Multiple sequence alignment - TraesCS4A01G036300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G036300 chr4A 100.000 2549 0 0 1 2549 29028433 29030981 0.000000e+00 4708
1 TraesCS4A01G036300 chr4A 96.683 1990 52 6 569 2549 626934247 626932263 0.000000e+00 3297
2 TraesCS4A01G036300 chr7A 97.035 1990 45 7 570 2549 689996369 689994384 0.000000e+00 3336
3 TraesCS4A01G036300 chr7A 96.734 1990 53 5 569 2549 150203039 150201053 0.000000e+00 3304
4 TraesCS4A01G036300 chr6A 96.884 1990 50 5 569 2549 200078198 200080184 0.000000e+00 3321
5 TraesCS4A01G036300 chr6A 95.943 1972 63 7 568 2528 616131294 616133259 0.000000e+00 3182
6 TraesCS4A01G036300 chr5A 96.387 1993 56 9 570 2549 14186781 14184792 0.000000e+00 3267
7 TraesCS4A01G036300 chr5A 96.185 1992 60 7 569 2549 91049246 91051232 0.000000e+00 3243
8 TraesCS4A01G036300 chr3A 96.183 1991 62 6 568 2549 735555339 735557324 0.000000e+00 3243
9 TraesCS4A01G036300 chr3A 96.181 1990 56 5 570 2549 747075302 747073323 0.000000e+00 3236
10 TraesCS4A01G036300 chr3A 95.375 1989 59 9 570 2549 696312540 696310576 0.000000e+00 3133
11 TraesCS4A01G036300 chr1A 95.940 1946 63 7 613 2549 531499961 531498023 0.000000e+00 3142
12 TraesCS4A01G036300 chr1A 94.899 1725 73 8 568 2283 462529531 462531249 0.000000e+00 2684
13 TraesCS4A01G036300 chr2A 96.990 1628 39 4 931 2549 744582359 744583985 0.000000e+00 2726
14 TraesCS4A01G036300 chr4D 80.040 496 37 14 97 567 439698371 439698829 6.850000e-81 311
15 TraesCS4A01G036300 chr4B 81.657 338 37 10 223 537 544110380 544110715 9.050000e-65 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G036300 chr4A 29028433 29030981 2548 False 4708 4708 100.000 1 2549 1 chr4A.!!$F1 2548
1 TraesCS4A01G036300 chr4A 626932263 626934247 1984 True 3297 3297 96.683 569 2549 1 chr4A.!!$R1 1980
2 TraesCS4A01G036300 chr7A 689994384 689996369 1985 True 3336 3336 97.035 570 2549 1 chr7A.!!$R2 1979
3 TraesCS4A01G036300 chr7A 150201053 150203039 1986 True 3304 3304 96.734 569 2549 1 chr7A.!!$R1 1980
4 TraesCS4A01G036300 chr6A 200078198 200080184 1986 False 3321 3321 96.884 569 2549 1 chr6A.!!$F1 1980
5 TraesCS4A01G036300 chr6A 616131294 616133259 1965 False 3182 3182 95.943 568 2528 1 chr6A.!!$F2 1960
6 TraesCS4A01G036300 chr5A 14184792 14186781 1989 True 3267 3267 96.387 570 2549 1 chr5A.!!$R1 1979
7 TraesCS4A01G036300 chr5A 91049246 91051232 1986 False 3243 3243 96.185 569 2549 1 chr5A.!!$F1 1980
8 TraesCS4A01G036300 chr3A 735555339 735557324 1985 False 3243 3243 96.183 568 2549 1 chr3A.!!$F1 1981
9 TraesCS4A01G036300 chr3A 747073323 747075302 1979 True 3236 3236 96.181 570 2549 1 chr3A.!!$R2 1979
10 TraesCS4A01G036300 chr3A 696310576 696312540 1964 True 3133 3133 95.375 570 2549 1 chr3A.!!$R1 1979
11 TraesCS4A01G036300 chr1A 531498023 531499961 1938 True 3142 3142 95.940 613 2549 1 chr1A.!!$R1 1936
12 TraesCS4A01G036300 chr1A 462529531 462531249 1718 False 2684 2684 94.899 568 2283 1 chr1A.!!$F1 1715
13 TraesCS4A01G036300 chr2A 744582359 744583985 1626 False 2726 2726 96.990 931 2549 1 chr2A.!!$F1 1618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
474 475 0.039527 GCTCGGCGTTGGTTGATTTT 60.04 50.0 6.85 0.0 0.0 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 1779 2.233676 TGGCTCTACGCTCTGAATTTGA 59.766 45.455 0.0 0.0 39.13 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 8.006298 ACATAAAATGTGAACCTTGACTTTCA 57.994 30.769 0.00 0.00 43.01 2.69
