Multiple sequence alignment - TraesCS4A01G038000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G038000 chr4A 100.000 4613 0 0 1 4613 30150946 30146334 0.000000e+00 8519
1 TraesCS4A01G038000 chr4D 92.037 1532 70 23 1655 3160 437951318 437952823 0.000000e+00 2106
2 TraesCS4A01G038000 chr4D 87.167 1426 84 48 241 1630 437949884 437951246 0.000000e+00 1528
3 TraesCS4A01G038000 chr4D 91.451 772 42 13 3164 3918 437952975 437953739 0.000000e+00 1038
4 TraesCS4A01G038000 chr4D 86.480 429 39 11 4084 4511 437953915 437954325 1.960000e-123 453
5 TraesCS4A01G038000 chr4D 83.654 104 17 0 4101 4204 475674566 475674669 1.060000e-16 99
6 TraesCS4A01G038000 chr4B 94.394 1106 50 8 1655 2758 541364006 541365101 0.000000e+00 1688
7 TraesCS4A01G038000 chr4B 88.199 1449 94 35 241 1655 541362557 541363962 0.000000e+00 1657
8 TraesCS4A01G038000 chr4B 88.760 605 44 7 3379 3977 541367194 541367780 0.000000e+00 719
9 TraesCS4A01G038000 chr4B 89.223 399 19 11 2771 3160 541365146 541365529 1.160000e-130 477
10 TraesCS4A01G038000 chr4B 84.634 410 35 15 4107 4511 541369490 541369876 2.600000e-102 383
11 TraesCS4A01G038000 chr4B 88.261 230 19 4 3164 3388 541365586 541365812 7.610000e-68 268
12 TraesCS4A01G038000 chr6B 77.846 325 55 10 4015 4333 325026866 325027179 7.880000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G038000 chr4A 30146334 30150946 4612 True 8519.000000 8519 100.000000 1 4613 1 chr4A.!!$R1 4612
1 TraesCS4A01G038000 chr4D 437949884 437954325 4441 False 1281.250000 2106 89.283750 241 4511 4 chr4D.!!$F2 4270
2 TraesCS4A01G038000 chr4B 541362557 541369876 7319 False 865.333333 1688 88.911833 241 4511 6 chr4B.!!$F1 4270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
976 1011 0.104671 CTTGCAGCTAGGGAGAGAGC 59.895 60.0 0.00 0.00 39.08 4.09 F
988 1023 0.170116 GAGAGAGCGAGTGAGTGGTG 59.830 60.0 0.00 0.00 0.00 4.17 F
1430 1478 0.319297 GTAGGCGCCGGATCGTTTAT 60.319 55.0 23.20 0.95 0.00 1.40 F
3146 3304 0.248539 CACGGTTCTAGCTAGGACGC 60.249 60.0 23.19 15.80 32.39 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2077 2181 0.319211 TTAGTTGGACAGTGACCGCG 60.319 55.000 0.00 0.00 0.00 6.46 R
2207 2316 2.484062 CCGGTAGGCGTCCACGTAT 61.484 63.158 0.00 0.00 42.22 3.06 R
3335 3644 1.095228 TTTTGCCTGGCGATCGATCC 61.095 55.000 21.57 12.28 0.00 3.36 R
4538 7871 0.035458 TCCACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.303257 GCTGAAGCTAAAGCCGGT 57.697 55.556 1.90 0.00 43.38 5.28
18 19 2.090693 GCTGAAGCTAAAGCCGGTC 58.909 57.895 1.90 0.00 43.38 4.79
19 20 1.696832 GCTGAAGCTAAAGCCGGTCG 61.697 60.000 1.90 0.00 43.38 4.79
20 21 0.389948 CTGAAGCTAAAGCCGGTCGT 60.390 55.000 1.90 0.00 43.38 4.34
21 22 0.389426 TGAAGCTAAAGCCGGTCGTC 60.389 55.000 1.90 0.00 43.38 4.20
22 23 0.389426 GAAGCTAAAGCCGGTCGTCA 60.389 55.000 1.90 0.00 43.38 4.35
23 24 0.389948 AAGCTAAAGCCGGTCGTCAG 60.390 55.000 1.90 0.00 43.38 3.51
24 25 1.080025 GCTAAAGCCGGTCGTCAGT 60.080 57.895 1.90 0.00 34.31 3.41
25 26 1.352156 GCTAAAGCCGGTCGTCAGTG 61.352 60.000 1.90 0.00 34.31 3.66
26 27 0.736325 CTAAAGCCGGTCGTCAGTGG 60.736 60.000 1.90 0.00 0.00 4.00
27 28 1.180456 TAAAGCCGGTCGTCAGTGGA 61.180 55.000 1.90 0.00 0.00 4.02
28 29 2.035237 AAAGCCGGTCGTCAGTGGAA 62.035 55.000 1.90 0.00 0.00 3.53
29 30 2.029964 GCCGGTCGTCAGTGGAAA 59.970 61.111 1.90 0.00 0.00 3.13
30 31 2.315386 GCCGGTCGTCAGTGGAAAC 61.315 63.158 1.90 0.00 0.00 2.78
31 32 1.068417 CCGGTCGTCAGTGGAAACA 59.932 57.895 0.00 0.00 38.70 2.83
32 33 0.944311 CCGGTCGTCAGTGGAAACAG 60.944 60.000 0.00 0.00 44.46 3.16
33 34 1.557443 CGGTCGTCAGTGGAAACAGC 61.557 60.000 0.00 0.00 44.46 4.40
34 35 0.531974 GGTCGTCAGTGGAAACAGCA 60.532 55.000 0.00 0.00 44.46 4.41
35 36 1.295792 GTCGTCAGTGGAAACAGCAA 58.704 50.000 0.00 0.00 44.46 3.91
36 37 1.873591 GTCGTCAGTGGAAACAGCAAT 59.126 47.619 0.00 0.00 44.46 3.56
37 38 2.096218 GTCGTCAGTGGAAACAGCAATC 60.096 50.000 0.00 0.00 44.46 2.67
38 39 1.136252 CGTCAGTGGAAACAGCAATCG 60.136 52.381 0.00 0.00 44.46 3.34
39 40 1.873591 GTCAGTGGAAACAGCAATCGT 59.126 47.619 0.00 0.00 44.46 3.73
40 41 2.096218 GTCAGTGGAAACAGCAATCGTC 60.096 50.000 0.00 0.00 44.46 4.20
41 42 1.197721 CAGTGGAAACAGCAATCGTCC 59.802 52.381 0.00 0.00 44.46 4.79
42 43 1.202758 AGTGGAAACAGCAATCGTCCA 60.203 47.619 0.00 0.00 44.46 4.02
43 44 1.606668 GTGGAAACAGCAATCGTCCAA 59.393 47.619 0.00 0.00 44.46 3.53
44 45 2.034053 GTGGAAACAGCAATCGTCCAAA 59.966 45.455 0.00 0.00 44.46 3.28
45 46 2.293122 TGGAAACAGCAATCGTCCAAAG 59.707 45.455 0.00 0.00 35.45 2.77
46 47 2.319472 GAAACAGCAATCGTCCAAAGC 58.681 47.619 0.00 0.00 0.00 3.51
47 48 0.598065 AACAGCAATCGTCCAAAGCC 59.402 50.000 0.00 0.00 0.00 4.35
48 49 0.250901 ACAGCAATCGTCCAAAGCCT 60.251 50.000 0.00 0.00 0.00 4.58
49 50 0.449388 CAGCAATCGTCCAAAGCCTC 59.551 55.000 0.00 0.00 0.00 4.70
50 51 0.678048 AGCAATCGTCCAAAGCCTCC 60.678 55.000 0.00 0.00 0.00 4.30
51 52 1.657751 GCAATCGTCCAAAGCCTCCC 61.658 60.000 0.00 0.00 0.00 4.30
52 53 0.322456 CAATCGTCCAAAGCCTCCCA 60.322 55.000 0.00 0.00 0.00 4.37
53 54 0.322546 AATCGTCCAAAGCCTCCCAC 60.323 55.000 0.00 0.00 0.00 4.61
54 55 2.198304 ATCGTCCAAAGCCTCCCACC 62.198 60.000 0.00 0.00 0.00 4.61
55 56 2.035783 GTCCAAAGCCTCCCACCC 59.964 66.667 0.00 0.00 0.00 4.61
56 57 2.451493 TCCAAAGCCTCCCACCCA 60.451 61.111 0.00 0.00 0.00 4.51
57 58 2.283173 CCAAAGCCTCCCACCCAC 60.283 66.667 0.00 0.00 0.00 4.61
58 59 2.845345 CCAAAGCCTCCCACCCACT 61.845 63.158 0.00 0.00 0.00 4.00
59 60 1.303643 CAAAGCCTCCCACCCACTC 60.304 63.158 0.00 0.00 0.00 3.51
60 61 1.774217 AAAGCCTCCCACCCACTCA 60.774 57.895 0.00 0.00 0.00 3.41
61 62 1.360393 AAAGCCTCCCACCCACTCAA 61.360 55.000 0.00 0.00 0.00 3.02
62 63 1.360393 AAGCCTCCCACCCACTCAAA 61.360 55.000 0.00 0.00 0.00 2.69
63 64 1.142688 AGCCTCCCACCCACTCAAAT 61.143 55.000 0.00 0.00 0.00 2.32
64 65 0.681243 GCCTCCCACCCACTCAAATC 60.681 60.000 0.00 0.00 0.00 2.17
65 66 0.698238 CCTCCCACCCACTCAAATCA 59.302 55.000 0.00 0.00 0.00 2.57
66 67 1.285962 CCTCCCACCCACTCAAATCAT 59.714 52.381 0.00 0.00 0.00 2.45
67 68 2.509548 CCTCCCACCCACTCAAATCATA 59.490 50.000 0.00 0.00 0.00 2.15
68 69 3.545703 CTCCCACCCACTCAAATCATAC 58.454 50.000 0.00 0.00 0.00 2.39
69 70 2.241176 TCCCACCCACTCAAATCATACC 59.759 50.000 0.00 0.00 0.00 2.73
70 71 2.025416 CCCACCCACTCAAATCATACCA 60.025 50.000 0.00 0.00 0.00 3.25
71 72 3.282021 CCACCCACTCAAATCATACCAG 58.718 50.000 0.00 0.00 0.00 4.00
72 73 3.054434 CCACCCACTCAAATCATACCAGA 60.054 47.826 0.00 0.00 0.00 3.86
73 74 4.385643 CCACCCACTCAAATCATACCAGAT 60.386 45.833 0.00 0.00 0.00 2.90
74 75 4.818546 CACCCACTCAAATCATACCAGATC 59.181 45.833 0.00 0.00 0.00 2.75
75 76 4.141390 ACCCACTCAAATCATACCAGATCC 60.141 45.833 0.00 0.00 0.00 3.36
76 77 4.141413 CCCACTCAAATCATACCAGATCCA 60.141 45.833 0.00 0.00 0.00 3.41
77 78 5.439721 CCACTCAAATCATACCAGATCCAA 58.560 41.667 0.00 0.00 0.00 3.53
78 79 5.297776 CCACTCAAATCATACCAGATCCAAC 59.702 44.000 0.00 0.00 0.00 3.77
79 80 5.007039 CACTCAAATCATACCAGATCCAACG 59.993 44.000 0.00 0.00 0.00 4.10
80 81 5.104941 ACTCAAATCATACCAGATCCAACGA 60.105 40.000 0.00 0.00 0.00 3.85
81 82 5.359756 TCAAATCATACCAGATCCAACGAG 58.640 41.667 0.00 0.00 0.00 4.18
82 83 4.342862 AATCATACCAGATCCAACGAGG 57.657 45.455 0.00 0.00 39.47 4.63
83 84 1.412710 TCATACCAGATCCAACGAGGC 59.587 52.381 0.00 0.00 37.29 4.70
84 85 1.138859 CATACCAGATCCAACGAGGCA 59.861 52.381 0.00 0.00 37.29 4.75
85 86 0.535335 TACCAGATCCAACGAGGCAC 59.465 55.000 0.00 0.00 37.29 5.01
86 87 1.450312 CCAGATCCAACGAGGCACC 60.450 63.158 0.00 0.00 37.29 5.01
87 88 1.450312 CAGATCCAACGAGGCACCC 60.450 63.158 0.00 0.00 37.29 4.61
88 89 2.511600 GATCCAACGAGGCACCCG 60.512 66.667 0.00 0.00 37.29 5.28
89 90 4.778143 ATCCAACGAGGCACCCGC 62.778 66.667 0.00 0.00 37.29 6.13
113 114 2.744709 GCGCCGGCTAGTTCCAAA 60.745 61.111 26.68 0.00 35.83 3.28
114 115 2.329614 GCGCCGGCTAGTTCCAAAA 61.330 57.895 26.68 0.00 35.83 2.44
115 116 1.794222 CGCCGGCTAGTTCCAAAAG 59.206 57.895 26.68 0.00 0.00 2.27
116 117 1.506718 GCCGGCTAGTTCCAAAAGC 59.493 57.895 22.15 0.00 35.47 3.51
117 118 0.960861 GCCGGCTAGTTCCAAAAGCT 60.961 55.000 22.15 0.00 36.48 3.74
118 119 0.804989 CCGGCTAGTTCCAAAAGCTG 59.195 55.000 0.00 0.00 41.38 4.24
119 120 0.169009 CGGCTAGTTCCAAAAGCTGC 59.831 55.000 0.00 0.00 35.95 5.25
120 121 0.169009 GGCTAGTTCCAAAAGCTGCG 59.831 55.000 0.00 0.00 36.48 5.18
121 122 1.156736 GCTAGTTCCAAAAGCTGCGA 58.843 50.000 0.00 0.00 33.40 5.10
122 123 1.740025 GCTAGTTCCAAAAGCTGCGAT 59.260 47.619 0.00 0.00 33.40 4.58
123 124 2.223135 GCTAGTTCCAAAAGCTGCGATC 60.223 50.000 0.00 0.00 33.40 3.69
124 125 1.168714 AGTTCCAAAAGCTGCGATCC 58.831 50.000 0.00 0.00 0.00 3.36
125 126 0.171231 GTTCCAAAAGCTGCGATCCC 59.829 55.000 0.00 0.00 0.00 3.85
126 127 0.965363 TTCCAAAAGCTGCGATCCCC 60.965 55.000 0.00 0.00 0.00 4.81
127 128 1.379044 CCAAAAGCTGCGATCCCCT 60.379 57.895 0.00 0.00 0.00 4.79
