesCS4A01G039100 chr4A 78.409 440 61 21 1749 2157 13266099 13266535 5.630000e-64 255.0
2 TraesCS4A01G039100 chr4A 95.620 137 6 0 2918 3054 31624793 31624657 2.050000e-53 220.0
3 TraesCS4A01G039100 chr4A 82.464 211 24 6 2657 2861 31624990 31624787 5.830000e-39 172.0
4 TraesCS4A01G039100 chr4D 91.825 1211 74 14 963 2158 436877959 436876759 0.000000e+00 1664.0
5 TraesCS4A01G039100 chr4D 93.488 860 43 7 2555 3401 436876247 436875388 0.000000e+00 1266.0
6 TraesCS4A01G039100 chr4D 88.642 405 33 6 2657 3055 436375524 436375921 8.540000e-132 481.0
7 TraesCS4A01G039100 chr4D 93.870 261 6 1 2181 2431 436876588 436876328 6.880000e-103 385.0
8 TraesCS4A01G039100 chr4D 84.241 349 44 6 2528 2868 437229954 437230299 3.270000e-86 329.0
9 TraesCS4A01G039100 chr4D 76.171 726 86 44 1722 2364 455017446 455016725 7.130000e-78 302.0
10 TraesCS4A01G039100 chr4D 77.471 435 62 18 1748 2157 436982658 436982235 1.230000e-55 228.0
11 TraesCS4A01G039100 chr4D 85.841 226 10 6 604 825 436879566 436879359 2.050000e-53 220.0
12 TraesCS4A01G039100 chr4D 90.741 162 15 0 1527 1688 436877470 436877309 2.660000e-52 217.0
13 TraesCS4A01G039100 chr4D 77.009 448 57 22 1753 2158 436957344 436956901 9.560000e-52 215.0
14 TraesCS4A01G039100 chr4D 91.406 128 10 1 20 147 436879722 436879596 1.620000e-39 174.0
15 TraesCS4A01G039100 chr4D 91.525 118 4 5 821 933 436878078 436877962 1.630000e-34 158.0
16 TraesCS4A01G039100 chr4D 80.172 232 18 8 2175 2378 436722869 436722638 9.830000e-32 148.0
17 TraesCS4A01G039100 chr4D 98.551 69 1 0 3401 3469 436875338 436875270 5.960000e-24 122.0
18 TraesCS4A01G039100 chr4D 91.667 48 4 0 1409 1456 436957547 436957500 2.830000e-07 67.6
19 TraesCS4A01G039100 chr4D 90.000 50 3 2 260 308 68807593 68807545 3.660000e-06 63.9
20 TraesCS4A01G039100 chr4D 93.023 43 3 0 1405 1447 436982928 436982886 3.660000e-06 63.9
21 TraesCS4A01G039100 chr4B 93.807 985 37 10 2432 3405 538677562 538676591 0.000000e+00 1459.0
22 TraesCS4A01G039100 chr4B 90.040 994 59 17 717 1688 538679554 538678579 0.000000e+00 1251.0
23 TraesCS4A01G039100 chr4B 87.828 723 66 18 1452 2158 538678665 538677949 0.000000e+00 828.0
24 TraesCS4A01G039100 chr4B 92.717 357 17 4 3401 3757 538676548 538676201 1.410000e-139 507.0
25 TraesCS4A01G039100 chr4B 91.915 235 18 1 1452 1686 538678740 538678507 1.180000e-85 327.0
26 TraesCS4A01G039100 chr4B 78.447 515 74 25 1679 2158 567470439 567469927 7.130000e-78 302.0
27 TraesCS4A01G039100 chr4B 96.154 182 7 0 2250 2431 538677775 538677594 9.230000e-77 298.0
28 TraesCS4A01G039100 chr4B 85.473 296 30 4 20 304 538690148 538689855 3.320000e-76 296.0
29 TraesCS4A01G039100 chr4B 78.400 375 68 6 2511 2878 539293129 539293497 9.490000e-57 231.0
30 TraesCS4A01G039100 chr4B 88.830 188 15 4 1527 1709 538678815 538678629 4.420000e-55 226.0
31 TraesCS4A01G039100 chr4B 80.139 287 46 3 1695 1970 537799120 537798834 2.070000e-48 204.0
32 TraesCS4A01G039100 chr4B 92.683 41 3 0 1411 1451 538994402 538994362 4.740000e-05 60.2
33 TraesCS4A01G039100 chr6B 91.654 635 43 5 3763 4388 18171930 18171297 0.000000e+00 870.0
34 TraesCS4A01G039100 chr6B 91.352 636 42 9 3763 4388 697683554 697682922 0.000000e+00 857.0
35 TraesCS4A01G039100 chr6B 83.771 647 75 21 3763 4388 643498566 643499203 1.760000e-163 586.0
36 TraesCS4A01G039100 chr6B 91.078 269 24 0 303 571 563531938 563531670 8.970000e-97 364.0
37 TraesCS4A01G039100 chr6B 88.372 86 10 0 4176 4261 714169601 714169516 2.160000e-18 104.0
38 TraesCS4A01G039100 chr1B 91.052 637 44 9 3762 4388 17043897 17044530 0.000000e+00 848.0
39 TraesCS4A01G039100 chr3B 89.780 636 53 7 3763 4388 71449380 71450013 0.000000e+00 804.0
40 TraesCS4A01G039100 chr3B 90.809 272 24 1 298 569 779370552 779370282 3.230000e-96 363.0
41 TraesCS4A01G039100 chr6A 88.050 636 66 6 3763 4388 557552639 557553274 0.000000e+00 745.0
42 TraesCS4A01G039100 chr6A 83.077 650 75 26 3763 4388 18894550 18893912 3.830000e-155 558.0
43 TraesCS4A01G039100 chr6A 91.635 263 22 0 302 564 83062880 83062618 8.970000e-97 364.0
44 TraesCS4A01G039100 chr7B 84.389 647 71 21 3763 4388 25646469 25645832 3.750000e-170 608.0
45 TraesCS4A01G039100 chr5A 84.211 646 73 21 3763 4388 708715018 708714382 6.280000e-168 601.0
46 TraesCS4A01G039100 chr1A 84.056 646 75 20 3763 4388 41154468 41153831 8.120000e-167 597.0
47 TraesCS4A01G039100 chr1A 83.807 457 49 19 3947 4388 547897841 547898287 1.140000e-110 411.0
48 TraesCS4A01G039100 chr1A 83.824 136 19 2 1066 1201 63750705 63750837 4.610000e-25 126.0
49 TraesCS4A01G039100 chr3A 81.385 650 88 24 3763 4388 693574313 693573673 2.360000e-137 499.0
50 TraesCS4A01G039100 chr5B 92.720 261 19 0 303 563 212800081 212799821 1.150000e-100 377.0
51 TraesCS4A01G039100 chr2D 92.045 264 21 0 302 565 395940456 395940193 5.360000e-99 372.0
52 TraesCS4A01G039100 chr7A 91.450 269 23 0 297 565 535468306 535468574 1.930000e-98 370.0
53 TraesCS4A01G039100 chr5D 91.481 270 22 1 301 569 558926347 558926616 1.930000e-98 370.0
54 TraesCS4A01G039100 chr1D 92.075 265 18 3 303 565 258094110 258094373 1.930000e-98 370.0
55 TraesCS4A01G039100 chr6D 91.985 262 21 0 303 564 24007395 24007134 6.930000e-98 368.0
56 TraesCS4A01G039100 chr2A 93.478 46 1 2 260 304 739442992 739443036 2.830000e-07 67.6
57 TraesCS4A01G039100 chr2A 100.000 28 0 0 1108 1135 452588292 452588265 8.000000e-03 52.8
58 TraesCS4A01G039100 chr2B 100.000 28 0 0 1108 1135 407908562 407908535 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G039100 chr4A 31579227 31583614 4387 False 8104.000000 8104 100.000000 1 4388 1 chr4A.!!$F2 4387
1 TraesCS4A01G039100 chr4D 436875270 436879722 4452 True 525.750000 1664 92.155875 20 3469 8 chr4D.!!$R4 3449
2 TraesCS4A01G039100 chr4D 455016725 455017446 721 True 302.000000 302 76.171000 1722 2364 1 chr4D.!!$R3 642
3 TraesCS4A01G039100 chr4B 538676201 538679554 3353 True 699.428571 1459 91.613000 717 3757 7 chr4B.!!$R5 3040
4 TraesCS4A01G039100 chr4B 567469927 567470439 512 True 302.000000 302 78.447000 1679 2158 1 chr4B.!!$R4 479
5 TraesCS4A01G039100 chr6B 18171297 18171930 633 True 870.000000 870 91.654000 3763 4388 1 chr6B.!!$R1 625
6 TraesCS4A01G039100 chr6B 697682922 697683554 632 True 857.000000 857 91.352000 3763 4388 1 chr6B.!!$R3 625
7 TraesCS4A01G039100 chr6B 643498566 643499203 637 False 586.000000 586 83.771000 3763 4388 1 chr6B.!!$F1 625
8 TraesCS4A01G039100 chr1B 17043897 17044530 633 False 848.000000 848 91.052000 3762 4388 1 chr1B.!!$F1 626
9 TraesCS4A01G039100 chr3B 71449380 71450013 633 False 804.000000 804 89.780000 3763 4388 1 chr3B.!!$F1 625
10 TraesCS4A01G039100 chr6A 557552639 557553274 635 False 745.000000 745 88.050000 3763 4388 1 chr6A.!!$F1 625
11 TraesCS4A01G039100 chr6A 18893912 18894550 638 True 558.000000 558 83.077000 3763 4388 1 chr6A.!!$R1 625
12 TraesCS4A01G039100 chr7B 25645832 25646469 637 True 608.000000 608 84.389000 3763 4388 1 chr7B.!!$R1 625
13 TraesCS4A01G039100 chr5A 708714382 708715018 636 True 601.000000 601 84.211000 3763 4388 1 chr5A.!!$R1 625
14 TraesCS4A01G039100 chr1A 41153831 41154468 637 True 597.000000 597 84.056000 3763 4388 1 chr1A.!!$R1 625
15 TraesCS4A01G039100 chr3A 693573673 693574313 640 True 499.000000 499 81.385000 3763 4388 1 chr3A.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.035317 ACGCACTCTTCTGCCATTGA 59.965 50.000 0.00 0.00 33.18 2.57 F
