Multiple sequence alignment - TraesCS4A01G038300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G038300 chr4A 100.000 6023 0 0 1 6023 30393408 30399430 0.000000e+00 11123.0
1 TraesCS4A01G038300 chr4A 89.305 187 14 3 5079 5264 67534252 67534071 4.700000e-56 230.0
2 TraesCS4A01G038300 chr4A 89.617 183 13 3 5083 5264 432429195 432429018 1.690000e-55 228.0
3 TraesCS4A01G038300 chr4B 86.447 2029 189 43 3295 5281 540321373 540319389 0.000000e+00 2145.0
4 TraesCS4A01G038300 chr4B 87.866 1607 96 41 553 2097 540324032 540322463 0.000000e+00 1796.0
5 TraesCS4A01G038300 chr4B 86.564 521 25 14 2097 2577 540322434 540321919 3.200000e-147 532.0
6 TraesCS4A01G038300 chr4B 87.402 381 34 7 5653 6023 540318736 540318360 5.580000e-115 425.0
7 TraesCS4A01G038300 chr4B 93.462 260 17 0 2874 3133 540321631 540321372 2.630000e-103 387.0
8 TraesCS4A01G038300 chr4B 90.761 184 12 3 371 551 540324263 540324082 2.170000e-59 241.0
9 TraesCS4A01G038300 chr4B 94.203 69 3 1 2559 2627 540321905 540321838 2.970000e-18 104.0
10 TraesCS4A01G038300 chr4D 89.822 1572 86 34 553 2082 437690828 437689289 0.000000e+00 1949.0
11 TraesCS4A01G038300 chr4D 90.436 1077 87 10 4070 5134 437687010 437685938 0.000000e+00 1404.0
12 TraesCS4A01G038300 chr4D 91.472 598 26 11 2559 3133 437688422 437687827 0.000000e+00 798.0
13 TraesCS4A01G038300 chr4D 85.772 738 53 24 3295 3998 437687828 437687109 0.000000e+00 734.0
14 TraesCS4A01G038300 chr4D 90.442 565 43 5 3 558 437691418 437690856 0.000000e+00 734.0
15 TraesCS4A01G038300 chr4D 88.846 520 15 12 2097 2577 437688948 437688433 3.110000e-167 599.0
16 TraesCS4A01G038300 chr4D 91.576 368 22 6 5660 6023 437685322 437684960 3.240000e-137 499.0
17 TraesCS4A01G038300 chr4D 93.220 59 4 0 5427 5485 437685767 437685709 2.990000e-13 87.9
18 TraesCS4A01G038300 chr6D 97.605 167 4 0 3132 3298 293177404 293177238 2.750000e-73 287.0
19 TraesCS4A01G038300 chr6D 95.531 179 7 1 3126 3303 243032884 243033062 9.880000e-73 285.0
20 TraesCS4A01G038300 chr6D 89.840 187 13 3 5079 5264 108500264 108500445 1.010000e-57 235.0
21 TraesCS4A01G038300 chr7B 97.041 169 4 1 3129 3296 595441890 595442058 3.550000e-72 283.0
22 TraesCS4A01G038300 chr7B 94.536 183 7 3 3128 3307 393400867 393400685 4.600000e-71 279.0
23 TraesCS4A01G038300 chr5A 97.576 165 4 0 3132 3296 458198878 458199042 3.550000e-72 283.0
24 TraesCS4A01G038300 chr5A 94.886 176 9 0 3131 3306 290391696 290391871 5.950000e-70 276.0
25 TraesCS4A01G038300 chr1D 96.491 171 6 0 3129 3299 180851741 180851571 3.550000e-72 283.0
26 TraesCS4A01G038300 chr1D 84.524 84 13 0 3727 3810 454225649 454225732 3.870000e-12 84.2
27 TraesCS4A01G038300 chr7D 96.491 171 5 1 3131 3300 86087420 86087590 1.280000e-71 281.0
28 TraesCS4A01G038300 chr7A 92.473 186 12 2 3116 3301 580661173 580660990 1.290000e-66 265.0
29 TraesCS4A01G038300 chr6A 89.840 187 13 3 5079 5264 338457275 338457094 1.010000e-57 235.0
30 TraesCS4A01G038300 chrUn 89.305 187 14 3 5079 5264 391022427 391022246 4.700000e-56 230.0
31 TraesCS4A01G038300 chrUn 88.770 187 15 3 5079 5264 182455362 182455543 2.180000e-54 224.0
32 TraesCS4A01G038300 chrUn 88.770 187 15 3 5079 5264 231551128 231550947 2.180000e-54 224.0
33 TraesCS4A01G038300 chr1A 89.305 187 14 3 5079 5264 68927645 68927826 4.700000e-56 230.0
34 TraesCS4A01G038300 chr1A 84.524 84 13 0 3727 3810 548561193 548561276 3.870000e-12 84.2
35 TraesCS4A01G038300 chr1B 84.524 84 13 0 3727 3810 624727359 624727442 3.870000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G038300 chr4A 30393408 30399430 6022 False 11123.000000 11123 100.000000 1 6023 1 chr4A.!!$F1 6022
1 TraesCS4A01G038300 chr4B 540318360 540324263 5903 True 804.285714 2145 89.529286 371 6023 7 chr4B.!!$R1 5652
2 TraesCS4A01G038300 chr4D 437684960 437691418 6458 True 850.612500 1949 90.198250 3 6023 8 chr4D.!!$R1 6020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 553 0.112995 AAGGCCATGGACAAGCAAGA 59.887 50.0 22.78 0.0 0.0 3.02 F
940 1021 0.175989 CCCAGAAAGTAGAGCCCGAC 59.824 60.0 0.00 0.0 0.0 4.79 F
941 1022 0.175989 CCAGAAAGTAGAGCCCGACC 59.824 60.0 0.00 0.0 0.0 4.79 F
948 1029 0.327259 GTAGAGCCCGACCCCTTTTT 59.673 55.0 0.00 0.0 0.0 1.94 F
1249 1359 0.612174 CTGGAGGTTCGGAGGTCAGA 60.612 60.0 0.00 0.0 0.0 3.27 F
2973 3559 0.804989 GTGCAGCCATGTTACCTCAC 59.195 55.0 0.00 0.0 0.0 3.51 F
4103 4768 0.824759 GGGGTTGTATGCGAGAGAGT 59.175 55.0 0.00 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2500 3025 0.176449 GGGGTGCATCCTTTTCATGC 59.824 55.000 17.44 0.00 45.92 4.06 R
2630 3187 1.134699 CACAGGTACACATCATCGCCT 60.135 52.381 0.00 0.00 0.00 5.52 R
2631 3188 1.290203 CACAGGTACACATCATCGCC 58.710 55.000 0.00 0.00 0.00 5.54 R
2640 3197 1.612676 GGGGGAAAACACAGGTACAC 58.387 55.000 0.00 0.00 0.00 2.90 R
3173 3759 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16 R
4289 4956 0.101759 CAGCAAGTGGTATGCATGCC 59.898 55.000 25.45 25.45 46.22 4.40 R
5162 5876 0.108615 CTCCGAGTTTCGCACATCCT 60.109 55.000 0.00 0.00 38.82 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.722056 GAAAAATAATACTCGCAATCTCATGTT 57.278 29.630 0.00 0.00 0.00 2.71
60 61 4.584029 ACTCGCAATCTCATGTTAAACG 57.416 40.909 0.00 0.00 0.00 3.60
116 117 6.144080 CGAACATTACCTTTATTCTAGCTCCG 59.856 42.308 0.00 0.00 0.00 4.63
119 120 1.140816 CCTTTATTCTAGCTCCGCGC 58.859 55.000 0.00 0.00 39.57 6.86
120 121 1.140816 CTTTATTCTAGCTCCGCGCC 58.859 55.000 0.00 0.00 40.39 6.53
135 136 0.822164 GCGCCTAGGGTCAAGACTTA 59.178 55.000 11.72 0.00 0.00 2.24
224 225 6.862209 TGCTGCCTAGTTAATTTAACCAATG 58.138 36.000 14.24 4.23 39.47 2.82
227 228 7.639113 TGCCTAGTTAATTTAACCAATGGAG 57.361 36.000 6.16 4.60 39.47 3.86
228 229 7.179269 TGCCTAGTTAATTTAACCAATGGAGT 58.821 34.615 6.16 0.00 39.47 3.85
282 283 7.939588 GCTAAGAACAATCTATGATAAACCCCT 59.060 37.037 0.00 0.00 33.77 4.79
283 284 9.277783 CTAAGAACAATCTATGATAAACCCCTG 57.722 37.037 0.00 0.00 33.77 4.45
400 409 2.673368 GACCTTCACATGTGAACCGATC 59.327 50.000 32.36 22.59 43.90 3.69
402 411 2.932614 CCTTCACATGTGAACCGATCTC 59.067 50.000 32.36 0.00 43.90 2.75
411 421 7.535258 CACATGTGAACCGATCTCTTTTAAAAG 59.465 37.037 21.64 19.91 37.36 2.27
454 464 0.617820 TGCCCCTCACCTACTCTTCC 60.618 60.000 0.00 0.00 0.00 3.46
455 465 0.617820 GCCCCTCACCTACTCTTCCA 60.618 60.000 0.00 0.00 0.00 3.53
456 466 1.490574 CCCCTCACCTACTCTTCCAG 58.509 60.000 0.00 0.00 0.00 3.86
458 468 0.457851 CCTCACCTACTCTTCCAGCG 59.542 60.000 0.00 0.00 0.00 5.18
540 553 0.112995 AAGGCCATGGACAAGCAAGA 59.887 50.000 22.78 0.00 0.00 3.02
543 556 0.179119 GCCATGGACAAGCAAGATGC 60.179 55.000 18.40 0.00 45.46 3.91
548 561 1.503542 GACAAGCAAGATGCCGGTG 59.496 57.895 1.90 0.00 46.52 4.94
632 692 1.448893 GACGGGCCAAACTATGCGA 60.449 57.895 4.39 0.00 0.00 5.10
642 702 4.446051 GCCAAACTATGCGAGAGAGATAAC 59.554 45.833 0.00 0.00 0.00 1.89
682 754 1.319614 AAGCAGAGACGAGCTCCTCC 61.320 60.000 8.47 1.04 45.10 4.30
683 755 2.781158 GCAGAGACGAGCTCCTCCC 61.781 68.421 8.47 0.00 45.10 4.30
684 756 1.077068 CAGAGACGAGCTCCTCCCT 60.077 63.158 8.47 0.00 45.10 4.20
784 856 2.443255 AGGAGACACACCACCTCAAAAT 59.557 45.455 0.00 0.00 0.00 1.82
820 892 1.226311 CTTCCCTCCCCATTAAGCCT 58.774 55.000 0.00 0.00 0.00 4.58
821 893 1.143889 CTTCCCTCCCCATTAAGCCTC 59.856 57.143 0.00 0.00 0.00 4.70
822 894 0.697854 TCCCTCCCCATTAAGCCTCC 60.698 60.000 0.00 0.00 0.00 4.30
829 901 1.451936 CATTAAGCCTCCTCCCCCG 59.548 63.158 0.00 0.00 0.00 5.73
869 945 3.790437 CGCCCCTCACTGCCATCT 61.790 66.667 0.00 0.00 0.00 2.90
870 946 2.679716 GCCCCTCACTGCCATCTT 59.320 61.111 0.00 0.00 0.00 2.40
925 1005 4.598894 CTCGCCGCTGATCCCCAG 62.599 72.222 0.00 0.00 45.67 4.45
929 1010 1.821332 GCCGCTGATCCCCAGAAAG 60.821 63.158 0.00 0.00 45.78 2.62
930 1011 1.604378 CCGCTGATCCCCAGAAAGT 59.396 57.895 0.00 0.00 45.78 2.66
931 1012 0.830648 CCGCTGATCCCCAGAAAGTA 59.169 55.000 0.00 0.00 45.78 2.24
932 1013 1.202580 CCGCTGATCCCCAGAAAGTAG 60.203 57.143 0.00 0.00 45.78 2.57
933 1014 1.757118 CGCTGATCCCCAGAAAGTAGA 59.243 52.381 0.00 0.00 45.78 2.59
934 1015 2.223923 CGCTGATCCCCAGAAAGTAGAG 60.224 54.545 0.00 0.00 45.78 2.43