128 129 1.379642 CCAAAAGCTGCGATCCCCTC 61.380 60.000 0.00 0.00 0.00 4.30
129 130 0.393537 CAAAAGCTGCGATCCCCTCT 60.394 55.000 0.00 0.00 0.00 3.69
130 131 0.107459 AAAAGCTGCGATCCCCTCTC 60.107 55.000 0.00 0.00 0.00 3.20
131 132 1.267574 AAAGCTGCGATCCCCTCTCA 61.268 55.000 0.00 0.00 0.00 3.27
132 133 1.053264 AAGCTGCGATCCCCTCTCAT 61.053 55.000 0.00 0.00 0.00 2.90
133 134 1.005156 GCTGCGATCCCCTCTCATC 60.005 63.158 0.00 0.00 0.00 2.92
134 135 1.752358 GCTGCGATCCCCTCTCATCA 61.752 60.000 0.00 0.00 0.00 3.07
135 136 0.975135 CTGCGATCCCCTCTCATCAT 59.025 55.000 0.00 0.00 0.00 2.45
136 137 0.972134 TGCGATCCCCTCTCATCATC 59.028 55.000 0.00 0.00 0.00 2.92
137 138 0.248843 GCGATCCCCTCTCATCATCC 59.751 60.000 0.00 0.00 0.00 3.51
138 139 0.529833 CGATCCCCTCTCATCATCCG 59.470 60.000 0.00 0.00 0.00 4.18
139 140 0.248843 GATCCCCTCTCATCATCCGC 59.751 60.000 0.00 0.00 0.00 5.54
140 141 0.178909 ATCCCCTCTCATCATCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
141 142 0.829602 TCCCCTCTCATCATCCGCTC 60.830 60.000 0.00 0.00 0.00 5.03
142 143 1.117749 CCCCTCTCATCATCCGCTCA 61.118 60.000 0.00 0.00 0.00 4.26
143 144 0.755079 CCCTCTCATCATCCGCTCAA 59.245 55.000 0.00 0.00 0.00 3.02
144 145 1.347050 CCCTCTCATCATCCGCTCAAT 59.653 52.381 0.00 0.00 0.00 2.57
145 146 2.224475 CCCTCTCATCATCCGCTCAATT 60.224 50.000 0.00 0.00 0.00 2.32
146 147 2.806818 CCTCTCATCATCCGCTCAATTG 59.193 50.000 0.00 0.00 0.00 2.32
147 148 3.464907 CTCTCATCATCCGCTCAATTGT 58.535 45.455 5.13 0.00 0.00 2.71
148 149 3.461061 TCTCATCATCCGCTCAATTGTC 58.539 45.455 5.13 0.00 0.00 3.18
149 150 3.118665 TCTCATCATCCGCTCAATTGTCA 60.119 43.478 5.13 0.00 0.00 3.58
150 151 3.608796 TCATCATCCGCTCAATTGTCAA 58.391 40.909 5.13 0.00 0.00 3.18
151 152 4.009002 TCATCATCCGCTCAATTGTCAAA 58.991 39.130 5.13 0.00 0.00 2.69
152 153 4.641541 TCATCATCCGCTCAATTGTCAAAT 59.358 37.500 5.13 0.00 0.00 2.32
153 154 5.125900 TCATCATCCGCTCAATTGTCAAATT 59.874 36.000 5.13 0.00 36.39 1.82
154 155 5.389859 TCATCCGCTCAATTGTCAAATTT 57.610 34.783 5.13 0.00 33.59 1.82
155 156 6.507958 TCATCCGCTCAATTGTCAAATTTA 57.492 33.333 5.13 0.00 33.59 1.40
156 157 6.918626 TCATCCGCTCAATTGTCAAATTTAA 58.081 32.000 5.13 0.00 33.59 1.52
157 158 7.028962 TCATCCGCTCAATTGTCAAATTTAAG 58.971 34.615 5.13 0.00 33.59 1.85
158 159 5.160641 TCCGCTCAATTGTCAAATTTAAGC 58.839 37.500 5.13 2.77 37.99 3.09
159 160 4.327087 CCGCTCAATTGTCAAATTTAAGCC 59.673 41.667 5.13 0.00 38.04 4.35
160 161 4.030529 CGCTCAATTGTCAAATTTAAGCCG 59.969 41.667 5.13 0.00 38.04 5.52
161 162 5.160641 GCTCAATTGTCAAATTTAAGCCGA 58.839 37.500 5.13 0.00 36.68 5.54
162 163 5.807011 GCTCAATTGTCAAATTTAAGCCGAT 59.193 36.000 5.13 0.00 36.68 4.18
163 164 6.020360 GCTCAATTGTCAAATTTAAGCCGATC 60.020 38.462 5.13 0.00 36.68 3.69
164 165 6.027131 TCAATTGTCAAATTTAAGCCGATCG 58.973 36.000 8.51 8.51 33.59 3.69
165 166 3.398954 TGTCAAATTTAAGCCGATCGC 57.601 42.857 10.32 5.46 37.98 4.58
166 167 2.222931 TGTCAAATTTAAGCCGATCGCG 60.223 45.455 10.32 0.00 44.76 5.87
167 168 2.029970 GTCAAATTTAAGCCGATCGCGA 59.970 45.455 13.09 13.09 44.76 5.87
168 169 2.869801 TCAAATTTAAGCCGATCGCGAT 59.130 40.909 23.97 23.97 44.76 4.58
169 170 3.059868 TCAAATTTAAGCCGATCGCGATC 60.060 43.478 33.93 33.93 44.76 3.69
170 171 2.148916 ATTTAAGCCGATCGCGATCA 57.851 45.000 39.26 23.72 44.76 2.92
171 172 1.487482 TTTAAGCCGATCGCGATCAG 58.513 50.000 39.26 32.37 44.76 2.90
172 173 0.939577 TTAAGCCGATCGCGATCAGC 60.940 55.000 37.88 37.88 44.76 4.26
182 183 2.125552 CGATCAGCGCTTGACCCA 60.126 61.111 7.50 0.00 38.99 4.51
183 184 2.456119 CGATCAGCGCTTGACCCAC 61.456 63.158 7.50 1.85 38.99 4.61
184 185 2.045926 ATCAGCGCTTGACCCACC 60.046 61.111 7.50 0.00 38.99 4.61
185 186 3.628646 ATCAGCGCTTGACCCACCC 62.629 63.158 7.50 0.00 38.99 4.61
186 187 4.641645 CAGCGCTTGACCCACCCA 62.642 66.667 7.50 0.00 0.00 4.51
187 188 3.884774 AGCGCTTGACCCACCCAA 61.885 61.111 2.64 0.00 0.00 4.12
188 189 2.909965 GCGCTTGACCCACCCAAA 60.910 61.111 0.00 0.00 0.00 3.28
189 190 3.039134 CGCTTGACCCACCCAAAC 58.961 61.111 0.00 0.00 0.00 2.93
190 191 2.561037 CGCTTGACCCACCCAAACC 61.561 63.158 0.00 0.00 0.00 3.27
191 192 2.207229 GCTTGACCCACCCAAACCC 61.207 63.158 0.00 0.00 0.00 4.11
192 193 1.231641 CTTGACCCACCCAAACCCA 59.768 57.895 0.00 0.00 0.00 4.51
193 194 0.397816 CTTGACCCACCCAAACCCAA 60.398 55.000 0.00 0.00 0.00 4.12
194 195 0.688087 TTGACCCACCCAAACCCAAC 60.688 55.000 0.00 0.00 0.00 3.77
195 196 1.835267 GACCCACCCAAACCCAACC 60.835 63.158 0.00 0.00 0.00 3.77
196 197 2.283809 CCCACCCAAACCCAACCA 59.716 61.111 0.00 0.00 0.00 3.67
197 198 1.836604 CCCACCCAAACCCAACCAG 60.837 63.158 0.00 0.00 0.00 4.00
198 199 1.231641 CCACCCAAACCCAACCAGA 59.768 57.895 0.00 0.00 0.00 3.86
199 200 0.827507 CCACCCAAACCCAACCAGAG 60.828 60.000 0.00 0.00 0.00 3.35
200 201 0.184933 CACCCAAACCCAACCAGAGA 59.815 55.000 0.00 0.00 0.00 3.10
201 202 0.478507 ACCCAAACCCAACCAGAGAG 59.521 55.000 0.00 0.00 0.00 3.20
202 203 0.251341 CCCAAACCCAACCAGAGAGG 60.251 60.000 0.00 0.00 45.67 3.69
204 205 0.895559 CAAACCCAACCAGAGAGGGC 60.896 60.000 0.00 0.00 46.88 5.19
205 206 2.081585 AAACCCAACCAGAGAGGGCC 62.082 60.000 0.00 0.00 46.88 5.80
206 207 3.732849 CCCAACCAGAGAGGGCCC 61.733 72.222 16.46 16.46 43.89 5.80
207 208 3.732849 CCAACCAGAGAGGGCCCC 61.733 72.222 21.43 10.60 43.89 5.80
208 209 3.732849 CAACCAGAGAGGGCCCCC 61.733 72.222 21.43 6.71 43.89 5.40
220 221 4.678743 GCCCCCGTCCCAAGCTTT 62.679 66.667 0.00 0.00 0.00 3.51
221 222 2.117423 CCCCCGTCCCAAGCTTTT 59.883 61.111 0.00 0.00 0.00 2.27
222 223 1.533033 CCCCCGTCCCAAGCTTTTT 60.533 57.895 0.00 0.00 0.00 1.94
348 349 1.369091 CGAGGCAGGCGCACTTATTT 61.369 55.000 10.83 0.00 41.24 1.40
428 429 7.427214 AGTCTATACGAGGCTAATTTTCACTC 58.573 38.462 0.00 0.00 38.80 3.51
435 436 2.101415 GGCTAATTTTCACTCCCCATGC 59.899 50.000 0.00 0.00 0.00 4.06
468 469 1.728426 CGCTGCTGCTGCTGAAAAC 60.728 57.895 25.43 7.09 40.01 2.43
568 573 2.956987 CTGAAAGTTGGGCTGGCG 59.043 61.111 0.00 0.00 0.00 5.69
603 608 4.028490 GGGTGGCACCGATGGACA 62.028 66.667 29.18 0.00 39.83 4.02
606 611 4.408821 TGGCACCGATGGACAGGC 62.409 66.667 0.00 0.00 0.00 4.85
649 654 3.957027 AAGCGCGCGACGTGACATA 62.957 57.895 37.18 0.00 46.11 2.29
650 655 4.247828 GCGCGCGACGTGACATAC 62.248 66.667 37.18 7.60 46.11 2.39
654 659 1.518522 GCGCGACGTGACATACTACG 61.519 60.000 12.10 0.00 45.19 3.51
736 751 0.548926 TACCAGGATGTTCCAGCCCA 60.549 55.000 0.00 0.00 41.38 5.36
737 752 1.077212 CCAGGATGTTCCAGCCCAG 60.077 63.158 0.00 0.00 41.38 4.45
738 753 1.751927 CAGGATGTTCCAGCCCAGC 60.752 63.158 0.00 0.00 41.38 4.85
739 754 2.440980 GGATGTTCCAGCCCAGCC 60.441 66.667 0.00 0.00 36.28 4.85
740 755 2.440980 GATGTTCCAGCCCAGCCC 60.441 66.667 0.00 0.00 0.00 5.19
741 756 3.267233 ATGTTCCAGCCCAGCCCA 61.267 61.111 0.00 0.00 0.00 5.36
742 757 3.292481 ATGTTCCAGCCCAGCCCAG 62.292 63.158 0.00 0.00 0.00 4.45
757 772 3.857854 CAGCTCCACACGCATCGC 61.858 66.667 0.00 0.00 0.00 4.58
792 815 2.306341 AGCATGATGACGACCTCAAG 57.694 50.000 0.00 0.00 30.60 3.02
796 819 0.904865 TGATGACGACCTCAAGCCCT 60.905 55.000 0.00 0.00 30.60 5.19
798 821 0.904865 ATGACGACCTCAAGCCCTCA 60.905 55.000 0.00 0.00 30.60 3.86
803 837 2.266055 CCTCAAGCCCTCACCGTC 59.734 66.667 0.00 0.00 0.00 4.79
807 841 4.681978 AAGCCCTCACCGTCGCAC 62.682 66.667 0.00 0.00 0.00 5.34
815 849 2.022129 CACCGTCGCACAGTCTTCC 61.022 63.158 0.00 0.00 0.00 3.46
827 862 4.576879 CACAGTCTTCCCTAGTAAAACCC 58.423 47.826 0.00 0.00 0.00 4.11
885 920 2.265109 GCAGAGCTGAGCAGAGCA 59.735 61.111 7.39 0.00 41.83 4.26
920 955 7.709613 TCTTCTAATATAAACGGCTTGACTTCC 59.290 37.037 0.00 0.00 0.00 3.46
951 986 1.423845 CCGTAGTTGCATTGCGGTC 59.576 57.895 16.54 0.00 38.72 4.79
976 1011 0.104671 CTTGCAGCTAGGGAGAGAGC 59.895 60.000 0.00 0.00 39.08 4.09
986 1021 1.662438 GGGAGAGAGCGAGTGAGTGG 61.662 65.000 0.00 0.00 0.00 4.00
987 1022 0.963355 GGAGAGAGCGAGTGAGTGGT 60.963 60.000 0.00 0.00 0.00 4.16
988 1023 0.170116 GAGAGAGCGAGTGAGTGGTG 59.830 60.000 0.00 0.00 0.00 4.17
991 1026 1.214062 GAGCGAGTGAGTGGTGAGG 59.786 63.158 0.00 0.00 0.00 3.86
992 1027 2.433318 GCGAGTGAGTGGTGAGGC 60.433 66.667 0.00 0.00 0.00 4.70
993 1028 2.126307 CGAGTGAGTGGTGAGGCG 60.126 66.667 0.00 0.00 0.00 5.52
994 1029 2.626780 CGAGTGAGTGGTGAGGCGA 61.627 63.158 0.00 0.00 0.00 5.54
995 1030 1.666011 GAGTGAGTGGTGAGGCGAA 59.334 57.895 0.00 0.00 0.00 4.70
1041 1081 2.045926 AAGCTCCATCACCACGCC 60.046 61.111 0.00 0.00 0.00 5.68
1172 1212 1.000827 CATCTACTACCTCTGCCGCAG 60.001 57.143 14.62 14.62 0.00 5.18
1213 1253 3.300934 TTCATGGAGCTCGCGCAGT 62.301 57.895 8.75 0.00 39.10 4.40
1214 1254 2.786539 TTCATGGAGCTCGCGCAGTT 62.787 55.000 8.75 1.57 39.10 3.16
1230 1270 4.344865 TTTCCCCACCAGCCGCTC 62.345 66.667 0.00 0.00 0.00 5.03
1253 1293 1.340405 CCTCAAAGGTAGGCATGCACT 60.340 52.381 21.36 16.19 0.00 4.40