233 234 0.110238 CGTTCTGACGGCAACAATGG 60.110 55.000 0.00 0.00 45.32 3.16 F
251 252 0.177373 GGTCGTTAGGTGGCTTAGGG 59.823 60.000 0.00 0.00 0.00 3.53 F
701 706 0.249280 ACGTGTCTGTCAATGACGCA 60.249 50.000 9.00 5.09 42.92 5.24 F
1397 2744 0.651042 GTCGTCTCGTCGATACAGCG 60.651 60.000 10.85 5.05 41.78 5.18 F
2971 4760 1.302033 CAGTCTGTCCTGCCACCAC 60.302 63.158 0.00 0.00 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1173 2502 0.179026 CCTCATGATCCACAGGCAGG 60.179 60.000 0.0 0.00 0.00 4.85 R
1885 3406 0.617820 ACCCTGTGGCGTATCTCCTT 60.618 55.000 0.0 0.00 33.59 3.36 R
2144 3694 2.198827 TTGGACTTTGGACATGCGAT 57.801 45.000 0.0 0.00 0.00 4.58 R
2690 4475 0.541392 TGTCTATGGCGCCTTCACAT 59.459 50.000 29.7 14.99 0.00 3.21 R
3182 4979 1.478105 GGCCAGGGAGCAAACAAATAG 59.522 52.381 0.0 0.00 0.00 1.73 R
4295 6178 0.179108 GATCTTCGGGTCAACGGAGG 60.179 60.000 0.0 0.00 39.91 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.459592 GTTTCTCATTGTGCGTACGCT 59.540 47.619 36.99 17.59 42.51 5.07
64 65 3.167425 GCGTACGCTATGATGAGATCTG 58.833 50.000 31.95 0.00 38.26 2.90
70 71 3.730362 CGCTATGATGAGATCTGGTAGCG 60.730 52.174 19.87 19.87 44.01 4.26
106 107 2.702592 ACAAGGGTTCAACAACGAGA 57.297 45.000 0.00 0.00 32.68 4.04
110 111 4.124238 CAAGGGTTCAACAACGAGAACTA 58.876 43.478 0.00 0.00 42.76 2.24
127 128 0.599558 CTACGGTTCCGAGGTGTTGA 59.400 55.000 18.28 0.00 0.00 3.18
147 148 2.660064 CCTTAGGGGCACGCACTCT 61.660 63.158 0.00 0.00 46.88 3.24
148 149 1.296715 CTTAGGGGCACGCACTCTT 59.703 57.895 0.00 0.00 46.88 2.85
149 150 0.741221 CTTAGGGGCACGCACTCTTC 60.741 60.000 0.00 0.00 46.88 2.87
150 151 1.192146 TTAGGGGCACGCACTCTTCT 61.192 55.000 0.00 0.00 46.88 2.85
151 152 1.888436 TAGGGGCACGCACTCTTCTG 61.888 60.000 0.00 0.00 46.88 3.02
152 153 3.426568 GGGCACGCACTCTTCTGC 61.427 66.667 0.00 0.00 0.00 4.26
153 154 3.426568 GGCACGCACTCTTCTGCC 61.427 66.667 0.00 0.00 42.41 4.85
154 155 2.666190 GCACGCACTCTTCTGCCA 60.666 61.111 0.00 0.00 33.18 4.92
155 156 2.037136 GCACGCACTCTTCTGCCAT 61.037 57.895 0.00 0.00 33.18 4.40
157 158 0.167470 CACGCACTCTTCTGCCATTG 59.833 55.000 0.00 0.00 33.18 2.82
158 159 0.035317 ACGCACTCTTCTGCCATTGA 59.965 50.000 0.00 0.00 33.18 2.57
159 160 0.445436 CGCACTCTTCTGCCATTGAC 59.555 55.000 0.00 0.00 33.18 3.18
160 161 1.527034 GCACTCTTCTGCCATTGACA 58.473 50.000 0.00 0.00 0.00 3.58
161 162 1.881973 GCACTCTTCTGCCATTGACAA 59.118 47.619 0.00 0.00 0.00 3.18
162 163 2.490903 GCACTCTTCTGCCATTGACAAT 59.509 45.455 0.00 0.00 0.00 2.71
163 164 3.691118 GCACTCTTCTGCCATTGACAATA 59.309 43.478 0.00 0.00 0.00 1.90
164 165 4.337555 GCACTCTTCTGCCATTGACAATAT 59.662 41.667 0.00 0.00 0.00 1.28
166 167 5.587443 CACTCTTCTGCCATTGACAATATCA 59.413 40.000 0.00 1.33 34.65 2.15
167 168 5.587844 ACTCTTCTGCCATTGACAATATCAC 59.412 40.000 0.00 0.00 36.92 3.06
169 170 5.355071 TCTTCTGCCATTGACAATATCACAC 59.645 40.000 0.00 0.00 36.92 3.82
170 171 3.947196 TCTGCCATTGACAATATCACACC 59.053 43.478 0.00 0.00 36.92 4.16
171 172 3.694926 TGCCATTGACAATATCACACCA 58.305 40.909 0.00 0.00 36.92 4.17
173 174 3.489738 GCCATTGACAATATCACACCAGC 60.490 47.826 0.00 0.00 36.92 4.85
176 177 3.266510 TGACAATATCACACCAGCTCC 57.733 47.619 0.00 0.00 29.99 4.70
178 179 1.134401 ACAATATCACACCAGCTCCGG 60.134 52.381 0.00 0.00 0.00 5.14
179 180 1.134401 CAATATCACACCAGCTCCGGT 60.134 52.381 0.00 0.00 41.07 5.28
180 181 2.082140 ATATCACACCAGCTCCGGTA 57.918 50.000 0.00 0.00 37.07 4.02
181 182 2.082140 TATCACACCAGCTCCGGTAT 57.918 50.000 0.00 0.00 37.07 2.73
182 183 1.204146 ATCACACCAGCTCCGGTATT 58.796 50.000 0.00 0.00 37.07 1.89
183 184 0.249120 TCACACCAGCTCCGGTATTG 59.751 55.000 0.00 0.00 37.07 1.90
184 185 0.744414 CACACCAGCTCCGGTATTGG 60.744 60.000 15.92 15.92 37.07 3.16
185 186 0.907704 ACACCAGCTCCGGTATTGGA 60.908 55.000 21.81 0.00 37.07 3.53
186 187 0.469917 CACCAGCTCCGGTATTGGAT 59.530 55.000 21.81 8.28 37.07 3.41
187 188 0.759346 ACCAGCTCCGGTATTGGATC 59.241 55.000 21.81 0.00 37.57 3.36
188 189 0.758734 CCAGCTCCGGTATTGGATCA 59.241 55.000 13.32 0.00 37.41 2.92
189 190 1.140852 CCAGCTCCGGTATTGGATCAA 59.859 52.381 13.32 0.00 37.41 2.57
190 191 2.213499 CAGCTCCGGTATTGGATCAAC 58.787 52.381 0.00 0.00 37.41 3.18
191 192 1.202533 AGCTCCGGTATTGGATCAACG 60.203 52.381 0.00 0.00 37.41 4.10
192 193 1.202486 GCTCCGGTATTGGATCAACGA 60.202 52.381 0.00 0.00 37.41 3.85
193 194 2.548067 GCTCCGGTATTGGATCAACGAT 60.548 50.000 0.00 0.00 37.41 3.73
194 195 3.305813 GCTCCGGTATTGGATCAACGATA 60.306 47.826 0.00 0.00 37.41 2.92
195 196 4.486090 CTCCGGTATTGGATCAACGATAG 58.514 47.826 0.00 0.00 37.41 2.08
196 197 2.993899 CCGGTATTGGATCAACGATAGC 59.006 50.000 0.00 0.00 42.67 2.97
197 198 2.661675 CGGTATTGGATCAACGATAGCG 59.338 50.000 13.09 13.09 46.06 4.26
198 199 2.993899 GGTATTGGATCAACGATAGCGG 59.006 50.000 4.97 0.00 43.17 5.52
199 200 1.512926 ATTGGATCAACGATAGCGGC 58.487 50.000 4.97 0.00 43.17 6.53
200 201 0.874175 TTGGATCAACGATAGCGGCG 60.874 55.000 4.97 0.51 43.17 6.46
201 202 1.299926 GGATCAACGATAGCGGCGT 60.300 57.895 9.37 0.00 44.94 5.68
202 203 1.548973 GGATCAACGATAGCGGCGTG 61.549 60.000 9.37 0.00 41.75 5.34
203 204 0.870307 GATCAACGATAGCGGCGTGT 60.870 55.000 9.37 0.00 41.75 4.49
204 205 1.145759 ATCAACGATAGCGGCGTGTG 61.146 55.000 9.37 0.00 41.75 3.82
205 206 2.508439 AACGATAGCGGCGTGTGG 60.508 61.111 9.37 0.00 41.75 4.17
207 208 4.873129 CGATAGCGGCGTGTGGCT 62.873 66.667 9.37 0.00 42.94 4.75
208 209 2.415843 GATAGCGGCGTGTGGCTA 59.584 61.111 9.37 0.45 45.01 3.93
209 210 1.949631 GATAGCGGCGTGTGGCTAC 60.950 63.158 9.37 0.00 43.86 3.58
210 211 3.768185 ATAGCGGCGTGTGGCTACG 62.768 63.158 9.37 9.86 43.86 3.51
216 217 4.415332 CGTGTGGCTACGGCTCGT 62.415 66.667 5.58 5.58 44.35 4.18
217 218 2.048503 GTGTGGCTACGGCTCGTT 60.049 61.111 5.57 0.00 41.54 3.85
218 219 2.092882 GTGTGGCTACGGCTCGTTC 61.093 63.158 5.57 0.00 41.54 3.95
219 220 2.273179 TGTGGCTACGGCTCGTTCT 61.273 57.895 5.57 0.00 41.54 3.01
220 221 1.805945 GTGGCTACGGCTCGTTCTG 60.806 63.158 5.57 0.00 41.54 3.02
221 222 1.974875 TGGCTACGGCTCGTTCTGA 60.975 57.895 5.57 0.00 41.54 3.27
222 223 1.516603 GGCTACGGCTCGTTCTGAC 60.517 63.158 5.57 0.00 41.54 3.51
232 233 3.366392 CGTTCTGACGGCAACAATG 57.634 52.632 0.00 0.00 45.32 2.82
233 234 0.110238 CGTTCTGACGGCAACAATGG 60.110 55.000 0.00 0.00 45.32 3.16
234 235 0.951558 GTTCTGACGGCAACAATGGT 59.048 50.000 0.00 0.00 0.00 3.55
235 236 1.069227 GTTCTGACGGCAACAATGGTC 60.069 52.381 0.00 0.00 0.00 4.02
236 237 0.948623 TCTGACGGCAACAATGGTCG 60.949 55.000 0.00 0.00 32.17 4.79
237 238 1.227704 TGACGGCAACAATGGTCGT 60.228 52.632 0.00 0.00 36.74 4.34
238 239 0.816018 TGACGGCAACAATGGTCGTT 60.816 50.000 0.00 0.00 34.06 3.85
239 240 1.149987 GACGGCAACAATGGTCGTTA 58.850 50.000 0.00 0.00 34.06 3.18
240 241 1.127951 GACGGCAACAATGGTCGTTAG 59.872 52.381 0.00 0.00 34.06 2.34
241 242 0.446222 CGGCAACAATGGTCGTTAGG 59.554 55.000 0.00 0.00 0.00 2.69
242 243 1.530323 GGCAACAATGGTCGTTAGGT 58.470 50.000 0.00 0.00 0.00 3.08
243 244 1.199097 GGCAACAATGGTCGTTAGGTG 59.801 52.381 0.00 0.00 0.00 4.00
244 245 1.199097 GCAACAATGGTCGTTAGGTGG 59.801 52.381 0.00 0.00 0.00 4.61
245 246 1.199097 CAACAATGGTCGTTAGGTGGC 59.801 52.381 0.00 0.00 0.00 5.01
246 247 0.690762 ACAATGGTCGTTAGGTGGCT 59.309 50.000 0.00 0.00 0.00 4.75