936 1017 2.103941 CTGATCCCCAGAAAGTAGAGCC 59.896 54.545 0.00 0.00 45.78 4.70
937 1018 1.418264 GATCCCCAGAAAGTAGAGCCC 59.582 57.143 0.00 0.00 0.00 5.19
939 1020 0.976073 CCCCAGAAAGTAGAGCCCGA 60.976 60.000 0.00 0.00 0.00 5.14
940 1021 0.175989 CCCAGAAAGTAGAGCCCGAC 59.824 60.000 0.00 0.00 0.00 4.79
941 1022 0.175989 CCAGAAAGTAGAGCCCGACC 59.824 60.000 0.00 0.00 0.00 4.79
943 1024 0.976590 AGAAAGTAGAGCCCGACCCC 60.977 60.000 0.00 0.00 0.00 4.95
944 1025 0.976590 GAAAGTAGAGCCCGACCCCT 60.977 60.000 0.00 0.00 0.00 4.79
945 1026 0.546988 AAAGTAGAGCCCGACCCCTT 60.547 55.000 0.00 0.00 0.00 3.95
946 1027 0.546988 AAGTAGAGCCCGACCCCTTT 60.547 55.000 0.00 0.00 0.00 3.11
948 1029 0.327259 GTAGAGCCCGACCCCTTTTT 59.673 55.000 0.00 0.00 0.00 1.94
1216 1326 9.869757 AGTTTTATTTTGGTTTATGTAGATGCC 57.130 29.630 0.00 0.00 0.00 4.40
1218 1328 7.633193 TTATTTTGGTTTATGTAGATGCCGT 57.367 32.000 0.00 0.00 0.00 5.68
1249 1359 0.612174 CTGGAGGTTCGGAGGTCAGA 60.612 60.000 0.00 0.00 0.00 3.27
1335 1445 1.401905 GGGTGTTTTGGATGCGAGATC 59.598 52.381 0.00 0.00 0.00 2.75
1508 1618 1.363744 CATCGGTGGTGCTTCTTCTC 58.636 55.000 0.00 0.00 0.00 2.87
1638 1760 3.972276 GGCCTCTAGCGAGCTCGG 61.972 72.222 35.10 20.11 45.17 4.63
1738 1869 4.821589 GGCGAAGGGGCAGAGACG 62.822 72.222 0.00 0.00 41.77 4.18
1739 1870 4.821589 GCGAAGGGGCAGAGACGG 62.822 72.222 0.00 0.00 0.00 4.79
1740 1871 3.068691 CGAAGGGGCAGAGACGGA 61.069 66.667 0.00 0.00 0.00 4.69
1741 1872 2.896443 GAAGGGGCAGAGACGGAG 59.104 66.667 0.00 0.00 0.00 4.63
1742 1873 3.378399 GAAGGGGCAGAGACGGAGC 62.378 68.421 0.00 0.00 0.00 4.70
1746 1877 3.071206 GGCAGAGACGGAGCCTGA 61.071 66.667 0.00 0.00 44.92 3.86
1747 1878 2.493973 GCAGAGACGGAGCCTGAG 59.506 66.667 0.00 0.00 0.00 3.35
1748 1879 3.074999 GCAGAGACGGAGCCTGAGG 62.075 68.421 0.00 0.00 0.00 3.86
1822 1974 1.227089 CTTGGATGACTCCGAGGCG 60.227 63.158 0.00 0.00 46.01 5.52
2021 2178 2.064014 CACCGATGATCCGATGATGTG 58.936 52.381 0.00 0.00 0.00 3.21
2062 2219 6.215845 TGCCTTTTGATTTCTTCAAGTTAGC 58.784 36.000 0.00 0.00 44.90 3.09
2065 2222 7.522889 GCCTTTTGATTTCTTCAAGTTAGCTCT 60.523 37.037 0.00 0.00 44.90 4.09
2141 2333 3.670055 CGTAGCAATGCTTCCTTTTTGTG 59.330 43.478 14.85 0.00 40.44 3.33
2190 2382 5.583854 GCTCTGCTCTTCTGTTGATATTTGA 59.416 40.000 0.00 0.00 0.00 2.69
2192 2384 7.201714 GCTCTGCTCTTCTGTTGATATTTGATT 60.202 37.037 0.00 0.00 0.00 2.57
2194 2386 8.456471 TCTGCTCTTCTGTTGATATTTGATTTG 58.544 33.333 0.00 0.00 0.00 2.32
2195 2387 7.541162 TGCTCTTCTGTTGATATTTGATTTGG 58.459 34.615 0.00 0.00 0.00 3.28
2196 2388 7.177216 TGCTCTTCTGTTGATATTTGATTTGGT 59.823 33.333 0.00 0.00 0.00 3.67
2215 2717 5.275067 TGGTTTGGGCTATTTTGATATGC 57.725 39.130 0.00 0.00 0.00 3.14
2313 2815 1.632018 AATTAGGCAGTGGGCGGCTA 61.632 55.000 9.56 0.00 46.16 3.93
2384 2891 8.296713 TGTTGATATTTAGTTTCAGTTTCTGGC 58.703 33.333 0.00 0.00 31.51 4.85
2397 2920 8.547967 TTCAGTTTCTGGCTACTTACTATTTG 57.452 34.615 0.00 0.00 31.51 2.32
2399 2922 5.880887 AGTTTCTGGCTACTTACTATTTGGC 59.119 40.000 0.00 0.00 0.00 4.52
2472 2997 4.394729 TGTACTAAAAGGGCCTTCTGTTG 58.605 43.478 21.20 11.28 0.00 3.33
2500 3025 5.941555 ACTGAGGAAATTAGGTCCTACTG 57.058 43.478 0.00 0.00 45.87 2.74
2535 3060 4.469227 TGCACCCCTGTTTGCATAAATTAT 59.531 37.500 0.00 0.00 43.79 1.28
2591 3148 2.224867 ACTTTGTCCAATACTGCAGCCT 60.225 45.455 15.27 0.00 0.00 4.58
2606 3163 3.181449 TGCAGCCTTGTCTGTAAACCTTA 60.181 43.478 0.00 0.00 36.49 2.69
2632 3189 7.579726 GCTTGTGCTGTTATATGAAGATTAGG 58.420 38.462 0.00 0.00 36.03 2.69
2633 3190 7.496529 TTGTGCTGTTATATGAAGATTAGGC 57.503 36.000 0.00 0.00 0.00 3.93
2634 3191 5.696270 TGTGCTGTTATATGAAGATTAGGCG 59.304 40.000 0.00 0.00 0.00 5.52
2635 3192 5.926542 GTGCTGTTATATGAAGATTAGGCGA 59.073 40.000 0.00 0.00 0.00 5.54
2640 3197 8.707938 TGTTATATGAAGATTAGGCGATGATG 57.292 34.615 0.00 0.00 0.00 3.07
2642 3199 8.598924 GTTATATGAAGATTAGGCGATGATGTG 58.401 37.037 0.00 0.00 0.00 3.21
2650 3230 1.134699 AGGCGATGATGTGTACCTGTG 60.135 52.381 0.00 0.00 0.00 3.66
2655 3241 4.669197 GCGATGATGTGTACCTGTGTTTTC 60.669 45.833 0.00 0.00 0.00 2.29
2684 3270 2.143925 GTAGGAACAAGTGACCTGTGC 58.856 52.381 0.00 0.00 35.52 4.57
2709 3295 1.291877 CCAGGGAGAACAACGCTTCG 61.292 60.000 0.00 0.00 0.00 3.79
2766 3352 6.517605 TGCTTTATATCTTGTATACGCACCA 58.482 36.000 0.00 0.00 0.00 4.17
2769 3355 9.146984 GCTTTATATCTTGTATACGCACCATAA 57.853 33.333 0.00 0.00 0.00 1.90
2794 3380 5.814705 GCTGAGTATAGCTTGATCTGTTTGT 59.185 40.000 0.00 0.00 40.52 2.83
2805 3391 3.822167 TGATCTGTTTGTCACACATGCAT 59.178 39.130 0.00 0.00 0.00 3.96
2831 3417 5.480422 GGGTTATTCAAGATGTCCCTTGTTT 59.520 40.000 0.00 0.00 42.95 2.83
2868 3454 3.244911 CCTTTCTAACCCTTGAAGCCTGA 60.245 47.826 0.00 0.00 0.00 3.86
2873 3459 1.734655 ACCCTTGAAGCCTGAGAAGA 58.265 50.000 0.00 0.00 0.00 2.87
2943 3529 5.230182 TCAGTAGCTGTATCAACACTTGTG 58.770 41.667 0.00 0.00 32.61 3.33
2973 3559 0.804989 GTGCAGCCATGTTACCTCAC 59.195 55.000 0.00 0.00 0.00 3.51
3026 3612 7.990886 TGTTCTTTTCAGTCTGTTGTAGGTAAT 59.009 33.333 0.00 0.00 0.00 1.89
3131 3717 5.212532 TGCTGTTTAAGGCATTGTCAAAT 57.787 34.783 0.00 0.00 33.23 2.32
3132 3718 6.338214 TGCTGTTTAAGGCATTGTCAAATA 57.662 33.333 0.00 0.00 33.23 1.40
3133 3719 6.155827 TGCTGTTTAAGGCATTGTCAAATAC 58.844 36.000 0.00 0.00 33.23 1.89
3134 3720 6.015519 TGCTGTTTAAGGCATTGTCAAATACT 60.016 34.615 0.00 0.00 33.23 2.12
3135 3721 6.528072 GCTGTTTAAGGCATTGTCAAATACTC 59.472 38.462 0.00 0.00 0.00 2.59
3136 3722 6.919721 TGTTTAAGGCATTGTCAAATACTCC 58.080 36.000 0.00 0.00 0.00 3.85
3137 3723 6.071616 TGTTTAAGGCATTGTCAAATACTCCC 60.072 38.462 0.00 0.00 0.00 4.30
3138 3724 4.322057 AAGGCATTGTCAAATACTCCCT 57.678 40.909 0.00 0.00 0.00 4.20
3139 3725 3.891049 AGGCATTGTCAAATACTCCCTC 58.109 45.455 0.00 0.00 0.00 4.30
3140 3726 3.525199 AGGCATTGTCAAATACTCCCTCT 59.475 43.478 0.00 0.00 0.00 3.69
3141 3727 3.629398 GGCATTGTCAAATACTCCCTCTG 59.371 47.826 0.00 0.00 0.00 3.35
3142 3728 4.265073 GCATTGTCAAATACTCCCTCTGT 58.735 43.478 0.00 0.00 0.00 3.41
3143 3729 4.702131 GCATTGTCAAATACTCCCTCTGTT 59.298 41.667 0.00 0.00 0.00 3.16
3144 3730 5.163713 GCATTGTCAAATACTCCCTCTGTTC 60.164 44.000 0.00 0.00 0.00 3.18
3145 3731 4.553330 TGTCAAATACTCCCTCTGTTCC 57.447 45.455 0.00 0.00 0.00 3.62
3146 3732 4.168101 TGTCAAATACTCCCTCTGTTCCT 58.832 43.478 0.00 0.00 0.00 3.36
3147 3733 5.338632 TGTCAAATACTCCCTCTGTTCCTA 58.661 41.667 0.00 0.00 0.00 2.94
3148 3734 5.783360 TGTCAAATACTCCCTCTGTTCCTAA 59.217 40.000 0.00 0.00 0.00 2.69
3149 3735 6.271391 TGTCAAATACTCCCTCTGTTCCTAAA 59.729 38.462 0.00 0.00 0.00 1.85
3150 3736 7.037586 TGTCAAATACTCCCTCTGTTCCTAAAT 60.038 37.037 0.00 0.00 0.00 1.40
3151 3737 8.483758 GTCAAATACTCCCTCTGTTCCTAAATA 58.516 37.037 0.00 0.00 0.00 1.40
3152 3738 9.225682 TCAAATACTCCCTCTGTTCCTAAATAT 57.774 33.333 0.00 0.00 0.00 1.28
3177 3763 9.883142 ATAGGTCTTTCTAGAGATTTCAACAAG 57.117 33.333 0.00 0.00 0.00 3.16
3178 3764 7.740805 AGGTCTTTCTAGAGATTTCAACAAGT 58.259 34.615 0.00 0.00 0.00 3.16
3179 3765 7.659390 AGGTCTTTCTAGAGATTTCAACAAGTG 59.341 37.037 0.00 0.00 0.00 3.16
3180 3766 7.657761 GGTCTTTCTAGAGATTTCAACAAGTGA 59.342 37.037 0.00 0.00 0.00 3.41