1267 1307 1.527034 TGCACTTCTTCCATCTGCAC 58.473 50.000 0.00 0.00 32.97 4.57
1272 1312 2.373169 ACTTCTTCCATCTGCACCTTCA 59.627 45.455 0.00 0.00 0.00 3.02
1280 1320 0.390340 TCTGCACCTTCATCTGCGTC 60.390 55.000 0.00 0.00 36.08 5.19
1288 1332 1.191489 TTCATCTGCGTCCCTGGTCA 61.191 55.000 0.00 0.00 0.00 4.02
1290 1334 0.531532 CATCTGCGTCCCTGGTCATC 60.532 60.000 0.00 0.00 0.00 2.92
1317 1361 3.244764 GCCATGGCTGATGATCGAT 57.755 52.632 29.98 0.00 38.26 3.59
1319 1363 0.803117 CCATGGCTGATGATCGATGC 59.197 55.000 0.54 0.00 33.31 3.91
1324 1368 1.338864 GGCTGATGATCGATGCTCCAT 60.339 52.381 0.54 0.00 0.00 3.41
1333 1377 1.130373 TCGATGCTCCATTTTTGTCGC 59.870 47.619 0.00 0.00 0.00 5.19
1372 1416 4.463879 CTGACGCTGCTGAGGGGG 62.464 72.222 0.00 0.00 36.45 5.40
1396 1440 1.519246 CATGCCCGCTCTCTTCTCA 59.481 57.895 0.00 0.00 0.00 3.27
1422 1470 3.458163 CAAGAGGTAGGCGCCGGA 61.458 66.667 23.20 10.93 0.00 5.14
1430 1478 0.319297 GTAGGCGCCGGATCGTTTAT 60.319 55.000 23.20 0.95 0.00 1.40
1433 1481 1.278637 GCGCCGGATCGTTTATTGG 59.721 57.895 5.05 0.00 0.00 3.16
1440 1488 2.277084 GGATCGTTTATTGGACACGCT 58.723 47.619 0.00 0.00 33.85 5.07
1452 1500 1.468054 GGACACGCTCCGTACGTATTT 60.468 52.381 15.21 0.00 42.96 1.40
1453 1501 1.842546 GACACGCTCCGTACGTATTTC 59.157 52.381 15.21 0.00 42.96 2.17
1454 1502 1.470098 ACACGCTCCGTACGTATTTCT 59.530 47.619 15.21 0.00 42.96 2.52
1455 1503 2.107178 CACGCTCCGTACGTATTTCTC 58.893 52.381 15.21 0.00 42.96 2.87
1456 1504 1.267732 ACGCTCCGTACGTATTTCTCG 60.268 52.381 15.21 9.60 43.02 4.04
1457 1505 1.267732 CGCTCCGTACGTATTTCTCGT 60.268 52.381 15.21 0.00 43.86 4.18
1458 1506 2.107178 GCTCCGTACGTATTTCTCGTG 58.893 52.381 15.21 0.00 41.62 4.35
1459 1507 2.476854 GCTCCGTACGTATTTCTCGTGT 60.477 50.000 15.21 0.00 41.62 4.49
1460 1508 3.096461 CTCCGTACGTATTTCTCGTGTG 58.904 50.000 15.21 0.00 41.62 3.82
1461 1509 2.159531 TCCGTACGTATTTCTCGTGTGG 60.160 50.000 15.21 3.48 41.62 4.17
1462 1510 2.414559 CCGTACGTATTTCTCGTGTGGT 60.415 50.000 15.21 0.00 41.62 4.16
1463 1511 3.181511 CCGTACGTATTTCTCGTGTGGTA 60.182 47.826 15.21 0.00 41.62 3.25
1464 1512 4.024438 CGTACGTATTTCTCGTGTGGTAG 58.976 47.826 7.22 0.00 41.62 3.18
1465 1513 4.436050 CGTACGTATTTCTCGTGTGGTAGT 60.436 45.833 7.22 0.00 41.62 2.73
1471 1519 6.020916 CGTATTTCTCGTGTGGTAGTAATGTG 60.021 42.308 0.00 0.00 0.00 3.21
1480 1528 3.871594 GTGGTAGTAATGTGCTCATGGTC 59.128 47.826 1.29 0.00 34.19 4.02
1486 1534 1.913778 ATGTGCTCATGGTCTTGCAA 58.086 45.000 0.00 0.00 37.17 4.08
1491 1539 2.029739 TGCTCATGGTCTTGCAATTGTG 60.030 45.455 7.40 0.00 32.12 3.33
1494 1542 4.321156 GCTCATGGTCTTGCAATTGTGTTA 60.321 41.667 7.40 0.00 0.00 2.41
1563 1612 2.696506 TCGGAGAGCGACGTGATATAT 58.303 47.619 0.00 0.00 0.00 0.86
1630 1679 1.006832 CGGCTGTTCTTCCGGTAATG 58.993 55.000 0.00 0.00 41.82 1.90
1632 1681 2.706890 GGCTGTTCTTCCGGTAATGAA 58.293 47.619 0.00 0.00 0.00 2.57
1633 1682 3.078837 GGCTGTTCTTCCGGTAATGAAA 58.921 45.455 0.00 0.00 0.00 2.69
1636 1685 5.332707 GCTGTTCTTCCGGTAATGAAAATC 58.667 41.667 0.00 0.00 0.00 2.17
1640 1692 6.657117 TGTTCTTCCGGTAATGAAAATCATCA 59.343 34.615 0.00 0.00 35.76 3.07
1650 1702 6.615264 AATGAAAATCATCACTCTCCATCG 57.385 37.500 0.00 0.00 35.76 3.84
1655 1707 4.944619 ATCATCACTCTCCATCGCTTAA 57.055 40.909 0.00 0.00 0.00 1.85
1657 1709 2.961526 TCACTCTCCATCGCTTAACC 57.038 50.000 0.00 0.00 0.00 2.85
1658 1710 2.176045 TCACTCTCCATCGCTTAACCA 58.824 47.619 0.00 0.00 0.00 3.67
1660 1712 1.135083 ACTCTCCATCGCTTAACCACG 60.135 52.381 0.00 0.00 0.00 4.94
1661 1713 1.134367 CTCTCCATCGCTTAACCACGA 59.866 52.381 0.00 0.00 43.33 4.35
1663 1715 0.457166 TCCATCGCTTAACCACGACG 60.457 55.000 0.00 0.00 41.76 5.12
1664 1716 1.343821 CATCGCTTAACCACGACGC 59.656 57.895 0.00 0.00 41.76 5.19
1665 1717 1.080366 ATCGCTTAACCACGACGCA 60.080 52.632 0.00 0.00 41.76 5.24
1666 1718 0.459585 ATCGCTTAACCACGACGCAT 60.460 50.000 0.00 0.00 41.76 4.73
1668 1720 1.623081 CGCTTAACCACGACGCATGT 61.623 55.000 0.00 0.00 0.00 3.21
1669 1721 1.352114 GCTTAACCACGACGCATGTA 58.648 50.000 0.00 0.00 0.00 2.29
1674 1769 2.157834 ACCACGACGCATGTAAAAGA 57.842 45.000 0.00 0.00 0.00 2.52
1677 1772 3.223157 CCACGACGCATGTAAAAGAAAC 58.777 45.455 0.00 0.00 0.00 2.78
1709 1805 2.103771 TCTTCCTAGCATGACCATGAGC 59.896 50.000 13.67 0.00 41.20 4.26
1776 1875 3.878160 AAAAACAAGCCGTCTTTTCCA 57.122 38.095 0.00 0.00 0.00 3.53
1812 1911 1.810030 GTCCCCATTGTCGACTCGC 60.810 63.158 17.92 0.00 0.00 5.03
1851 1950 4.263068 CCAAGAGAGAGGAGCTGGTAAAAA 60.263 45.833 0.00 0.00 0.00 1.94
1942 2045 1.663695 ATTTATCACCCAACGGCTCG 58.336 50.000 0.00 0.00 0.00 5.03
1958 2062 1.855360 GCTCGAACGCTAGAATTCCTG 59.145 52.381 0.65 0.00 0.00 3.86
2014 2118 1.448013 GGTGGCGCCAGAAGTCTAC 60.448 63.158 33.73 15.73 37.17 2.59
2057 2161 7.749126 GTGTCCGAAGTAAAACCTGAATTTATG 59.251 37.037 0.00 0.00 0.00 1.90
2058 2162 7.446013 TGTCCGAAGTAAAACCTGAATTTATGT 59.554 33.333 0.00 0.00 0.00 2.29
2077 2181 0.603707 TGCAGCAGAAGTACAGCACC 60.604 55.000 0.00 0.00 33.37 5.01
2079 2183 1.374758 AGCAGAAGTACAGCACCGC 60.375 57.895 0.00 0.00 33.37 5.68
2107 2216 5.912955 CACTGTCCAACTAATTTTCGTTTCC 59.087 40.000 0.00 0.00 0.00 3.13
2606 2718 3.878519 GACGACGAGGAGGAGGCG 61.879 72.222 0.00 0.00 0.00 5.52
2693 2805 2.202932 ATCATCGTGGACAGCGGC 60.203 61.111 0.00 0.00 0.00 6.53
2769 2917 3.202097 GAGGAGAGGTAATCAGCTTTGC 58.798 50.000 0.00 0.00 30.99 3.68
2770 2918 2.843113 AGGAGAGGTAATCAGCTTTGCT 59.157 45.455 0.00 0.00 40.77 3.91
2771 2919 3.265479 AGGAGAGGTAATCAGCTTTGCTT 59.735 43.478 0.00 0.00 36.40 3.91
2772 2920 3.376546 GGAGAGGTAATCAGCTTTGCTTG 59.623 47.826 0.00 0.00 36.40 4.01
2812 2960 3.050120 CGTTCGTCACGTGTAGCG 58.950 61.111 16.51 17.61 44.49 4.26
2842 2990 8.684973 ACATATTCTCAGTTTGAAGTACGTAC 57.315 34.615 18.10 18.10 0.00 3.67
2843 2991 7.484007 ACATATTCTCAGTTTGAAGTACGTACG 59.516 37.037 19.49 15.01 0.00 3.67
2844 2992 4.818534 TCTCAGTTTGAAGTACGTACGT 57.181 40.909 25.98 25.98 0.00 3.57
2845 2993 5.922739 TCTCAGTTTGAAGTACGTACGTA 57.077 39.130 23.60 23.60 0.00 3.57
2867 3015 3.561725 AGTGAGCTGCAGTAGTTTTGAAC 59.438 43.478 16.64 1.74 0.00 3.18
2932 3080 3.845178 TGTCACATCGGTCACTCATTAC 58.155 45.455 0.00 0.00 0.00 1.89
2991 3140 1.745489 GTCTTTAGCCGTGGCAGGG 60.745 63.158 21.55 21.55 44.88 4.45
3025 3174 2.079158 AGATGAACATGCACGTCCTTG 58.921 47.619 0.00 0.00 0.00 3.61
3032 3181 2.358737 GCACGTCCTTGGTCCTGG 60.359 66.667 0.00 0.00 0.00 4.45
3038 3187 1.607148 CGTCCTTGGTCCTGGAAAAAC 59.393 52.381 0.00 0.00 33.72 2.43
3041 3190 1.607148 CCTTGGTCCTGGAAAAACGAC 59.393 52.381 0.00 0.00 0.00 4.34
3043 3192 1.670791 TGGTCCTGGAAAAACGACAC 58.329 50.000 0.00 0.00 0.00 3.67
3044 3193 1.065345 TGGTCCTGGAAAAACGACACA 60.065 47.619 0.00 0.00 0.00 3.72
3045 3194 1.602377 GGTCCTGGAAAAACGACACAG 59.398 52.381 0.00 0.00 0.00 3.66
3046 3195 2.285977 GTCCTGGAAAAACGACACAGT 58.714 47.619 0.00 0.00 0.00 3.55
3047 3196 3.460103 GTCCTGGAAAAACGACACAGTA 58.540 45.455 0.00 0.00 0.00 2.74
3048 3197 3.493503 GTCCTGGAAAAACGACACAGTAG 59.506 47.826 0.00 0.00 0.00 2.57
3049 3198 2.806244 CCTGGAAAAACGACACAGTAGG 59.194 50.000 0.00 0.00 0.00 3.18
3059 3208 4.196971 ACGACACAGTAGGAAAAAGCTTT 58.803 39.130 5.69 5.69 0.00 3.51
3069 3218 3.068560 GGAAAAAGCTTTCATGCATGCA 58.931 40.909 25.04 25.04 42.44 3.96
3083 3232 3.159283 ATGCATGCATGTCGTCGCG 62.159 57.895 31.74 0.00 35.03 5.87
3102 3260 4.283403 GCAGCCAAAGCGCCAACA 62.283 61.111 2.29 0.00 46.67 3.33
3122 3280 2.498481 CACATTGCAGGATCCATTGGTT 59.502 45.455 15.82 0.00 0.00 3.67
3123 3281 2.498481 ACATTGCAGGATCCATTGGTTG 59.502 45.455 15.82 3.03 0.00 3.77
3146 3304 0.248539 CACGGTTCTAGCTAGGACGC 60.249 60.000 23.19 15.80 32.39 5.19
3147 3305 1.009900 CGGTTCTAGCTAGGACGCG 60.010 63.158 23.19 22.06 32.39 6.01
3148 3306 1.299240 GGTTCTAGCTAGGACGCGC 60.299 63.158 23.19 8.40 32.39 6.86
3160 3318 1.488261 GGACGCGCTACTACCATTGC 61.488 60.000 5.73 0.00 0.00 3.56
3162 3320 0.390603 ACGCGCTACTACCATTGCAA 60.391 50.000 5.73 0.00 0.00 4.08
3165 3471 2.546778 GCGCTACTACCATTGCAAGTA 58.453 47.619 4.94 1.65 0.00 2.24
3180 3486 1.514678 AAGTACGTACGTGCCGACCA 61.515 55.000 30.25 5.88 0.00 4.02
3183 3489 1.585267 TACGTACGTGCCGACCATGT 61.585 55.000 30.25 1.29 45.39 3.21
3208 3514 1.889105 CCATGGATCCTCGTTGGCG 60.889 63.158 14.23 0.00 39.92 5.69
3240 3549 4.578898 ACGTTCAGGCGCGTCACA 62.579 61.111 15.58 0.00 36.54 3.58
3269 3578 3.111939 CTAGCCTAGCTGCGTCGT 58.888 61.111 0.00 0.00 40.10 4.34
3270 3579 1.009449 CTAGCCTAGCTGCGTCGTC 60.009 63.158 0.00 0.00 40.10 4.20
3271 3580 2.703425 CTAGCCTAGCTGCGTCGTCG 62.703 65.000 0.00 0.00 40.10 5.12
3288 3597 4.395583 GCGCTGCTGCAGTGTTCC 62.396 66.667 35.17 20.47 43.09 3.62
3345 3654 3.102668 GCTCGCTGGATCGATCGC 61.103 66.667 18.81 15.87 37.87 4.58
3351 3668 3.153781 TGGATCGATCGCCAGGCA 61.154 61.111 18.81 7.45 0.00 4.75