103 104 8.641541 ACATAAAATGTGAACCTTGACTTTCAT 58.358 29.630 0.00 0.00 43.01 2.57
104 105 8.918658 CATAAAATGTGAACCTTGACTTTCATG 58.081 33.333 0.00 0.00 34.34 3.07
105 106 6.713762 AAATGTGAACCTTGACTTTCATGA 57.286 33.333 0.00 0.00 34.34 3.07
106 107 6.713762 AATGTGAACCTTGACTTTCATGAA 57.286 33.333 3.38 3.38 34.34 2.57
107 108 6.713762 ATGTGAACCTTGACTTTCATGAAA 57.286 33.333 19.45 19.45 34.34 2.69
108 109 6.522625 TGTGAACCTTGACTTTCATGAAAA 57.477 33.333 20.82 4.71 34.34 2.29
109 110 7.111247 TGTGAACCTTGACTTTCATGAAAAT 57.889 32.000 20.82 12.23 34.34 1.82
110 111 7.202526 TGTGAACCTTGACTTTCATGAAAATC 58.797 34.615 20.02 20.02 34.34 2.17
111 112 7.147932 TGTGAACCTTGACTTTCATGAAAATCA 60.148 33.333 24.30 24.30 35.14 2.57
112 113 7.168135 GTGAACCTTGACTTTCATGAAAATCAC 59.832 37.037 27.01 17.41 36.45 3.06
113 114 6.966534 ACCTTGACTTTCATGAAAATCACT 57.033 33.333 27.01 12.94 36.45 3.41
114 115 8.463930 AACCTTGACTTTCATGAAAATCACTA 57.536 30.769 27.01 15.46 36.45 2.74
115 116 8.641498 ACCTTGACTTTCATGAAAATCACTAT 57.359 30.769 27.01 14.78 36.45 2.12
116 117 8.517878 ACCTTGACTTTCATGAAAATCACTATG 58.482 33.333 27.01 18.37 36.45 2.23
117 118 7.487189 CCTTGACTTTCATGAAAATCACTATGC 59.513 37.037 27.01 3.95 36.45 3.14
118 119 7.451501 TGACTTTCATGAAAATCACTATGCA 57.548 32.000 24.30 4.80 32.47 3.96
119 120 7.307694 TGACTTTCATGAAAATCACTATGCAC 58.692 34.615 24.30 8.64 32.47 4.57
120 121 7.040548 TGACTTTCATGAAAATCACTATGCACA 60.041 33.333 24.30 10.59 32.47 4.57
121 122 7.833786 ACTTTCATGAAAATCACTATGCACAT 58.166 30.769 20.82 0.00 0.00 3.21
122 123 8.308931 ACTTTCATGAAAATCACTATGCACATT 58.691 29.630 20.82 0.00 0.00 2.71
123 124 9.791820 CTTTCATGAAAATCACTATGCACATTA 57.208 29.630 20.82 0.00 0.00 1.90
130 131 9.630098 GAAAATCACTATGCACATTATTATGGG 57.370 33.333 0.00 0.00 38.26 4.00
131 132 7.707624 AATCACTATGCACATTATTATGGGG 57.292 36.000 0.00 0.00 35.61 4.96
132 133 5.009631 TCACTATGCACATTATTATGGGGC 58.990 41.667 0.00 0.40 35.61 5.80
133 134 4.766373 CACTATGCACATTATTATGGGGCA 59.234 41.667 13.30 13.30 44.61 5.36
134 135 5.012239 ACTATGCACATTATTATGGGGCAG 58.988 41.667 15.29 8.12 44.12 4.85
135 136 3.591695 TGCACATTATTATGGGGCAGA 57.408 42.857 8.60 0.00 39.61 4.26
136 137 3.489355 TGCACATTATTATGGGGCAGAG 58.511 45.455 8.60 0.00 39.61 3.35
137 138 3.138098 TGCACATTATTATGGGGCAGAGA 59.862 43.478 8.60 0.00 39.61 3.10
138 139 3.755378 GCACATTATTATGGGGCAGAGAG 59.245 47.826 0.00 0.00 35.61 3.20
139 140 4.505566 GCACATTATTATGGGGCAGAGAGA 60.506 45.833 0.00 0.00 35.61 3.10
140 141 5.243981 CACATTATTATGGGGCAGAGAGAG 58.756 45.833 0.00 0.00 36.01 3.20
141 142 4.910304 ACATTATTATGGGGCAGAGAGAGT 59.090 41.667 0.00 0.00 36.01 3.24
142 143 6.014242 CACATTATTATGGGGCAGAGAGAGTA 60.014 42.308 0.00 0.00 36.01 2.59
143 144 6.014156 ACATTATTATGGGGCAGAGAGAGTAC 60.014 42.308 0.00 0.00 36.01 2.73
144 145 2.383442 TATGGGGCAGAGAGAGTACC 57.617 55.000 0.00 0.00 0.00 3.34
145 146 0.339859 ATGGGGCAGAGAGAGTACCA 59.660 55.000 0.00 0.00 0.00 3.25
146 147 0.339859 TGGGGCAGAGAGAGTACCAT 59.660 55.000 0.00 0.00 0.00 3.55
147 148 0.755686 GGGGCAGAGAGAGTACCATG 59.244 60.000 0.00 0.00 0.00 3.66
148 149 1.490574 GGGCAGAGAGAGTACCATGT 58.509 55.000 0.00 0.00 0.00 3.21
149 150 1.834263 GGGCAGAGAGAGTACCATGTT 59.166 52.381 0.00 0.00 0.00 2.71
150 151 3.031736 GGGCAGAGAGAGTACCATGTTA 58.968 50.000 0.00 0.00 0.00 2.41