3181 3767 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3182 3768 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3183 3769 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3184 3770 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3185 3771 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3186 3772 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3188 3774 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3189 3775 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3190 3776 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3191 3777 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3192 3778 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3193 3779 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3194 3780 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3195 3781 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3196 3782 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3197 3783 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3198 3784 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3199 3785 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3200 3786 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3201 3787 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3202 3788 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3203 3789 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3204 3790 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3205 3791 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3206 3792 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3207 3793 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3208 3794 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3209 3795 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3210 3796 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3211 3797 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3212 3798 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3251 3837 9.788889 CTATATACATCCGTATATGGTAGTCCA 57.211 37.037 10.85 3.57 46.31 4.02
3268 3854 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
3272 3858 9.579932 AGTCCATTTGAAATCTCTAAAAAGACT 57.420 29.630 0.00 0.00 0.00 3.24
3290 3876 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3291 3877 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
3292 3878 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
3293 3879 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
3315 3901 8.992073 GGAAGTAGTTAAATGTAAAGAACGGAA 58.008 33.333 0.00 0.00 0.00 4.30
3339 3925 7.661536 AGCACTTGTTACATAGATCCTTCTA 57.338 36.000 0.00 0.00 38.79 2.10
3392 3978 8.565896 TCAGCATTACTCAATTAACTCATGTT 57.434 30.769 0.00 0.00 39.98 2.71
3397 3984 9.345517 CATTACTCAATTAACTCATGTTTGGTG 57.654 33.333 0.00 0.00 37.59 4.17
3422 4009 8.898761 TGTAAGCAACTCTTTGTTAAGATTTCA 58.101 29.630 0.00 0.00 39.58 2.69
3516 4124 5.337788 CCATCTATAGTTCCTAGAAGGCCT 58.662 45.833 0.00 0.00 34.61 5.19
3599 4210 6.647067 GGTTCCTTCATGCAGATACTATACAC 59.353 42.308 0.00 0.00 0.00 2.90
3685 4302 6.270156 TGCAATCAATTCATGTTGCTCTTA 57.730 33.333 15.03 0.00 41.99 2.10
3760 4379 3.969117 TGCTTATTTCATAGCTTGCGG 57.031 42.857 0.00 0.00 0.00 5.69
3821 4440 6.095021 GGTCATTTGAAGGTAAACCATACCTC 59.905 42.308 7.57 3.27 46.52 3.85
3822 4441 6.657541 GTCATTTGAAGGTAAACCATACCTCA 59.342 38.462 7.57 5.47 46.52 3.86
3825 4444 6.381498 TTGAAGGTAAACCATACCTCATCA 57.619 37.500 7.57 6.34 46.52 3.07
3830 4449 5.665812 AGGTAAACCATACCTCATCAGCTAA 59.334 40.000 1.26 0.00 44.10 3.09
3832 4451 6.998673 GGTAAACCATACCTCATCAGCTAAAT 59.001 38.462 0.00 0.00 34.82 1.40
3834 4453 7.961326 AAACCATACCTCATCAGCTAAATTT 57.039 32.000 0.00 0.00 0.00 1.82
3836 4455 5.760253 ACCATACCTCATCAGCTAAATTTCG 59.240 40.000 0.00 0.00 0.00 3.46
3841 4460 4.346129 CTCATCAGCTAAATTTCGGTTGC 58.654 43.478 0.00 0.00 0.00 4.17
3842 4461 4.009675 TCATCAGCTAAATTTCGGTTGCT 58.990 39.130 0.00 0.00 0.00 3.91
3844 4463 4.846779 TCAGCTAAATTTCGGTTGCTTT 57.153 36.364 0.00 0.00 0.00 3.51
3851 4470 6.237569 GCTAAATTTCGGTTGCTTTATCTTGC 60.238 38.462 0.00 0.00 0.00 4.01
3869 4488 2.159467 GCGAGTGCGTTTAATTCCTG 57.841 50.000 0.00 0.00 40.36 3.86
3870 4489 1.202031 GCGAGTGCGTTTAATTCCTGG 60.202 52.381 0.00 0.00 40.36 4.45
3871 4490 1.396996 CGAGTGCGTTTAATTCCTGGG 59.603 52.381 0.00 0.00 0.00 4.45
3872 4491 2.433436 GAGTGCGTTTAATTCCTGGGT 58.567 47.619 0.00 0.00 0.00 4.51
3873 4492 2.159382 AGTGCGTTTAATTCCTGGGTG 58.841 47.619 0.00 0.00 0.00 4.61
3874 4493 1.883926 GTGCGTTTAATTCCTGGGTGT 59.116 47.619 0.00 0.00 0.00 4.16
3875 4494 3.075884 GTGCGTTTAATTCCTGGGTGTA 58.924 45.455 0.00 0.00 0.00 2.90
3876 4495 3.075884 TGCGTTTAATTCCTGGGTGTAC 58.924 45.455 0.00 0.00 0.00 2.90
3877 4496 3.075884 GCGTTTAATTCCTGGGTGTACA 58.924 45.455 0.00 0.00 0.00 2.90
3878 4497 3.502979 GCGTTTAATTCCTGGGTGTACAA 59.497 43.478 0.00 0.00 0.00 2.41
3879 4498 4.023021 GCGTTTAATTCCTGGGTGTACAAA 60.023 41.667 0.00 0.00 0.00 2.83
3880 4499 5.507650 GCGTTTAATTCCTGGGTGTACAAAA 60.508 40.000 0.00 0.00 0.00 2.44
3881 4500 6.505272 CGTTTAATTCCTGGGTGTACAAAAA 58.495 36.000 0.00 0.00 0.00 1.94
3882 4501 6.639279 CGTTTAATTCCTGGGTGTACAAAAAG 59.361 38.462 0.00 0.00 0.00 2.27
3883 4502 7.468906 CGTTTAATTCCTGGGTGTACAAAAAGA 60.469 37.037 0.00 0.00 0.00 2.52
3899 4518 4.513406 AAAAGAAACTCCTGGGTGTACA 57.487 40.909 0.00 0.00 0.00 2.90
3906 4525 3.763057 ACTCCTGGGTGTACAAATTTCC 58.237 45.455 0.00 0.00 0.00 3.13
3911 4530 4.021456 CCTGGGTGTACAAATTTCCCTTTC 60.021 45.833 17.00 0.00 38.95 2.62
3912 4531 4.547671 TGGGTGTACAAATTTCCCTTTCA 58.452 39.130 17.00 0.00 38.95 2.69
3913 4532 4.586841 TGGGTGTACAAATTTCCCTTTCAG 59.413 41.667 17.00 0.00 38.95 3.02
3914 4533 4.830600 GGGTGTACAAATTTCCCTTTCAGA 59.169 41.667 10.54 0.00 35.63 3.27
3915 4534 5.303333 GGGTGTACAAATTTCCCTTTCAGAA 59.697 40.000 10.54 0.00 35.63 3.02
3916 4535 6.183360 GGGTGTACAAATTTCCCTTTCAGAAA 60.183 38.462 10.54 0.00 37.61 2.52
3917 4536 6.923508 GGTGTACAAATTTCCCTTTCAGAAAG 59.076 38.462 15.18 15.18 36.71 2.62
3918 4537 7.417456 GGTGTACAAATTTCCCTTTCAGAAAGT 60.417 37.037 19.58 3.56 36.71 2.66
3919 4538 7.435192 GTGTACAAATTTCCCTTTCAGAAAGTG 59.565 37.037 19.58 10.23 36.71 3.16
3940 4570 5.699839 GTGTGTTCACTCTTTGAAAGTGTT 58.300 37.500 9.66 0.00 46.09 3.32
3965 4595 7.165460 TGTTAGCTAGCAGTTAACATCAGTA 57.835 36.000 18.83 0.00 43.65 2.74
3983 4613 9.809096 ACATCAGTATGTTTTAGATGTCAGTAG 57.191 33.333 0.00 0.00 44.07 2.57
4000 4630 7.706159 TGTCAGTAGCTAATTTATTTGCCATG 58.294 34.615 0.00 0.00 38.91 3.66
4001 4631 7.555914 TGTCAGTAGCTAATTTATTTGCCATGA 59.444 33.333 0.00 5.26 38.91 3.07
4018 4648 7.759489 TGCCATGATTACCTTCAATTATACC 57.241 36.000 0.00 0.00 0.00 2.73
4020 4650 6.430000 GCCATGATTACCTTCAATTATACCGT 59.570 38.462 0.00 0.00 0.00 4.83
4021 4651 7.604927 GCCATGATTACCTTCAATTATACCGTA 59.395 37.037 0.00 0.00 0.00 4.02
4022 4652 8.932791 CCATGATTACCTTCAATTATACCGTAC 58.067 37.037 0.00 0.00 0.00 3.67
4023 4653 9.483916 CATGATTACCTTCAATTATACCGTACA 57.516 33.333 0.00 0.00 0.00 2.90
4025 4655 9.887629 TGATTACCTTCAATTATACCGTACAAA 57.112 29.630 0.00 0.00 0.00 2.83
4034 4664 9.629878 TCAATTATACCGTACAAAATATGGGTT 57.370 29.630 0.00 0.00 0.00 4.11
4054 4684 7.861629 TGGGTTTATGTTCTCATCATACTCTT 58.138 34.615 0.00 0.00 35.70 2.85
4055 4685 7.770433 TGGGTTTATGTTCTCATCATACTCTTG 59.230 37.037 0.00 0.00 35.70 3.02
4057 4687 9.167311 GGTTTATGTTCTCATCATACTCTTGTT 57.833 33.333 0.00 0.00 35.70 2.83
4103 4768 0.824759 GGGGTTGTATGCGAGAGAGT 59.175 55.000 0.00 0.00 0.00 3.24
4145 4810 3.343941 TTGTTACGGAGAATCAAGGGG 57.656 47.619 0.00 0.00 36.25 4.79
4184 4849 1.555075 AGGAAGTTCTTGCTATGGCGA 59.445 47.619 4.84 0.00 42.25 5.54
4217 4882 1.276622 GTCCCCTGGCTCTTCAACTA 58.723 55.000 0.00 0.00 0.00 2.24
4249 4914 2.575735 TCACTTTGATGGGCAGGTATGA 59.424 45.455 0.00 0.00 0.00 2.15
4261 4926 4.646492 GGGCAGGTATGATCTTTTGTCAAT 59.354 41.667 0.00 0.00 0.00 2.57
4262 4927 5.127682 GGGCAGGTATGATCTTTTGTCAATT 59.872 40.000 0.00 0.00 0.00 2.32
4263 4928 6.351286 GGGCAGGTATGATCTTTTGTCAATTT 60.351 38.462 0.00 0.00 0.00 1.82
4264 4929 7.099120 GGCAGGTATGATCTTTTGTCAATTTT 58.901 34.615 0.00 0.00 0.00 1.82
4265 4930 7.603784 GGCAGGTATGATCTTTTGTCAATTTTT 59.396 33.333 0.00 0.00 0.00 1.94
4289 4956 8.861033 TTTTGTGTGAATTCTTTCATCAAGAG 57.139 30.769 7.05 0.00 42.76 2.85
4290 4957 6.564709 TGTGTGAATTCTTTCATCAAGAGG 57.435 37.500 7.05 0.00 42.76 3.69
4291 4958 5.048504 TGTGTGAATTCTTTCATCAAGAGGC 60.049 40.000 7.05 0.00 42.76 4.70
4293 4960 5.713389 TGTGAATTCTTTCATCAAGAGGCAT 59.287 36.000 7.05 0.00 42.76 4.40
4294 4961 6.034591 GTGAATTCTTTCATCAAGAGGCATG 58.965 40.000 7.05 0.00 42.76 4.06
4295 4962 4.650754 ATTCTTTCATCAAGAGGCATGC 57.349 40.909 9.90 9.90 42.76 4.06
4296 4963 3.076079 TCTTTCATCAAGAGGCATGCA 57.924 42.857 21.36 0.00 36.51 3.96
4305 4976 2.048444 AGAGGCATGCATACCACTTG 57.952 50.000 21.36 0.00 0.00 3.16
4310 4981 2.016318 GCATGCATACCACTTGCTGTA 58.984 47.619 14.21 0.00 40.77 2.74
4339 5010 7.589958 TTCTTGGTGGTTAATTGTACATGTT 57.410 32.000 2.30 0.00 0.00 2.71