3370 3688 2.031157 GCAAAAGTGCCTTCACATACGT 60.031 45.455 0.00 0.00 45.68 3.57
3479 5188 6.258507 GCTGAGAATGGTTTTGTGTTTGAATT 59.741 34.615 0.00 0.00 0.00 2.17
3480 5189 7.437862 GCTGAGAATGGTTTTGTGTTTGAATTA 59.562 33.333 0.00 0.00 0.00 1.40
3481 5190 9.480053 CTGAGAATGGTTTTGTGTTTGAATTAT 57.520 29.630 0.00 0.00 0.00 1.28
3636 5349 1.960612 CGCCTCGGCTTAGCTATCT 59.039 57.895 3.59 0.00 39.32 1.98
3654 5367 8.884124 AGCTATCTAGATTAATCTCTGCTTCT 57.116 34.615 21.17 10.41 38.32 2.85
3656 5369 8.739039 GCTATCTAGATTAATCTCTGCTTCTGA 58.261 37.037 21.17 8.45 38.32 3.27
3678 5391 6.806751 TGACAGAGCATGTAGTAATAGTTCC 58.193 40.000 0.00 0.00 44.17 3.62
3773 5492 3.585862 TCTAGTTCGATGTTGGACAAGC 58.414 45.455 0.00 0.00 0.00 4.01
3832 5552 0.877071 TGAACGGTGAGAGTCGGTAC 59.123 55.000 0.00 0.00 0.00 3.34
3842 5562 4.511082 GTGAGAGTCGGTACTACTGTATCC 59.489 50.000 6.20 0.00 33.31 2.59
3873 5593 3.302480 CGGTAGCAATGCAAGTAATCGAC 60.302 47.826 8.35 0.00 0.00 4.20
3886 5606 0.250038 AATCGACTGATCATGCCCGG 60.250 55.000 0.00 0.00 32.24 5.73
3923 5643 1.916273 ACTGTATGTCACGCCCCCA 60.916 57.895 0.00 0.00 0.00 4.96
3924 5644 1.153369 CTGTATGTCACGCCCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
3925 5645 2.189521 GTATGTCACGCCCCCAGG 59.810 66.667 0.00 0.00 0.00 4.45
3938 5658 2.571216 CCCAGGCCCCGATACTACG 61.571 68.421 0.00 0.00 0.00 3.51
3948 5668 4.261572 GCCCCGATACTACGTAACAACATA 60.262 45.833 0.00 0.00 0.00 2.29
3954 5674 7.269937 CCGATACTACGTAACAACATATACAGC 59.730 40.741 0.00 0.00 0.00 4.40
3964 5684 4.081087 ACAACATATACAGCCGGACTTCTT 60.081 41.667 5.05 0.00 0.00 2.52
3970 5690 8.426489 ACATATACAGCCGGACTTCTTAAATTA 58.574 33.333 5.05 0.00 0.00 1.40
3973 5693 5.557866 ACAGCCGGACTTCTTAAATTAACT 58.442 37.500 5.05 0.00 0.00 2.24
3987 5707 9.895138 TCTTAAATTAACTACTGATACCCAACC 57.105 33.333 0.00 0.00 0.00 3.77
3991 5711 9.541884 AAATTAACTACTGATACCCAACCAAAT 57.458 29.630 0.00 0.00 0.00 2.32
3992 5712 8.747538 ATTAACTACTGATACCCAACCAAATC 57.252 34.615 0.00 0.00 0.00 2.17
3993 5713 5.112129 ACTACTGATACCCAACCAAATCC 57.888 43.478 0.00 0.00 0.00 3.01
3994 5714 3.382083 ACTGATACCCAACCAAATCCC 57.618 47.619 0.00 0.00 0.00 3.85
3995 5715 2.926329 ACTGATACCCAACCAAATCCCT 59.074 45.455 0.00 0.00 0.00 4.20
3996 5716 3.336694 ACTGATACCCAACCAAATCCCTT 59.663 43.478 0.00 0.00 0.00 3.95
3997 5717 4.542525 ACTGATACCCAACCAAATCCCTTA 59.457 41.667 0.00 0.00 0.00 2.69
3998 5718 5.015817 ACTGATACCCAACCAAATCCCTTAA 59.984 40.000 0.00 0.00 0.00 1.85
3999 5719 5.905088 TGATACCCAACCAAATCCCTTAAA 58.095 37.500 0.00 0.00 0.00 1.52
4000 5720 5.955355 TGATACCCAACCAAATCCCTTAAAG 59.045 40.000 0.00 0.00 0.00 1.85
4001 5721 4.207698 ACCCAACCAAATCCCTTAAAGT 57.792 40.909 0.00 0.00 0.00 2.66
4002 5722 4.157246 ACCCAACCAAATCCCTTAAAGTC 58.843 43.478 0.00 0.00 0.00 3.01
4003 5723 4.140782 ACCCAACCAAATCCCTTAAAGTCT 60.141 41.667 0.00 0.00 0.00 3.24
4004 5724 4.462834 CCCAACCAAATCCCTTAAAGTCTC 59.537 45.833 0.00 0.00 0.00 3.36
4005 5725 4.462834 CCAACCAAATCCCTTAAAGTCTCC 59.537 45.833 0.00 0.00 0.00 3.71
4006 5726 5.325239 CAACCAAATCCCTTAAAGTCTCCT 58.675 41.667 0.00 0.00 0.00 3.69
4007 5727 5.600669 ACCAAATCCCTTAAAGTCTCCTT 57.399 39.130 0.00 0.00 0.00 3.36
4008 5728 6.713731 ACCAAATCCCTTAAAGTCTCCTTA 57.286 37.500 0.00 0.00 0.00 2.69
4009 5729 7.098845 ACCAAATCCCTTAAAGTCTCCTTAA 57.901 36.000 0.00 0.00 0.00 1.85
4010 5730 7.532199 ACCAAATCCCTTAAAGTCTCCTTAAA 58.468 34.615 0.00 0.00 0.00 1.52
4011 5731 8.177456 ACCAAATCCCTTAAAGTCTCCTTAAAT 58.823 33.333 0.00 0.00 0.00 1.40
4012 5732 8.470002 CCAAATCCCTTAAAGTCTCCTTAAATG 58.530 37.037 0.00 0.00 0.00 2.32
4013 5733 7.646548 AATCCCTTAAAGTCTCCTTAAATGC 57.353 36.000 0.00 0.00 0.00 3.56
4053 5789 3.031013 CAACCAAACCCCTCAAAGTCTT 58.969 45.455 0.00 0.00 0.00 3.01
4062 6057 5.953571 ACCCCTCAAAGTCTTCTTAAATGT 58.046 37.500 0.00 0.00 33.09 2.71
4064 6059 6.265422 ACCCCTCAAAGTCTTCTTAAATGTTG 59.735 38.462 0.00 0.00 33.09 3.33
4103 6120 5.770663 TCCTCCACTCCTCTTATTTATCTCG 59.229 44.000 0.00 0.00 0.00 4.04
4105 7427 6.715718 CCTCCACTCCTCTTATTTATCTCGTA 59.284 42.308 0.00 0.00 0.00 3.43
4144 7466 0.249398 GTGACCGGGCATGTCTAGTT 59.751 55.000 16.47 0.00 33.83 2.24
4159 7481 2.426024 TCTAGTTAGTGGTCATGCGTCC 59.574 50.000 0.00 0.00 0.00 4.79
4174 7496 0.104120 CGTCCGCCACATAGGATTGA 59.896 55.000 0.00 0.00 41.22 2.57
4248 7580 7.058525 TCTCTCCTTTATTCATCACATGCATT 58.941 34.615 0.00 0.00 0.00 3.56
4253 7585 7.123098 TCCTTTATTCATCACATGCATTTGACT 59.877 33.333 17.43 5.06 0.00 3.41
4256 7588 3.688235 TCATCACATGCATTTGACTGGA 58.312 40.909 17.43 12.37 0.00 3.86
4265 7597 7.012610 CACATGCATTTGACTGGACATATAAGA 59.987 37.037 7.05 0.00 0.00 2.10
4294 7626 1.205893 GAGGGACATGACTGAGTGGAC 59.794 57.143 0.00 0.00 0.00 4.02
4295 7627 0.976641 GGGACATGACTGAGTGGACA 59.023 55.000 0.00 0.00 0.00 4.02
4297 7629 1.895798 GGACATGACTGAGTGGACAGA 59.104 52.381 0.00 0.00 40.63 3.41
4306 7638 5.363868 TGACTGAGTGGACAGATAAATAGGG 59.636 44.000 0.00 0.00 40.63 3.53
4307 7639 5.529289 ACTGAGTGGACAGATAAATAGGGA 58.471 41.667 0.00 0.00 40.63 4.20
4308 7640 5.600484 ACTGAGTGGACAGATAAATAGGGAG 59.400 44.000 0.00 0.00 40.63 4.30
4309 7641 5.529289 TGAGTGGACAGATAAATAGGGAGT 58.471 41.667 0.00 0.00 0.00 3.85
4310 7642 5.598830 TGAGTGGACAGATAAATAGGGAGTC 59.401 44.000 0.00 0.00 0.00 3.36
4313 7645 6.443849 AGTGGACAGATAAATAGGGAGTCAAA 59.556 38.462 0.00 0.00 0.00 2.69
4317 7649 6.942976 ACAGATAAATAGGGAGTCAAAACGA 58.057 36.000 0.00 0.00 0.00 3.85
4321 7653 8.047310 AGATAAATAGGGAGTCAAAACGAACAT 58.953 33.333 0.00 0.00 0.00 2.71
4422 7754 2.768527 GGGAGTGAGGATTCAGACATGA 59.231 50.000 0.00 0.00 32.98 3.07
4433 7766 5.163488 GGATTCAGACATGATGCATTTCCAA 60.163 40.000 0.00 0.00 34.73 3.53
4479 7812 3.195396 TGCTGGTAAATGCATTTTCCCTC 59.805 43.478 32.61 25.83 36.67 4.30
4493 7826 2.806945 TCCCTCCTGCATTTACTTGG 57.193 50.000 0.00 0.00 0.00 3.61
4504 7837 3.676873 GCATTTACTTGGGTGCATCTTGG 60.677 47.826 0.00 0.00 37.52 3.61
4533 7866 1.476074 TTTTTGAGCAAAAGAGCGCG 58.524 45.000 0.00 0.00 40.83 6.86
4534 7867 0.317770 TTTTGAGCAAAAGAGCGCGG 60.318 50.000 8.83 0.00 40.15 6.46
4535 7868 2.128853 TTTGAGCAAAAGAGCGCGGG 62.129 55.000 8.83 0.00 40.15 6.13
4536 7869 3.050275 GAGCAAAAGAGCGCGGGT 61.050 61.111 8.83 0.00 40.15 5.28
4537 7870 3.314388 GAGCAAAAGAGCGCGGGTG 62.314 63.158 8.83 0.00 40.15 4.61
4538 7871 3.660111 GCAAAAGAGCGCGGGTGT 61.660 61.111 8.83 0.00 0.00 4.16
4539 7872 2.252260 CAAAAGAGCGCGGGTGTG 59.748 61.111 8.83 0.00 0.00 3.82
4540 7873 2.203153 AAAAGAGCGCGGGTGTGT 60.203 55.556 8.83 0.00 0.00 3.72
4541 7874 2.542907 AAAAGAGCGCGGGTGTGTG 61.543 57.895 8.83 0.00 0.00 3.82
4542 7875 3.750373 AAAGAGCGCGGGTGTGTGT 62.750 57.895 8.83 0.00 0.00 3.72
4543 7876 4.969196 AGAGCGCGGGTGTGTGTG 62.969 66.667 8.83 0.00 0.00 3.82
4547 7880 3.935872 CGCGGGTGTGTGTGTGTG 61.936 66.667 0.00 0.00 0.00 3.82
4548 7881 2.822255 GCGGGTGTGTGTGTGTGT 60.822 61.111 0.00 0.00 0.00 3.72
4549 7882 3.097672 CGGGTGTGTGTGTGTGTG 58.902 61.111 0.00 0.00 0.00 3.82
4550 7883 1.743623 CGGGTGTGTGTGTGTGTGT 60.744 57.895 0.00 0.00 0.00 3.72
4551 7884 1.800032 GGGTGTGTGTGTGTGTGTG 59.200 57.895 0.00 0.00 0.00 3.82
4552 7885 0.958382 GGGTGTGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
4553 7886 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
4554 7887 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4555 7888 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4556 7889 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
4557 7890 0.035458 TGTGTGTGTGTGTGTGTGGA 59.965 50.000 0.00 0.00 0.00 4.02
4558 7891 0.726827 GTGTGTGTGTGTGTGTGGAG 59.273 55.000 0.00 0.00 0.00 3.86
4559 7892 0.392327 TGTGTGTGTGTGTGTGGAGG 60.392 55.000 0.00 0.00 0.00 4.30
4560 7893 1.095228 GTGTGTGTGTGTGTGGAGGG 61.095 60.000 0.00 0.00 0.00 4.30
4561 7894 1.525995 GTGTGTGTGTGTGGAGGGG 60.526 63.158 0.00 0.00 0.00 4.79
4562 7895 2.113139 GTGTGTGTGTGGAGGGGG 59.887 66.667 0.00 0.00 0.00 5.40
4579 7912 2.358322 GGGGGCTCCGATTTCATTAA 57.642 50.000 0.00 0.00 0.00 1.40
4580 7913 1.954382 GGGGGCTCCGATTTCATTAAC 59.046 52.381 0.00 0.00 0.00 2.01
4581 7914 1.602377 GGGGCTCCGATTTCATTAACG 59.398 52.381 0.00 0.00 0.00 3.18
4582 7915 2.557317 GGGCTCCGATTTCATTAACGA 58.443 47.619 0.00 0.00 0.00 3.85
4583 7916 2.940410 GGGCTCCGATTTCATTAACGAA 59.060 45.455 0.00 0.00 0.00 3.85
4584 7917 3.002348 GGGCTCCGATTTCATTAACGAAG 59.998 47.826 0.00 0.00 0.00 3.79
4585 7918 3.002348 GGCTCCGATTTCATTAACGAAGG 59.998 47.826 0.00 0.00 0.00 3.46
4586 7919 3.546218 GCTCCGATTTCATTAACGAAGGC 60.546 47.826 0.00 0.00 0.00 4.35
4587 7920 3.601435 TCCGATTTCATTAACGAAGGCA 58.399 40.909 0.00 0.00 0.00 4.75
4588 7921 4.196193 TCCGATTTCATTAACGAAGGCAT 58.804 39.130 0.00 0.00 0.00 4.40
4589 7922 4.272504 TCCGATTTCATTAACGAAGGCATC 59.727 41.667 0.00 0.00 0.00 3.91