151 152 3.451178 GGGCAGAGAGAGTACCATGTTAA 59.549 47.826 0.00 0.00 0.00 2.01
152 153 4.101741 GGGCAGAGAGAGTACCATGTTAAT 59.898 45.833 0.00 0.00 0.00 1.40
153 154 5.304614 GGGCAGAGAGAGTACCATGTTAATA 59.695 44.000 0.00 0.00 0.00 0.98
154 155 6.183360 GGGCAGAGAGAGTACCATGTTAATAA 60.183 42.308 0.00 0.00 0.00 1.40
155 156 7.272978 GGCAGAGAGAGTACCATGTTAATAAA 58.727 38.462 0.00 0.00 0.00 1.40
156 157 7.439655 GGCAGAGAGAGTACCATGTTAATAAAG 59.560 40.741 0.00 0.00 0.00 1.85
157 158 7.439655 GCAGAGAGAGTACCATGTTAATAAAGG 59.560 40.741 0.00 0.00 0.00 3.11
158 159 8.696374 CAGAGAGAGTACCATGTTAATAAAGGA 58.304 37.037 0.00 0.00 0.00 3.36
159 160 9.440761 AGAGAGAGTACCATGTTAATAAAGGAT 57.559 33.333 0.00 0.00 0.00 3.24
160 161 9.699703 GAGAGAGTACCATGTTAATAAAGGATC 57.300 37.037 0.00 0.00 0.00 3.36
161 162 9.213777 AGAGAGTACCATGTTAATAAAGGATCA 57.786 33.333 0.00 0.00 0.00 2.92
162 163 9.832445 GAGAGTACCATGTTAATAAAGGATCAA 57.168 33.333 0.00 0.00 0.00 2.57
181 182 9.471702 AGGATCAAAGATATGTTTCAGAATTGT 57.528 29.630 0.00 0.00 0.00 2.71
182 183 9.512435 GGATCAAAGATATGTTTCAGAATTGTG 57.488 33.333 0.00 0.00 0.00 3.33
185 186 9.065798 TCAAAGATATGTTTCAGAATTGTGTCA 57.934 29.630 2.11 2.12 0.00 3.58
186 187 9.681692 CAAAGATATGTTTCAGAATTGTGTCAA 57.318 29.630 2.11 0.00 0.00 3.18
216 217 8.667076 AAAAATCATTTCCTTTGAACTCAAGG 57.333 30.769 0.00 0.00 37.15 3.61
217 218 7.601705 AAATCATTTCCTTTGAACTCAAGGA 57.398 32.000 3.32 5.20 37.15 3.36
218 219 6.830873 ATCATTTCCTTTGAACTCAAGGAG 57.169 37.500 3.32 0.00 37.15 3.69
219 220 5.694995 TCATTTCCTTTGAACTCAAGGAGT 58.305 37.500 3.32 0.00 45.64 3.85
220 221 6.837312 TCATTTCCTTTGAACTCAAGGAGTA 58.163 36.000 3.32 0.00 42.59 2.59
221 222 7.461749 TCATTTCCTTTGAACTCAAGGAGTAT 58.538 34.615 3.32 0.00 42.59 2.12
222 223 7.944554 TCATTTCCTTTGAACTCAAGGAGTATT 59.055 33.333 3.32 0.00 42.59 1.89
223 224 9.231297 CATTTCCTTTGAACTCAAGGAGTATTA 57.769 33.333 3.32 0.00 42.59 0.98
224 225 9.807921 ATTTCCTTTGAACTCAAGGAGTATTAA 57.192 29.630 3.32 0.00 42.59 1.40
225 226 8.617290 TTCCTTTGAACTCAAGGAGTATTAAC 57.383 34.615 3.32 0.00 42.59 2.01
226 227 7.741785 TCCTTTGAACTCAAGGAGTATTAACA 58.258 34.615 3.32 0.00 42.59 2.41
227 228 8.383175 TCCTTTGAACTCAAGGAGTATTAACAT 58.617 33.333 3.32 0.00 42.59 2.71
228 229 9.667107 CCTTTGAACTCAAGGAGTATTAACATA 57.333 33.333 3.32 0.00 42.59 2.29
287 288 8.506168 TTTTCTTTTGATAGAACAGTCTGTGT 57.494 30.769 6.18 0.00 43.24 3.72
288 289 7.482654 TTCTTTTGATAGAACAGTCTGTGTG 57.517 36.000 6.18 0.00 40.26 3.82
289 290 5.991606 TCTTTTGATAGAACAGTCTGTGTGG 59.008 40.000 6.18 0.00 40.26 4.17
290 291 5.545063 TTTGATAGAACAGTCTGTGTGGA 57.455 39.130 6.18 0.00 40.26 4.02
291 292 4.790765 TGATAGAACAGTCTGTGTGGAG 57.209 45.455 6.18 0.00 40.26 3.86
292 293 4.407365 TGATAGAACAGTCTGTGTGGAGA 58.593 43.478 6.18 0.00 40.26 3.71
293 294 5.019470 TGATAGAACAGTCTGTGTGGAGAT 58.981 41.667 6.18 0.00 40.26 2.75
294 295 3.674528 AGAACAGTCTGTGTGGAGATG 57.325 47.619 6.18 0.00 40.26 2.90
295 296 3.234353 AGAACAGTCTGTGTGGAGATGA 58.766 45.455 6.18 0.00 40.26 2.92
296 297 3.006323 AGAACAGTCTGTGTGGAGATGAC 59.994 47.826 6.18 0.00 40.26 3.06
297 298 2.319844 ACAGTCTGTGTGGAGATGACA 58.680 47.619 4.21 0.00 38.28 3.58
298 299 2.902486 ACAGTCTGTGTGGAGATGACAT 59.098 45.455 4.21 0.00 38.28 3.06
299 300 3.326006 ACAGTCTGTGTGGAGATGACATT 59.674 43.478 4.21 0.00 38.28 2.71
300 301 3.931468 CAGTCTGTGTGGAGATGACATTC 59.069 47.826 0.00 0.00 0.00 2.67