247 248 1.073284 ACAATGGTCGTTAGGTGGCTT 59.927 47.619 0.00 0.00 0.00 4.35
248 249 2.303600 ACAATGGTCGTTAGGTGGCTTA 59.696 45.455 0.00 0.00 0.00 3.09
249 250 2.936498 CAATGGTCGTTAGGTGGCTTAG 59.064 50.000 0.00 0.00 0.00 2.18
250 251 0.899720 TGGTCGTTAGGTGGCTTAGG 59.100 55.000 0.00 0.00 0.00 2.69
251 252 0.177373 GGTCGTTAGGTGGCTTAGGG 59.823 60.000 0.00 0.00 0.00 3.53
252 253 1.188863 GTCGTTAGGTGGCTTAGGGA 58.811 55.000 0.00 0.00 0.00 4.20
253 254 1.134877 GTCGTTAGGTGGCTTAGGGAC 60.135 57.143 0.00 0.00 0.00 4.46
254 255 0.177373 CGTTAGGTGGCTTAGGGACC 59.823 60.000 0.00 0.00 0.00 4.46
255 256 1.581223 GTTAGGTGGCTTAGGGACCT 58.419 55.000 0.00 0.00 42.87 3.85
256 257 1.485480 GTTAGGTGGCTTAGGGACCTC 59.515 57.143 0.00 0.00 40.67 3.85
257 258 0.396695 TAGGTGGCTTAGGGACCTCG 60.397 60.000 0.00 0.00 40.67 4.63
258 259 1.684734 GGTGGCTTAGGGACCTCGA 60.685 63.158 0.00 0.00 0.00 4.04
259 260 1.049289 GGTGGCTTAGGGACCTCGAT 61.049 60.000 0.00 0.00 0.00 3.59
260 261 0.831307 GTGGCTTAGGGACCTCGATT 59.169 55.000 0.00 0.00 0.00 3.34
261 262 1.209747 GTGGCTTAGGGACCTCGATTT 59.790 52.381 0.00 0.00 0.00 2.17
262 263 1.913419 TGGCTTAGGGACCTCGATTTT 59.087 47.619 0.00 0.00 0.00 1.82
263 264 3.109151 TGGCTTAGGGACCTCGATTTTA 58.891 45.455 0.00 0.00 0.00 1.52
264 265 3.714798 TGGCTTAGGGACCTCGATTTTAT 59.285 43.478 0.00 0.00 0.00 1.40
265 266 4.165372 TGGCTTAGGGACCTCGATTTTATT 59.835 41.667 0.00 0.00 0.00 1.40
266 267 5.367352 TGGCTTAGGGACCTCGATTTTATTA 59.633 40.000 0.00 0.00 0.00 0.98
267 268 6.043938 TGGCTTAGGGACCTCGATTTTATTAT 59.956 38.462 0.00 0.00 0.00 1.28
268 269 6.371825 GGCTTAGGGACCTCGATTTTATTATG 59.628 42.308 0.00 0.00 0.00 1.90
269 270 6.935208 GCTTAGGGACCTCGATTTTATTATGT 59.065 38.462 0.00 0.00 0.00 2.29
270 271 7.444487 GCTTAGGGACCTCGATTTTATTATGTT 59.556 37.037 0.00 0.00 0.00 2.71
271 272 9.338622 CTTAGGGACCTCGATTTTATTATGTTT 57.661 33.333 0.00 0.00 0.00 2.83
272 273 7.803279 AGGGACCTCGATTTTATTATGTTTC 57.197 36.000 0.00 0.00 0.00 2.78
273 274 6.482308 AGGGACCTCGATTTTATTATGTTTCG 59.518 38.462 0.00 0.00 0.00 3.46
274 275 6.480981 GGGACCTCGATTTTATTATGTTTCGA 59.519 38.462 0.00 0.00 34.77 3.71
275 276 7.342942 GGACCTCGATTTTATTATGTTTCGAC 58.657 38.462 0.00 0.00 32.76 4.20
276 277 7.224167 GGACCTCGATTTTATTATGTTTCGACT 59.776 37.037 0.00 0.00 32.76 4.18
277 278 7.906160 ACCTCGATTTTATTATGTTTCGACTG 58.094 34.615 0.00 0.00 32.76 3.51
278 279 6.846283 CCTCGATTTTATTATGTTTCGACTGC 59.154 38.462 0.00 0.00 32.76 4.40
279 280 7.254455 CCTCGATTTTATTATGTTTCGACTGCT 60.254 37.037 0.00 0.00 32.76 4.24
280 281 7.970384 TCGATTTTATTATGTTTCGACTGCTT 58.030 30.769 0.00 0.00 31.38 3.91
281 282 8.447833 TCGATTTTATTATGTTTCGACTGCTTT 58.552 29.630 0.00 0.00 31.38 3.51
282 283 8.515473 CGATTTTATTATGTTTCGACTGCTTTG 58.485 33.333 0.00 0.00 0.00 2.77
283 284 9.341899 GATTTTATTATGTTTCGACTGCTTTGT 57.658 29.630 0.00 0.00 0.00 2.83
285 286 9.601971 TTTTATTATGTTTCGACTGCTTTGTAC 57.398 29.630 0.00 0.00 0.00 2.90
286 287 8.542497 TTATTATGTTTCGACTGCTTTGTACT 57.458 30.769 0.00 0.00 0.00 2.73
287 288 6.854496 TTATGTTTCGACTGCTTTGTACTT 57.146 33.333 0.00 0.00 0.00 2.24
288 289 4.789095 TGTTTCGACTGCTTTGTACTTC 57.211 40.909 0.00 0.00 0.00 3.01
289 290 3.558418 TGTTTCGACTGCTTTGTACTTCC 59.442 43.478 0.00 0.00 0.00 3.46
290 291 3.462483 TTCGACTGCTTTGTACTTCCA 57.538 42.857 0.00 0.00 0.00 3.53
291 292 3.462483 TCGACTGCTTTGTACTTCCAA 57.538 42.857 0.00 0.00 0.00 3.53
292 293 4.002906 TCGACTGCTTTGTACTTCCAAT 57.997 40.909 0.00 0.00 0.00 3.16
293 294 3.745975 TCGACTGCTTTGTACTTCCAATG 59.254 43.478 0.00 0.00 0.00 2.82
294 295 3.745975 CGACTGCTTTGTACTTCCAATGA 59.254 43.478 0.00 0.00 0.00 2.57
295 296 4.213270 CGACTGCTTTGTACTTCCAATGAA 59.787 41.667 0.00 0.00 0.00 2.57
296 297 5.438761 ACTGCTTTGTACTTCCAATGAAC 57.561 39.130 0.00 0.00 0.00 3.18
297 298 5.133221 ACTGCTTTGTACTTCCAATGAACT 58.867 37.500 0.00 0.00 0.00 3.01
298 299 5.594317 ACTGCTTTGTACTTCCAATGAACTT 59.406 36.000 0.00 0.00 0.00 2.66
299 300 6.096846 ACTGCTTTGTACTTCCAATGAACTTT 59.903 34.615 0.00 0.00 0.00 2.66
300 301 6.872920 TGCTTTGTACTTCCAATGAACTTTT 58.127 32.000 0.00 0.00 0.00 2.27
301 302 8.001881 TGCTTTGTACTTCCAATGAACTTTTA 57.998 30.769 0.00 0.00 0.00 1.52
302 303 8.637986 TGCTTTGTACTTCCAATGAACTTTTAT 58.362 29.630 0.00 0.00 0.00 1.40
307 308 9.444600 TGTACTTCCAATGAACTTTTATACTCC 57.555 33.333 0.00 0.00 0.00 3.85
308 309 7.939784 ACTTCCAATGAACTTTTATACTCCC 57.060 36.000 0.00 0.00 0.00 4.30
309 310 7.699878 ACTTCCAATGAACTTTTATACTCCCT 58.300 34.615 0.00 0.00 0.00 4.20
310 311 7.829706 ACTTCCAATGAACTTTTATACTCCCTC 59.170 37.037 0.00 0.00 0.00 4.30
311 312 6.659824 TCCAATGAACTTTTATACTCCCTCC 58.340 40.000 0.00 0.00 0.00 4.30
312 313 5.527582 CCAATGAACTTTTATACTCCCTCCG 59.472 44.000 0.00 0.00 0.00 4.63
313 314 6.346096 CAATGAACTTTTATACTCCCTCCGA 58.654 40.000 0.00 0.00 0.00 4.55
314 315 6.749036 ATGAACTTTTATACTCCCTCCGAT 57.251 37.500 0.00 0.00 0.00 4.18
315 316 6.555463 TGAACTTTTATACTCCCTCCGATT 57.445 37.500 0.00 0.00 0.00 3.34
316 317 6.954232 TGAACTTTTATACTCCCTCCGATTT 58.046 36.000 0.00 0.00 0.00 2.17
317 318 7.399634 TGAACTTTTATACTCCCTCCGATTTT 58.600 34.615 0.00 0.00 0.00 1.82
318 319 8.542080 TGAACTTTTATACTCCCTCCGATTTTA 58.458 33.333 0.00 0.00 0.00 1.52
319 320 8.728337 AACTTTTATACTCCCTCCGATTTTAC 57.272 34.615 0.00 0.00 0.00 2.01
320 321 8.087303 ACTTTTATACTCCCTCCGATTTTACT 57.913 34.615 0.00 0.00 0.00 2.24
321 322 8.546322 ACTTTTATACTCCCTCCGATTTTACTT 58.454 33.333 0.00 0.00 0.00 2.24
323 324 9.822185 TTTTATACTCCCTCCGATTTTACTTAC 57.178 33.333 0.00 0.00 0.00 2.34
324 325 8.773033 TTATACTCCCTCCGATTTTACTTACT 57.227 34.615 0.00 0.00 0.00 2.24
325 326 5.595257 ACTCCCTCCGATTTTACTTACTC 57.405 43.478 0.00 0.00 0.00 2.59
326 327 4.405036 ACTCCCTCCGATTTTACTTACTCC 59.595 45.833 0.00 0.00 0.00 3.85
327 328 4.617593 TCCCTCCGATTTTACTTACTCCT 58.382 43.478 0.00 0.00 0.00 3.69
328 329 4.648307 TCCCTCCGATTTTACTTACTCCTC 59.352 45.833 0.00 0.00 0.00 3.71
329 330 4.404715 CCCTCCGATTTTACTTACTCCTCA 59.595 45.833 0.00 0.00 0.00 3.86
330 331 5.070580 CCCTCCGATTTTACTTACTCCTCAT 59.929 44.000 0.00 0.00 0.00 2.90
331 332 6.267014 CCCTCCGATTTTACTTACTCCTCATA 59.733 42.308 0.00 0.00 0.00 2.15
332 333 7.038941 CCCTCCGATTTTACTTACTCCTCATAT 60.039 40.741 0.00 0.00 0.00 1.78
333 334 8.368668 CCTCCGATTTTACTTACTCCTCATATT 58.631 37.037 0.00 0.00 0.00 1.28
336 337 9.141400 CCGATTTTACTTACTCCTCATATTAGC 57.859 37.037 0.00 0.00 0.00 3.09
337 338 9.915629 CGATTTTACTTACTCCTCATATTAGCT 57.084 33.333 0.00 0.00 0.00 3.32
341 342 9.832445 TTTACTTACTCCTCATATTAGCTTTGG 57.168 33.333 0.00 0.00 0.00 3.28
342 343 7.439108 ACTTACTCCTCATATTAGCTTTGGT 57.561 36.000 0.00 0.00 0.00 3.67
343 344 7.501844 ACTTACTCCTCATATTAGCTTTGGTC 58.498 38.462 0.00 0.00 0.00 4.02
344 345 5.957771 ACTCCTCATATTAGCTTTGGTCA 57.042 39.130 0.00 0.00 0.00 4.02
345 346 6.313519 ACTCCTCATATTAGCTTTGGTCAA 57.686 37.500 0.00 0.00 0.00 3.18
346 347 6.721318 ACTCCTCATATTAGCTTTGGTCAAA 58.279 36.000 0.00 0.00 0.00 2.69
357 358 5.410924 AGCTTTGGTCAAAGTCAAACTTTC 58.589 37.500 20.33 5.09 44.47 2.62
358 359 5.185828 AGCTTTGGTCAAAGTCAAACTTTCT 59.814 36.000 20.33 6.87 44.47 2.52
359 360 6.377146 AGCTTTGGTCAAAGTCAAACTTTCTA 59.623 34.615 20.33 0.00 44.47 2.10
360 361 7.033185 GCTTTGGTCAAAGTCAAACTTTCTAA 58.967 34.615 20.33 0.00 44.47 2.10