4590 7923 4.035091 CCGATTTCATTAACGAAGGCATCA 59.965 41.667 0.00 0.00 0.00 3.07
4591 7924 5.448496 CCGATTTCATTAACGAAGGCATCAA 60.448 40.000 0.00 0.00 0.00 2.57
4592 7925 5.678483 CGATTTCATTAACGAAGGCATCAAG 59.322 40.000 0.00 0.00 0.00 3.02
4593 7926 5.957842 TTTCATTAACGAAGGCATCAAGT 57.042 34.783 0.00 0.00 0.00 3.16
4594 7927 5.545658 TTCATTAACGAAGGCATCAAGTC 57.454 39.130 0.00 0.00 0.00 3.01
4595 7928 4.832248 TCATTAACGAAGGCATCAAGTCT 58.168 39.130 0.00 0.00 0.00 3.24
4596 7929 5.972935 TCATTAACGAAGGCATCAAGTCTA 58.027 37.500 0.00 0.00 0.00 2.59
4597 7930 6.403049 TCATTAACGAAGGCATCAAGTCTAA 58.597 36.000 0.00 0.00 0.00 2.10
4598 7931 7.047891 TCATTAACGAAGGCATCAAGTCTAAT 58.952 34.615 0.00 0.00 0.00 1.73
4599 7932 7.552687 TCATTAACGAAGGCATCAAGTCTAATT 59.447 33.333 0.00 0.00 0.00 1.40
4600 7933 8.826710 CATTAACGAAGGCATCAAGTCTAATTA 58.173 33.333 0.00 0.00 0.00 1.40
4601 7934 8.780846 TTAACGAAGGCATCAAGTCTAATTAA 57.219 30.769 0.00 0.00 0.00 1.40
4602 7935 6.910536 ACGAAGGCATCAAGTCTAATTAAG 57.089 37.500 0.00 0.00 0.00 1.85
4603 7936 6.407202 ACGAAGGCATCAAGTCTAATTAAGT 58.593 36.000 0.00 0.00 0.00 2.24
4604 7937 6.879458 ACGAAGGCATCAAGTCTAATTAAGTT 59.121 34.615 0.00 0.00 0.00 2.66
4605 7938 7.390718 ACGAAGGCATCAAGTCTAATTAAGTTT 59.609 33.333 0.00 0.00 0.00 2.66
4606 7939 8.237267 CGAAGGCATCAAGTCTAATTAAGTTTT 58.763 33.333 0.00 0.00 0.00 2.43
4609 7942 9.178758 AGGCATCAAGTCTAATTAAGTTTTAGG 57.821 33.333 0.00 0.00 0.00 2.69
4610 7943 9.174166 GGCATCAAGTCTAATTAAGTTTTAGGA 57.826 33.333 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.696832 CGACCGGCTTTAGCTTCAGC 61.697 60.000 0.00 8.07 41.70 4.26
1 2 0.389948 ACGACCGGCTTTAGCTTCAG 60.390 55.000 0.00 0.00 41.70 3.02
2 3 0.389426 GACGACCGGCTTTAGCTTCA 60.389 55.000 0.00 0.00 41.70 3.02
3 4 0.389426 TGACGACCGGCTTTAGCTTC 60.389 55.000 0.00 0.00 41.70 3.86
4 5 0.389948 CTGACGACCGGCTTTAGCTT 60.390 55.000 0.00 0.00 41.70 3.74
5 6 1.215647 CTGACGACCGGCTTTAGCT 59.784 57.895 0.00 0.00 41.70 3.32
6 7 1.080025 ACTGACGACCGGCTTTAGC 60.080 57.895 0.00 0.00 41.14 3.09
7 8 0.736325 CCACTGACGACCGGCTTTAG 60.736 60.000 0.00 0.00 0.00 1.85
8 9 1.180456 TCCACTGACGACCGGCTTTA 61.180 55.000 0.00 0.00 0.00 1.85
9 10 2.030562 CCACTGACGACCGGCTTT 59.969 61.111 0.00 0.00 0.00 3.51
10 11 2.035237 TTTCCACTGACGACCGGCTT 62.035 55.000 0.00 0.00 0.00 4.35
11 12 2.504274 TTTCCACTGACGACCGGCT 61.504 57.895 0.00 0.00 0.00 5.52
12 13 2.029964 TTTCCACTGACGACCGGC 59.970 61.111 0.00 0.00 0.00 6.13
13 14 0.944311 CTGTTTCCACTGACGACCGG 60.944 60.000 0.00 0.00 0.00 5.28
14 15 1.557443 GCTGTTTCCACTGACGACCG 61.557 60.000 0.00 0.00 0.00 4.79
15 16 0.531974 TGCTGTTTCCACTGACGACC 60.532 55.000 0.00 0.00 0.00 4.79
16 17 1.295792 TTGCTGTTTCCACTGACGAC 58.704 50.000 0.00 0.00 0.00 4.34
17 18 2.143122 GATTGCTGTTTCCACTGACGA 58.857 47.619 0.00 0.00 0.00 4.20
18 19 1.136252 CGATTGCTGTTTCCACTGACG 60.136 52.381 0.00 0.00 0.00 4.35
19 20 1.873591 ACGATTGCTGTTTCCACTGAC 59.126 47.619 0.00 0.00 0.00 3.51
20 21 2.143122 GACGATTGCTGTTTCCACTGA 58.857 47.619 0.00 0.00 0.00 3.41
21 22 1.197721 GGACGATTGCTGTTTCCACTG 59.802 52.381 0.00 0.00 0.00 3.66
22 23 1.202758 TGGACGATTGCTGTTTCCACT 60.203 47.619 0.00 0.00 31.19 4.00
23 24 1.234821 TGGACGATTGCTGTTTCCAC 58.765 50.000 0.00 0.00 31.19 4.02
24 25 1.974265 TTGGACGATTGCTGTTTCCA 58.026 45.000 0.00 0.00 34.46 3.53
25 26 2.922335 GCTTTGGACGATTGCTGTTTCC 60.922 50.000 0.00 0.00 0.00 3.13
26 27 2.319472 GCTTTGGACGATTGCTGTTTC 58.681 47.619 0.00 0.00 0.00 2.78
27 28 1.000274 GGCTTTGGACGATTGCTGTTT 60.000 47.619 0.00 0.00 0.00 2.83
28 29 0.598065 GGCTTTGGACGATTGCTGTT 59.402 50.000 0.00 0.00 0.00 3.16
29 30 0.250901 AGGCTTTGGACGATTGCTGT 60.251 50.000 0.00 0.00 0.00 4.40
30 31 0.449388 GAGGCTTTGGACGATTGCTG 59.551 55.000 0.00 0.00 0.00 4.41
31 32 0.678048 GGAGGCTTTGGACGATTGCT 60.678 55.000 0.00 0.00 0.00 3.91
32 33 1.657751 GGGAGGCTTTGGACGATTGC 61.658 60.000 0.00 0.00 0.00 3.56
33 34 0.322456 TGGGAGGCTTTGGACGATTG 60.322 55.000 0.00 0.00 0.00 2.67
34 35 0.322546 GTGGGAGGCTTTGGACGATT 60.323 55.000 0.00 0.00 0.00 3.34
35 36 1.299976 GTGGGAGGCTTTGGACGAT 59.700 57.895 0.00 0.00 0.00 3.73
36 37 2.747686 GTGGGAGGCTTTGGACGA 59.252 61.111 0.00 0.00 0.00 4.20
37 38 2.359975 GGTGGGAGGCTTTGGACG 60.360 66.667 0.00 0.00 0.00 4.79
38 39 2.035783 GGGTGGGAGGCTTTGGAC 59.964 66.667 0.00 0.00 0.00 4.02
39 40 2.451493 TGGGTGGGAGGCTTTGGA 60.451 61.111 0.00 0.00 0.00 3.53
40 41 2.283173 GTGGGTGGGAGGCTTTGG 60.283 66.667 0.00 0.00 0.00 3.28
41 42 1.303643 GAGTGGGTGGGAGGCTTTG 60.304 63.158 0.00 0.00 0.00 2.77
42 43 1.360393 TTGAGTGGGTGGGAGGCTTT 61.360 55.000 0.00 0.00 0.00 3.51
43 44 1.360393 TTTGAGTGGGTGGGAGGCTT 61.360 55.000 0.00 0.00 0.00 4.35
44 45 1.142688 ATTTGAGTGGGTGGGAGGCT 61.143 55.000 0.00 0.00 0.00 4.58
45 46 0.681243 GATTTGAGTGGGTGGGAGGC 60.681 60.000 0.00 0.00 0.00 4.70
46 47 0.698238 TGATTTGAGTGGGTGGGAGG 59.302 55.000 0.00 0.00 0.00 4.30
47 48 2.814805 ATGATTTGAGTGGGTGGGAG 57.185 50.000 0.00 0.00 0.00 4.30
48 49 2.241176 GGTATGATTTGAGTGGGTGGGA 59.759 50.000 0.00 0.00 0.00 4.37
49 50 2.025416 TGGTATGATTTGAGTGGGTGGG 60.025 50.000 0.00 0.00 0.00 4.61
50 51 3.054434 TCTGGTATGATTTGAGTGGGTGG 60.054 47.826 0.00 0.00 0.00 4.61
51 52 4.220693 TCTGGTATGATTTGAGTGGGTG 57.779 45.455 0.00 0.00 0.00 4.61
52 53 4.141390 GGATCTGGTATGATTTGAGTGGGT 60.141 45.833 0.00 0.00 0.00 4.51
53 54 4.141413 TGGATCTGGTATGATTTGAGTGGG 60.141 45.833 0.00 0.00 0.00 4.61
54 55 5.039920 TGGATCTGGTATGATTTGAGTGG 57.960 43.478 0.00 0.00 0.00 4.00
55 56 5.007039 CGTTGGATCTGGTATGATTTGAGTG 59.993 44.000 0.00 0.00 0.00 3.51
56 57 5.104941 TCGTTGGATCTGGTATGATTTGAGT 60.105 40.000 0.00 0.00 0.00 3.41
57 58 5.359756 TCGTTGGATCTGGTATGATTTGAG 58.640 41.667 0.00 0.00 0.00 3.02
58 59 5.351948 TCGTTGGATCTGGTATGATTTGA 57.648 39.130 0.00 0.00 0.00 2.69
59 60 4.512944 CCTCGTTGGATCTGGTATGATTTG 59.487 45.833 0.00 0.00 38.35 2.32
60 61 4.708177 CCTCGTTGGATCTGGTATGATTT 58.292 43.478 0.00 0.00 38.35 2.17
61 62 3.495100 GCCTCGTTGGATCTGGTATGATT 60.495 47.826 0.00 0.00 38.35 2.57
62 63 2.037772 GCCTCGTTGGATCTGGTATGAT 59.962 50.000 0.00 0.00 38.35 2.45
63 64 1.412710 GCCTCGTTGGATCTGGTATGA 59.587 52.381 0.00 0.00 38.35 2.15
64 65 1.138859 TGCCTCGTTGGATCTGGTATG 59.861 52.381 0.00 0.00 38.35 2.39
65 66 1.139058 GTGCCTCGTTGGATCTGGTAT 59.861 52.381 0.00 0.00 38.35 2.73
66 67 0.535335 GTGCCTCGTTGGATCTGGTA 59.465 55.000 0.00 0.00 38.35 3.25
67 68 1.296715 GTGCCTCGTTGGATCTGGT 59.703 57.895 0.00 0.00 38.35 4.00
68 69 1.450312 GGTGCCTCGTTGGATCTGG 60.450 63.158 0.00 0.00 38.35 3.86
69 70 1.450312 GGGTGCCTCGTTGGATCTG 60.450 63.158 0.00 0.00 38.35 2.90
70 71 2.990479 GGGTGCCTCGTTGGATCT 59.010 61.111 0.00 0.00 38.35 2.75
71 72 2.511600 CGGGTGCCTCGTTGGATC 60.512 66.667 1.63 0.00 38.35 3.36
72 73 4.778143 GCGGGTGCCTCGTTGGAT 62.778 66.667 1.63 0.00 38.35 3.41
96 97 2.253414 CTTTTGGAACTAGCCGGCGC 62.253 60.000 23.20 9.25 0.00 6.53
97 98 1.794222 CTTTTGGAACTAGCCGGCG 59.206 57.895 23.20 10.77 0.00 6.46
98 99 0.960861 AGCTTTTGGAACTAGCCGGC 60.961 55.000 21.89 21.89 35.53 6.13
99 100 0.804989 CAGCTTTTGGAACTAGCCGG 59.195 55.000 0.00 0.00 35.53 6.13
100 101 0.169009 GCAGCTTTTGGAACTAGCCG 59.831 55.000 0.00 0.00 35.53 5.52
101 102 0.169009 CGCAGCTTTTGGAACTAGCC 59.831 55.000 0.00 0.00 35.53 3.93
102 103 1.156736 TCGCAGCTTTTGGAACTAGC 58.843 50.000 0.00 0.00 35.16 3.42
103 104 2.352960 GGATCGCAGCTTTTGGAACTAG 59.647 50.000 0.00 0.00 0.00 2.57
104 105 2.356135 GGATCGCAGCTTTTGGAACTA 58.644 47.619 0.00 0.00 0.00 2.24
105 106 1.168714 GGATCGCAGCTTTTGGAACT 58.831 50.000 0.00 0.00 0.00 3.01
106 107 0.171231 GGGATCGCAGCTTTTGGAAC 59.829 55.000 4.64 0.00 0.00 3.62
107 108 0.965363 GGGGATCGCAGCTTTTGGAA 60.965 55.000 12.32 0.00 0.00 3.53
108 109 1.378514 GGGGATCGCAGCTTTTGGA 60.379 57.895 12.32 0.00 0.00 3.53
109 110 1.379044 AGGGGATCGCAGCTTTTGG 60.379 57.895 12.32 0.00 0.00 3.28
110 111 0.393537 AGAGGGGATCGCAGCTTTTG 60.394 55.000 12.32 0.00 0.00 2.44
111 112 0.107459 GAGAGGGGATCGCAGCTTTT 60.107 55.000 12.32 0.00 0.00 2.27
112 113 1.267574 TGAGAGGGGATCGCAGCTTT 61.268 55.000 12.32 0.00 32.21 3.51
113 114 1.053264 ATGAGAGGGGATCGCAGCTT 61.053 55.000 12.32 0.00 41.32 3.74
114 115 1.459158 ATGAGAGGGGATCGCAGCT 60.459 57.895 12.32 7.66 41.32 4.24
115 116 1.005156 GATGAGAGGGGATCGCAGC 60.005 63.158 12.32 2.66 41.32 5.25
116 117 0.975135 ATGATGAGAGGGGATCGCAG 59.025 55.000 12.32 0.00 41.32 5.18
117 118 0.972134 GATGATGAGAGGGGATCGCA 59.028 55.000 12.32 0.00 42.28 5.10
118 119 0.248843 GGATGATGAGAGGGGATCGC 59.751 60.000 0.06 0.06 0.00 4.58
119 120 0.529833 CGGATGATGAGAGGGGATCG 59.470 60.000 0.00 0.00 0.00 3.69
120 121 0.248843 GCGGATGATGAGAGGGGATC 59.751 60.000 0.00 0.00 0.00 3.36
121 122 0.178909 AGCGGATGATGAGAGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