301 302 3.580022 AGTCTGTGTGGAGATGACATTCA 59.420 43.478 0.00 0.00 0.00 2.57
302 303 3.931468 GTCTGTGTGGAGATGACATTCAG 59.069 47.826 0.00 0.00 0.00 3.02
303 304 2.676839 CTGTGTGGAGATGACATTCAGC 59.323 50.000 0.00 0.00 31.96 4.26
305 306 3.244665 TGTGTGGAGATGACATTCAGCTT 60.245 43.478 0.00 0.00 44.01 3.74
306 307 3.755378 GTGTGGAGATGACATTCAGCTTT 59.245 43.478 0.00 0.00 44.01 3.51
307 308 4.937620 GTGTGGAGATGACATTCAGCTTTA 59.062 41.667 0.00 0.00 44.01 1.85
308 309 4.937620 TGTGGAGATGACATTCAGCTTTAC 59.062 41.667 0.00 0.00 44.01 2.01
309 310 4.333926 GTGGAGATGACATTCAGCTTTACC 59.666 45.833 0.00 0.00 44.01 2.85
310 311 4.225942 TGGAGATGACATTCAGCTTTACCT 59.774 41.667 0.00 0.00 44.01 3.08
311 312 4.813697 GGAGATGACATTCAGCTTTACCTC 59.186 45.833 0.00 0.00 44.01 3.85
312 313 5.423015 GAGATGACATTCAGCTTTACCTCA 58.577 41.667 0.00 0.00 44.01 3.86
313 314 5.999044 AGATGACATTCAGCTTTACCTCAT 58.001 37.500 0.00 0.00 40.71 2.90
314 315 5.821470 AGATGACATTCAGCTTTACCTCATG 59.179 40.000 0.00 0.00 40.71 3.07
315 316 3.691118 TGACATTCAGCTTTACCTCATGC 59.309 43.478 0.00 0.00 0.00 4.06
316 317 3.944015 GACATTCAGCTTTACCTCATGCT 59.056 43.478 0.00 0.00 36.04 3.79
317 318 3.944015 ACATTCAGCTTTACCTCATGCTC 59.056 43.478 0.00 0.00 33.03 4.26
318 319 3.988976 TTCAGCTTTACCTCATGCTCT 57.011 42.857 0.00 0.00 33.03 4.09
319 320 5.104776 ACATTCAGCTTTACCTCATGCTCTA 60.105 40.000 0.00 0.00 33.03 2.43
320 321 4.662468 TCAGCTTTACCTCATGCTCTAG 57.338 45.455 0.00 0.00 33.03 2.43
321 322 3.129871 CAGCTTTACCTCATGCTCTAGC 58.870 50.000 0.00 0.00 42.50 3.42
322 323 3.037549 AGCTTTACCTCATGCTCTAGCT 58.962 45.455 3.26 0.00 42.66 3.32
323 324 3.129871 GCTTTACCTCATGCTCTAGCTG 58.870 50.000 0.00 0.00 42.66 4.24
324 325 3.431486 GCTTTACCTCATGCTCTAGCTGT 60.431 47.826 0.00 0.00 42.66 4.40
325 326 3.808466 TTACCTCATGCTCTAGCTGTG 57.192 47.619 0.00 2.95 42.66 3.66
326 327 0.177604 ACCTCATGCTCTAGCTGTGC 59.822 55.000 0.00 0.00 42.66 4.57
328 329 1.573026 CTCATGCTCTAGCTGTGCAG 58.427 55.000 13.76 0.00 46.37 4.41
329 330 0.900421 TCATGCTCTAGCTGTGCAGT 59.100 50.000 13.76 2.90 46.37 4.40
330 331 1.277273 TCATGCTCTAGCTGTGCAGTT 59.723 47.619 13.76 0.00 46.37 3.16
331 332 2.082231 CATGCTCTAGCTGTGCAGTTT 58.918 47.619 13.76 0.00 46.37 2.66
332 333 3.055891 TCATGCTCTAGCTGTGCAGTTTA 60.056 43.478 13.76 0.00 46.37 2.01
333 334 3.616956 TGCTCTAGCTGTGCAGTTTAT 57.383 42.857 0.00 0.00 39.83 1.40
334 335 3.525537 TGCTCTAGCTGTGCAGTTTATC 58.474 45.455 0.00 0.00 39.83 1.75
335 336 3.196469 TGCTCTAGCTGTGCAGTTTATCT 59.804 43.478 0.00 0.00 39.83 1.98
336 337 3.801594 GCTCTAGCTGTGCAGTTTATCTC 59.198 47.826 0.00 0.00 38.21 2.75
337 338 4.367450 CTCTAGCTGTGCAGTTTATCTCC 58.633 47.826 0.00 0.00 0.00 3.71
338 339 3.769300 TCTAGCTGTGCAGTTTATCTCCA 59.231 43.478 0.00 0.00 0.00 3.86
339 340 3.641434 AGCTGTGCAGTTTATCTCCAT 57.359 42.857 0.00 0.00 0.00 3.41
340 341 3.960571 AGCTGTGCAGTTTATCTCCATT 58.039 40.909 0.00 0.00 0.00 3.16
341 342 4.338879 AGCTGTGCAGTTTATCTCCATTT 58.661 39.130 0.00 0.00 0.00 2.32
342 343 4.157289 AGCTGTGCAGTTTATCTCCATTTG 59.843 41.667 0.00 0.00 0.00 2.32
343 344 4.082571 GCTGTGCAGTTTATCTCCATTTGT 60.083 41.667 0.00 0.00 0.00 2.83
344 345 5.627499 TGTGCAGTTTATCTCCATTTGTC 57.373 39.130 0.00 0.00 0.00 3.18
345 346 5.069318 TGTGCAGTTTATCTCCATTTGTCA 58.931 37.500 0.00 0.00 0.00 3.58
346 347 5.711506 TGTGCAGTTTATCTCCATTTGTCAT 59.288 36.000 0.00 0.00 0.00 3.06