361 362 7.544217 GCTTTGGTCAAAGTCAAACTTTCTAAA 59.456 33.333 20.33 3.39 44.47 1.85
362 363 8.751302 TTTGGTCAAAGTCAAACTTTCTAAAC 57.249 30.769 2.19 0.51 44.47 2.01
363 364 7.696992 TGGTCAAAGTCAAACTTTCTAAACT 57.303 32.000 2.19 0.00 44.47 2.66
364 365 8.117813 TGGTCAAAGTCAAACTTTCTAAACTT 57.882 30.769 2.19 0.00 44.47 2.66
365 366 8.581578 TGGTCAAAGTCAAACTTTCTAAACTTT 58.418 29.630 2.19 0.00 44.47 2.66
366 367 9.073368 GGTCAAAGTCAAACTTTCTAAACTTTC 57.927 33.333 2.19 0.00 44.47 2.62
367 368 9.620660 GTCAAAGTCAAACTTTCTAAACTTTCA 57.379 29.630 2.19 0.00 44.47 2.69
368 369 9.620660 TCAAAGTCAAACTTTCTAAACTTTCAC 57.379 29.630 2.19 0.00 44.47 3.18
369 370 9.405587 CAAAGTCAAACTTTCTAAACTTTCACA 57.594 29.630 2.19 0.00 44.47 3.58
370 371 9.974980 AAAGTCAAACTTTCTAAACTTTCACAA 57.025 25.926 0.00 0.00 44.47 3.33
371 372 9.974980 AAGTCAAACTTTCTAAACTTTCACAAA 57.025 25.926 0.00 0.00 34.11 2.83
372 373 9.626045 AGTCAAACTTTCTAAACTTTCACAAAG 57.374 29.630 0.00 0.00 44.10 2.77
515 516 8.716646 AACTTGGTCAAATTTTAGGAAGTTTG 57.283 30.769 8.39 2.02 41.29 2.93
516 517 8.073467 ACTTGGTCAAATTTTAGGAAGTTTGA 57.927 30.769 5.93 5.93 44.28 2.69
539 540 6.851222 ACTTCAGTCAATTCTAATATGCGG 57.149 37.500 0.00 0.00 0.00 5.69
540 541 6.582636 ACTTCAGTCAATTCTAATATGCGGA 58.417 36.000 0.00 0.00 0.00 5.54
541 542 6.703607 ACTTCAGTCAATTCTAATATGCGGAG 59.296 38.462 0.00 0.00 0.00 4.63
542 543 6.161855 TCAGTCAATTCTAATATGCGGAGT 57.838 37.500 0.00 0.00 0.00 3.85
543 544 7.284919 TCAGTCAATTCTAATATGCGGAGTA 57.715 36.000 0.00 0.00 0.00 2.59
544 545 7.722363 TCAGTCAATTCTAATATGCGGAGTAA 58.278 34.615 0.00 0.00 0.00 2.24
545 546 8.201464 TCAGTCAATTCTAATATGCGGAGTAAA 58.799 33.333 0.00 0.00 0.00 2.01
546 547 8.993121 CAGTCAATTCTAATATGCGGAGTAAAT 58.007 33.333 0.00 0.00 0.00 1.40
554 555 9.531942 TCTAATATGCGGAGTAAATAAAAACGA 57.468 29.630 0.00 0.00 0.00 3.85
557 558 5.285798 TGCGGAGTAAATAAAAACGAAGG 57.714 39.130 0.00 0.00 0.00 3.46
558 559 4.154556 TGCGGAGTAAATAAAAACGAAGGG 59.845 41.667 0.00 0.00 0.00 3.95
559 560 4.392754 GCGGAGTAAATAAAAACGAAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
560 561 5.446875 GCGGAGTAAATAAAAACGAAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
561 562 5.640783 CGGAGTAAATAAAAACGAAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
562 563 6.813152 CGGAGTAAATAAAAACGAAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
563 564 7.493645 CGGAGTAAATAAAAACGAAGGGAGTAT 59.506 37.037 0.00 0.00 0.00 2.12
564 565 9.170734 GGAGTAAATAAAAACGAAGGGAGTATT 57.829 33.333 0.00 0.00 0.00 1.89
575 576 9.984190 AAACGAAGGGAGTATTAGATTTAGATC 57.016 33.333 0.00 0.00 0.00 2.75
576 577 8.943594 ACGAAGGGAGTATTAGATTTAGATCT 57.056 34.615 0.00 0.00 44.67 2.75
577 578 9.369672 ACGAAGGGAGTATTAGATTTAGATCTT 57.630 33.333 0.00 0.00 42.55 2.40
653 658 3.004862 CGGTGAGTACCCCAAATGTTAC 58.995 50.000 0.00 0.00 44.53 2.50
654 659 3.349927 GGTGAGTACCCCAAATGTTACC 58.650 50.000 0.00 0.00 41.36 2.85
660 665 3.232720 ACCCCAAATGTTACCGAAACT 57.767 42.857 2.91 0.00 38.99 2.66
666 671 4.320202 CCAAATGTTACCGAAACTGTCTGG 60.320 45.833 2.91 0.00 38.99 3.86
676 681 3.214328 GAAACTGTCTGGTTGACCATGT 58.786 45.455 2.85 0.00 46.46 3.21
699 704 2.097396 GTGAACGTGTCTGTCAATGACG 60.097 50.000 9.00 4.08 37.26 4.35
700 705 0.859232 AACGTGTCTGTCAATGACGC 59.141 50.000 9.00 2.51 40.38 5.19
701 706 0.249280 ACGTGTCTGTCAATGACGCA 60.249 50.000 9.00 5.09 42.92 5.24
702 707 0.858583 CGTGTCTGTCAATGACGCAA 59.141 50.000 9.00 0.00 42.92 4.85
703 708 1.460743 CGTGTCTGTCAATGACGCAAT 59.539 47.619 9.00 0.00 42.92 3.56
704 709 2.096268 CGTGTCTGTCAATGACGCAATT 60.096 45.455 9.00 0.00 42.92 2.32
705 710 3.122780 CGTGTCTGTCAATGACGCAATTA 59.877 43.478 9.00 0.00 42.92 1.40
706 711 4.201714 CGTGTCTGTCAATGACGCAATTAT 60.202 41.667 9.00 0.00 42.92 1.28
707 712 5.005299 CGTGTCTGTCAATGACGCAATTATA 59.995 40.000 9.00 0.00 42.92 0.98
708 713 6.292328 CGTGTCTGTCAATGACGCAATTATAT 60.292 38.462 9.00 0.00 42.92 0.86
709 714 6.847792 GTGTCTGTCAATGACGCAATTATATG 59.152 38.462 9.00 0.00 42.50 1.78
710 715 6.760770 TGTCTGTCAATGACGCAATTATATGA 59.239 34.615 9.00 0.00 37.26 2.15
711 716 7.442062 TGTCTGTCAATGACGCAATTATATGAT 59.558 33.333 9.00 0.00 37.26 2.45
712 717 7.743400 GTCTGTCAATGACGCAATTATATGATG 59.257 37.037 9.00 0.00 34.95 3.07
713 718 7.656948 TCTGTCAATGACGCAATTATATGATGA 59.343 33.333 9.00 0.00 34.95 2.92
714 719 8.326680 TGTCAATGACGCAATTATATGATGAT 57.673 30.769 9.00 0.00 34.95 2.45
715 720 8.445493 TGTCAATGACGCAATTATATGATGATC 58.555 33.333 9.00 0.00 34.95 2.92
807 812 8.891671 AATTAGTAACGAACTTCAGTTGGTAA 57.108 30.769 7.66 0.26 44.30 2.85
819 824 2.824880 TTGGTAAGGTGCCGTGCCT 61.825 57.895 11.72 0.00 38.11 4.75
873 2162 2.781406 GGGTGTCCTCCTCCTCCT 59.219 66.667 0.00 0.00 0.00 3.69
874 2163 1.382009 GGGTGTCCTCCTCCTCCTC 60.382 68.421 0.00 0.00 0.00 3.71
876 2165 1.700985 GTGTCCTCCTCCTCCTCCT 59.299 63.158 0.00 0.00 0.00 3.69
879 2168 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
880 2169 2.328589 CCTCCTCCTCCTCCTCCCA 61.329 68.421 0.00 0.00 0.00 4.37
881 2170 1.075600 CTCCTCCTCCTCCTCCCAC 60.076 68.421 0.00 0.00 0.00 4.61
935 2243 1.795162 CGCTCGCCCAATTCATTCAAC 60.795 52.381 0.00 0.00 0.00 3.18
986 2294 0.693049 ACCCCAGAGCAATCGAAACT 59.307 50.000 0.00 0.00 0.00 2.66
987 2295 1.906574 ACCCCAGAGCAATCGAAACTA 59.093 47.619 0.00 0.00 0.00 2.24
988 2296 2.093447 ACCCCAGAGCAATCGAAACTAG 60.093 50.000 0.00 0.00 0.00 2.57
1190 2534 1.225426 GCCTGCCTGTGGATCATGA 59.775 57.895 0.00 0.00 0.00 3.07
1227 2571 3.134792 GAGCTCGAGTCGCAGGGA 61.135 66.667 15.13 0.00 0.00 4.20
1237 2581 2.892425 CGCAGGGACGAAGGATGC 60.892 66.667 0.00 0.00 34.06 3.91
1397 2744 0.651042 GTCGTCTCGTCGATACAGCG 60.651 60.000 10.85 5.05 41.78 5.18
1483 2830 4.742649 AGACCTCCTCGAGCGGCA 62.743 66.667 16.26 0.00 0.00 5.69
2090 3631 1.347320 GTTCACCGATCAACGACTCC 58.653 55.000 0.00 0.00 45.77 3.85
2130 3680 6.595716 GTGCTACCAGTTTGATCAGAAGTAAT 59.404 38.462 0.00 0.00 0.00 1.89
2158 3708 3.557577 TTGTGAATCGCATGTCCAAAG 57.442 42.857 0.00 0.00 0.00 2.77
2159 3709 2.503331 TGTGAATCGCATGTCCAAAGT 58.497 42.857 0.00 0.00 0.00 2.66
2160 3710 2.483877 TGTGAATCGCATGTCCAAAGTC 59.516 45.455 0.00 0.00 0.00 3.01
2161 3711 2.083774 TGAATCGCATGTCCAAAGTCC 58.916 47.619 0.00 0.00 0.00 3.85
2162 3712 2.083774 GAATCGCATGTCCAAAGTCCA 58.916 47.619 0.00 0.00 0.00 4.02
2163 3713 2.198827 ATCGCATGTCCAAAGTCCAA 57.801 45.000 0.00 0.00 0.00 3.53
2164 3714 1.974265 TCGCATGTCCAAAGTCCAAA 58.026 45.000 0.00 0.00 0.00 3.28
2167 3717 2.350772 CGCATGTCCAAAGTCCAAACTC 60.351 50.000 0.00 0.00 33.48 3.01
2177 3727 5.469084 CCAAAGTCCAAACTCCAGTTACTAC 59.531 44.000 0.00 0.00 37.25 2.73
2178 3728 6.289064 CAAAGTCCAAACTCCAGTTACTACT 58.711 40.000 0.00 0.00 37.25 2.57
2179 3729 7.439381 CAAAGTCCAAACTCCAGTTACTACTA 58.561 38.462 0.00 0.00 37.25 1.82
2497 4282 3.005050 TCTCTGCATTTTGTTTGGCTCTG 59.995 43.478 0.00 0.00 0.00 3.35
2516 4301 3.374330 GCACAGTGCGCTACTACG 58.626 61.111 10.47 6.25 37.60 3.51
2528 4313 2.031069 CGCTACTACGCCTACATGACAT 60.031 50.000 0.00 0.00 0.00 3.06
2541 4326 5.406477 CCTACATGACATGTGTATTGATCGG 59.594 44.000 27.66 11.46 44.60 4.18
2542 4327 4.129380 ACATGACATGTGTATTGATCGGG 58.871 43.478 20.21 0.00 43.01 5.14
2543 4328 3.192541 TGACATGTGTATTGATCGGGG 57.807 47.619 1.15 0.00 0.00 5.73
2544 4329 2.503765 TGACATGTGTATTGATCGGGGT 59.496 45.455 1.15 0.00 0.00 4.95