122 123 0.829602 GAGCGGATGATGAGAGGGGA 60.830 60.000 0.00 0.00 0.00 4.81
123 124 1.117749 TGAGCGGATGATGAGAGGGG 61.118 60.000 0.00 0.00 0.00 4.79
124 125 0.755079 TTGAGCGGATGATGAGAGGG 59.245 55.000 0.00 0.00 0.00 4.30
125 126 2.806818 CAATTGAGCGGATGATGAGAGG 59.193 50.000 0.00 0.00 0.00 3.69
126 127 3.464907 ACAATTGAGCGGATGATGAGAG 58.535 45.455 13.59 0.00 0.00 3.20
127 128 3.118665 TGACAATTGAGCGGATGATGAGA 60.119 43.478 13.59 0.00 0.00 3.27
128 129 3.200483 TGACAATTGAGCGGATGATGAG 58.800 45.455 13.59 0.00 0.00 2.90
129 130 3.264998 TGACAATTGAGCGGATGATGA 57.735 42.857 13.59 0.00 0.00 2.92
130 131 4.359971 TTTGACAATTGAGCGGATGATG 57.640 40.909 13.59 0.00 0.00 3.07
131 132 5.587388 AATTTGACAATTGAGCGGATGAT 57.413 34.783 13.59 0.00 30.89 2.45
132 133 5.389859 AAATTTGACAATTGAGCGGATGA 57.610 34.783 13.59 0.00 32.57 2.92
133 134 6.237648 GCTTAAATTTGACAATTGAGCGGATG 60.238 38.462 13.59 0.00 34.89 3.51
134 135 5.807011 GCTTAAATTTGACAATTGAGCGGAT 59.193 36.000 13.59 0.00 34.89 4.18
135 136 5.160641 GCTTAAATTTGACAATTGAGCGGA 58.839 37.500 13.59 0.00 34.89 5.54
136 137 4.327087 GGCTTAAATTTGACAATTGAGCGG 59.673 41.667 13.59 0.00 40.25 5.52
137 138 4.030529 CGGCTTAAATTTGACAATTGAGCG 59.969 41.667 13.59 0.80 40.25 5.03
138 139 5.160641 TCGGCTTAAATTTGACAATTGAGC 58.839 37.500 13.59 6.94 39.45 4.26
139 140 6.195244 CGATCGGCTTAAATTTGACAATTGAG 59.805 38.462 13.59 0.00 32.57 3.02
140 141 6.027131 CGATCGGCTTAAATTTGACAATTGA 58.973 36.000 13.59 0.00 32.57 2.57
141 142 5.275881 GCGATCGGCTTAAATTTGACAATTG 60.276 40.000 18.30 3.24 39.11 2.32
142 143 4.798387 GCGATCGGCTTAAATTTGACAATT 59.202 37.500 18.30 0.00 39.11 2.32
143 144 4.351192 GCGATCGGCTTAAATTTGACAAT 58.649 39.130 18.30 0.00 39.11 2.71
144 145 3.726486 CGCGATCGGCTTAAATTTGACAA 60.726 43.478 18.30 0.00 40.44 3.18
145 146 2.222931 CGCGATCGGCTTAAATTTGACA 60.223 45.455 18.30 0.00 40.44 3.58
146 147 2.029970 TCGCGATCGGCTTAAATTTGAC 59.970 45.455 18.30 0.00 40.44 3.18
147 148 2.272678 TCGCGATCGGCTTAAATTTGA 58.727 42.857 18.30 0.00 40.44 2.69
148 149 2.730183 TCGCGATCGGCTTAAATTTG 57.270 45.000 18.30 0.00 40.44 2.32
149 150 2.869801 TGATCGCGATCGGCTTAAATTT 59.130 40.909 36.05 7.17 40.63 1.82
150 151 2.476619 CTGATCGCGATCGGCTTAAATT 59.523 45.455 37.10 7.60 40.63 1.82
151 152 2.061773 CTGATCGCGATCGGCTTAAAT 58.938 47.619 37.10 8.17 40.63 1.40
152 153 1.487482 CTGATCGCGATCGGCTTAAA 58.513 50.000 37.10 20.78 40.63 1.52
153 154 3.179433 CTGATCGCGATCGGCTTAA 57.821 52.632 37.10 21.43 40.63 1.85
154 155 4.944249 CTGATCGCGATCGGCTTA 57.056 55.556 37.10 22.09 40.63 3.09
165 166 2.125552 TGGGTCAAGCGCTGATCG 60.126 61.111 12.58 0.00 35.83 3.69
166 167 2.109126 GGTGGGTCAAGCGCTGATC 61.109 63.158 12.58 11.23 36.14 2.92
167 168 2.045926 GGTGGGTCAAGCGCTGAT 60.046 61.111 12.58 0.00 36.14 2.90
168 169 4.329545 GGGTGGGTCAAGCGCTGA 62.330 66.667 12.58 8.22 0.00 4.26
169 170 4.641645 TGGGTGGGTCAAGCGCTG 62.642 66.667 12.58 5.47 0.00 5.18
170 171 3.429372 TTTGGGTGGGTCAAGCGCT 62.429 57.895 2.64 2.64 0.00 5.92
171 172 2.909965 TTTGGGTGGGTCAAGCGC 60.910 61.111 0.00 0.00 0.00 5.92
172 173 2.561037 GGTTTGGGTGGGTCAAGCG 61.561 63.158 0.00 0.00 0.00 4.68
173 174 2.207229 GGGTTTGGGTGGGTCAAGC 61.207 63.158 0.00 0.00 0.00 4.01
174 175 0.397816 TTGGGTTTGGGTGGGTCAAG 60.398 55.000 0.00 0.00 0.00 3.02
175 176 0.688087 GTTGGGTTTGGGTGGGTCAA 60.688 55.000 0.00 0.00 0.00 3.18
176 177 1.075896 GTTGGGTTTGGGTGGGTCA 60.076 57.895 0.00 0.00 0.00 4.02
177 178 1.835267 GGTTGGGTTTGGGTGGGTC 60.835 63.158 0.00 0.00 0.00 4.46
178 179 2.284151 GGTTGGGTTTGGGTGGGT 59.716 61.111 0.00 0.00 0.00 4.51
179 180 1.836604 CTGGTTGGGTTTGGGTGGG 60.837 63.158 0.00 0.00 0.00 4.61
180 181 0.827507 CTCTGGTTGGGTTTGGGTGG 60.828 60.000 0.00 0.00 0.00 4.61
181 182 0.184933 TCTCTGGTTGGGTTTGGGTG 59.815 55.000 0.00 0.00 0.00 4.61
182 183 0.478507 CTCTCTGGTTGGGTTTGGGT 59.521 55.000 0.00 0.00 0.00 4.51
183 184 0.251341 CCTCTCTGGTTGGGTTTGGG 60.251 60.000 0.00 0.00 0.00 4.12
184 185 0.251341 CCCTCTCTGGTTGGGTTTGG 60.251 60.000 0.00 0.00 36.32 3.28
185 186 0.895559 GCCCTCTCTGGTTGGGTTTG 60.896 60.000 0.00 0.00 42.77 2.93
186 187 1.460699 GCCCTCTCTGGTTGGGTTT 59.539 57.895 0.00 0.00 42.77 3.27
187 188 2.539081 GGCCCTCTCTGGTTGGGTT 61.539 63.158 0.00 0.00 42.77 4.11
188 189 2.936032 GGCCCTCTCTGGTTGGGT 60.936 66.667 0.00 0.00 42.77 4.51
189 190 3.732849 GGGCCCTCTCTGGTTGGG 61.733 72.222 17.04 0.00 43.62 4.12
190 191 3.732849 GGGGCCCTCTCTGGTTGG 61.733 72.222 24.38 0.00 0.00 3.77
191 192 3.732849 GGGGGCCCTCTCTGGTTG 61.733 72.222 24.38 0.00 0.00 3.77
203 204 4.678743 AAAGCTTGGGACGGGGGC 62.679 66.667 0.00 0.00 0.00 5.80
204 205 1.533033 AAAAAGCTTGGGACGGGGG 60.533 57.895 0.00 0.00 0.00 5.40
205 206 4.191243 AAAAAGCTTGGGACGGGG 57.809 55.556 0.00 0.00 0.00 5.73
238 239 3.485431 CTGCCGCTCGAGCTTGTG 61.485 66.667 32.88 18.29 39.32 3.33
239 240 3.639541 CTCTGCCGCTCGAGCTTGT 62.640 63.158 32.88 0.00 39.32 3.16
331 332 1.369091 CGAAATAAGTGCGCCTGCCT 61.369 55.000 4.18 0.00 41.78 4.75
428 429 4.552365 ACGCTCGATGGCATGGGG 62.552 66.667 3.81 4.39 0.00 4.96
452 453 1.081641 CCGTTTTCAGCAGCAGCAG 60.082 57.895 3.17 0.00 45.49 4.24
456 457 2.250939 CGACCCGTTTTCAGCAGCA 61.251 57.895 0.00 0.00 0.00 4.41
483 484 6.292168 CCGTTGCTTTATTTACTCGATCGATT 60.292 38.462 19.78 16.01 0.00 3.34
504 509 5.727434 CCAGGTTGAGTAGTAATTACCGTT 58.273 41.667 12.05 0.00 32.37 4.44
517 522 1.513158 CTCGATCGCCAGGTTGAGT 59.487 57.895 11.09 0.00 0.00 3.41
518 523 1.227089 CCTCGATCGCCAGGTTGAG 60.227 63.158 11.09 0.00 0.00 3.02
519 524 2.892640 CCTCGATCGCCAGGTTGA 59.107 61.111 11.09 0.00 0.00 3.18
564 569 2.183300 GTGTATCTCGCCACGCCA 59.817 61.111 0.00 0.00 0.00 5.69
568 573 2.585247 GCCCGTGTATCTCGCCAC 60.585 66.667 0.00 0.00 0.00 5.01
595 600 2.819595 CCAACCGCCTGTCCATCG 60.820 66.667 0.00 0.00 0.00 3.84
603 608 1.903404 CAAAAGAGCCCAACCGCCT 60.903 57.895 0.00 0.00 0.00 5.52
606 611 1.172180 TGCTCAAAAGAGCCCAACCG 61.172 55.000 14.22 0.00 46.96 4.44
654 659 0.728466 GGTCGTCACTGCTACGTGTC 60.728 60.000 0.00 0.00 41.08 3.67
713 728 0.546598 CTGGAACATCCTGGTACCCC 59.453 60.000 10.07 0.62 38.20 4.95
720 735 1.751927 GCTGGGCTGGAACATCCTG 60.752 63.158 0.00 0.00 45.25 3.86
738 753 2.821366 GATGCGTGTGGAGCTGGG 60.821 66.667 0.00 0.00 35.28 4.45
739 754 3.190849 CGATGCGTGTGGAGCTGG 61.191 66.667 0.00 0.00 35.28 4.85
740 755 3.857854 GCGATGCGTGTGGAGCTG 61.858 66.667 0.00 0.00 35.28 4.24
757 772 1.338107 TGCTACTATGATCGGTGGGG 58.662 55.000 0.00 0.00 0.00 4.96
758 773 2.562738 TCATGCTACTATGATCGGTGGG 59.437 50.000 0.00 0.00 32.39 4.61
759 774 3.942130 TCATGCTACTATGATCGGTGG 57.058 47.619 0.00 0.00 32.39 4.61
760 775 4.861462 GTCATCATGCTACTATGATCGGTG 59.139 45.833 0.00 0.00 43.93 4.94
761 776 4.379918 CGTCATCATGCTACTATGATCGGT 60.380 45.833 0.00 0.00 43.93 4.69
796 819 1.007734 GAAGACTGTGCGACGGTGA 60.008 57.895 5.63 0.00 37.93 4.02
798 821 2.338984 GGAAGACTGTGCGACGGT 59.661 61.111 0.00 1.07 41.12 4.83
803 837 3.587797 TTTACTAGGGAAGACTGTGCG 57.412 47.619 0.00 0.00 0.00 5.34
807 841 3.858247 CGGGTTTTACTAGGGAAGACTG 58.142 50.000 0.00 0.00 0.00 3.51
815 849 1.153309 CCCCGCGGGTTTTACTAGG 60.153 63.158 40.52 19.70 38.25 3.02
885 920 6.214399 CGTTTATATTAGAAGAAGAGCGGGT 58.786 40.000 0.00 0.00 0.00 5.28
897 932 5.981315 CGGAAGTCAAGCCGTTTATATTAGA 59.019 40.000 0.00 0.00 42.49 2.10
898 933 6.211664 CGGAAGTCAAGCCGTTTATATTAG 57.788 41.667 0.00 0.00 42.49 1.73
920 955 3.480225 CTACGGCCCCGCTAGAACG 62.480 68.421 6.63 0.00 44.19 3.95
957 992 0.104671 GCTCTCTCCCTAGCTGCAAG 59.895 60.000 1.02 0.00 35.80 4.01
976 1011 2.126307 CGCCTCACCACTCACTCG 60.126 66.667 0.00 0.00 0.00 4.18
986 1021 1.373570 CTCCATTTCCTTCGCCTCAC 58.626 55.000 0.00 0.00 0.00 3.51
987 1022 0.253044 CCTCCATTTCCTTCGCCTCA 59.747 55.000 0.00 0.00 0.00 3.86
988 1023 1.098129 GCCTCCATTTCCTTCGCCTC 61.098 60.000 0.00 0.00 0.00 4.70
991 1026 2.472909 CCGCCTCCATTTCCTTCGC 61.473 63.158 0.00 0.00 0.00 4.70
992 1027 2.472909 GCCGCCTCCATTTCCTTCG 61.473 63.158 0.00 0.00 0.00 3.79
993 1028 2.472909 CGCCGCCTCCATTTCCTTC 61.473 63.158 0.00 0.00 0.00 3.46
994 1029 2.438434 CGCCGCCTCCATTTCCTT 60.438 61.111 0.00 0.00 0.00 3.36
995 1030 4.489771 CCGCCGCCTCCATTTCCT 62.490 66.667 0.00 0.00 0.00 3.36
1213 1253 4.344865 GAGCGGCTGGTGGGGAAA 62.345 66.667 7.50 0.00 0.00 3.13
1248 1288 1.527034 GTGCAGATGGAAGAAGTGCA 58.473 50.000 0.00 0.00 41.72 4.57
1253 1293 3.265221 AGATGAAGGTGCAGATGGAAGAA 59.735 43.478 0.00 0.00 0.00 2.52
1267 1307 1.153289 CCAGGGACGCAGATGAAGG 60.153 63.158 0.00 0.00 0.00 3.46
1272 1312 0.689080 AGATGACCAGGGACGCAGAT 60.689 55.000 0.00 0.00 0.00 2.90
1280 1320 2.420687 GGCTAGAAACAGATGACCAGGG 60.421 54.545 0.00 0.00 0.00 4.45
1311 1355 3.611517 CGACAAAAATGGAGCATCGATC 58.388 45.455 0.00 0.00 29.90 3.69
1312 1356 2.223340 GCGACAAAAATGGAGCATCGAT 60.223 45.455 0.00 0.00 33.87 3.59