347 348 6.127925 TGTGCAGTTTATCTCCATTTGTCATC 60.128 38.462 0.00 0.00 0.00 2.92
348 349 6.094603 GTGCAGTTTATCTCCATTTGTCATCT 59.905 38.462 0.00 0.00 0.00 2.90
349 350 6.094464 TGCAGTTTATCTCCATTTGTCATCTG 59.906 38.462 0.00 0.00 0.00 2.90
350 351 6.317140 GCAGTTTATCTCCATTTGTCATCTGA 59.683 38.462 0.00 0.00 0.00 3.27
351 352 7.466996 GCAGTTTATCTCCATTTGTCATCTGAG 60.467 40.741 0.00 0.00 0.00 3.35
352 353 7.551974 CAGTTTATCTCCATTTGTCATCTGAGT 59.448 37.037 0.00 0.00 0.00 3.41
353 354 8.105829 AGTTTATCTCCATTTGTCATCTGAGTT 58.894 33.333 0.00 0.00 0.00 3.01
354 355 8.734386 GTTTATCTCCATTTGTCATCTGAGTTT 58.266 33.333 0.00 0.00 0.00 2.66
355 356 8.868522 TTATCTCCATTTGTCATCTGAGTTTT 57.131 30.769 0.00 0.00 0.00 2.43
356 357 6.564709 TCTCCATTTGTCATCTGAGTTTTG 57.435 37.500 0.00 0.00 0.00 2.44
357 358 6.298361 TCTCCATTTGTCATCTGAGTTTTGA 58.702 36.000 0.00 0.00 0.00 2.69
358 359 6.772233 TCTCCATTTGTCATCTGAGTTTTGAA 59.228 34.615 0.00 0.00 0.00 2.69
359 360 6.738114 TCCATTTGTCATCTGAGTTTTGAAC 58.262 36.000 0.00 0.00 0.00 3.18
360 361 6.320926 TCCATTTGTCATCTGAGTTTTGAACA 59.679 34.615 0.00 0.00 0.00 3.18
361 362 7.014518 TCCATTTGTCATCTGAGTTTTGAACAT 59.985 33.333 0.00 0.00 0.00 2.71
362 363 7.115805 CCATTTGTCATCTGAGTTTTGAACATG 59.884 37.037 0.00 0.00 0.00 3.21
363 364 6.940831 TTGTCATCTGAGTTTTGAACATGA 57.059 33.333 0.00 0.00 0.00 3.07
364 365 6.304356 TGTCATCTGAGTTTTGAACATGAC 57.696 37.500 0.00 11.79 39.56 3.06
365 366 5.821995 TGTCATCTGAGTTTTGAACATGACA 59.178 36.000 15.07 15.07 43.15 3.58
366 367 6.318396 TGTCATCTGAGTTTTGAACATGACAA 59.682 34.615 16.00 2.70 42.79 3.18
367 368 7.013559 TGTCATCTGAGTTTTGAACATGACAAT 59.986 33.333 16.00 0.00 42.79 2.71
368 369 7.864379 GTCATCTGAGTTTTGAACATGACAATT 59.136 33.333 0.00 0.00 39.22 2.32
369 370 8.415553 TCATCTGAGTTTTGAACATGACAATTT 58.584 29.630 0.00 0.00 0.00 1.82
370 371 8.697067 CATCTGAGTTTTGAACATGACAATTTC 58.303 33.333 0.00 0.00 0.00 2.17
371 372 7.202526 TCTGAGTTTTGAACATGACAATTTCC 58.797 34.615 0.00 0.00 0.00 3.13
372 373 7.068593 TCTGAGTTTTGAACATGACAATTTCCT 59.931 33.333 0.00 0.24 0.00 3.36
373 374 7.202526 TGAGTTTTGAACATGACAATTTCCTC 58.797 34.615 0.00 8.68 0.00 3.71
374 375 6.515832 AGTTTTGAACATGACAATTTCCTCC 58.484 36.000 0.00 0.00 0.00 4.30
375 376 6.098124 AGTTTTGAACATGACAATTTCCTCCA 59.902 34.615 0.00 0.00 0.00 3.86
376 377 6.669125 TTTGAACATGACAATTTCCTCCAT 57.331 33.333 0.00 0.00 0.00 3.41
377 378 5.902613 TGAACATGACAATTTCCTCCATC 57.097 39.130 0.00 0.00 0.00 3.51
378 379 5.323581 TGAACATGACAATTTCCTCCATCA 58.676 37.500 0.00 0.00 0.00 3.07
379 380 5.774184 TGAACATGACAATTTCCTCCATCAA 59.226 36.000 0.00 0.00 0.00 2.57
380 381 5.909621 ACATGACAATTTCCTCCATCAAG 57.090 39.130 0.00 0.00 0.00 3.02
381 382 5.327732 ACATGACAATTTCCTCCATCAAGT 58.672 37.500 0.00 0.00 0.00 3.16
382 383 5.184479 ACATGACAATTTCCTCCATCAAGTG 59.816 40.000 0.00 0.00 0.00 3.16
383 384 4.728772 TGACAATTTCCTCCATCAAGTGT 58.271 39.130 0.00 0.00 31.72 3.55
384 385 4.761739 TGACAATTTCCTCCATCAAGTGTC 59.238 41.667 5.09 5.09 42.86 3.67
385 386 4.990526 ACAATTTCCTCCATCAAGTGTCT 58.009 39.130 0.00 0.00 0.00 3.41
386 387 5.388654 ACAATTTCCTCCATCAAGTGTCTT 58.611 37.500 0.00 0.00 0.00 3.01
387 388 5.474876 ACAATTTCCTCCATCAAGTGTCTTC 59.525 40.000 0.00 0.00 0.00 2.87
388 389 3.319137 TTCCTCCATCAAGTGTCTTCG 57.681 47.619 0.00 0.00 0.00 3.79