4340 5011 7.589958 TCTTGGTGGTTAATTGTACATGTTT 57.410 32.000 2.30 0.00 0.00 2.83
4341 5012 8.012957 TCTTGGTGGTTAATTGTACATGTTTT 57.987 30.769 2.30 0.00 0.00 2.43
4401 5072 8.492673 TTCATGTATCTAATATTGGCGATTCC 57.507 34.615 0.00 0.00 0.00 3.01
4404 5075 3.328382 TCTAATATTGGCGATTCCGGG 57.672 47.619 0.00 0.00 37.80 5.73
4482 5153 4.274705 GGTTTCAATTTCCCGTTGCAAATT 59.725 37.500 0.00 0.00 33.37 1.82
4491 5162 2.095819 CCCGTTGCAAATTGAAAATGGC 60.096 45.455 0.00 0.00 0.00 4.40
4494 5165 3.661419 CGTTGCAAATTGAAAATGGCGTC 60.661 43.478 0.00 0.00 0.00 5.19
4526 5197 1.139989 CTTGTACAGGTGACACAGCG 58.860 55.000 8.08 0.00 36.92 5.18
4533 5204 1.009675 GGTGACACAGCGCTTGTTG 60.010 57.895 20.82 15.23 38.16 3.33
4534 5205 1.714899 GGTGACACAGCGCTTGTTGT 61.715 55.000 20.82 17.87 38.16 3.32
4535 5206 0.316196 GTGACACAGCGCTTGTTGTC 60.316 55.000 26.09 26.09 38.16 3.18
4536 5207 1.083401 GACACAGCGCTTGTTGTCG 60.083 57.895 21.51 7.35 38.16 4.35
4541 5212 3.649986 GCGCTTGTTGTCGCCACT 61.650 61.111 0.00 0.00 45.01 4.00
4551 5227 3.196901 TGTTGTCGCCACTATCCTGTTAT 59.803 43.478 0.00 0.00 0.00 1.89
4554 5230 5.196341 TGTCGCCACTATCCTGTTATTAG 57.804 43.478 0.00 0.00 0.00 1.73
4558 5234 6.200475 GTCGCCACTATCCTGTTATTAGTTTC 59.800 42.308 0.00 0.00 0.00 2.78
4627 5304 8.897457 TTATTCTCAGAATTACGCTATCGATC 57.103 34.615 4.90 0.00 39.41 3.69
4710 5387 1.002430 GAGGTGGCAGACATTGTCTCA 59.998 52.381 16.39 9.89 41.37 3.27
4754 5431 1.269465 GCCTACGGTCCGAACCTAATC 60.269 57.143 20.51 0.00 44.04 1.75
4767 5444 6.544564 TCCGAACCTAATCACTTTTCTTGTTT 59.455 34.615 0.00 0.00 0.00 2.83
4769 5446 7.414436 CGAACCTAATCACTTTTCTTGTTTGA 58.586 34.615 0.00 0.00 0.00 2.69
4772 5449 9.936759 AACCTAATCACTTTTCTTGTTTGAAAA 57.063 25.926 0.00 0.00 41.75 2.29
4803 5480 8.999905 AAACCTAATAAACCAACCTACAGAAA 57.000 30.769 0.00 0.00 0.00 2.52
4804 5481 8.999905 AACCTAATAAACCAACCTACAGAAAA 57.000 30.769 0.00 0.00 0.00 2.29
4819 5496 9.533831 ACCTACAGAAAATATGAAACCAAGAAT 57.466 29.630 0.00 0.00 0.00 2.40
4831 5508 5.416639 TGAAACCAAGAATCATCCTGACATG 59.583 40.000 0.00 0.00 0.00 3.21
4835 5512 4.945543 CCAAGAATCATCCTGACATGTTCA 59.054 41.667 0.00 0.00 0.00 3.18
4839 5516 7.713734 AGAATCATCCTGACATGTTCATTTT 57.286 32.000 0.00 0.00 32.17 1.82
4840 5517 7.544622 AGAATCATCCTGACATGTTCATTTTG 58.455 34.615 0.00 0.00 32.17 2.44
4842 5519 4.523558 TCATCCTGACATGTTCATTTTGCA 59.476 37.500 0.00 0.00 32.17 4.08
4860 5537 3.689347 TGCATAACTTGTGCAGGAGATT 58.311 40.909 8.98 0.00 46.76 2.40
4863 5540 1.251251 AACTTGTGCAGGAGATTGCC 58.749 50.000 3.41 0.00 43.43 4.52
4866 5543 0.955428 TTGTGCAGGAGATTGCCGAC 60.955 55.000 0.00 0.00 43.43 4.79
5114 5791 4.321452 GGAGTTCAAATGCTTGCATCTTGA 60.321 41.667 19.17 19.17 32.14 3.02
5134 5811 3.760151 TGAGCTGAAGAATGACCCAATTG 59.240 43.478 0.00 0.00 0.00 2.32
5162 5876 6.250711 AGCTTCCATGCATTAATCATATCCA 58.749 36.000 0.00 0.00 34.99 3.41
5170 5884 5.416639 TGCATTAATCATATCCAGGATGTGC 59.583 40.000 19.23 8.10 32.47 4.57
5174 5888 3.836365 TCATATCCAGGATGTGCGAAA 57.164 42.857 19.23 1.73 32.47 3.46
5175 5889 3.466836 TCATATCCAGGATGTGCGAAAC 58.533 45.455 19.23 0.00 32.47 2.78
5176 5890 3.134623 TCATATCCAGGATGTGCGAAACT 59.865 43.478 19.23 0.00 32.47 2.66
5177 5891 2.029838 ATCCAGGATGTGCGAAACTC 57.970 50.000 0.00 0.00 0.00 3.01
5179 5893 1.361668 CCAGGATGTGCGAAACTCGG 61.362 60.000 0.00 0.00 40.84 4.63
5180 5894 0.389817 CAGGATGTGCGAAACTCGGA 60.390 55.000 0.00 0.00 40.84 4.55
5181 5895 0.108615 AGGATGTGCGAAACTCGGAG 60.109 55.000 2.83 2.83 41.84 4.63
5182 5896 1.084370 GGATGTGCGAAACTCGGAGG 61.084 60.000 10.23 0.00 41.84 4.30
5183 5897 0.389948 GATGTGCGAAACTCGGAGGT 60.390 55.000 10.23 0.00 41.84 3.85
5184 5898 0.670546 ATGTGCGAAACTCGGAGGTG 60.671 55.000 10.23 0.00 41.84 4.00
5186 5900 3.119096 GCGAAACTCGGAGGTGCC 61.119 66.667 10.23 0.00 40.84 5.01
5187 5901 2.342279 CGAAACTCGGAGGTGCCA 59.658 61.111 10.23 0.00 36.00 4.92
5188 5902 1.079127 CGAAACTCGGAGGTGCCAT 60.079 57.895 10.23 0.00 36.00 4.40
5189 5903 1.084370 CGAAACTCGGAGGTGCCATC 61.084 60.000 10.23 0.00 36.00 3.51
5190 5904 0.250513 GAAACTCGGAGGTGCCATCT 59.749 55.000 10.23 0.00 35.94 2.90
5191 5905 0.250513 AAACTCGGAGGTGCCATCTC 59.749 55.000 10.23 0.00 35.94 2.75
5192 5906 1.617947 AACTCGGAGGTGCCATCTCC 61.618 60.000 14.38 14.38 45.46 3.71
5202 5916 1.701847 GTGCCATCTCCCCATCTACAT 59.298 52.381 0.00 0.00 0.00 2.29
5207 5921 3.586174 CCATCTCCCCATCTACATGACAT 59.414 47.826 0.00 0.00 30.57 3.06
5208 5922 4.565028 CCATCTCCCCATCTACATGACATG 60.565 50.000 14.02 14.02 30.57 3.21
5232 5946 9.709495 ATGATAGCTTAAGCAAAGAATAGAGAG 57.291 33.333 28.39 0.00 45.16 3.20
5233 5947 8.918116 TGATAGCTTAAGCAAAGAATAGAGAGA 58.082 33.333 28.39 0.00 45.16 3.10
5290 6009 4.453177 CTCTCTTCTGAATGAGAGCACA 57.547 45.455 22.23 5.29 46.22 4.57
5291 6010 4.818642 CTCTCTTCTGAATGAGAGCACAA 58.181 43.478 22.23 1.23 46.22 3.33
5292 6011 5.417754 TCTCTTCTGAATGAGAGCACAAT 57.582 39.130 12.49 0.00 34.77 2.71
5294 6013 5.046807 TCTCTTCTGAATGAGAGCACAATGA 60.047 40.000 12.49 0.00 34.77 2.57
5295 6014 5.554070 TCTTCTGAATGAGAGCACAATGAA 58.446 37.500 0.00 0.00 30.18 2.57
5296 6015 6.178324 TCTTCTGAATGAGAGCACAATGAAT 58.822 36.000 0.00 0.00 30.18 2.57
5297 6016 7.333323 TCTTCTGAATGAGAGCACAATGAATA 58.667 34.615 0.00 0.00 30.18 1.75
5298 6017 6.915544 TCTGAATGAGAGCACAATGAATAC 57.084 37.500 0.00 0.00 0.00 1.89
5303 6022 7.391275 TGAATGAGAGCACAATGAATACAAAGA 59.609 33.333 0.00 0.00 0.00 2.52
5304 6023 7.876936 ATGAGAGCACAATGAATACAAAGAT 57.123 32.000 0.00 0.00 0.00 2.40
5305 6024 7.692460 TGAGAGCACAATGAATACAAAGATT 57.308 32.000 0.00 0.00 0.00 2.40
5306 6025 8.791327 TGAGAGCACAATGAATACAAAGATTA 57.209 30.769 0.00 0.00 0.00 1.75
5307 6026 8.886719 TGAGAGCACAATGAATACAAAGATTAG 58.113 33.333 0.00 0.00 0.00 1.73
5308 6027 9.102757 GAGAGCACAATGAATACAAAGATTAGA 57.897 33.333 0.00 0.00 0.00 2.10
5325 6044 0.673985 AGAGCACGCTGTGACACTTA 59.326 50.000 7.20 0.00 35.23 2.24
5340 6059 5.940470 GTGACACTTATCAAAATCTCACCCT 59.060 40.000 0.00 0.00 0.00 4.34
5354 6073 1.536662 ACCCTCGTTTCTGGCCTCT 60.537 57.895 3.32 0.00 0.00 3.69
5355 6074 1.078848 CCCTCGTTTCTGGCCTCTG 60.079 63.158 3.32 0.00 0.00 3.35
5356 6075 1.544825 CCCTCGTTTCTGGCCTCTGA 61.545 60.000 3.32 0.00 0.00 3.27
5360 6079 3.077359 CTCGTTTCTGGCCTCTGAAAAT 58.923 45.455 16.51 0.00 40.69 1.82
5361 6080 2.813754 TCGTTTCTGGCCTCTGAAAATG 59.186 45.455 16.51 13.25 40.69 2.32
5362 6081 2.813754 CGTTTCTGGCCTCTGAAAATGA 59.186 45.455 16.51 0.00 40.69 2.57
5364 6083 2.119801 TCTGGCCTCTGAAAATGAGC 57.880 50.000 3.32 0.00 0.00 4.26
5365 6084 0.731417 CTGGCCTCTGAAAATGAGCG 59.269 55.000 3.32 0.00 0.00 5.03
5366 6085 0.036732 TGGCCTCTGAAAATGAGCGT 59.963 50.000 3.32 0.00 0.00 5.07
5367 6086 1.277842 TGGCCTCTGAAAATGAGCGTA 59.722 47.619 3.32 0.00 0.00 4.42
5368 6087 2.092968 TGGCCTCTGAAAATGAGCGTAT 60.093 45.455 3.32 0.00 0.00 3.06
5369 6088 2.545946 GGCCTCTGAAAATGAGCGTATC 59.454 50.000 0.00 0.00 0.00 2.24
5370 6089 2.545946 GCCTCTGAAAATGAGCGTATCC 59.454 50.000 0.00 0.00 0.00 2.59
5371 6090 2.797156 CCTCTGAAAATGAGCGTATCCG 59.203 50.000 0.00 0.00 37.07 4.18
5372 6091 3.490933 CCTCTGAAAATGAGCGTATCCGA 60.491 47.826 0.00 0.00 35.63 4.55
5373 6092 4.302455 CTCTGAAAATGAGCGTATCCGAT 58.698 43.478 0.00 0.00 35.63 4.18
5379 6098 3.039988 AGCGTATCCGATCACCCG 58.960 61.111 0.00 0.00 35.63 5.28
5380 6099 1.826921 AGCGTATCCGATCACCCGT 60.827 57.895 0.00 0.00 35.63 5.28
5381 6100 1.066918 GCGTATCCGATCACCCGTT 59.933 57.895 0.00 0.00 35.63 4.44
5382 6101 0.529119 GCGTATCCGATCACCCGTTT 60.529 55.000 0.00 0.00 35.63 3.60
5383 6102 1.484356 CGTATCCGATCACCCGTTTC 58.516 55.000 0.00 0.00 35.63 2.78
5384 6103 1.066605 CGTATCCGATCACCCGTTTCT 59.933 52.381 0.00 0.00 35.63 2.52
5385 6104 2.470821 GTATCCGATCACCCGTTTCTG 58.529 52.381 0.00 0.00 0.00 3.02
5386 6105 0.902531 ATCCGATCACCCGTTTCTGT 59.097 50.000 0.00 0.00 0.00 3.41
5387 6106 0.682852 TCCGATCACCCGTTTCTGTT 59.317 50.000 0.00 0.00 0.00 3.16
5388 6107 1.071071 TCCGATCACCCGTTTCTGTTT 59.929 47.619 0.00 0.00 0.00 2.83
5389 6108 1.877443 CCGATCACCCGTTTCTGTTTT 59.123 47.619 0.00 0.00 0.00 2.43