2545 4330 3.054728 TGACATGTGTATTGATCGGGGTT 60.055 43.478 1.15 0.00 0.00 4.11
2546 4331 3.945285 GACATGTGTATTGATCGGGGTTT 59.055 43.478 1.15 0.00 0.00 3.27
2547 4332 5.105567 ACATGTGTATTGATCGGGGTTTA 57.894 39.130 0.00 0.00 0.00 2.01
2548 4333 4.879545 ACATGTGTATTGATCGGGGTTTAC 59.120 41.667 0.00 0.00 0.00 2.01
2551 4336 5.562635 TGTGTATTGATCGGGGTTTACTTT 58.437 37.500 0.00 0.00 0.00 2.66
2553 4338 5.878669 GTGTATTGATCGGGGTTTACTTTCT 59.121 40.000 0.00 0.00 0.00 2.52
2617 4402 2.876581 TGACAAGCTGGAGTCAGAGTA 58.123 47.619 11.55 0.00 43.49 2.59
2687 4472 2.928731 GCTCAAGGACTTCGAGAAGGTG 60.929 54.545 16.16 8.98 42.53 4.00
2688 4473 2.558795 CTCAAGGACTTCGAGAAGGTGA 59.441 50.000 16.16 12.00 42.53 4.02
2690 4475 4.341487 TCAAGGACTTCGAGAAGGTGATA 58.659 43.478 16.16 0.00 42.53 2.15
2707 4492 2.632512 TGATATGTGAAGGCGCCATAGA 59.367 45.455 31.54 13.21 0.00 1.98
2708 4493 2.526304 TATGTGAAGGCGCCATAGAC 57.474 50.000 31.54 19.12 0.00 2.59
2775 4560 5.799213 ACCTTCTCGATGATTCTGAACTTT 58.201 37.500 0.00 0.00 0.00 2.66
2800 4589 2.701163 GATTACCGGCCCGCTCTGAG 62.701 65.000 0.00 0.00 0.00 3.35
2961 4750 1.444553 CGGAAGTCGCCAGTCTGTC 60.445 63.158 0.00 0.00 0.00 3.51
2970 4759 2.519622 CCAGTCTGTCCTGCCACCA 61.520 63.158 0.00 0.00 0.00 4.17
2971 4760 1.302033 CAGTCTGTCCTGCCACCAC 60.302 63.158 0.00 0.00 0.00 4.16
3182 4979 1.889105 ATCGCCGTGTCCATGCATC 60.889 57.895 0.00 0.00 0.00 3.91
3186 4983 1.597742 GCCGTGTCCATGCATCTATT 58.402 50.000 0.00 0.00 0.00 1.73
3187 4984 1.949525 GCCGTGTCCATGCATCTATTT 59.050 47.619 0.00 0.00 0.00 1.40
3196 4993 4.098349 TCCATGCATCTATTTGTTTGCTCC 59.902 41.667 0.00 0.00 36.10 4.70
3197 4994 4.365723 CATGCATCTATTTGTTTGCTCCC 58.634 43.478 0.00 0.00 36.10 4.30
3479 5328 5.470845 ACGCTGCTGTAAATAACATTCTC 57.529 39.130 0.00 0.00 37.50 2.87
3533 5382 8.436046 AAGGAGTACTACTACAGTATTTCTCG 57.564 38.462 8.40 0.00 41.77 4.04
3557 5406 2.325583 TAGGATGAAATGGCCGTCAC 57.674 50.000 0.00 0.00 0.00 3.67
3559 5408 1.004745 AGGATGAAATGGCCGTCACTT 59.995 47.619 0.00 0.00 0.00 3.16
3585 5434 3.181434 TGTTCTGCTGGTGGTTTAAGGAT 60.181 43.478 0.00 0.00 0.00 3.24
3604 5453 3.482786 GATTGCCGATGATATTTCACGC 58.517 45.455 0.00 0.00 33.85 5.34
3605 5454 1.946745 TGCCGATGATATTTCACGCA 58.053 45.000 1.82 1.82 33.85 5.24
3606 5455 1.866601 TGCCGATGATATTTCACGCAG 59.133 47.619 1.82 0.00 33.85 5.18
3607 5456 2.135139 GCCGATGATATTTCACGCAGA 58.865 47.619 0.00 0.00 33.85 4.26
3643 5492 6.875926 CTTCCTTAGCAAATTCCATTTTCG 57.124 37.500 0.00 0.00 0.00 3.46
3687 5536 5.187186 TCTGTCCAGAAATACAAGGGAGTAC 59.813 44.000 0.00 0.00 33.91 2.73
3725 5574 2.036346 ACAGGATTCACTTTTTGCTGGC 59.964 45.455 0.00 0.00 0.00 4.85
3743 5592 3.723772 CCCAAAAAGGCAAAAGGGG 57.276 52.632 0.00 0.00 35.39 4.79
3744 5593 0.537143 CCCAAAAAGGCAAAAGGGGC 60.537 55.000 0.00 0.00 35.39 5.80
3794 5643 1.315257 CCCGCCTGGAATGTTTGAGG 61.315 60.000 0.00 0.00 37.49 3.86
3935 5787 1.228552 TGCAACCAAAGGAGGAGCC 60.229 57.895 0.00 0.00 34.13 4.70
3942 5801 1.544917 AAAGGAGGAGCCCCACCAT 60.545 57.895 3.04 0.00 44.62 3.55
3944 5804 3.813724 GGAGGAGCCCCACCATGG 61.814 72.222 11.19 11.19 42.12 3.66
3997 5859 6.591750 TTAAGCCGTAAAAATCCATGGAAA 57.408 33.333 20.67 0.00 0.00 3.13
4034 5896 3.636231 CCTCGGGACCTGGCACAA 61.636 66.667 0.00 0.00 38.70 3.33
4042 5904 0.798776 GACCTGGCACAATGTCTTCG 59.201 55.000 0.00 0.00 38.70 3.79
4047 5909 3.002791 CTGGCACAATGTCTTCGTATGT 58.997 45.455 0.00 0.00 38.70 2.29
4053 5915 4.695455 CACAATGTCTTCGTATGTCCCTTT 59.305 41.667 0.00 0.00 0.00 3.11
4079 5941 2.017782 TGTGGTAAAAGTTTGAGCGCA 58.982 42.857 13.28 13.28 0.00 6.09
4118 5980 0.997196 GAGGCCGCTTGTAAACTACG 59.003 55.000 0.00 0.00 0.00 3.51
4186 6049 2.241160 TGTGAATGAAATGTGCTGCCT 58.759 42.857 0.00 0.00 0.00 4.75
4246 6111 1.336755 GGGACTTTTGCATGACACGTT 59.663 47.619 0.00 0.00 0.00 3.99
4295 6178 4.832608 CGACCGGCCTAACCCTGC 62.833 72.222 0.00 0.00 33.26 4.85
4354 6237 1.072965 GGATGGCCTCTGACCAATAGG 59.927 57.143 3.32 0.00 41.49 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.305471 CGCCTAGACTTAATAGCCAGACC 60.305 52.174 0.00 0.00 0.00 3.85
1 2 3.568853 TCGCCTAGACTTAATAGCCAGAC 59.431 47.826 0.00 0.00 0.00 3.51
2 3 3.821600 CTCGCCTAGACTTAATAGCCAGA 59.178 47.826 0.00 0.00 0.00 3.86
3 4 3.057174 CCTCGCCTAGACTTAATAGCCAG 60.057 52.174 0.00 0.00 0.00 4.85
4 5 2.891580 CCTCGCCTAGACTTAATAGCCA 59.108 50.000 0.00 0.00 0.00 4.75
5 6 2.892215 ACCTCGCCTAGACTTAATAGCC 59.108 50.000 0.00 0.00 0.00 3.93
6 7 3.568853 TCACCTCGCCTAGACTTAATAGC 59.431 47.826 0.00 0.00 0.00 2.97
7 8 4.216687 CCTCACCTCGCCTAGACTTAATAG 59.783 50.000 0.00 0.00 0.00 1.73
8 9 4.142790 CCTCACCTCGCCTAGACTTAATA 58.857 47.826 0.00 0.00 0.00 0.98
9 10 2.959707 CCTCACCTCGCCTAGACTTAAT 59.040 50.000 0.00 0.00 0.00 1.40
10 11 2.376109 CCTCACCTCGCCTAGACTTAA 58.624 52.381 0.00 0.00 0.00 1.85
11 12 1.409802 CCCTCACCTCGCCTAGACTTA 60.410 57.143 0.00 0.00 0.00 2.24
12 13 0.684805 CCCTCACCTCGCCTAGACTT 60.685 60.000 0.00 0.00 0.00 3.01
13 14 1.076632 CCCTCACCTCGCCTAGACT 60.077 63.158 0.00 0.00 0.00 3.24
14 15 0.971447 AACCCTCACCTCGCCTAGAC 60.971 60.000 0.00 0.00 0.00 2.59
15 16 0.252103 AAACCCTCACCTCGCCTAGA 60.252 55.000 0.00 0.00 0.00 2.43
16 17 0.175989 GAAACCCTCACCTCGCCTAG 59.824 60.000 0.00 0.00 0.00 3.02
17 18 0.252103 AGAAACCCTCACCTCGCCTA 60.252 55.000 0.00 0.00 0.00 3.93
18 19 1.536662 AGAAACCCTCACCTCGCCT 60.537 57.895 0.00 0.00 0.00 5.52
42 43 2.814336 AGATCTCATCATAGCGTACGCA 59.186 45.455 38.58 25.48 44.88 5.24
43 44 3.167425 CAGATCTCATCATAGCGTACGC 58.833 50.000 32.17 32.17 42.33 4.42
44 45 3.189495 ACCAGATCTCATCATAGCGTACG 59.811 47.826 11.84 11.84 0.00 3.67
51 52 3.092301 CCCGCTACCAGATCTCATCATA 58.908 50.000 0.00 0.00 0.00 2.15
64 65 1.480954 TGATCAGAAGAACCCGCTACC 59.519 52.381 0.00 0.00 0.00 3.18
70 71 4.884164 CCCTTGTATTGATCAGAAGAACCC 59.116 45.833 0.00 0.00 0.00 4.11
106 107 1.043022 AACACCTCGGAACCGTAGTT 58.957 50.000 12.93 10.24 40.74 2.24
110 111 0.037605 GATCAACACCTCGGAACCGT 60.038 55.000 12.93 0.00 40.74 4.83
118 119 1.134068 GCCCCTAAGGATCAACACCTC 60.134 57.143 0.00 0.00 38.24 3.85
119 120 0.919710 GCCCCTAAGGATCAACACCT 59.080 55.000 0.00 0.00 38.24 4.00
127 128 1.972660 GAGTGCGTGCCCCTAAGGAT 61.973 60.000 0.00 0.00 38.24 3.24
147 148 4.398988 GGTGTGATATTGTCAATGGCAGAA 59.601 41.667 8.39 0.00 38.90 3.02
148 149 3.947196 GGTGTGATATTGTCAATGGCAGA 59.053 43.478 8.39 2.34 38.90 4.26
149 150 3.695556 TGGTGTGATATTGTCAATGGCAG 59.304 43.478 8.39 0.00 38.90 4.85
150 151 3.694926 TGGTGTGATATTGTCAATGGCA 58.305 40.909 8.39 3.53 38.90 4.92
151 152 3.489738 GCTGGTGTGATATTGTCAATGGC 60.490 47.826 8.39 0.96 38.90 4.40
152 153 3.949754 AGCTGGTGTGATATTGTCAATGG 59.050 43.478 8.39 0.00 38.90 3.16
153 154 4.036027 GGAGCTGGTGTGATATTGTCAATG 59.964 45.833 8.39 0.00 38.90 2.82
154 155 4.202441 GGAGCTGGTGTGATATTGTCAAT 58.798 43.478 3.06 3.06 38.90 2.57
155 156 3.609853 GGAGCTGGTGTGATATTGTCAA 58.390 45.455 0.00 0.00 38.90 3.18
157 158 2.205074 CGGAGCTGGTGTGATATTGTC 58.795 52.381 0.00 0.00 0.00 3.18
158 159 1.134401 CCGGAGCTGGTGTGATATTGT 60.134 52.381 0.00 0.00 0.00 2.71
159 160 1.134401 ACCGGAGCTGGTGTGATATTG 60.134 52.381 9.46 0.00 41.85 1.90
160 161 1.204146 ACCGGAGCTGGTGTGATATT 58.796 50.000 9.46 0.00 41.85 1.28
161 162 2.082140 TACCGGAGCTGGTGTGATAT 57.918 50.000 9.46 0.00 43.68 1.63