1313 1357 1.130373 GCGACAAAAATGGAGCATCGA 59.870 47.619 0.00 0.00 34.37 3.59
1317 1361 1.578926 CGGCGACAAAAATGGAGCA 59.421 52.632 0.00 0.00 0.00 4.26
1319 1363 1.511887 CGCGGCGACAAAAATGGAG 60.512 57.895 19.16 0.00 0.00 3.86
1324 1368 0.110419 CATCTTCGCGGCGACAAAAA 60.110 50.000 26.40 9.20 34.89 1.94
1333 1377 0.460109 TGTCCATCACATCTTCGCGG 60.460 55.000 6.13 0.00 0.00 6.46
1372 1416 2.439156 AGAGCGGGCATGCCTTTC 60.439 61.111 34.70 26.57 36.10 2.62
1384 1428 2.538437 CAAGACCATGAGAAGAGAGCG 58.462 52.381 0.00 0.00 0.00 5.03
1396 1440 1.065126 GCCTACCTCTTGCAAGACCAT 60.065 52.381 25.16 14.99 0.00 3.55
1422 1470 2.277084 GGAGCGTGTCCAATAAACGAT 58.723 47.619 0.00 0.00 46.10 3.73
1433 1481 1.842546 GAAATACGTACGGAGCGTGTC 59.157 52.381 21.06 0.00 42.87 3.67
1440 1488 2.159531 CCACACGAGAAATACGTACGGA 60.160 50.000 21.06 12.56 42.07 4.69
1452 1500 2.823747 AGCACATTACTACCACACGAGA 59.176 45.455 0.00 0.00 0.00 4.04
1453 1501 3.179830 GAGCACATTACTACCACACGAG 58.820 50.000 0.00 0.00 0.00 4.18
1454 1502 2.559231 TGAGCACATTACTACCACACGA 59.441 45.455 0.00 0.00 0.00 4.35
1455 1503 2.954316 TGAGCACATTACTACCACACG 58.046 47.619 0.00 0.00 0.00 4.49
1456 1504 3.623060 CCATGAGCACATTACTACCACAC 59.377 47.826 0.00 0.00 34.15 3.82
1457 1505 3.263170 ACCATGAGCACATTACTACCACA 59.737 43.478 0.00 0.00 34.15 4.17
1458 1506 3.871594 GACCATGAGCACATTACTACCAC 59.128 47.826 0.00 0.00 34.15 4.16
1459 1507 3.774766 AGACCATGAGCACATTACTACCA 59.225 43.478 0.00 0.00 34.15 3.25
1460 1508 4.408182 AGACCATGAGCACATTACTACC 57.592 45.455 0.00 0.00 34.15 3.18
1461 1509 4.034510 GCAAGACCATGAGCACATTACTAC 59.965 45.833 0.00 0.00 34.15 2.73
1462 1510 4.191544 GCAAGACCATGAGCACATTACTA 58.808 43.478 0.00 0.00 34.15 1.82
1463 1511 3.012518 GCAAGACCATGAGCACATTACT 58.987 45.455 0.00 0.00 34.15 2.24
1464 1512 2.749076 TGCAAGACCATGAGCACATTAC 59.251 45.455 0.00 0.00 34.15 1.89
1465 1513 3.070476 TGCAAGACCATGAGCACATTA 57.930 42.857 0.00 0.00 34.15 1.90
1471 1519 2.029649 ACACAATTGCAAGACCATGAGC 60.030 45.455 4.94 0.00 0.00 4.26
1480 1528 7.648908 TCAATCAAAGAGTAACACAATTGCAAG 59.351 33.333 4.94 0.00 0.00 4.01
1486 1534 8.352942 GTTCCTTCAATCAAAGAGTAACACAAT 58.647 33.333 0.00 0.00 0.00 2.71
1491 1539 8.603242 TGTAGTTCCTTCAATCAAAGAGTAAC 57.397 34.615 0.00 0.00 0.00 2.50
1494 1542 7.509546 TCTTGTAGTTCCTTCAATCAAAGAGT 58.490 34.615 0.00 0.00 0.00 3.24
1630 1679 4.125703 AGCGATGGAGAGTGATGATTTTC 58.874 43.478 0.00 0.00 0.00 2.29
1632 1681 3.834489 AGCGATGGAGAGTGATGATTT 57.166 42.857 0.00 0.00 0.00 2.17
1633 1682 3.834489 AAGCGATGGAGAGTGATGATT 57.166 42.857 0.00 0.00 0.00 2.57
1636 1685 3.126831 GGTTAAGCGATGGAGAGTGATG 58.873 50.000 0.00 0.00 0.00 3.07
1640 1692 1.135083 CGTGGTTAAGCGATGGAGAGT 60.135 52.381 0.00 0.00 0.00 3.24
1650 1702 1.352114 TACATGCGTCGTGGTTAAGC 58.648 50.000 0.00 0.00 0.00 3.09
1655 1707 2.157834 TCTTTTACATGCGTCGTGGT 57.842 45.000 0.00 0.00 0.00 4.16
1657 1709 3.867665 TGTTTCTTTTACATGCGTCGTG 58.132 40.909 0.00 0.00 0.00 4.35
1658 1710 4.034742 AGTTGTTTCTTTTACATGCGTCGT 59.965 37.500 0.00 0.00 0.00 4.34
1660 1712 6.199393 AGAAGTTGTTTCTTTTACATGCGTC 58.801 36.000 0.00 0.00 43.68 5.19
1661 1713 6.131544 AGAAGTTGTTTCTTTTACATGCGT 57.868 33.333 0.00 0.00 43.68 5.24
1674 1769 6.357367 TGCTAGGAAGAAGAAGAAGTTGTTT 58.643 36.000 0.00 0.00 0.00 2.83
1677 1772 6.091986 GTCATGCTAGGAAGAAGAAGAAGTTG 59.908 42.308 0.00 0.00 0.00 3.16
1776 1875 2.167487 GGACAGAGAGAGGCGAAAAGAT 59.833 50.000 0.00 0.00 0.00 2.40
1812 1911 4.515191 TCTCTTGGACCATTCGTTTGAAAG 59.485 41.667 0.00 0.00 37.71 2.62
1851 1950 0.602905 GCTGCTGTGGGTACTTCGTT 60.603 55.000 0.00 0.00 0.00 3.85
1852 1951 1.004918 GCTGCTGTGGGTACTTCGT 60.005 57.895 0.00 0.00 0.00 3.85
1853 1952 0.320771 AAGCTGCTGTGGGTACTTCG 60.321 55.000 1.35 0.00 0.00 3.79
1854 1953 1.002544 AGAAGCTGCTGTGGGTACTTC 59.997 52.381 1.35 0.00 35.00 3.01
1862 1965 2.175878 AGGTGTAAGAAGCTGCTGTG 57.824 50.000 1.35 0.00 0.00 3.66
1942 2045 2.159028 AGGAGCAGGAATTCTAGCGTTC 60.159 50.000 5.23 4.76 0.00 3.95
2036 2140 7.081349 TGCACATAAATTCAGGTTTTACTTCG 58.919 34.615 0.00 0.00 0.00 3.79
2057 2161 2.918571 TGCTGTACTTCTGCTGCAC 58.081 52.632 0.00 0.00 40.79 4.57
2058 2162 0.603707 GGTGCTGTACTTCTGCTGCA 60.604 55.000 0.88 0.88 40.79 4.41
2077 2181 0.319211 TTAGTTGGACAGTGACCGCG 60.319 55.000 0.00 0.00 0.00 6.46
2079 2183 4.377022 CGAAAATTAGTTGGACAGTGACCG 60.377 45.833 7.14 0.00 0.00 4.79
2107 2216 3.197790 CAACGGCTGGCGATCAGG 61.198 66.667 30.58 10.05 43.54 3.86
2207 2316 2.484062 CCGGTAGGCGTCCACGTAT 61.484 63.158 0.00 0.00 42.22 3.06
2588 2697 3.878519 GCCTCCTCCTCGTCGTCG 61.879 72.222 0.00 0.00 38.55 5.12
2643 2755 2.584873 TACTCCTTCTCCTCCGCCCC 62.585 65.000 0.00 0.00 0.00 5.80
2769 2917 4.427312 GAGGATTAATGGTTGCAAGCAAG 58.573 43.478 32.60 0.00 40.14 4.01
2770 2918 3.195396 GGAGGATTAATGGTTGCAAGCAA 59.805 43.478 32.60 18.60 40.14 3.91
2771 2919 2.760092 GGAGGATTAATGGTTGCAAGCA 59.240 45.455 31.34 31.34 41.10 3.91
2772 2920 3.026694 AGGAGGATTAATGGTTGCAAGC 58.973 45.455 21.51 21.51 0.00 4.01
2783 2931 3.841643 GTGACGAACGAAGGAGGATTAA 58.158 45.455 0.14 0.00 0.00 1.40
2842 2990 2.638556 AACTACTGCAGCTCACTACG 57.361 50.000 15.27 0.00 0.00 3.51
2843 2991 4.307432 TCAAAACTACTGCAGCTCACTAC 58.693 43.478 15.27 0.00 0.00 2.73
2844 2992 4.600692 TCAAAACTACTGCAGCTCACTA 57.399 40.909 15.27 0.00 0.00 2.74
2845 2993 3.475566 TCAAAACTACTGCAGCTCACT 57.524 42.857 15.27 0.00 0.00 3.41
2879 3027 4.256920 AGATTATGGGAACTCATATGCGC 58.743 43.478 0.00 0.00 30.69 6.09
2932 3080 5.447683 CGTTCACATGACATGACCCTAATTG 60.448 44.000 22.19 7.20 0.00 2.32
2991 3140 1.808411 TCATCTTTTGACCTCCGTGC 58.192 50.000 0.00 0.00 0.00 5.34
3025 3174 1.602377 CTGTGTCGTTTTTCCAGGACC 59.398 52.381 0.00 0.00 31.71 4.46
3032 3181 5.454554 GCTTTTTCCTACTGTGTCGTTTTTC 59.545 40.000 0.00 0.00 0.00 2.29
3038 3187 4.272504 TGAAAGCTTTTTCCTACTGTGTCG 59.727 41.667 14.05 0.00 0.00 4.35
3041 3190 4.919754 GCATGAAAGCTTTTTCCTACTGTG 59.080 41.667 14.05 4.48 0.00 3.66
3043 3192 5.125100 TGCATGAAAGCTTTTTCCTACTG 57.875 39.130 14.05 4.97 34.99 2.74
3044 3193 5.717119 CATGCATGAAAGCTTTTTCCTACT 58.283 37.500 22.59 0.00 34.99 2.57
3045 3194 4.328169 GCATGCATGAAAGCTTTTTCCTAC 59.672 41.667 30.64 2.47 34.99 3.18
3046 3195 4.021280 TGCATGCATGAAAGCTTTTTCCTA 60.021 37.500 30.64 1.14 34.99 2.94
3047 3196 3.244284 TGCATGCATGAAAGCTTTTTCCT 60.244 39.130 30.64 0.00 34.99 3.36
3048 3197 3.068560 TGCATGCATGAAAGCTTTTTCC 58.931 40.909 30.64 8.14 34.99 3.13
3049 3198 4.939509 ATGCATGCATGAAAGCTTTTTC 57.060 36.364 31.74 8.66 35.03 2.29
3087 3245 1.747325 AATGTGTTGGCGCTTTGGCT 61.747 50.000 7.64 0.00 45.14 4.75
3101 3259 2.104967 ACCAATGGATCCTGCAATGTG 58.895 47.619 14.23 0.62 0.00 3.21
3102 3260 2.498481 CAACCAATGGATCCTGCAATGT 59.502 45.455 14.23 0.00 0.00 2.71
3122 3280 1.822990 CCTAGCTAGAACCGTGAACCA 59.177 52.381 22.70 0.00 0.00 3.67
3123 3281 2.097825 TCCTAGCTAGAACCGTGAACC 58.902 52.381 22.70 0.00 0.00 3.62
3146 3304 2.534349 CGTACTTGCAATGGTAGTAGCG 59.466 50.000 0.00 1.90 0.00 4.26
3147 3305 3.518590 ACGTACTTGCAATGGTAGTAGC 58.481 45.455 0.00 0.00 0.00 3.58
3148 3306 4.731961 CGTACGTACTTGCAATGGTAGTAG 59.268 45.833 22.55 0.00 0.00 2.57
3180 3486 2.636893 GAGGATCCATGGAGCAGTACAT 59.363 50.000 30.03 6.10 31.28 2.29
3183 3489 1.332195 CGAGGATCCATGGAGCAGTA 58.668 55.000 30.03 1.09 31.28 2.74
3198 3504 4.619227 ACCACACCGCCAACGAGG 62.619 66.667 0.00 0.00 43.93 4.63
3270 3579 4.731503 GAACACTGCAGCAGCGCG 62.732 66.667 23.05 13.44 46.23 6.86
3271 3580 4.395583 GGAACACTGCAGCAGCGC 62.396 66.667 23.05 0.00 46.23 5.92
3335 3644 1.095228 TTTTGCCTGGCGATCGATCC 61.095 55.000 21.57 12.28 0.00 3.36
3398 5107 1.998315 CACAGTGATGACAGCTACTGC 59.002 52.381 17.49 0.00 43.18 4.40
3479 5188 0.691078 AAGCCTCGAGCCCCTGAATA 60.691 55.000 6.99 0.00 45.47 1.75
3480 5189 1.997874 AAGCCTCGAGCCCCTGAAT 60.998 57.895 6.99 0.00 45.47 2.57
3481 5190 2.607750 AAGCCTCGAGCCCCTGAA 60.608 61.111 6.99 0.00 45.47 3.02
3535 5244 3.610669 CTCCTCCCCTCCGATGCG 61.611 72.222 0.00 0.00 0.00 4.73
3537 5246 2.525381 CCCTCCTCCCCTCCGATG 60.525 72.222 0.00 0.00 0.00 3.84
3603 5312 3.279875 GCGCCGGCCTATTTCTGG 61.280 66.667 23.46 4.03 0.00 3.86
3636 5349 7.888250 TCTGTCAGAAGCAGAGATTAATCTA 57.112 36.000 17.94 0.00 37.98 1.98
3653 5366 6.920758 GGAACTATTACTACATGCTCTGTCAG 59.079 42.308 0.00 0.00 39.39 3.51
3654 5367 6.379988 TGGAACTATTACTACATGCTCTGTCA 59.620 38.462 0.00 0.00 39.39 3.58
3656 5369 6.381420 ACTGGAACTATTACTACATGCTCTGT 59.619 38.462 0.00 0.00 42.13 3.41
3678 5391 3.319137 TGCTAAACACTCCTGCTACTG 57.681 47.619 0.00 0.00 0.00 2.74
3773 5492 1.585267 TTAAGTGCCATGCGTGCTGG 61.585 55.000 0.00 6.12 36.81 4.85
3842 5562 1.497991 CATTGCTACCGGTCCGTATG 58.502 55.000 12.40 7.85 0.00 2.39
3873 5593 3.274586 CACGCCGGGCATGATCAG 61.275 66.667 20.71 2.83 0.00 2.90