5390 6109 2.292292 CCGATCACCCGTTTCTGTTTTT 59.708 45.455 0.00 0.00 0.00 1.94
5391 6110 3.551551 CGATCACCCGTTTCTGTTTTTC 58.448 45.455 0.00 0.00 0.00 2.29
5392 6111 3.250040 CGATCACCCGTTTCTGTTTTTCT 59.750 43.478 0.00 0.00 0.00 2.52
5393 6112 4.261031 CGATCACCCGTTTCTGTTTTTCTT 60.261 41.667 0.00 0.00 0.00 2.52
5394 6113 5.588240 GATCACCCGTTTCTGTTTTTCTTT 58.412 37.500 0.00 0.00 0.00 2.52
5395 6114 4.989044 TCACCCGTTTCTGTTTTTCTTTC 58.011 39.130 0.00 0.00 0.00 2.62
5396 6115 4.109766 CACCCGTTTCTGTTTTTCTTTCC 58.890 43.478 0.00 0.00 0.00 3.13
5397 6116 4.021229 ACCCGTTTCTGTTTTTCTTTCCT 58.979 39.130 0.00 0.00 0.00 3.36
5398 6117 4.464951 ACCCGTTTCTGTTTTTCTTTCCTT 59.535 37.500 0.00 0.00 0.00 3.36
5399 6118 5.046878 ACCCGTTTCTGTTTTTCTTTCCTTT 60.047 36.000 0.00 0.00 0.00 3.11
5400 6119 5.872617 CCCGTTTCTGTTTTTCTTTCCTTTT 59.127 36.000 0.00 0.00 0.00 2.27
5401 6120 6.370442 CCCGTTTCTGTTTTTCTTTCCTTTTT 59.630 34.615 0.00 0.00 0.00 1.94
5425 6144 2.351706 AACAGAGGCAAAAACCCGTA 57.648 45.000 0.00 0.00 0.00 4.02
5441 6160 3.126831 CCCGTATCTGTTCTGAATGAGC 58.873 50.000 0.00 0.00 0.00 4.26
5461 6180 2.089349 GCTCGCCGTGACACTTCTC 61.089 63.158 3.68 0.00 0.00 2.87
5470 6189 3.552890 CCGTGACACTTCTCACAATCTCA 60.553 47.826 3.68 0.00 40.67 3.27
5475 6194 1.276421 ACTTCTCACAATCTCACCCCG 59.724 52.381 0.00 0.00 0.00 5.73
5484 6203 2.198304 ATCTCACCCCGTTTCTGGCC 62.198 60.000 0.00 0.00 0.00 5.36
5492 6211 2.954611 GTTTCTGGCCGCTTGGTC 59.045 61.111 0.00 0.00 38.10 4.02
5504 6223 1.654954 GCTTGGTCTGATGCCAGCAG 61.655 60.000 2.92 2.92 40.20 4.24
5540 6678 4.729227 AGCAGGCTACTTTTCTAGAGAC 57.271 45.455 0.00 0.00 0.00 3.36
5552 6690 7.001073 ACTTTTCTAGAGACTGGCAAGAAAAT 58.999 34.615 17.90 9.39 42.24 1.82
5560 6698 2.488153 ACTGGCAAGAAAATTCGGTAGC 59.512 45.455 0.00 0.00 0.00 3.58
5563 6701 2.230266 GGCAAGAAAATTCGGTAGCCAA 59.770 45.455 12.78 0.00 40.50 4.52
5564 6702 3.305744 GGCAAGAAAATTCGGTAGCCAAA 60.306 43.478 12.78 0.00 40.50 3.28
5569 6707 7.519809 GCAAGAAAATTCGGTAGCCAAATTTTT 60.520 33.333 18.72 5.51 40.69 1.94
5570 6708 8.983724 CAAGAAAATTCGGTAGCCAAATTTTTA 58.016 29.630 18.72 0.00 40.69 1.52
5571 6709 8.757164 AGAAAATTCGGTAGCCAAATTTTTAG 57.243 30.769 18.72 0.00 40.69 1.85
5572 6710 8.581578 AGAAAATTCGGTAGCCAAATTTTTAGA 58.418 29.630 18.72 0.00 40.69 2.10
5573 6711 8.757164 AAAATTCGGTAGCCAAATTTTTAGAG 57.243 30.769 14.77 0.00 38.69 2.43
5624 6773 2.839486 TCGAACCAAGCAGTCTCATT 57.161 45.000 0.00 0.00 0.00 2.57
5644 6795 6.635755 TCATTGTGTATGGAAACGAGTCATA 58.364 36.000 0.00 0.00 34.85 2.15
5646 6797 8.417884 TCATTGTGTATGGAAACGAGTCATATA 58.582 33.333 0.00 0.00 34.85 0.86
5714 6892 0.536724 ACATCTCGGTACATGCAGCA 59.463 50.000 0.00 0.00 0.00 4.41
5769 6949 3.289834 GTCGGGCGGGTATAGCGA 61.290 66.667 0.00 0.00 35.00 4.93
5778 6958 2.828877 CGGGTATAGCGAAAATGGTCA 58.171 47.619 0.00 0.00 0.00 4.02
5842 7030 3.051210 CTCACACGAGCAGGGTCA 58.949 61.111 0.00 0.00 31.20 4.02
5843 7031 1.593787 CTCACACGAGCAGGGTCAT 59.406 57.895 0.00 0.00 31.20 3.06
5844 7032 0.459237 CTCACACGAGCAGGGTCATC 60.459 60.000 0.00 0.00 31.20 2.92
5845 7033 1.184970 TCACACGAGCAGGGTCATCA 61.185 55.000 0.00 0.00 31.20 3.07
5846 7034 1.016130 CACACGAGCAGGGTCATCAC 61.016 60.000 0.00 0.00 31.20 3.06
5847 7035 1.293179 CACGAGCAGGGTCATCACA 59.707 57.895 0.00 0.00 0.00 3.58
5848 7036 0.320683 CACGAGCAGGGTCATCACAA 60.321 55.000 0.00 0.00 0.00 3.33
5885 7073 0.251386 AGGAGGACGTCTGCTGAAGA 60.251 55.000 16.46 0.00 42.82 2.87
5899 7087 2.852075 AAGACGGGAAGGTGGCCA 60.852 61.111 0.00 0.00 0.00 5.36
5976 7164 2.747460 GCTGCGGCTGGTGATTCA 60.747 61.111 11.21 0.00 35.22 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.947115 GTTTACTGTAAATTGATGGTTCTAGCT 58.053 33.333 15.36 0.00 0.00 3.32
1 2 8.726988 TGTTTACTGTAAATTGATGGTTCTAGC 58.273 33.333 15.36 0.00 0.00 3.42
35 36 7.703197 TCGTTTAACATGAGATTGCGAGTATTA 59.297 33.333 0.00 0.00 0.00 0.98
39 40 4.242475 TCGTTTAACATGAGATTGCGAGT 58.758 39.130 0.00 0.00 0.00 4.18
83 84 8.421784 AGAATAAAGGTAATGTTCGATAGCTGA 58.578 33.333 0.00 0.00 30.76 4.26
89 90 7.873505 GGAGCTAGAATAAAGGTAATGTTCGAT 59.126 37.037 0.00 0.00 0.00 3.59
116 117 0.822164 TAAGTCTTGACCCTAGGCGC 59.178 55.000 2.05 0.00 0.00 6.53
184 185 8.355169 ACTAGGCAGCATCAAATATAATGTTTG 58.645 33.333 0.00 0.00 37.79 2.93
197 198 6.184068 TGGTTAAATTAACTAGGCAGCATCA 58.816 36.000 14.61 0.00 38.68 3.07
232 233 7.719633 AGCTGACTTTCAGTTAAGAAAACCATA 59.280 33.333 5.14 0.00 45.94 2.74
259 260 7.062957 CCAGGGGTTTATCATAGATTGTTCTT 58.937 38.462 0.00 0.00 33.17 2.52
265 266 6.160459 ACAAGTCCAGGGGTTTATCATAGATT 59.840 38.462 0.00 0.00 0.00 2.40
343 344 7.504924 CCAATTGGTTCAAGTAAACTAGACA 57.495 36.000 16.90 0.00 0.00 3.41
402 411 9.447040 GCAAAGTCTTGGTACTACTTTTAAAAG 57.553 33.333 23.38 23.38 40.52 2.27
411 421 2.685100 AGCGCAAAGTCTTGGTACTAC 58.315 47.619 11.47 0.00 32.76 2.73
458 468 0.040425 AATGCTTGTGGCGTCGAAAC 60.040 50.000 0.00 0.00 45.43 2.78
558 586 0.525761 TGGAAGCTTGTATTTGGCGC 59.474 50.000 2.10 0.00 0.00 6.53
571 631 1.680314 CAAAGGGCCTCCTGGAAGC 60.680 63.158 6.46 8.84 44.07 3.86
632 692 5.413213 CGGTGGAATATCGAGTTATCTCTCT 59.587 44.000 0.00 0.00 38.45 3.10
642 702 1.004918 GGGGCGGTGGAATATCGAG 60.005 63.158 0.00 0.00 0.00 4.04
682 754 0.801067 CGGCGTCGTTTTCTAGGAGG 60.801 60.000 0.00 0.00 0.00 4.30
683 755 2.650163 CGGCGTCGTTTTCTAGGAG 58.350 57.895 0.00 0.00 0.00 3.69
684 756 4.874534 CGGCGTCGTTTTCTAGGA 57.125 55.556 0.00 0.00 0.00 2.94
829 901 3.090532 AGATTGGGGCGGAGGGAC 61.091 66.667 0.00 0.00 0.00 4.46
885 961 2.574018 CGAGATATGGCCCGGAGCA 61.574 63.158 0.73 0.00 46.50 4.26
893 969 1.799519 CGAGCGAGCGAGATATGGC 60.800 63.158 0.00 0.00 0.00 4.40
896 972 2.563942 GGCGAGCGAGCGAGATAT 59.436 61.111 1.41 0.00 38.18 1.63
918 998 1.512735 GGGCTCTACTTTCTGGGGAT 58.487 55.000 0.00 0.00 0.00 3.85
924 1004 0.976590 GGGGTCGGGCTCTACTTTCT 60.977 60.000 0.00 0.00 0.00 2.52
925 1005 0.976590 AGGGGTCGGGCTCTACTTTC 60.977 60.000 0.00 0.00 0.00 2.62
929 1010 0.327259 AAAAAGGGGTCGGGCTCTAC 59.673 55.000 0.00 0.00 0.00 2.59
930 1011 2.781631 AAAAAGGGGTCGGGCTCTA 58.218 52.632 0.00 0.00 0.00 2.43
931 1012 3.589139 AAAAAGGGGTCGGGCTCT 58.411 55.556 0.00 0.00 0.00 4.09
958 1039 3.790437 GCAGGAGGCTGGCTGCTA 61.790 66.667 23.98 0.00 42.39 3.49
1197 1301 5.968528 AACGGCATCTACATAAACCAAAA 57.031 34.783 0.00 0.00 0.00 2.44
1216 1326 1.207329 CCTCCAGGAACCTCCTTAACG 59.793 57.143 0.00 0.00 46.91 3.18
1218 1328 2.735259 ACCTCCAGGAACCTCCTTAA 57.265 50.000 0.00 0.00 46.91 1.85
1323 1433 1.068281 GAGCTTCTGATCTCGCATCCA 59.932 52.381 0.00 0.00 0.00 3.41
1362 1472 1.898574 CCGCAACCCAGCTTCTGTT 60.899 57.895 0.00 0.00 0.00 3.16
1533 1643 2.435586 CTGCTTCTGCCAGGGACG 60.436 66.667 0.00 0.00 38.71 4.79
1534 1644 2.749441 GCTGCTTCTGCCAGGGAC 60.749 66.667 0.00 0.00 38.71 4.46
1539 1649 0.327259 AGAATCAGCTGCTTCTGCCA 59.673 50.000 27.42 0.82 38.71 4.92
1540 1650 1.015868 GAGAATCAGCTGCTTCTGCC 58.984 55.000 31.67 17.60 31.44 4.85
1638 1760 1.303615 TCCCCTCTGGACTCGACTC 59.696 63.158 0.00 0.00 38.61 3.36
1659 1781 3.719144 GGCCGTTTTGACCGTCGG 61.719 66.667 10.48 10.48 44.86 4.79
1748 1879 1.454111 TCGTGGAGGCCTCTAGAGC 60.454 63.158 31.36 15.41 0.00 4.09
1749 1880 1.440938 CGTCGTGGAGGCCTCTAGAG 61.441 65.000 31.36 21.56 0.00 2.43
1750 1881 1.451567 CGTCGTGGAGGCCTCTAGA 60.452 63.158 31.36 23.33 0.00 2.43
1751 1882 3.111939 CGTCGTGGAGGCCTCTAG 58.888 66.667 31.36 21.57 0.00 2.43
1752 1883 3.138798 GCGTCGTGGAGGCCTCTA 61.139 66.667 31.36 24.44 37.46 2.43
1754 1885 4.803426 CTGCGTCGTGGAGGCCTC 62.803 72.222 25.59 25.59 41.92 4.70
2021 2178 7.817962 TCAAAAGGCAGATTAACAGAGTAGTAC 59.182 37.037 0.00 0.00 0.00 2.73
2083 2241 4.021104 TGTTCCACAGAGTAAGATGGACTG 60.021 45.833 0.00 0.00 40.96 3.51
2092 2250 4.525487 ACCGTCTAATGTTCCACAGAGTAA 59.475 41.667 0.00 0.00 0.00 2.24
2141 2333 6.037610 CACCACATAAAGCAGATTCTTCTACC 59.962 42.308 0.00 0.00 0.00 3.18
2190 2382 6.767423 GCATATCAAAATAGCCCAAACCAAAT 59.233 34.615 0.00 0.00 0.00 2.32
2192 2384 5.424895 AGCATATCAAAATAGCCCAAACCAA 59.575 36.000 0.00 0.00 0.00 3.67