162 163 2.082140 ATACCGGAGCTGGTGTGATA 57.918 50.000 9.46 0.00 43.68 2.15
163 164 1.134401 CAATACCGGAGCTGGTGTGAT 60.134 52.381 9.46 0.00 43.68 3.06
164 165 0.249120 CAATACCGGAGCTGGTGTGA 59.751 55.000 9.46 0.00 43.68 3.58
166 167 0.907704 TCCAATACCGGAGCTGGTGT 60.908 55.000 9.46 1.33 43.68 4.16
167 168 0.469917 ATCCAATACCGGAGCTGGTG 59.530 55.000 9.46 0.00 43.68 4.17
169 170 0.758734 TGATCCAATACCGGAGCTGG 59.241 55.000 9.46 11.45 42.18 4.85
170 171 2.213499 GTTGATCCAATACCGGAGCTG 58.787 52.381 9.46 0.79 42.18 4.24
171 172 1.202533 CGTTGATCCAATACCGGAGCT 60.203 52.381 9.46 0.00 42.18 4.09
173 174 2.882927 TCGTTGATCCAATACCGGAG 57.117 50.000 9.46 0.00 38.83 4.63
176 177 2.661675 CGCTATCGTTGATCCAATACCG 59.338 50.000 0.00 0.00 0.00 4.02
178 179 2.412089 GCCGCTATCGTTGATCCAATAC 59.588 50.000 0.00 0.00 0.00 1.89
179 180 2.683968 GCCGCTATCGTTGATCCAATA 58.316 47.619 0.00 0.00 0.00 1.90
180 181 1.512926 GCCGCTATCGTTGATCCAAT 58.487 50.000 0.00 0.00 0.00 3.16
181 182 0.874175 CGCCGCTATCGTTGATCCAA 60.874 55.000 0.00 0.00 0.00 3.53
182 183 1.299850 CGCCGCTATCGTTGATCCA 60.300 57.895 0.00 0.00 0.00 3.41
183 184 1.299926 ACGCCGCTATCGTTGATCC 60.300 57.895 0.00 0.00 36.72 3.36
184 185 0.870307 ACACGCCGCTATCGTTGATC 60.870 55.000 0.00 0.00 38.19 2.92
185 186 1.141019 ACACGCCGCTATCGTTGAT 59.859 52.632 0.00 0.00 38.19 2.57
186 187 1.803922 CACACGCCGCTATCGTTGA 60.804 57.895 0.00 0.00 38.19 3.18
187 188 2.695055 CACACGCCGCTATCGTTG 59.305 61.111 0.00 0.00 38.19 4.10
188 189 2.508439 CCACACGCCGCTATCGTT 60.508 61.111 0.00 0.00 38.19 3.85
190 191 3.478724 TAGCCACACGCCGCTATCG 62.479 63.158 0.00 0.00 38.78 2.92
191 192 1.949631 GTAGCCACACGCCGCTATC 60.950 63.158 0.00 0.00 39.64 2.08
192 193 2.106332 GTAGCCACACGCCGCTAT 59.894 61.111 0.00 0.00 39.64 2.97
193 194 4.485834 CGTAGCCACACGCCGCTA 62.486 66.667 0.00 0.00 38.78 4.26
199 200 3.909258 AACGAGCCGTAGCCACACG 62.909 63.158 0.62 0.00 39.99 4.49
200 201 2.048503 AACGAGCCGTAGCCACAC 60.049 61.111 0.62 0.00 39.99 3.82
201 202 2.260434 GAACGAGCCGTAGCCACA 59.740 61.111 0.62 0.00 39.99 4.17
202 203 1.805945 CAGAACGAGCCGTAGCCAC 60.806 63.158 0.62 0.00 39.99 5.01
203 204 1.974875 TCAGAACGAGCCGTAGCCA 60.975 57.895 0.62 0.00 39.99 4.75
204 205 1.516603 GTCAGAACGAGCCGTAGCC 60.517 63.158 0.62 0.00 39.99 3.93
205 206 4.074454 GTCAGAACGAGCCGTAGC 57.926 61.111 0.62 0.00 39.99 3.58
215 216 0.951558 ACCATTGTTGCCGTCAGAAC 59.048 50.000 0.00 0.00 0.00 3.01
216 217 1.234821 GACCATTGTTGCCGTCAGAA 58.765 50.000 0.00 0.00 0.00 3.02
217 218 0.948623 CGACCATTGTTGCCGTCAGA 60.949 55.000 0.00 0.00 0.00 3.27
218 219 1.227999 ACGACCATTGTTGCCGTCAG 61.228 55.000 0.00 0.00 0.00 3.51
219 220 0.816018 AACGACCATTGTTGCCGTCA 60.816 50.000 0.00 0.00 32.17 4.35
220 221 1.127951 CTAACGACCATTGTTGCCGTC 59.872 52.381 0.00 0.00 32.17 4.79
221 222 1.153353 CTAACGACCATTGTTGCCGT 58.847 50.000 0.00 0.00 33.88 5.68
222 223 0.446222 CCTAACGACCATTGTTGCCG 59.554 55.000 0.00 0.00 0.00 5.69
223 224 1.199097 CACCTAACGACCATTGTTGCC 59.801 52.381 0.00 0.00 0.00 4.52
224 225 1.199097 CCACCTAACGACCATTGTTGC 59.801 52.381 0.00 0.00 0.00 4.17
225 226 1.199097 GCCACCTAACGACCATTGTTG 59.801 52.381 0.00 0.00 0.00 3.33
226 227 1.073284 AGCCACCTAACGACCATTGTT 59.927 47.619 0.00 0.00 0.00 2.83
227 228 0.690762 AGCCACCTAACGACCATTGT 59.309 50.000 0.00 0.00 0.00 2.71
228 229 1.821216 AAGCCACCTAACGACCATTG 58.179 50.000 0.00 0.00 0.00 2.82
229 230 2.093128 CCTAAGCCACCTAACGACCATT 60.093 50.000 0.00 0.00 0.00 3.16
230 231 1.485066 CCTAAGCCACCTAACGACCAT 59.515 52.381 0.00 0.00 0.00 3.55
231 232 0.899720 CCTAAGCCACCTAACGACCA 59.100 55.000 0.00 0.00 0.00 4.02
232 233 0.177373 CCCTAAGCCACCTAACGACC 59.823 60.000 0.00 0.00 0.00 4.79
233 234 1.134877 GTCCCTAAGCCACCTAACGAC 60.135 57.143 0.00 0.00 0.00 4.34
234 235 1.188863 GTCCCTAAGCCACCTAACGA 58.811 55.000 0.00 0.00 0.00 3.85
235 236 0.177373 GGTCCCTAAGCCACCTAACG 59.823 60.000 0.00 0.00 0.00 3.18
236 237 1.485480 GAGGTCCCTAAGCCACCTAAC 59.515 57.143 0.00 0.00 40.85 2.34
237 238 1.875488 GAGGTCCCTAAGCCACCTAA 58.125 55.000 0.00 0.00 40.85 2.69
238 239 0.396695 CGAGGTCCCTAAGCCACCTA 60.397 60.000 0.00 0.00 40.85 3.08
239 240 1.686110 CGAGGTCCCTAAGCCACCT 60.686 63.158 0.00 0.00 43.63 4.00
240 241 1.049289 ATCGAGGTCCCTAAGCCACC 61.049 60.000 0.00 0.00 0.00 4.61
241 242 0.831307 AATCGAGGTCCCTAAGCCAC 59.169 55.000 0.00 0.00 0.00 5.01
242 243 1.580059 AAATCGAGGTCCCTAAGCCA 58.420 50.000 0.00 0.00 0.00 4.75
243 244 2.711978 AAAATCGAGGTCCCTAAGCC 57.288 50.000 0.00 0.00 0.00 4.35
244 245 6.935208 ACATAATAAAATCGAGGTCCCTAAGC 59.065 38.462 0.00 0.00 0.00 3.09
245 246 8.904099 AACATAATAAAATCGAGGTCCCTAAG 57.096 34.615 0.00 0.00 0.00 2.18
246 247 9.333724 GAAACATAATAAAATCGAGGTCCCTAA 57.666 33.333 0.00 0.00 0.00 2.69
247 248 7.654520 CGAAACATAATAAAATCGAGGTCCCTA 59.345 37.037 0.00 0.00 32.38 3.53
248 249 6.482308 CGAAACATAATAAAATCGAGGTCCCT 59.518 38.462 0.00 0.00 32.38 4.20
249 250 6.480981 TCGAAACATAATAAAATCGAGGTCCC 59.519 38.462 0.00 0.00 34.74 4.46
250 251 7.224167 AGTCGAAACATAATAAAATCGAGGTCC 59.776 37.037 0.00 0.00 39.63 4.46
251 252 8.056571 CAGTCGAAACATAATAAAATCGAGGTC 58.943 37.037 0.00 0.00 39.63 3.85
252 253 7.465513 GCAGTCGAAACATAATAAAATCGAGGT 60.466 37.037 0.00 0.00 39.63 3.85
253 254 6.846283 GCAGTCGAAACATAATAAAATCGAGG 59.154 38.462 0.00 0.00 39.63 4.63
254 255 7.621991 AGCAGTCGAAACATAATAAAATCGAG 58.378 34.615 0.00 0.00 39.63 4.04
255 256 7.534085 AGCAGTCGAAACATAATAAAATCGA 57.466 32.000 0.00 0.00 37.02 3.59
256 257 8.515473 CAAAGCAGTCGAAACATAATAAAATCG 58.485 33.333 0.00 0.00 0.00 3.34
257 258 9.341899 ACAAAGCAGTCGAAACATAATAAAATC 57.658 29.630 0.00 0.00 0.00 2.17
259 260 9.601971 GTACAAAGCAGTCGAAACATAATAAAA 57.398 29.630 0.00 0.00 0.00 1.52
260 261 8.995220 AGTACAAAGCAGTCGAAACATAATAAA 58.005 29.630 0.00 0.00 0.00 1.40
261 262 8.542497 AGTACAAAGCAGTCGAAACATAATAA 57.458 30.769 0.00 0.00 0.00 1.40
262 263 8.542497 AAGTACAAAGCAGTCGAAACATAATA 57.458 30.769 0.00 0.00 0.00 0.98
263 264 7.360946 GGAAGTACAAAGCAGTCGAAACATAAT 60.361 37.037 0.00 0.00 0.00 1.28
264 265 6.073440 GGAAGTACAAAGCAGTCGAAACATAA 60.073 38.462 0.00 0.00 0.00 1.90
265 266 5.407387 GGAAGTACAAAGCAGTCGAAACATA 59.593 40.000 0.00 0.00 0.00 2.29
266 267 4.213482 GGAAGTACAAAGCAGTCGAAACAT 59.787 41.667 0.00 0.00 0.00 2.71
267 268 3.558418 GGAAGTACAAAGCAGTCGAAACA 59.442 43.478 0.00 0.00 0.00 2.83
268 269 3.558418 TGGAAGTACAAAGCAGTCGAAAC 59.442 43.478 0.00 0.00 0.00 2.78
269 270 3.799366 TGGAAGTACAAAGCAGTCGAAA 58.201 40.909 0.00 0.00 0.00 3.46
270 271 3.462483 TGGAAGTACAAAGCAGTCGAA 57.538 42.857 0.00 0.00 0.00 3.71
271 272 3.462483 TTGGAAGTACAAAGCAGTCGA 57.538 42.857 0.00 0.00 0.00 4.20
272 273 3.745975 TCATTGGAAGTACAAAGCAGTCG 59.254 43.478 0.00 0.00 33.48 4.18
273 274 5.239525 AGTTCATTGGAAGTACAAAGCAGTC 59.760 40.000 0.00 0.00 34.92 3.51
274 275 5.133221 AGTTCATTGGAAGTACAAAGCAGT 58.867 37.500 0.00 0.00 34.92 4.40
275 276 5.695851 AGTTCATTGGAAGTACAAAGCAG 57.304 39.130 0.00 0.00 34.92 4.24
276 277 6.463995 AAAGTTCATTGGAAGTACAAAGCA 57.536 33.333 0.00 0.00 35.63 3.91
281 282 9.444600 GGAGTATAAAAGTTCATTGGAAGTACA 57.555 33.333 0.00 0.00 35.63 2.90
282 283 8.890718 GGGAGTATAAAAGTTCATTGGAAGTAC 58.109 37.037 0.00 0.00 35.63 2.73
283 284 8.832735 AGGGAGTATAAAAGTTCATTGGAAGTA 58.167 33.333 0.00 0.00 35.63 2.24