389 390 2.525368 TCCTCCATCAAGTGTCTTCGA 58.475 47.619 0.00 0.00 0.00 3.71
390 391 3.099905 TCCTCCATCAAGTGTCTTCGAT 58.900 45.455 0.00 0.00 0.00 3.59
391 392 3.131223 TCCTCCATCAAGTGTCTTCGATC 59.869 47.826 0.00 0.00 0.00 3.69
392 393 3.131933 CCTCCATCAAGTGTCTTCGATCT 59.868 47.826 0.00 0.00 0.00 2.75
393 394 4.339530 CCTCCATCAAGTGTCTTCGATCTA 59.660 45.833 0.00 0.00 0.00 1.98
394 395 5.506686 TCCATCAAGTGTCTTCGATCTAG 57.493 43.478 0.00 0.00 0.00 2.43
395 396 5.193679 TCCATCAAGTGTCTTCGATCTAGA 58.806 41.667 0.00 0.00 0.00 2.43
396 397 5.298026 TCCATCAAGTGTCTTCGATCTAGAG 59.702 44.000 0.00 0.00 0.00 2.43
397 398 5.507149 CCATCAAGTGTCTTCGATCTAGAGG 60.507 48.000 0.00 0.00 0.00 3.69
398 399 4.590918 TCAAGTGTCTTCGATCTAGAGGT 58.409 43.478 0.00 0.00 0.00 3.85
399 400 5.010933 TCAAGTGTCTTCGATCTAGAGGTT 58.989 41.667 0.00 0.00 0.00 3.50
400 401 5.477291 TCAAGTGTCTTCGATCTAGAGGTTT 59.523 40.000 0.00 0.00 0.00 3.27
401 402 5.570234 AGTGTCTTCGATCTAGAGGTTTC 57.430 43.478 0.00 0.00 0.00 2.78
402 403 5.010933 AGTGTCTTCGATCTAGAGGTTTCA 58.989 41.667 0.00 0.00 0.00 2.69
403 404 5.477291 AGTGTCTTCGATCTAGAGGTTTCAA 59.523 40.000 0.00 0.00 0.00 2.69
404 405 6.153680 AGTGTCTTCGATCTAGAGGTTTCAAT 59.846 38.462 0.00 0.00 0.00 2.57
405 406 6.254589 GTGTCTTCGATCTAGAGGTTTCAATG 59.745 42.308 0.00 0.00 0.00 2.82
406 407 5.233263 GTCTTCGATCTAGAGGTTTCAATGC 59.767 44.000 0.00 0.00 0.00 3.56
407 408 5.127845 TCTTCGATCTAGAGGTTTCAATGCT 59.872 40.000 0.00 0.00 0.00 3.79
408 409 6.321435 TCTTCGATCTAGAGGTTTCAATGCTA 59.679 38.462 0.00 0.00 0.00 3.49
409 410 5.833082 TCGATCTAGAGGTTTCAATGCTAC 58.167 41.667 0.00 0.00 0.00 3.58
410 411 5.594725 TCGATCTAGAGGTTTCAATGCTACT 59.405 40.000 0.00 0.00 0.00 2.57
411 412 5.689514 CGATCTAGAGGTTTCAATGCTACTG 59.310 44.000 0.00 0.00 0.00 2.74
412 413 5.344743 TCTAGAGGTTTCAATGCTACTGG 57.655 43.478 0.00 0.00 0.00 4.00
413 414 4.777896 TCTAGAGGTTTCAATGCTACTGGT 59.222 41.667 0.00 0.00 0.00 4.00
414 415 4.373156 AGAGGTTTCAATGCTACTGGTT 57.627 40.909 0.00 0.00 0.00 3.67
415 416 4.729868 AGAGGTTTCAATGCTACTGGTTT 58.270 39.130 0.00 0.00 0.00 3.27
416 417 4.520492 AGAGGTTTCAATGCTACTGGTTTG 59.480 41.667 0.00 0.00 0.00 2.93
417 418 3.005791 AGGTTTCAATGCTACTGGTTTGC 59.994 43.478 0.00 0.00 0.00 3.68
418 419 2.979813 GTTTCAATGCTACTGGTTTGCG 59.020 45.455 0.00 0.00 0.00 4.85
419 420 1.890876 TCAATGCTACTGGTTTGCGT 58.109 45.000 0.00 0.00 0.00 5.24
420 421 1.804151 TCAATGCTACTGGTTTGCGTC 59.196 47.619 0.00 0.00 0.00 5.19
421 422 1.806542 CAATGCTACTGGTTTGCGTCT 59.193 47.619 0.00 0.00 0.00 4.18
422 423 1.726853 ATGCTACTGGTTTGCGTCTC 58.273 50.000 0.00 0.00 0.00 3.36
423 424 0.666274 TGCTACTGGTTTGCGTCTCG 60.666 55.000 0.00 0.00 0.00 4.04
424 425 1.352156 GCTACTGGTTTGCGTCTCGG 61.352 60.000 0.00 0.00 0.00 4.63
425 426 0.736325 CTACTGGTTTGCGTCTCGGG 60.736 60.000 0.00 0.00 0.00 5.14
426 427 1.466025 TACTGGTTTGCGTCTCGGGT 61.466 55.000 0.00 0.00 0.00 5.28
427 428 2.027625 CTGGTTTGCGTCTCGGGTC 61.028 63.158 0.00 0.00 0.00 4.46
428 429 3.110178 GGTTTGCGTCTCGGGTCG 61.110 66.667 0.00 0.00 0.00 4.79
429 430 3.110178 GTTTGCGTCTCGGGTCGG 61.110 66.667 3.71 0.00 0.00 4.79
430 431 3.608662 TTTGCGTCTCGGGTCGGT 61.609 61.111 3.71 0.00 0.00 4.69
431 432 3.851845 TTTGCGTCTCGGGTCGGTG 62.852 63.158 3.71 0.00 0.00 4.94
434 435 4.415332 CGTCTCGGGTCGGTGGTG 62.415 72.222 0.00 0.00 0.00 4.17
435 436 4.065281 GTCTCGGGTCGGTGGTGG 62.065 72.222 0.00 0.00 0.00 4.61