3886 5606 1.128692 GTGTCAGAAATACAGGCACGC 59.871 52.381 0.00 0.00 31.67 5.34
3923 5643 1.322442 GTTACGTAGTATCGGGGCCT 58.678 55.000 0.84 0.00 45.21 5.19
3924 5644 1.032014 TGTTACGTAGTATCGGGGCC 58.968 55.000 0.00 0.00 45.21 5.80
3925 5645 2.159254 TGTTGTTACGTAGTATCGGGGC 60.159 50.000 0.00 0.00 45.21 5.80
3926 5646 3.781079 TGTTGTTACGTAGTATCGGGG 57.219 47.619 0.00 0.00 45.21 5.73
3927 5647 7.584108 TGTATATGTTGTTACGTAGTATCGGG 58.416 38.462 0.00 0.00 45.21 5.14
3928 5648 7.269937 GCTGTATATGTTGTTACGTAGTATCGG 59.730 40.741 0.00 0.00 45.21 4.18
3929 5649 7.269937 GGCTGTATATGTTGTTACGTAGTATCG 59.730 40.741 0.00 0.00 45.21 2.92
3938 5658 4.690122 AGTCCGGCTGTATATGTTGTTAC 58.310 43.478 0.00 0.00 0.00 2.50
3948 5668 7.336396 AGTTAATTTAAGAAGTCCGGCTGTAT 58.664 34.615 0.00 0.00 0.00 2.29
3954 5674 8.943909 ATCAGTAGTTAATTTAAGAAGTCCGG 57.056 34.615 0.00 0.00 0.00 5.14
3970 5690 5.506708 GGATTTGGTTGGGTATCAGTAGTT 58.493 41.667 0.00 0.00 0.00 2.24
3973 5693 4.116113 AGGGATTTGGTTGGGTATCAGTA 58.884 43.478 0.00 0.00 0.00 2.74
3980 5700 4.140782 AGACTTTAAGGGATTTGGTTGGGT 60.141 41.667 0.00 0.00 0.00 4.51
3981 5701 4.416516 AGACTTTAAGGGATTTGGTTGGG 58.583 43.478 0.00 0.00 0.00 4.12
3982 5702 4.462834 GGAGACTTTAAGGGATTTGGTTGG 59.537 45.833 0.00 0.00 0.00 3.77
3983 5703 5.325239 AGGAGACTTTAAGGGATTTGGTTG 58.675 41.667 0.00 0.00 37.44 3.77
3984 5704 5.600669 AGGAGACTTTAAGGGATTTGGTT 57.399 39.130 0.00 0.00 37.44 3.67
3993 5713 7.627300 GCTTCTGCATTTAAGGAGACTTTAAGG 60.627 40.741 0.00 0.00 41.70 2.69
3994 5714 7.094634 TGCTTCTGCATTTAAGGAGACTTTAAG 60.095 37.037 0.00 0.00 46.91 1.85
3995 5715 6.714810 TGCTTCTGCATTTAAGGAGACTTTAA 59.285 34.615 0.00 0.00 46.91 1.52
3996 5716 6.237901 TGCTTCTGCATTTAAGGAGACTTTA 58.762 36.000 0.00 0.00 46.91 1.85
3997 5717 5.072741 TGCTTCTGCATTTAAGGAGACTTT 58.927 37.500 0.00 0.00 46.91 2.66
3999 5719 4.292186 TGCTTCTGCATTTAAGGAGACT 57.708 40.909 0.00 0.00 45.31 3.24
4025 5745 2.111613 TGAGGGGTTTGGTTGGATCAAT 59.888 45.455 0.00 0.00 0.00 2.57
4030 5750 1.289530 ACTTTGAGGGGTTTGGTTGGA 59.710 47.619 0.00 0.00 0.00 3.53
4053 5789 3.500680 GCGAACAGTCCCAACATTTAAGA 59.499 43.478 0.00 0.00 0.00 2.10
4062 6057 1.070786 GAGTGGCGAACAGTCCCAA 59.929 57.895 4.54 0.00 42.57 4.12
4103 6120 8.240682 GTCACTCCTCATACTCATCACATATAC 58.759 40.741 0.00 0.00 0.00 1.47
4105 7427 6.210385 GGTCACTCCTCATACTCATCACATAT 59.790 42.308 0.00 0.00 0.00 1.78
4110 7432 2.952310 CGGTCACTCCTCATACTCATCA 59.048 50.000 0.00 0.00 0.00 3.07
4144 7466 2.183300 GCGGACGCATGACCACTA 59.817 61.111 12.31 0.00 41.49 2.74
4159 7481 1.308998 GGGTTCAATCCTATGTGGCG 58.691 55.000 0.00 0.00 35.26 5.69
4218 7540 7.724490 TGTGATGAATAAAGGAGAGAGAAGA 57.276 36.000 0.00 0.00 0.00 2.87
4219 7541 7.041916 GCATGTGATGAATAAAGGAGAGAGAAG 60.042 40.741 0.00 0.00 0.00 2.85
4220 7542 6.765036 GCATGTGATGAATAAAGGAGAGAGAA 59.235 38.462 0.00 0.00 0.00 2.87
4221 7543 6.126968 TGCATGTGATGAATAAAGGAGAGAGA 60.127 38.462 0.00 0.00 0.00 3.10
4222 7544 6.053650 TGCATGTGATGAATAAAGGAGAGAG 58.946 40.000 0.00 0.00 0.00 3.20
4223 7545 5.993055 TGCATGTGATGAATAAAGGAGAGA 58.007 37.500 0.00 0.00 0.00 3.10
4224 7546 6.879276 ATGCATGTGATGAATAAAGGAGAG 57.121 37.500 0.00 0.00 0.00 3.20
4228 7560 7.222031 CAGTCAAATGCATGTGATGAATAAAGG 59.778 37.037 22.29 1.99 0.00 3.11
4232 7564 5.887035 TCCAGTCAAATGCATGTGATGAATA 59.113 36.000 22.29 5.47 0.00 1.75
4235 7567 3.441222 GTCCAGTCAAATGCATGTGATGA 59.559 43.478 22.29 15.67 0.00 2.92
4236 7568 3.191791 TGTCCAGTCAAATGCATGTGATG 59.808 43.478 22.29 18.70 0.00 3.07
4278 7610 3.883830 ATCTGTCCACTCAGTCATGTC 57.116 47.619 0.00 0.00 36.85 3.06
4284 7616 5.529289 TCCCTATTTATCTGTCCACTCAGT 58.471 41.667 0.00 0.00 36.85 3.41
4294 7626 7.333423 TGTTCGTTTTGACTCCCTATTTATCTG 59.667 37.037 0.00 0.00 0.00 2.90
4295 7627 7.391620 TGTTCGTTTTGACTCCCTATTTATCT 58.608 34.615 0.00 0.00 0.00 1.98
4297 7629 7.827236 TCATGTTCGTTTTGACTCCCTATTTAT 59.173 33.333 0.00 0.00 0.00 1.40
4306 7638 2.798283 TCGGTCATGTTCGTTTTGACTC 59.202 45.455 9.43 0.00 39.70 3.36
4307 7639 2.828877 TCGGTCATGTTCGTTTTGACT 58.171 42.857 9.43 0.00 39.70 3.41
4308 7640 3.285745 GTTCGGTCATGTTCGTTTTGAC 58.714 45.455 9.43 0.00 39.19 3.18
4309 7641 2.033577 CGTTCGGTCATGTTCGTTTTGA 60.034 45.455 9.43 0.00 0.00 2.69
4310 7642 2.294829 CGTTCGGTCATGTTCGTTTTG 58.705 47.619 9.43 0.00 0.00 2.44
4313 7645 0.599204 AGCGTTCGGTCATGTTCGTT 60.599 50.000 9.43 0.00 0.00 3.85
4317 7649 0.955428 ATGCAGCGTTCGGTCATGTT 60.955 50.000 0.00 0.00 0.00 2.71
4321 7653 1.573829 GGAAATGCAGCGTTCGGTCA 61.574 55.000 0.00 0.00 0.00 4.02
4352 7684 6.252995 AGCAAATTGTAAATTACTCCCTCCA 58.747 36.000 4.67 0.00 0.00 3.86
4433 7766 1.140772 GGAAGGGGAGGTCCAAAGGT 61.141 60.000 0.00 0.00 37.91 3.50
4479 7812 1.255882 TGCACCCAAGTAAATGCAGG 58.744 50.000 0.00 0.00 42.92 4.85
4514 7847 1.476074 CGCGCTCTTTTGCTCAAAAA 58.524 45.000 5.56 0.00 39.49 1.94
4515 7848 0.317770 CCGCGCTCTTTTGCTCAAAA 60.318 50.000 5.56 7.46 37.90 2.44
4516 7849 1.282570 CCGCGCTCTTTTGCTCAAA 59.717 52.632 5.56 0.00 0.00 2.69
4517 7850 2.616330 CCCGCGCTCTTTTGCTCAA 61.616 57.895 5.56 0.00 0.00 3.02
4518 7851 3.049674 CCCGCGCTCTTTTGCTCA 61.050 61.111 5.56 0.00 0.00 4.26
4519 7852 3.050275 ACCCGCGCTCTTTTGCTC 61.050 61.111 5.56 0.00 0.00 4.26
4520 7853 3.357079 CACCCGCGCTCTTTTGCT 61.357 61.111 5.56 0.00 0.00 3.91
4521 7854 3.660111 ACACCCGCGCTCTTTTGC 61.660 61.111 5.56 0.00 0.00 3.68
4522 7855 2.252260 CACACCCGCGCTCTTTTG 59.748 61.111 5.56 0.00 0.00 2.44
4523 7856 2.203153 ACACACCCGCGCTCTTTT 60.203 55.556 5.56 0.00 0.00 2.27
4524 7857 2.972505 CACACACCCGCGCTCTTT 60.973 61.111 5.56 0.00 0.00 2.52
4525 7858 4.235762 ACACACACCCGCGCTCTT 62.236 61.111 5.56 0.00 0.00 2.85
4526 7859 4.969196 CACACACACCCGCGCTCT 62.969 66.667 5.56 0.00 0.00 4.09
4530 7863 3.935872 CACACACACACACCCGCG 61.936 66.667 0.00 0.00 0.00 6.46
4531 7864 2.822255 ACACACACACACACCCGC 60.822 61.111 0.00 0.00 0.00 6.13
4532 7865 1.743623 ACACACACACACACACCCG 60.744 57.895 0.00 0.00 0.00 5.28
4533 7866 0.958382 ACACACACACACACACACCC 60.958 55.000 0.00 0.00 0.00 4.61
4534 7867 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
4535 7868 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4536 7869 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4537 7870 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
4538 7871 0.035458 TCCACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72
4539 7872 0.726827 CTCCACACACACACACACAC 59.273 55.000 0.00 0.00 0.00 3.82
4540 7873 0.392327 CCTCCACACACACACACACA 60.392 55.000 0.00 0.00 0.00 3.72
4541 7874 1.095228 CCCTCCACACACACACACAC 61.095 60.000 0.00 0.00 0.00 3.82
4542 7875 1.223211 CCCTCCACACACACACACA 59.777 57.895 0.00 0.00 0.00 3.72
4543 7876 1.525995 CCCCTCCACACACACACAC 60.526 63.158 0.00 0.00 0.00 3.82
4544 7877 2.751731 CCCCCTCCACACACACACA 61.752 63.158 0.00 0.00 0.00 3.72
4545 7878 2.113139 CCCCCTCCACACACACAC 59.887 66.667 0.00 0.00 0.00 3.82
4560 7893 1.954382 GTTAATGAAATCGGAGCCCCC 59.046 52.381 0.00 0.00 0.00 5.40
4561 7894 1.602377 CGTTAATGAAATCGGAGCCCC 59.398 52.381 0.00 0.00 0.00 5.80
4562 7895 2.557317 TCGTTAATGAAATCGGAGCCC 58.443 47.619 0.00 0.00 0.00 5.19
4563 7896 3.002348 CCTTCGTTAATGAAATCGGAGCC 59.998 47.826 11.17 0.00 0.00 4.70
4564 7897 3.546218 GCCTTCGTTAATGAAATCGGAGC 60.546 47.826 15.10 7.17 0.00 4.70
4565 7898 3.621268 TGCCTTCGTTAATGAAATCGGAG 59.379 43.478 15.10 1.31 0.00 4.63
4566 7899 3.601435 TGCCTTCGTTAATGAAATCGGA 58.399 40.909 15.10 4.38 0.00 4.55
4567 7900 4.035091 TGATGCCTTCGTTAATGAAATCGG 59.965 41.667 11.17 9.96 0.00 4.18
4568 7901 5.155509 TGATGCCTTCGTTAATGAAATCG 57.844 39.130 11.17 3.65 0.00 3.34
4569 7902 6.555315 ACTTGATGCCTTCGTTAATGAAATC 58.445 36.000 11.17 11.26 0.00 2.17
4570 7903 6.375455 AGACTTGATGCCTTCGTTAATGAAAT 59.625 34.615 11.17 2.62 0.00 2.17
4571 7904 5.705441 AGACTTGATGCCTTCGTTAATGAAA 59.295 36.000 11.17 0.00 0.00 2.69
4572 7905 5.245531 AGACTTGATGCCTTCGTTAATGAA 58.754 37.500 9.70 9.70 0.00 2.57
4573 7906 4.832248 AGACTTGATGCCTTCGTTAATGA 58.168 39.130 0.00 0.00 0.00 2.57
4574 7907 6.662414 TTAGACTTGATGCCTTCGTTAATG 57.338 37.500 0.00 0.00 0.00 1.90
4575 7908 7.865706 AATTAGACTTGATGCCTTCGTTAAT 57.134 32.000 0.00 0.00 0.00 1.40
4576 7909 8.780846 TTAATTAGACTTGATGCCTTCGTTAA 57.219 30.769 0.00 0.00 0.00 2.01
4577 7910 8.038944 ACTTAATTAGACTTGATGCCTTCGTTA 58.961 33.333 0.00 0.00 0.00 3.18
4578 7911 6.879458 ACTTAATTAGACTTGATGCCTTCGTT 59.121 34.615 0.00 0.00 0.00 3.85
4579 7912 6.407202 ACTTAATTAGACTTGATGCCTTCGT 58.593 36.000 0.00 0.00 0.00 3.85
4580 7913 6.910536 ACTTAATTAGACTTGATGCCTTCG 57.089 37.500 0.00 0.00 0.00 3.79
4583 7916 9.178758 CCTAAAACTTAATTAGACTTGATGCCT 57.821 33.333 0.00 0.00 33.16 4.75
4584 7917 9.174166 TCCTAAAACTTAATTAGACTTGATGCC 57.826 33.333 0.00 0.00 33.16 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.