284 285 7.699878 AGGGAGTATAAAAGTTCATTGGAAGT 58.300 34.615 0.00 0.00 38.32 3.01
285 286 7.283354 GGAGGGAGTATAAAAGTTCATTGGAAG 59.717 40.741 0.00 0.00 32.62 3.46
286 287 7.116736 GGAGGGAGTATAAAAGTTCATTGGAA 58.883 38.462 0.00 0.00 0.00 3.53
287 288 6.631766 CGGAGGGAGTATAAAAGTTCATTGGA 60.632 42.308 0.00 0.00 0.00 3.53
288 289 5.527582 CGGAGGGAGTATAAAAGTTCATTGG 59.472 44.000 0.00 0.00 0.00 3.16
289 290 6.346096 TCGGAGGGAGTATAAAAGTTCATTG 58.654 40.000 0.00 0.00 0.00 2.82
290 291 6.555463 TCGGAGGGAGTATAAAAGTTCATT 57.445 37.500 0.00 0.00 0.00 2.57
291 292 6.749036 ATCGGAGGGAGTATAAAAGTTCAT 57.251 37.500 0.00 0.00 0.00 2.57
292 293 6.555463 AATCGGAGGGAGTATAAAAGTTCA 57.445 37.500 0.00 0.00 0.00 3.18
293 294 7.860918 AAAATCGGAGGGAGTATAAAAGTTC 57.139 36.000 0.00 0.00 0.00 3.01
294 295 8.546322 AGTAAAATCGGAGGGAGTATAAAAGTT 58.454 33.333 0.00 0.00 0.00 2.66
295 296 8.087303 AGTAAAATCGGAGGGAGTATAAAAGT 57.913 34.615 0.00 0.00 0.00 2.66
296 297 8.959705 AAGTAAAATCGGAGGGAGTATAAAAG 57.040 34.615 0.00 0.00 0.00 2.27
297 298 9.822185 GTAAGTAAAATCGGAGGGAGTATAAAA 57.178 33.333 0.00 0.00 0.00 1.52
298 299 9.205513 AGTAAGTAAAATCGGAGGGAGTATAAA 57.794 33.333 0.00 0.00 0.00 1.40
299 300 8.773033 AGTAAGTAAAATCGGAGGGAGTATAA 57.227 34.615 0.00 0.00 0.00 0.98
300 301 7.449704 GGAGTAAGTAAAATCGGAGGGAGTATA 59.550 40.741 0.00 0.00 0.00 1.47
301 302 6.267242 GGAGTAAGTAAAATCGGAGGGAGTAT 59.733 42.308 0.00 0.00 0.00 2.12
302 303 5.595952 GGAGTAAGTAAAATCGGAGGGAGTA 59.404 44.000 0.00 0.00 0.00 2.59
303 304 4.405036 GGAGTAAGTAAAATCGGAGGGAGT 59.595 45.833 0.00 0.00 0.00 3.85
304 305 4.650131 AGGAGTAAGTAAAATCGGAGGGAG 59.350 45.833 0.00 0.00 0.00 4.30
305 306 4.617593 AGGAGTAAGTAAAATCGGAGGGA 58.382 43.478 0.00 0.00 0.00 4.20
306 307 4.404715 TGAGGAGTAAGTAAAATCGGAGGG 59.595 45.833 0.00 0.00 0.00 4.30
307 308 5.593679 TGAGGAGTAAGTAAAATCGGAGG 57.406 43.478 0.00 0.00 0.00 4.30
310 311 9.141400 GCTAATATGAGGAGTAAGTAAAATCGG 57.859 37.037 0.00 0.00 0.00 4.18
311 312 9.915629 AGCTAATATGAGGAGTAAGTAAAATCG 57.084 33.333 0.00 0.00 0.00 3.34
315 316 9.832445 CCAAAGCTAATATGAGGAGTAAGTAAA 57.168 33.333 0.00 0.00 0.00 2.01
316 317 8.989131 ACCAAAGCTAATATGAGGAGTAAGTAA 58.011 33.333 0.00 0.00 0.00 2.24
317 318 8.548880 ACCAAAGCTAATATGAGGAGTAAGTA 57.451 34.615 0.00 0.00 0.00 2.24
318 319 7.125811 TGACCAAAGCTAATATGAGGAGTAAGT 59.874 37.037 0.00 0.00 0.00 2.24
319 320 7.500992 TGACCAAAGCTAATATGAGGAGTAAG 58.499 38.462 0.00 0.00 0.00 2.34
320 321 7.432148 TGACCAAAGCTAATATGAGGAGTAA 57.568 36.000 0.00 0.00 0.00 2.24
321 322 7.432148 TTGACCAAAGCTAATATGAGGAGTA 57.568 36.000 0.00 0.00 0.00 2.59
322 323 5.957771 TGACCAAAGCTAATATGAGGAGT 57.042 39.130 0.00 0.00 0.00 3.85
323 324 7.256756 CTTTGACCAAAGCTAATATGAGGAG 57.743 40.000 9.25 0.00 40.94 3.69
330 331 8.691797 AAAGTTTGACTTTGACCAAAGCTAATA 58.308 29.630 19.14 2.77 45.83 0.98
331 332 7.555965 AAAGTTTGACTTTGACCAAAGCTAAT 58.444 30.769 19.14 3.33 45.83 1.73
332 333 6.930731 AAAGTTTGACTTTGACCAAAGCTAA 58.069 32.000 19.14 12.80 45.83 3.09
333 334 6.524101 AAAGTTTGACTTTGACCAAAGCTA 57.476 33.333 19.14 8.31 45.83 3.32
334 335 5.405935 AAAGTTTGACTTTGACCAAAGCT 57.594 34.783 19.14 9.07 45.83 3.74
345 346 9.974980 TTTGTGAAAGTTTAGAAAGTTTGACTT 57.025 25.926 19.06 0.00 42.26 3.01
346 347 9.626045 CTTTGTGAAAGTTTAGAAAGTTTGACT 57.374 29.630 19.06 0.00 42.26 3.41
489 490 9.161629 CAAACTTCCTAAAATTTGACCAAGTTT 57.838 29.630 17.39 17.39 41.32 2.66
490 491 8.536175 TCAAACTTCCTAAAATTTGACCAAGTT 58.464 29.630 10.56 10.56 36.42 2.66
491 492 8.073467 TCAAACTTCCTAAAATTTGACCAAGT 57.927 30.769 0.00 0.00 36.42 3.16
515 516 6.701841 TCCGCATATTAGAATTGACTGAAGTC 59.298 38.462 3.41 3.41 44.97 3.01
516 517 6.582636 TCCGCATATTAGAATTGACTGAAGT 58.417 36.000 0.00 0.00 0.00 3.01
517 518 6.703607 ACTCCGCATATTAGAATTGACTGAAG 59.296 38.462 0.00 0.00 0.00 3.02
518 519 6.582636 ACTCCGCATATTAGAATTGACTGAA 58.417 36.000 0.00 0.00 0.00 3.02
519 520 6.161855 ACTCCGCATATTAGAATTGACTGA 57.838 37.500 0.00 0.00 0.00 3.41
520 521 7.946655 TTACTCCGCATATTAGAATTGACTG 57.053 36.000 0.00 0.00 0.00 3.51
528 529 9.531942 TCGTTTTTATTTACTCCGCATATTAGA 57.468 29.630 0.00 0.00 0.00 2.10
531 532 8.126700 CCTTCGTTTTTATTTACTCCGCATATT 58.873 33.333 0.00 0.00 0.00 1.28
532 533 7.255001 CCCTTCGTTTTTATTTACTCCGCATAT 60.255 37.037 0.00 0.00 0.00 1.78
533 534 6.037391 CCCTTCGTTTTTATTTACTCCGCATA 59.963 38.462 0.00 0.00 0.00 3.14
534 535 5.163693 CCCTTCGTTTTTATTTACTCCGCAT 60.164 40.000 0.00 0.00 0.00 4.73
535 536 4.154556 CCCTTCGTTTTTATTTACTCCGCA 59.845 41.667 0.00 0.00 0.00 5.69
536 537 4.392754 TCCCTTCGTTTTTATTTACTCCGC 59.607 41.667 0.00 0.00 0.00 5.54
537 538 5.640783 ACTCCCTTCGTTTTTATTTACTCCG 59.359 40.000 0.00 0.00 0.00 4.63
538 539 8.728337 ATACTCCCTTCGTTTTTATTTACTCC 57.272 34.615 0.00 0.00 0.00 3.85
549 550 9.984190 GATCTAAATCTAATACTCCCTTCGTTT 57.016 33.333 0.00 0.00 0.00 3.60
550 551 9.369672 AGATCTAAATCTAATACTCCCTTCGTT 57.630 33.333 0.00 0.00 40.57 3.85
551 552 8.943594 AGATCTAAATCTAATACTCCCTTCGT 57.056 34.615 0.00 0.00 40.57 3.85
630 631 1.278127 ACATTTGGGGTACTCACCGAG 59.722 52.381 0.00 0.00 46.86 4.63
676 681 2.159028 TCATTGACAGACACGTTCACCA 60.159 45.455 0.00 0.00 0.00 4.17
699 704 9.175312 ACCAAGATCTGATCATCATATAATTGC 57.825 33.333 19.12 0.00 0.00 3.56
712 717 9.801873 GCTCTATAAGATTACCAAGATCTGATC 57.198 37.037 9.65 9.65 34.24 2.92
713 718 8.465999 CGCTCTATAAGATTACCAAGATCTGAT 58.534 37.037 0.00 0.00 34.24 2.90
714 719 7.665974 TCGCTCTATAAGATTACCAAGATCTGA 59.334 37.037 0.00 0.00 34.24 3.27
715 720 7.821652 TCGCTCTATAAGATTACCAAGATCTG 58.178 38.462 0.00 0.00 34.24 2.90
780 785 8.891671 ACCAACTGAAGTTCGTTACTAATTAA 57.108 30.769 11.10 0.00 35.54 1.40
781 786 9.979578 TTACCAACTGAAGTTCGTTACTAATTA 57.020 29.630 11.10 0.00 35.54 1.40
782 787 8.891671 TTACCAACTGAAGTTCGTTACTAATT 57.108 30.769 11.10 0.00 35.54 1.40
787 792 5.050567 CACCTTACCAACTGAAGTTCGTTAC 60.051 44.000 11.10 0.00 35.83 2.50
807 812 3.706373 CCAGTAGGCACGGCACCT 61.706 66.667 0.00 0.00 41.57 4.00
948 2256 2.159379 GGTTTCGGCTTGCTAGGATTTG 60.159 50.000 0.00 0.00 0.00 2.32
955 2263 1.002624 CTGGGGTTTCGGCTTGCTA 60.003 57.895 0.00 0.00 0.00 3.49
986 2294 3.572682 CGGATCCATGGCTTGTACTACTA 59.427 47.826 13.41 0.00 0.00 1.82
987 2295 2.365617 CGGATCCATGGCTTGTACTACT 59.634 50.000 13.41 0.00 0.00 2.57
988 2296 2.364324 TCGGATCCATGGCTTGTACTAC 59.636 50.000 13.41 0.00 0.00 2.73
1163 2492 4.154347 CAGGCAGGCTCGTCTCCC 62.154 72.222 0.00 0.00 0.00 4.30
1164 2493 3.386237 ACAGGCAGGCTCGTCTCC 61.386 66.667 0.00 0.00 0.00 3.71
1165 2494 2.125753 CACAGGCAGGCTCGTCTC 60.126 66.667 0.00 0.00 0.00 3.36
1166 2495 3.699894 CCACAGGCAGGCTCGTCT 61.700 66.667 0.00 0.00 0.00 4.18
1167 2496 2.914777 GATCCACAGGCAGGCTCGTC 62.915 65.000 0.00 0.00 0.00 4.20
1168 2497 3.005539 ATCCACAGGCAGGCTCGT 61.006 61.111 0.00 0.00 0.00 4.18
1169 2498 2.202987 GATCCACAGGCAGGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
1170 2499 0.818445 CATGATCCACAGGCAGGCTC 60.818 60.000 0.00 0.00 0.00 4.70
1171 2500 1.226542 CATGATCCACAGGCAGGCT 59.773 57.895 0.00 0.00 0.00 4.58
1172 2501 0.818445 CTCATGATCCACAGGCAGGC 60.818 60.000 0.00 0.00 0.00 4.85
1173 2502 0.179026 CCTCATGATCCACAGGCAGG 60.179 60.000 0.00 0.00 0.00 4.85
1174 2503 0.818445 GCCTCATGATCCACAGGCAG 60.818 60.000 17.10 0.00 37.33 4.85