441 442 4.028490 GGTCGGTGGTGGCCATGA 62.028 66.667 9.72 0.00 35.28 3.07
442 443 2.746277 GTCGGTGGTGGCCATGAC 60.746 66.667 9.72 8.83 35.28 3.06
443 444 2.927856 TCGGTGGTGGCCATGACT 60.928 61.111 9.72 0.00 35.28 3.41
444 445 1.610967 TCGGTGGTGGCCATGACTA 60.611 57.895 9.72 0.00 35.28 2.59
445 446 1.195442 TCGGTGGTGGCCATGACTAA 61.195 55.000 9.72 0.00 35.28 2.24
446 447 0.107214 CGGTGGTGGCCATGACTAAT 60.107 55.000 9.72 0.00 35.28 1.73
447 448 1.392589 GGTGGTGGCCATGACTAATG 58.607 55.000 9.72 0.00 35.28 1.90
448 449 0.740737 GTGGTGGCCATGACTAATGC 59.259 55.000 9.72 0.00 35.28 3.56
449 450 0.330941 TGGTGGCCATGACTAATGCA 59.669 50.000 9.72 0.00 34.67 3.96
450 451 1.027357 GGTGGCCATGACTAATGCAG 58.973 55.000 9.72 0.00 34.67 4.41
451 452 1.027357 GTGGCCATGACTAATGCAGG 58.973 55.000 9.72 0.00 34.67 4.85
452 453 0.918258 TGGCCATGACTAATGCAGGA 59.082 50.000 0.00 0.00 34.67 3.86
453 454 1.134007 TGGCCATGACTAATGCAGGAG 60.134 52.381 0.00 0.00 34.67 3.69
454 455 1.141657 GGCCATGACTAATGCAGGAGA 59.858 52.381 0.00 0.00 34.67 3.71
455 456 2.492012 GCCATGACTAATGCAGGAGAG 58.508 52.381 4.72 0.00 34.67 3.20
456 457 2.492012 CCATGACTAATGCAGGAGAGC 58.508 52.381 4.72 0.00 34.67 4.09
457 458 2.104451 CCATGACTAATGCAGGAGAGCT 59.896 50.000 4.72 0.00 34.67 4.09
458 459 3.391965 CATGACTAATGCAGGAGAGCTC 58.608 50.000 5.27 5.27 34.99 4.09
459 460 1.406898 TGACTAATGCAGGAGAGCTCG 59.593 52.381 8.37 0.00 34.99 5.03
460 461 0.749649 ACTAATGCAGGAGAGCTCGG 59.250 55.000 8.37 0.62 34.99 4.63
461 462 0.599728 CTAATGCAGGAGAGCTCGGC 60.600 60.000 8.37 11.49 34.99 5.54
462 463 2.355445 TAATGCAGGAGAGCTCGGCG 62.355 60.000 8.37 0.00 34.60 6.46
464 465 4.443266 GCAGGAGAGCTCGGCGTT 62.443 66.667 8.37 0.00 0.00 4.84
465 466 2.507992 CAGGAGAGCTCGGCGTTG 60.508 66.667 8.37 2.20 0.00 4.10
466 467 3.764466 AGGAGAGCTCGGCGTTGG 61.764 66.667 8.37 0.00 0.00 3.77
467 468 4.070552 GGAGAGCTCGGCGTTGGT 62.071 66.667 8.37 6.94 0.00 3.67
468 469 2.048127 GAGAGCTCGGCGTTGGTT 60.048 61.111 8.37 0.00 0.00 3.67
469 470 2.357517 AGAGCTCGGCGTTGGTTG 60.358 61.111 8.37 0.00 0.00 3.77
470 471 2.357034 GAGCTCGGCGTTGGTTGA 60.357 61.111 6.85 0.00 0.00 3.18
471 472 1.741770 GAGCTCGGCGTTGGTTGAT 60.742 57.895 6.85 0.00 0.00 2.57
472 473 1.298859 GAGCTCGGCGTTGGTTGATT 61.299 55.000 6.85 0.00 0.00 2.57
473 474 0.889186 AGCTCGGCGTTGGTTGATTT 60.889 50.000 6.85 0.00 0.00 2.17
474 475 0.039527 GCTCGGCGTTGGTTGATTTT 60.040 50.000 6.85 0.00 0.00 1.82
475 476 1.601914 GCTCGGCGTTGGTTGATTTTT 60.602 47.619 6.85 0.00 0.00 1.94
500 501 9.640963 TTTTCTCTAGCTACTAAGATGTTTCAC 57.359 33.333 0.00 0.00 0.00 3.18
501 502 7.336161 TCTCTAGCTACTAAGATGTTTCACC 57.664 40.000 0.00 0.00 0.00 4.02
502 503 7.120051 TCTCTAGCTACTAAGATGTTTCACCT 58.880 38.462 0.00 0.00 0.00 4.00
503 504 7.616150 TCTCTAGCTACTAAGATGTTTCACCTT 59.384 37.037 0.00 0.00 0.00 3.50
504 505 7.548097 TCTAGCTACTAAGATGTTTCACCTTG 58.452 38.462 0.00 0.00 0.00 3.61
505 506 4.938226 AGCTACTAAGATGTTTCACCTTGC 59.062 41.667 0.00 0.00 0.00 4.01
506 507 4.095036 GCTACTAAGATGTTTCACCTTGCC 59.905 45.833 0.00 0.00 0.00 4.52
507 508 4.098914 ACTAAGATGTTTCACCTTGCCA 57.901 40.909 0.00 0.00 0.00 4.92
508 509 4.074970 ACTAAGATGTTTCACCTTGCCAG 58.925 43.478 0.00 0.00 0.00 4.85
520 521 2.019984 CCTTGCCAGGTTATCTCTTGC 58.980 52.381 0.00 0.00 35.06 4.01
521 522 2.019984 CTTGCCAGGTTATCTCTTGCC 58.980 52.381 0.00 0.00 0.00 4.52