2194 2386 5.068987 TGAGCATATCAAAATAGCCCAAACC 59.931 40.000 0.00 0.00 34.02 3.27
2195 2387 6.147864 TGAGCATATCAAAATAGCCCAAAC 57.852 37.500 0.00 0.00 34.02 2.93
2196 2388 6.982160 ATGAGCATATCAAAATAGCCCAAA 57.018 33.333 0.00 0.00 42.53 3.28
2246 2748 1.968017 CGCACAAGCATGGTCCACT 60.968 57.895 0.00 0.00 42.27 4.00
2247 2749 1.514678 TTCGCACAAGCATGGTCCAC 61.515 55.000 0.00 0.00 42.27 4.02
2248 2750 0.608856 ATTCGCACAAGCATGGTCCA 60.609 50.000 0.00 0.00 42.27 4.02
2324 2826 3.391506 ACAGAAAAAGGAAGCATTGCC 57.608 42.857 4.70 0.00 36.97 4.52
2384 2891 8.839310 AATGAGCATAGCCAAATAGTAAGTAG 57.161 34.615 0.00 0.00 0.00 2.57
2472 2997 5.129650 AGGACCTAATTTCCTCAGTTAGCTC 59.870 44.000 0.00 0.00 39.47 4.09
2500 3025 0.176449 GGGGTGCATCCTTTTCATGC 59.824 55.000 17.44 0.00 45.92 4.06
2535 3060 2.821378 CCTTGAACAATCCATGTGCTGA 59.179 45.455 0.00 0.00 42.99 4.26
2591 3148 4.274950 GCACAAGCTAAGGTTTACAGACAA 59.725 41.667 0.00 0.00 37.91 3.18
2629 3186 2.100749 CACAGGTACACATCATCGCCTA 59.899 50.000 0.00 0.00 0.00 3.93
2630 3187 1.134699 CACAGGTACACATCATCGCCT 60.135 52.381 0.00 0.00 0.00 5.52
2631 3188 1.290203 CACAGGTACACATCATCGCC 58.710 55.000 0.00 0.00 0.00 5.54
2632 3189 2.010145 ACACAGGTACACATCATCGC 57.990 50.000 0.00 0.00 0.00 4.58
2633 3190 4.142902 GGAAAACACAGGTACACATCATCG 60.143 45.833 0.00 0.00 0.00 3.84
2634 3191 4.156008 GGGAAAACACAGGTACACATCATC 59.844 45.833 0.00 0.00 0.00 2.92
2635 3192 4.079253 GGGAAAACACAGGTACACATCAT 58.921 43.478 0.00 0.00 0.00 2.45
2640 3197 1.612676 GGGGGAAAACACAGGTACAC 58.387 55.000 0.00 0.00 0.00 2.90
2684 3270 3.190738 TTGTTCTCCCTGGCCACCG 62.191 63.158 0.00 0.00 0.00 4.94
2709 3295 3.949113 ACCTATCAGAACTCTTCGTCTCC 59.051 47.826 0.00 0.00 34.02 3.71
2755 3341 3.978687 ACTCAGCTTATGGTGCGTATAC 58.021 45.455 2.00 0.00 37.78 1.47
2760 3346 2.989840 GCTATACTCAGCTTATGGTGCG 59.010 50.000 3.05 0.00 41.10 5.34
2794 3380 5.109500 TGAATAACCCTATGCATGTGTGA 57.891 39.130 10.16 0.00 0.00 3.58
2805 3391 5.491078 ACAAGGGACATCTTGAATAACCCTA 59.509 40.000 10.99 0.00 44.98 3.53
2839 3425 4.918588 TCAAGGGTTAGAAAGGCTAAAGG 58.081 43.478 0.00 0.00 40.60 3.11
2868 3454 7.012894 TGTCAAAACACGAATAAACCATCTTCT 59.987 33.333 0.00 0.00 0.00 2.85
2873 3459 5.633182 GCATGTCAAAACACGAATAAACCAT 59.367 36.000 0.00 0.00 38.48 3.55
2943 3529 3.745803 GCTGCACCTGAAGCCAGC 61.746 66.667 0.00 0.00 40.93 4.85
3151 3737 9.883142 CTTGTTGAAATCTCTAGAAAGACCTAT 57.117 33.333 0.00 0.00 0.00 2.57
3152 3738 8.871125 ACTTGTTGAAATCTCTAGAAAGACCTA 58.129 33.333 0.00 0.00 0.00 3.08
3153 3739 7.659390 CACTTGTTGAAATCTCTAGAAAGACCT 59.341 37.037 0.00 0.00 0.00 3.85
3154 3740 7.657761 TCACTTGTTGAAATCTCTAGAAAGACC 59.342 37.037 0.00 0.00 0.00 3.85
3155 3741 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3156 3742 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3157 3743 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3158 3744 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3159 3745 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3160 3746 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3161 3747 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3162 3748 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3163 3749 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3164 3750 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3165 3751 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3166 3752 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3167 3753 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3168 3754 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3169 3755 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3170 3756 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3171 3757 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3172 3758 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3173 3759 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3174 3760 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3175 3761 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3176 3762 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3177 3763 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3178 3764 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3179 3765 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3180 3766 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3181 3767 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3182 3768 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3183 3769 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3184 3770 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3185 3771 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3186 3772 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3187 3773 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3188 3774 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3189 3775 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3190 3776 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3246 3832 9.579932 AGTCTTTTTAGAGATTTCAAATGGACT 57.420 29.630 0.00 0.00 0.00 3.85
3264 3850 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3265 3851 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
3266 3852 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
3267 3853 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
3268 3854 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
3269 3855 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
3270 3856 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
3271 3857 8.858094 ACTACTTCCTCCGTTCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3272 3858 8.773033 ACTACTTCCTCCGTTCCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
3273 3859 8.773033 AACTACTTCCTCCGTTCCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
3274 3860 7.672122 AACTACTTCCTCCGTTCCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
3275 3861 8.593945 TTAACTACTTCCTCCGTTCCTAAATA 57.406 34.615 0.00 0.00 0.00 1.40
3276 3862 7.486407 TTAACTACTTCCTCCGTTCCTAAAT 57.514 36.000 0.00 0.00 0.00 1.40
3277 3863 6.916360 TTAACTACTTCCTCCGTTCCTAAA 57.084 37.500 0.00 0.00 0.00 1.85
3278 3864 6.916360 TTTAACTACTTCCTCCGTTCCTAA 57.084 37.500 0.00 0.00 0.00 2.69
3279 3865 6.438425 ACATTTAACTACTTCCTCCGTTCCTA 59.562 38.462 0.00 0.00 0.00 2.94
3280 3866 5.247792 ACATTTAACTACTTCCTCCGTTCCT 59.752 40.000 0.00 0.00 0.00 3.36
3281 3867 5.485620 ACATTTAACTACTTCCTCCGTTCC 58.514 41.667 0.00 0.00 0.00 3.62
3282 3868 8.538409 TTTACATTTAACTACTTCCTCCGTTC 57.462 34.615 0.00 0.00 0.00 3.95
3283 3869 8.370182 TCTTTACATTTAACTACTTCCTCCGTT 58.630 33.333 0.00 0.00 0.00 4.44
3284 3870 7.899973 TCTTTACATTTAACTACTTCCTCCGT 58.100 34.615 0.00 0.00 0.00 4.69
3285 3871 8.654215 GTTCTTTACATTTAACTACTTCCTCCG 58.346 37.037 0.00 0.00 0.00 4.63
3286 3872 8.654215 CGTTCTTTACATTTAACTACTTCCTCC 58.346 37.037 0.00 0.00 0.00 4.30
3287 3873 8.654215 CCGTTCTTTACATTTAACTACTTCCTC 58.346 37.037 0.00 0.00 0.00 3.71
3288 3874 8.370182 TCCGTTCTTTACATTTAACTACTTCCT 58.630 33.333 0.00 0.00 0.00 3.36
3289 3875 8.538409 TCCGTTCTTTACATTTAACTACTTCC 57.462 34.615 0.00 0.00 0.00 3.46
3291 3877 8.501580 GCTTCCGTTCTTTACATTTAACTACTT 58.498 33.333 0.00 0.00 0.00 2.24
3292 3878 7.658575 TGCTTCCGTTCTTTACATTTAACTACT 59.341 33.333 0.00 0.00 0.00 2.57
3293 3879 7.743400 GTGCTTCCGTTCTTTACATTTAACTAC 59.257 37.037 0.00 0.00 0.00 2.73
3315 3901 6.552445 AGAAGGATCTATGTAACAAGTGCT 57.448 37.500 0.00 0.00 32.88 4.40
3370 3956 8.028938 ACCAAACATGAGTTAATTGAGTAATGC 58.971 33.333 0.00 0.00 36.84 3.56
3392 3978 6.600032 TCTTAACAAAGAGTTGCTTACACCAA 59.400 34.615 0.00 0.00 41.50 3.67
3397 3984 9.387123 CTGAAATCTTAACAAAGAGTTGCTTAC 57.613 33.333 5.64 0.00 41.50 2.34
3422 4009 9.790344 AAAAGCAAATATATGAGTCTAGATGCT 57.210 29.630 0.00 0.00 41.73 3.79
3439 4046 9.768662 ACAAATATGAAGTCAAGAAAAGCAAAT 57.231 25.926 0.00 0.00 0.00 2.32
3599 4210 5.928839 CACATGGAGAGTAAATATTCCTCCG 59.071 44.000 15.39 8.91 44.72 4.63
3702 4320 7.445707 TGTGTGCACCTGTATTTTTAACAGATA 59.554 33.333 15.69 0.00 45.89 1.98