1175 2504 1.225426 GCCTCATGATCCACAGGCA 59.775 57.895 17.10 0.00 37.33 4.75
1176 2505 1.890979 CGCCTCATGATCCACAGGC 60.891 63.158 13.52 13.52 35.06 4.85
1227 2571 3.077556 AGCTCCCGCATCCTTCGT 61.078 61.111 0.00 0.00 39.10 3.85
1237 2581 0.970937 TCCCTCAAGTACAGCTCCCG 60.971 60.000 0.00 0.00 0.00 5.14
1397 2744 4.554036 GGATCGGTCCCTGCTGCC 62.554 72.222 2.19 0.00 38.69 4.85
1483 2830 4.643387 GGTGCCAACTGGAGCGGT 62.643 66.667 0.00 0.00 37.39 5.68
1671 3093 2.662196 TGCGGCGCGTAGAACAAA 60.662 55.556 28.09 2.47 0.00 2.83
1672 3094 3.109547 CTGCGGCGCGTAGAACAA 61.110 61.111 28.09 5.67 41.80 2.83
1758 3270 1.002087 GAGTCTTGGTGAATCGGTGGT 59.998 52.381 0.00 0.00 29.89 4.16
1885 3406 0.617820 ACCCTGTGGCGTATCTCCTT 60.618 55.000 0.00 0.00 33.59 3.36
2090 3631 2.706339 AGCACTGAAATAGCAGGGAG 57.294 50.000 0.00 0.00 41.90 4.30
2130 3680 5.384063 ACATGCGATTCACAATGGTAAAA 57.616 34.783 0.00 0.00 0.00 1.52
2144 3694 2.198827 TTGGACTTTGGACATGCGAT 57.801 45.000 0.00 0.00 0.00 4.58
2158 3708 6.587206 ACTAGTAGTAACTGGAGTTTGGAC 57.413 41.667 0.00 0.00 37.62 4.02
2159 3709 8.111545 TCATACTAGTAGTAACTGGAGTTTGGA 58.888 37.037 13.92 0.00 37.62 3.53
2160 3710 8.289939 TCATACTAGTAGTAACTGGAGTTTGG 57.710 38.462 13.92 0.00 37.62 3.28
2161 3711 8.958506 ACTCATACTAGTAGTAACTGGAGTTTG 58.041 37.037 20.33 11.01 37.62 2.93
2164 3714 9.781633 CATACTCATACTAGTAGTAACTGGAGT 57.218 37.037 24.74 24.74 37.62 3.85
2167 3717 8.921353 ACCATACTCATACTAGTAGTAACTGG 57.079 38.462 13.92 16.04 39.94 4.00
2177 3727 9.781633 ACAACTCTAGTACCATACTCATACTAG 57.218 37.037 10.19 10.19 45.15 2.57
2178 3728 9.557061 CACAACTCTAGTACCATACTCATACTA 57.443 37.037 0.00 0.00 40.14 1.82
2179 3729 8.053963 ACACAACTCTAGTACCATACTCATACT 58.946 37.037 0.00 0.00 40.14 2.12
2306 4056 3.691342 CGCTCGGACAGGTCCCAA 61.691 66.667 12.66 0.93 46.96 4.12
2373 4123 0.798776 CAGTGGGCAATCAGTTCGTC 59.201 55.000 0.00 0.00 0.00 4.20
2497 4282 1.674611 CGTAGTAGCGCACTGTGCAC 61.675 60.000 29.86 21.83 45.36 4.57
2508 4293 3.243434 ACATGTCATGTAGGCGTAGTAGC 60.243 47.826 16.99 0.00 42.78 3.58
2516 4301 5.107337 CGATCAATACACATGTCATGTAGGC 60.107 44.000 18.00 2.38 42.70 3.93
2517 4302 5.406477 CCGATCAATACACATGTCATGTAGG 59.594 44.000 18.00 9.63 42.70 3.18
2528 4313 4.829872 AGTAAACCCCGATCAATACACA 57.170 40.909 0.00 0.00 0.00 3.72
2541 4326 6.046593 CCTGAAACCAAAAGAAAGTAAACCC 58.953 40.000 0.00 0.00 0.00 4.11
2542 4327 5.522460 GCCTGAAACCAAAAGAAAGTAAACC 59.478 40.000 0.00 0.00 0.00 3.27
2543 4328 6.338146 AGCCTGAAACCAAAAGAAAGTAAAC 58.662 36.000 0.00 0.00 0.00 2.01
2544 4329 6.379988 AGAGCCTGAAACCAAAAGAAAGTAAA 59.620 34.615 0.00 0.00 0.00 2.01
2545 4330 5.891551 AGAGCCTGAAACCAAAAGAAAGTAA 59.108 36.000 0.00 0.00 0.00 2.24
2546 4331 5.299279 CAGAGCCTGAAACCAAAAGAAAGTA 59.701 40.000 0.00 0.00 32.44 2.24
2547 4332 4.098501 CAGAGCCTGAAACCAAAAGAAAGT 59.901 41.667 0.00 0.00 32.44 2.66
2548 4333 4.339247 TCAGAGCCTGAAACCAAAAGAAAG 59.661 41.667 2.78 0.00 37.57 2.62
2551 4336 3.576078 TCAGAGCCTGAAACCAAAAGA 57.424 42.857 2.78 0.00 37.57 2.52
2553 4338 3.157087 GGATCAGAGCCTGAAACCAAAA 58.843 45.455 17.80 0.00 44.04 2.44
2687 4472 2.996621 GTCTATGGCGCCTTCACATATC 59.003 50.000 29.70 8.77 0.00 1.63
2688 4473 2.368548 TGTCTATGGCGCCTTCACATAT 59.631 45.455 29.70 13.38 0.00 1.78
2690 4475 0.541392 TGTCTATGGCGCCTTCACAT 59.459 50.000 29.70 14.99 0.00 3.21
2716 4501 4.229582 TGAGAATTAACCTGTATTGGCCCT 59.770 41.667 0.00 0.00 0.00 5.19
2775 4560 2.495866 GGGCCGGTAATCGAACGA 59.504 61.111 1.90 0.00 42.43 3.85
2800 4589 3.124976 GCATTCAGTTCAGACTTCAGAGC 59.875 47.826 0.00 0.00 32.54 4.09
2899 4688 1.481871 ACTGTACACCTATGTCCCCG 58.518 55.000 0.00 0.00 40.48 5.73
2961 4750 4.778143 GCCCGTAGTGGTGGCAGG 62.778 72.222 0.00 0.00 44.70 4.85
3182 4979 1.478105 GGCCAGGGAGCAAACAAATAG 59.522 52.381 0.00 0.00 0.00 1.73
3186 4983 2.597217 CGGCCAGGGAGCAAACAA 60.597 61.111 2.24 0.00 0.00 2.83
3187 4984 4.659172 CCGGCCAGGGAGCAAACA 62.659 66.667 2.24 0.00 35.97 2.83
3316 5115 3.721706 CTCCAGGTCAGGCCCCAC 61.722 72.222 0.00 0.00 38.26 4.61
3479 5328 8.408601 CAAATTTATAAGACCATCAGGACCTTG 58.591 37.037 0.00 0.00 38.69 3.61
3533 5382 4.338118 TGACGGCCATTTCATCCTAATTTC 59.662 41.667 2.24 0.00 0.00 2.17
3559 5408 3.971245 AAACCACCAGCAGAACAAAAA 57.029 38.095 0.00 0.00 0.00 1.94
3576 5425 7.591426 GTGAAATATCATCGGCAATCCTTAAAC 59.409 37.037 0.00 0.00 38.01 2.01
3585 5434 2.284190 TGCGTGAAATATCATCGGCAA 58.716 42.857 0.00 0.00 38.01 4.52
3604 5453 3.749226 AGGAAGCTGAAACCTTCTTCTG 58.251 45.455 0.00 0.00 38.91 3.02
3605 5454 4.445557 AAGGAAGCTGAAACCTTCTTCT 57.554 40.909 8.35 0.00 39.44 2.85
3606 5455 5.871465 CTAAGGAAGCTGAAACCTTCTTC 57.129 43.478 14.87 0.00 42.13 2.87
3635 5484 6.750148 AGTATAAGCTAGGTCTCGAAAATGG 58.250 40.000 0.00 0.00 0.00 3.16
3643 5492 6.531021 ACAGAGAGAGTATAAGCTAGGTCTC 58.469 44.000 0.00 0.00 0.00 3.36
3692 5541 7.417496 AAGTGAATCCTGTTAAGACGTTTAC 57.583 36.000 0.00 0.00 0.00 2.01
3725 5574 0.537143 GCCCCTTTTGCCTTTTTGGG 60.537 55.000 0.00 0.00 36.00 4.12
3733 5582 3.615709 ACTTGCGCCCCTTTTGCC 61.616 61.111 4.18 0.00 0.00 4.52
3743 5592 0.099436 CTCAAATAGCCCACTTGCGC 59.901 55.000 0.00 0.00 36.02 6.09
3744 5593 0.734889 CCTCAAATAGCCCACTTGCG 59.265 55.000 0.00 0.00 36.02 4.85
3757 5606 0.320050 GGCCCGAAAAATGCCTCAAA 59.680 50.000 0.00 0.00 42.01 2.69
3758 5607 1.540435 GGGCCCGAAAAATGCCTCAA 61.540 55.000 5.69 0.00 44.71 3.02
3759 5608 1.981853 GGGCCCGAAAAATGCCTCA 60.982 57.895 5.69 0.00 44.71 3.86
3760 5609 2.892640 GGGCCCGAAAAATGCCTC 59.107 61.111 5.69 0.00 44.71 4.70
3787 5636 2.798976 TGAATGCAGTTGCCTCAAAC 57.201 45.000 1.06 0.00 41.18 2.93
3794 5643 2.549633 AACGCTATGAATGCAGTTGC 57.450 45.000 0.00 0.00 42.50 4.17
3804 5656 2.984562 TCCTGCATTGAAACGCTATGA 58.015 42.857 0.00 0.00 32.40 2.15
3806 5658 4.989279 ATTTCCTGCATTGAAACGCTAT 57.011 36.364 12.24 0.00 34.77 2.97
3810 5662 3.710437 GCAATTTCCTGCATTGAAACG 57.290 42.857 12.24 8.79 42.17 3.60
3835 5687 0.973632 TTCAGGTGGCTGTCGTACAT 59.026 50.000 0.00 0.00 0.00 2.29
3838 5690 1.621317 TCATTTCAGGTGGCTGTCGTA 59.379 47.619 0.00 0.00 0.00 3.43
3898 5750 1.954382 CACTAGGCCTACGCATACTGA 59.046 52.381 8.91 0.00 36.38 3.41
3942 5801 1.440060 CGAGTACATTAGCCCGCCA 59.560 57.895 0.00 0.00 0.00 5.69
3944 5804 1.954651 GCCGAGTACATTAGCCCGC 60.955 63.158 0.00 0.00 0.00 6.13
3945 5805 1.660575 CGCCGAGTACATTAGCCCG 60.661 63.158 0.00 0.00 0.00 6.13
3950 5810 0.878523 GCATGCCGCCGAGTACATTA 60.879 55.000 6.36 0.00 32.94 1.90
3975 5836 6.591750 TTTTCCATGGATTTTTACGGCTTA 57.408 33.333 17.06 0.00 0.00 3.09
3997 5859 4.978099 AGGATTTCCAGCATCGTATGATT 58.022 39.130 0.00 0.00 38.89 2.57
4034 5896 5.671493 CCTAAAAGGGACATACGAAGACAT 58.329 41.667 0.00 0.00 0.00 3.06
4053 5915 4.581409 GCTCAAACTTTTACCACACCCTAA 59.419 41.667 0.00 0.00 0.00 2.69
4079 5941 1.021390 CGGTCAGGCTTCTGCGAAAT 61.021 55.000 0.00 0.00 40.82 2.17
4118 5980 4.142556 GCTAGATACTAACTCGGAGATGCC 60.143 50.000 12.86 0.00 33.89 4.40
4186 6049 1.300620 CGAGGTCAACGGAGCAACA 60.301 57.895 0.00 0.00 43.97 3.33
4246 6111 2.092968 GGGTGTCATGCAATGTCCTAGA 60.093 50.000 0.00 0.00 46.80 2.43
4295 6178 0.179108 GATCTTCGGGTCAACGGAGG 60.179 60.000 0.00 0.00 39.91 4.30
4354 6237 1.398692 TCACAACCAGGTGGAAAAGC 58.601 50.000 0.00 0.00 39.27 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.