3715 4334 1.341913 ACCACCTGTGTGCACCTGTA 61.342 55.000 15.69 0.00 41.35 2.74
3760 4379 2.978018 GCTACACCAAACCAGCCGC 61.978 63.158 0.00 0.00 0.00 6.53
3821 4440 4.361451 AGCAACCGAAATTTAGCTGATG 57.639 40.909 0.00 0.00 0.00 3.07
3822 4441 5.391312 AAAGCAACCGAAATTTAGCTGAT 57.609 34.783 0.00 0.00 31.88 2.90
3825 4444 6.759497 AGATAAAGCAACCGAAATTTAGCT 57.241 33.333 0.00 0.00 31.10 3.32
3830 4449 4.083003 TCGCAAGATAAAGCAACCGAAATT 60.083 37.500 0.00 0.00 45.01 1.82
3832 4451 2.809119 TCGCAAGATAAAGCAACCGAAA 59.191 40.909 0.00 0.00 45.01 3.46
3834 4453 2.087501 TCGCAAGATAAAGCAACCGA 57.912 45.000 0.00 0.00 45.01 4.69
3851 4470 1.396996 CCCAGGAATTAAACGCACTCG 59.603 52.381 0.00 0.00 42.43 4.18
3858 4477 7.718525 TCTTTTTGTACACCCAGGAATTAAAC 58.281 34.615 0.00 0.00 0.00 2.01
3859 4478 7.899648 TCTTTTTGTACACCCAGGAATTAAA 57.100 32.000 0.00 0.00 0.00 1.52
3861 4480 7.562088 AGTTTCTTTTTGTACACCCAGGAATTA 59.438 33.333 0.00 0.00 0.00 1.40
3862 4481 6.382859 AGTTTCTTTTTGTACACCCAGGAATT 59.617 34.615 0.00 0.00 0.00 2.17
3863 4482 5.897250 AGTTTCTTTTTGTACACCCAGGAAT 59.103 36.000 0.00 0.00 0.00 3.01
3864 4483 5.265989 AGTTTCTTTTTGTACACCCAGGAA 58.734 37.500 0.00 0.00 0.00 3.36
3865 4484 4.862371 AGTTTCTTTTTGTACACCCAGGA 58.138 39.130 0.00 0.00 0.00 3.86
3866 4485 4.037565 GGAGTTTCTTTTTGTACACCCAGG 59.962 45.833 0.00 0.00 0.00 4.45
3867 4486 4.887655 AGGAGTTTCTTTTTGTACACCCAG 59.112 41.667 0.00 0.00 0.00 4.45
3868 4487 4.642885 CAGGAGTTTCTTTTTGTACACCCA 59.357 41.667 0.00 0.00 0.00 4.51
3869 4488 4.037565 CCAGGAGTTTCTTTTTGTACACCC 59.962 45.833 0.00 0.00 0.00 4.61
3870 4489 4.037565 CCCAGGAGTTTCTTTTTGTACACC 59.962 45.833 0.00 0.00 0.00 4.16
3871 4490 4.643334 ACCCAGGAGTTTCTTTTTGTACAC 59.357 41.667 0.00 0.00 0.00 2.90
3872 4491 4.642885 CACCCAGGAGTTTCTTTTTGTACA 59.357 41.667 0.00 0.00 0.00 2.90
3873 4492 4.643334 ACACCCAGGAGTTTCTTTTTGTAC 59.357 41.667 0.00 0.00 0.00 2.90
3874 4493 4.862371 ACACCCAGGAGTTTCTTTTTGTA 58.138 39.130 0.00 0.00 0.00 2.41
3875 4494 3.708451 ACACCCAGGAGTTTCTTTTTGT 58.292 40.909 0.00 0.00 0.00 2.83
3876 4495 4.642885 TGTACACCCAGGAGTTTCTTTTTG 59.357 41.667 0.00 0.00 0.00 2.44
3877 4496 4.862371 TGTACACCCAGGAGTTTCTTTTT 58.138 39.130 0.00 0.00 0.00 1.94
3878 4497 4.513406 TGTACACCCAGGAGTTTCTTTT 57.487 40.909 0.00 0.00 0.00 2.27
3879 4498 4.513406 TTGTACACCCAGGAGTTTCTTT 57.487 40.909 0.00 0.00 0.00 2.52
3880 4499 4.513406 TTTGTACACCCAGGAGTTTCTT 57.487 40.909 0.00 0.00 0.00 2.52
3881 4500 4.724279 ATTTGTACACCCAGGAGTTTCT 57.276 40.909 0.00 0.00 0.00 2.52
3882 4501 5.278808 GGAAATTTGTACACCCAGGAGTTTC 60.279 44.000 0.00 0.00 0.00 2.78
3883 4502 4.587262 GGAAATTTGTACACCCAGGAGTTT 59.413 41.667 0.00 0.00 0.00 2.66
3899 4518 6.544928 ACACACTTTCTGAAAGGGAAATTT 57.455 33.333 32.74 12.16 44.81 1.82
3906 4525 4.878397 AGAGTGAACACACTTTCTGAAAGG 59.122 41.667 28.21 20.40 43.70 3.11
3911 4530 5.801350 TCAAAGAGTGAACACACTTTCTG 57.199 39.130 20.83 14.73 44.80 3.02
3912 4531 6.431234 ACTTTCAAAGAGTGAACACACTTTCT 59.569 34.615 20.83 7.67 44.80 2.52
3913 4532 6.524586 CACTTTCAAAGAGTGAACACACTTTC 59.475 38.462 20.83 5.83 44.80 2.62
3915 4534 5.473504 ACACTTTCAAAGAGTGAACACACTT 59.526 36.000 3.49 10.75 46.09 3.16
3916 4535 5.003804 ACACTTTCAAAGAGTGAACACACT 58.996 37.500 3.49 2.45 46.09 3.55
3917 4536 5.296813 ACACTTTCAAAGAGTGAACACAC 57.703 39.130 3.49 1.16 46.09 3.82
3918 4537 5.957842 AACACTTTCAAAGAGTGAACACA 57.042 34.783 3.49 0.00 46.09 3.72
3919 4538 6.149633 ACAAACACTTTCAAAGAGTGAACAC 58.850 36.000 3.49 0.00 46.09 3.32
3940 4570 6.464222 ACTGATGTTAACTGCTAGCTAACAA 58.536 36.000 23.78 12.81 39.37 2.83
3971 4601 9.273016 GGCAAATAAATTAGCTACTGACATCTA 57.727 33.333 0.00 0.00 0.00 1.98
3980 4610 9.626045 GGTAATCATGGCAAATAAATTAGCTAC 57.374 33.333 0.00 0.00 0.00 3.58
3983 4613 9.196552 GAAGGTAATCATGGCAAATAAATTAGC 57.803 33.333 0.00 1.96 0.00 3.09
4016 4646 7.612633 AGAACATAAACCCATATTTTGTACGGT 59.387 33.333 0.00 0.00 0.00 4.83
4017 4647 7.992008 AGAACATAAACCCATATTTTGTACGG 58.008 34.615 0.00 0.00 0.00 4.02
4018 4648 8.670135 TGAGAACATAAACCCATATTTTGTACG 58.330 33.333 0.00 0.00 0.00 3.67
4021 4651 9.253832 TGATGAGAACATAAACCCATATTTTGT 57.746 29.630 0.00 0.00 36.82 2.83
4026 4656 9.950496 GAGTATGATGAGAACATAAACCCATAT 57.050 33.333 0.00 0.00 36.82 1.78
4027 4657 9.159254 AGAGTATGATGAGAACATAAACCCATA 57.841 33.333 0.00 0.00 36.82 2.74
4037 4667 7.559486 AGCATAACAAGAGTATGATGAGAACA 58.441 34.615 0.00 0.00 0.00 3.18
4051 4681 4.022935 CCTGAGTGCAAAAGCATAACAAGA 60.023 41.667 0.00 0.00 0.00 3.02
4054 4684 3.485394 TCCTGAGTGCAAAAGCATAACA 58.515 40.909 0.00 0.00 0.00 2.41
4055 4685 4.503741 TTCCTGAGTGCAAAAGCATAAC 57.496 40.909 0.00 0.00 0.00 1.89
4057 4687 4.334552 TGATTCCTGAGTGCAAAAGCATA 58.665 39.130 0.00 0.00 0.00 3.14
4058 4688 3.159472 TGATTCCTGAGTGCAAAAGCAT 58.841 40.909 0.00 0.00 0.00 3.79
4060 4690 3.648339 TTGATTCCTGAGTGCAAAAGC 57.352 42.857 0.00 0.00 0.00 3.51
4067 4731 1.019673 CCCGCATTGATTCCTGAGTG 58.980 55.000 0.00 0.00 0.00 3.51
4068 4733 0.107017 CCCCGCATTGATTCCTGAGT 60.107 55.000 0.00 0.00 0.00 3.41
4131 4796 1.452108 GGTGCCCCTTGATTCTCCG 60.452 63.158 0.00 0.00 0.00 4.63
4145 4810 1.450312 CGGTTCTCATCCCTGGTGC 60.450 63.158 0.00 0.00 0.00 5.01
4184 4849 1.227853 GGGACCGTGCTTCAACTGT 60.228 57.895 0.00 0.00 0.00 3.55
4207 4872 5.121454 GTGAGCAACCAAGATAGTTGAAGAG 59.879 44.000 7.77 0.00 46.03 2.85
4217 4882 3.508793 CCATCAAAGTGAGCAACCAAGAT 59.491 43.478 0.00 0.00 0.00 2.40
4289 4956 0.101759 CAGCAAGTGGTATGCATGCC 59.898 55.000 25.45 25.45 46.22 4.40
4290 4957 0.813184 ACAGCAAGTGGTATGCATGC 59.187 50.000 11.82 11.82 46.22 4.06
4291 4958 3.439825 TGTTACAGCAAGTGGTATGCATG 59.560 43.478 10.16 0.00 46.22 4.06
4293 4960 3.133141 TGTTACAGCAAGTGGTATGCA 57.867 42.857 0.00 0.00 46.22 3.96
4294 4961 4.701956 AATGTTACAGCAAGTGGTATGC 57.298 40.909 0.00 0.00 44.15 3.14
4295 4962 6.500684 AGAAATGTTACAGCAAGTGGTATG 57.499 37.500 0.00 0.00 0.00 2.39
4296 4963 6.071952 CCAAGAAATGTTACAGCAAGTGGTAT 60.072 38.462 0.00 0.00 0.00 2.73
4305 4976 4.584327 AACCACCAAGAAATGTTACAGC 57.416 40.909 0.00 0.00 0.00 4.40
4310 4981 8.012957 TGTACAATTAACCACCAAGAAATGTT 57.987 30.769 0.00 0.00 0.00 2.71
4360 5031 3.181447 ACATGAAGGACCTGCCATATCAG 60.181 47.826 0.00 1.70 40.02 2.90
4401 5072 4.574828 CCATTTCTTATCACCAGTAACCCG 59.425 45.833 0.00 0.00 0.00 5.28
4404 5075 7.390718 ACTTGTCCATTTCTTATCACCAGTAAC 59.609 37.037 0.00 0.00 0.00 2.50
4482 5153 2.006888 GAAGGATCGACGCCATTTTCA 58.993 47.619 8.68 0.00 0.00 2.69
4491 5162 2.947852 ACAAGTCTTGAAGGATCGACG 58.052 47.619 19.53 0.00 0.00 5.12
4494 5165 4.177026 CCTGTACAAGTCTTGAAGGATCG 58.823 47.826 19.53 1.30 33.89 3.69
4526 5197 0.727398 GGATAGTGGCGACAACAAGC 59.273 55.000 0.00 0.00 46.06 4.01
4533 5204 5.197682 ACTAATAACAGGATAGTGGCGAC 57.802 43.478 0.00 0.00 0.00 5.19
4534 5205 5.864418 AACTAATAACAGGATAGTGGCGA 57.136 39.130 0.00 0.00 30.61 5.54
4535 5206 6.281405 AGAAACTAATAACAGGATAGTGGCG 58.719 40.000 0.00 0.00 30.61 5.69
4536 5207 7.988028 AGAAGAAACTAATAACAGGATAGTGGC 59.012 37.037 0.00 0.00 30.61 5.01
4537 5208 9.892130 AAGAAGAAACTAATAACAGGATAGTGG 57.108 33.333 0.00 0.00 30.61 4.00
4608 5285 6.796705 TGTAGATCGATAGCGTAATTCTGA 57.203 37.500 0.00 0.00 38.98 3.27
4627 5304 8.204160 TGTTATGATGGTATCACCTTCTTGTAG 58.796 37.037 11.26 0.00 43.01 2.74
4694 5371 4.401022 AGATTTTGAGACAATGTCTGCCA 58.599 39.130 21.81 10.61 43.53 4.92
4700 5377 6.597280 GGCTTCTAGAGATTTTGAGACAATGT 59.403 38.462 0.00 0.00 0.00 2.71
4710 5387 2.738964 GCGGTCGGCTTCTAGAGATTTT 60.739 50.000 0.00 0.00 39.11 1.82
4744 5421 7.414436 TCAAACAAGAAAAGTGATTAGGTTCG 58.586 34.615 0.00 0.00 0.00 3.95
4776 5453 8.999905 TCTGTAGGTTGGTTTATTAGGTTTTT 57.000 30.769 0.00 0.00 0.00 1.94
4777 5454 8.999905 TTCTGTAGGTTGGTTTATTAGGTTTT 57.000 30.769 0.00 0.00 0.00 2.43
4778 5455 8.999905 TTTCTGTAGGTTGGTTTATTAGGTTT 57.000 30.769 0.00 0.00 0.00 3.27
4792 5469 8.934023 TCTTGGTTTCATATTTTCTGTAGGTT 57.066 30.769 0.00 0.00 0.00 3.50
4840 5517 3.733077 GCAATCTCCTGCACAAGTTATGC 60.733 47.826 0.00 0.00 42.17 3.14
4842 5519 3.019564 GGCAATCTCCTGCACAAGTTAT 58.980 45.455 0.00 0.00 44.52 1.89
4863 5540 1.733402 CTCTAGCAGCCAGGAGGTCG 61.733 65.000 0.00 0.00 37.19 4.79
4866 5543 2.820973 GCTCTAGCAGCCAGGAGG 59.179 66.667 0.00 0.00 43.17 4.30
4878 5555 1.003580 CTGCCCACTTCCTTTGCTCTA 59.996 52.381 0.00 0.00 0.00 2.43
4947 5624 1.332889 CCCCGGAGTAACCCAGGTAC 61.333 65.000 0.73 0.00 34.64 3.34
5081 5758 3.181500 GCATTTGAACTCCACCCGAATAC 60.181 47.826 0.00 0.00 0.00 1.89
5089 5766 2.798976 TGCAAGCATTTGAACTCCAC 57.201 45.000 0.00 0.00 36.36 4.02
5114 5791 2.494870 GCAATTGGGTCATTCTTCAGCT 59.505 45.455 7.72 0.00 0.00 4.24
5134 5811 5.443185 TGATTAATGCATGGAAGCTAAGC 57.557 39.130 0.00 0.00 34.99 3.09
5162 5876 0.108615 CTCCGAGTTTCGCACATCCT 60.109 55.000 0.00 0.00 38.82 3.24
5170 5884 1.079127 ATGGCACCTCCGAGTTTCG 60.079 57.895 0.00 0.00 40.07 3.46
5174 5888 2.060980 GGAGATGGCACCTCCGAGT 61.061 63.158 13.32 0.00 40.58 4.18
5175 5889 2.818132 GGAGATGGCACCTCCGAG 59.182 66.667 13.32 0.00 40.58 4.63
5179 5893 1.059006 AGATGGGGAGATGGCACCTC 61.059 60.000 0.00 0.00 0.00 3.85
5180 5894 0.268869 TAGATGGGGAGATGGCACCT 59.731 55.000 0.00 0.00 0.00 4.00
5181 5895 0.398318 GTAGATGGGGAGATGGCACC 59.602 60.000 0.00 0.00 0.00 5.01
5182 5896 1.131638 TGTAGATGGGGAGATGGCAC 58.868 55.000 0.00 0.00 0.00 5.01
5183 5897 1.701292 CATGTAGATGGGGAGATGGCA 59.299 52.381 0.00 0.00 0.00 4.92
5184 5898 1.980765 TCATGTAGATGGGGAGATGGC 59.019 52.381 0.00 0.00 0.00 4.40
5186 5900 4.285260 TCATGTCATGTAGATGGGGAGATG 59.715 45.833 12.54 0.00 32.39 2.90
5187 5901 4.496540 TCATGTCATGTAGATGGGGAGAT 58.503 43.478 12.54 0.00 29.82 2.75
5188 5902 3.927476 TCATGTCATGTAGATGGGGAGA 58.073 45.455 12.54 0.00 29.82 3.71
5189 5903 4.904895 ATCATGTCATGTAGATGGGGAG 57.095 45.455 12.54 0.00 29.82 4.30
5190 5904 4.223700 GCTATCATGTCATGTAGATGGGGA 59.776 45.833 18.72 0.00 29.82 4.81
5191 5905 4.224594 AGCTATCATGTCATGTAGATGGGG 59.775 45.833 18.72 4.79 29.82 4.96
5192 5906 5.417754 AGCTATCATGTCATGTAGATGGG 57.582 43.478 18.72 5.60 29.82 4.00
5202 5916 7.870509 ATTCTTTGCTTAAGCTATCATGTCA 57.129 32.000 26.90 1.54 42.66 3.58
5207 5921 8.918116 TCTCTCTATTCTTTGCTTAAGCTATCA 58.082 33.333 26.90 5.02 42.66 2.15
5208 5922 9.410556 CTCTCTCTATTCTTTGCTTAAGCTATC 57.589 37.037 26.90 0.00 42.66 2.08
5273 5992 5.874895 TTCATTGTGCTCTCATTCAGAAG 57.125 39.130 0.00 0.00 0.00 2.85
5280 5999 7.876936 ATCTTTGTATTCATTGTGCTCTCAT 57.123 32.000 0.00 0.00 0.00 2.90
5281 6000 7.692460 AATCTTTGTATTCATTGTGCTCTCA 57.308 32.000 0.00 0.00 0.00 3.27
5286 6005 7.430502 GTGCTCTAATCTTTGTATTCATTGTGC 59.569 37.037 0.00 0.00 0.00 4.57
5289 6008 6.630443 GCGTGCTCTAATCTTTGTATTCATTG 59.370 38.462 0.00 0.00 0.00 2.82
5290 6009 6.540189 AGCGTGCTCTAATCTTTGTATTCATT 59.460 34.615 0.00 0.00 0.00 2.57
5291 6010 6.018425 CAGCGTGCTCTAATCTTTGTATTCAT 60.018 38.462 0.00 0.00 0.00 2.57
5292 6011 5.291858 CAGCGTGCTCTAATCTTTGTATTCA 59.708 40.000 0.00 0.00 0.00 2.57
5294 6013 5.063944 CACAGCGTGCTCTAATCTTTGTATT 59.936 40.000 0.00 0.00 0.00 1.89
5295 6014 4.568359 CACAGCGTGCTCTAATCTTTGTAT 59.432 41.667 0.00 0.00 0.00 2.29
5296 6015 3.926527 CACAGCGTGCTCTAATCTTTGTA 59.073 43.478 0.00 0.00 0.00 2.41
5297 6016 2.738846 CACAGCGTGCTCTAATCTTTGT 59.261 45.455 0.00 0.00 0.00 2.83
5298 6017 2.995939 TCACAGCGTGCTCTAATCTTTG 59.004 45.455 0.00 0.00 32.98 2.77
5303 6022 1.273606 AGTGTCACAGCGTGCTCTAAT 59.726 47.619 5.62 0.00 32.98 1.73
5304 6023 0.673985 AGTGTCACAGCGTGCTCTAA 59.326 50.000 5.62 0.00 32.98 2.10
5305 6024 0.673985 AAGTGTCACAGCGTGCTCTA 59.326 50.000 5.62 0.00 32.98 2.43
5306 6025 0.673985 TAAGTGTCACAGCGTGCTCT 59.326 50.000 5.62 3.94 32.98 4.09
5307 6026 1.656095 GATAAGTGTCACAGCGTGCTC 59.344 52.381 5.62 1.87 32.98 4.26
5308 6027 1.000843 TGATAAGTGTCACAGCGTGCT 59.999 47.619 5.62 0.00 32.98 4.40
5325 6044 4.697352 CAGAAACGAGGGTGAGATTTTGAT 59.303 41.667 0.00 0.00 0.00 2.57
5340 6059 2.631160 TTTTCAGAGGCCAGAAACGA 57.369 45.000 15.03 2.66 33.82 3.85
5365 6084 2.159142 ACAGAAACGGGTGATCGGATAC 60.159 50.000 0.00 0.00 0.00 2.24
5366 6085 2.104967 ACAGAAACGGGTGATCGGATA 58.895 47.619 0.00 0.00 0.00 2.59
5367 6086 0.902531 ACAGAAACGGGTGATCGGAT 59.097 50.000 0.00 0.00 0.00 4.18
5368 6087 0.682852 AACAGAAACGGGTGATCGGA 59.317 50.000 0.00 0.00 0.00 4.55
5369 6088 1.519408 AAACAGAAACGGGTGATCGG 58.481 50.000 0.00 0.00 0.00 4.18
5370 6089 3.250040 AGAAAAACAGAAACGGGTGATCG 59.750 43.478 0.00 0.00 0.00 3.69
5371 6090 4.830826 AGAAAAACAGAAACGGGTGATC 57.169 40.909 0.00 0.00 0.00 2.92
5372 6091 5.451381 GGAAAGAAAAACAGAAACGGGTGAT 60.451 40.000 0.00 0.00 0.00 3.06
5373 6092 4.142337 GGAAAGAAAAACAGAAACGGGTGA 60.142 41.667 0.00 0.00 0.00 4.02
5374 6093 4.109766 GGAAAGAAAAACAGAAACGGGTG 58.890 43.478 0.00 0.00 0.00 4.61
5375 6094 4.021229 AGGAAAGAAAAACAGAAACGGGT 58.979 39.130 0.00 0.00 0.00 5.28
5377 6096 6.961359 AAAAGGAAAGAAAAACAGAAACGG 57.039 33.333 0.00 0.00 0.00 4.44
5400 6119 4.870991 CGGGTTTTTGCCTCTGTTTAAAAA 59.129 37.500 0.00 0.00 31.72 1.94
5401 6120 4.081586 ACGGGTTTTTGCCTCTGTTTAAAA 60.082 37.500 0.00 0.00 0.00 1.52
5402 6121 3.447944 ACGGGTTTTTGCCTCTGTTTAAA 59.552 39.130 0.00 0.00 0.00 1.52
5403 6122 3.025262 ACGGGTTTTTGCCTCTGTTTAA 58.975 40.909 0.00 0.00 0.00 1.52
5404 6123 2.657143 ACGGGTTTTTGCCTCTGTTTA 58.343 42.857 0.00 0.00 0.00 2.01
5405 6124 1.480789 ACGGGTTTTTGCCTCTGTTT 58.519 45.000 0.00 0.00 0.00 2.83
5406 6125 2.351706 TACGGGTTTTTGCCTCTGTT 57.648 45.000 0.00 0.00 0.00 3.16
5407 6126 2.039879 AGATACGGGTTTTTGCCTCTGT 59.960 45.455 0.00 0.00 0.00 3.41
5408 6127 2.420022 CAGATACGGGTTTTTGCCTCTG 59.580 50.000 0.00 0.00 0.00 3.35
5409 6128 2.039879 ACAGATACGGGTTTTTGCCTCT 59.960 45.455 0.00 0.00 0.00 3.69
5410 6129 2.433436 ACAGATACGGGTTTTTGCCTC 58.567 47.619 0.00 0.00 0.00 4.70
5411 6130 2.579410 ACAGATACGGGTTTTTGCCT 57.421 45.000 0.00 0.00 0.00 4.75
5412 6131 2.817844 AGAACAGATACGGGTTTTTGCC 59.182 45.455 0.00 0.00 0.00 4.52
5413 6132 3.500680 TCAGAACAGATACGGGTTTTTGC 59.499 43.478 0.00 0.00 0.00 3.68
5414 6133 5.682943 TTCAGAACAGATACGGGTTTTTG 57.317 39.130 0.00 0.00 0.00 2.44
5415 6134 6.001460 TCATTCAGAACAGATACGGGTTTTT 58.999 36.000 0.00 0.00 0.00 1.94
5416 6135 5.556915 TCATTCAGAACAGATACGGGTTTT 58.443 37.500 0.00 0.00 0.00 2.43
5417 6136 5.160607 TCATTCAGAACAGATACGGGTTT 57.839 39.130 0.00 0.00 0.00 3.27
5418 6137 4.759782 CTCATTCAGAACAGATACGGGTT 58.240 43.478 0.00 0.00 0.00 4.11
5419 6138 3.430929 GCTCATTCAGAACAGATACGGGT 60.431 47.826 0.00 0.00 0.00 5.28
5425 6144 3.533547 GAGCAGCTCATTCAGAACAGAT 58.466 45.455 18.17 0.00 0.00 2.90
5441 6160 2.356313 AAGTGTCACGGCGAGCAG 60.356 61.111 16.62 0.00 0.00 4.24
5461 6180 1.806542 CAGAAACGGGGTGAGATTGTG 59.193 52.381 0.00 0.00 0.00 3.33
5475 6194 1.600916 AGACCAAGCGGCCAGAAAC 60.601 57.895 2.24 0.00 34.57 2.78
5484 6203 2.758089 GCTGGCATCAGACCAAGCG 61.758 63.158 0.00 0.00 43.49 4.68
5521 6240 4.679372 GCCAGTCTCTAGAAAAGTAGCCTG 60.679 50.000 0.00 0.00 0.00 4.85
5540 6678 2.159379 GGCTACCGAATTTTCTTGCCAG 60.159 50.000 0.00 0.00 38.99 4.85
5552 6690 5.335348 GCACTCTAAAAATTTGGCTACCGAA 60.335 40.000 0.00 0.00 0.00 4.30
5560 6698 4.444056 CGTGTTGGCACTCTAAAAATTTGG 59.556 41.667 0.00 0.00 43.16 3.28
5563 6701 4.911514 ACGTGTTGGCACTCTAAAAATT 57.088 36.364 0.00 0.00 43.16 1.82
5564 6702 4.606961 CAACGTGTTGGCACTCTAAAAAT 58.393 39.130 4.82 0.00 43.16 1.82
5597 6746 1.203052 CTGCTTGGTTCGATGCCAATT 59.797 47.619 18.39 0.00 44.06 2.32
5607 6756 2.880890 ACACAATGAGACTGCTTGGTTC 59.119 45.455 0.00 0.00 0.00 3.62
5624 6773 9.855021 CATATATATGACTCGTTTCCATACACA 57.145 33.333 16.44 0.00 35.75 3.72
5769 6949 3.135225 TCGTCGTTCATGTGACCATTTT 58.865 40.909 8.98 0.00 0.00 1.82
5778 6958 2.234300 ACCTGTTTCGTCGTTCATGT 57.766 45.000 0.00 0.00 0.00 3.21
5831 7019 1.354337 CGTTGTGATGACCCTGCTCG 61.354 60.000 0.00 0.00 0.00 5.03
5838 7026 1.060713 CGACTGTCGTTGTGATGACC 58.939 55.000 21.30 0.00 40.41 4.02
5842 7030 2.814410 CAGCGACTGTCGTTGTGAT 58.186 52.632 30.50 10.48 44.29 3.06
5843 7031 4.319249 CAGCGACTGTCGTTGTGA 57.681 55.556 30.50 0.00 44.29 3.58
5982 7170 4.082523 CCGTCACCATCCACGCCT 62.083 66.667 0.00 0.00 34.58 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.