522 523 1.289160 TGCCAGGTTATCTCTTGCCT 58.711 50.000 0.00 0.00 0.00 4.75
523 524 2.477245 TGCCAGGTTATCTCTTGCCTA 58.523 47.619 0.00 0.00 0.00 3.93
524 525 3.048600 TGCCAGGTTATCTCTTGCCTAT 58.951 45.455 0.00 0.00 0.00 2.57
525 526 3.459598 TGCCAGGTTATCTCTTGCCTATT 59.540 43.478 0.00 0.00 0.00 1.73
526 527 4.068599 GCCAGGTTATCTCTTGCCTATTC 58.931 47.826 0.00 0.00 0.00 1.75
527 528 4.444876 GCCAGGTTATCTCTTGCCTATTCA 60.445 45.833 0.00 0.00 0.00 2.57
528 529 5.747248 GCCAGGTTATCTCTTGCCTATTCAT 60.747 44.000 0.00 0.00 0.00 2.57
529 530 5.704515 CCAGGTTATCTCTTGCCTATTCATG 59.295 44.000 0.00 0.00 0.00 3.07
530 531 5.704515 CAGGTTATCTCTTGCCTATTCATGG 59.295 44.000 0.00 0.00 0.00 3.66
531 532 5.608437 AGGTTATCTCTTGCCTATTCATGGA 59.392 40.000 0.00 0.00 0.00 3.41
532 533 6.274200 AGGTTATCTCTTGCCTATTCATGGAT 59.726 38.462 0.00 0.00 0.00 3.41
533 534 6.944862 GGTTATCTCTTGCCTATTCATGGATT 59.055 38.462 0.00 0.00 0.00 3.01
534 535 7.120432 GGTTATCTCTTGCCTATTCATGGATTC 59.880 40.741 0.00 0.00 0.00 2.52
535 536 5.635278 TCTCTTGCCTATTCATGGATTCA 57.365 39.130 0.00 0.00 0.00 2.57
536 537 6.196918 TCTCTTGCCTATTCATGGATTCAT 57.803 37.500 0.00 0.00 0.00 2.57
537 538 6.236409 TCTCTTGCCTATTCATGGATTCATC 58.764 40.000 0.00 0.00 0.00 2.92
538 539 5.944135 TCTTGCCTATTCATGGATTCATCA 58.056 37.500 0.00 0.00 0.00 3.07
539 540 6.549242 TCTTGCCTATTCATGGATTCATCAT 58.451 36.000 0.00 0.00 0.00 2.45
540 541 7.692172 TCTTGCCTATTCATGGATTCATCATA 58.308 34.615 0.00 0.00 0.00 2.15
541 542 7.609146 TCTTGCCTATTCATGGATTCATCATAC 59.391 37.037 0.00 0.00 0.00 2.39
542 543 5.876460 TGCCTATTCATGGATTCATCATACG 59.124 40.000 0.00 0.00 0.00 3.06
543 544 5.295292 GCCTATTCATGGATTCATCATACGG 59.705 44.000 0.00 0.00 0.00 4.02
544 545 6.409704 CCTATTCATGGATTCATCATACGGT 58.590 40.000 0.00 0.00 0.00 4.83
545 546 6.881065 CCTATTCATGGATTCATCATACGGTT 59.119 38.462 0.00 0.00 0.00 4.44
546 547 7.391554 CCTATTCATGGATTCATCATACGGTTT 59.608 37.037 0.00 0.00 0.00 3.27
547 548 7.587037 ATTCATGGATTCATCATACGGTTTT 57.413 32.000 0.00 0.00 0.00 2.43
548 549 8.690203 ATTCATGGATTCATCATACGGTTTTA 57.310 30.769 0.00 0.00 0.00 1.52
549 550 8.512966 TTCATGGATTCATCATACGGTTTTAA 57.487 30.769 0.00 0.00 0.00 1.52
550 551 8.512966 TCATGGATTCATCATACGGTTTTAAA 57.487 30.769 0.00 0.00 0.00 1.52
551 552 8.620416 TCATGGATTCATCATACGGTTTTAAAG 58.380 33.333 0.00 0.00 0.00 1.85
552 553 7.328277 TGGATTCATCATACGGTTTTAAAGG 57.672 36.000 0.00 0.00 0.00 3.11
553 554 6.183360 TGGATTCATCATACGGTTTTAAAGGC 60.183 38.462 0.00 0.00 0.00 4.35
554 555 6.039382 GGATTCATCATACGGTTTTAAAGGCT 59.961 38.462 0.00 0.00 0.00 4.58
555 556 7.227910 GGATTCATCATACGGTTTTAAAGGCTA 59.772 37.037 0.00 0.00 0.00 3.93
556 557 7.925043 TTCATCATACGGTTTTAAAGGCTAA 57.075 32.000 0.00 0.00 0.00 3.09
557 558 7.311364 TCATCATACGGTTTTAAAGGCTAAC 57.689 36.000 0.00 0.00 0.00 2.34
558 559 6.316890 TCATCATACGGTTTTAAAGGCTAACC 59.683 38.462 6.82 6.82 38.33 2.85
798 799 1.059584 TTGTGGGACCCAGCAGAGAA 61.060 55.000 15.52 0.00 32.34 2.87
896 905 2.282251 AGTGACCACGGCGAGAGA 60.282 61.111 16.62 0.00 36.20 3.10
897 906 2.179517 GTGACCACGGCGAGAGAG 59.820 66.667 16.62 0.00 0.00 3.20
898 907 2.033602 TGACCACGGCGAGAGAGA 59.966 61.111 16.62 0.00 0.00 3.10
899 908 2.041115 TGACCACGGCGAGAGAGAG 61.041 63.158 16.62 0.00 0.00 3.20
1013 1023 2.354103 CGAGCTCCATGTCTTCCTCAAA 60.354 50.000 8.47 0.00 0.00 2.69
1080 1090 1.583495 ATGTCTTCGTCTGTCCGCGA 61.583 55.000 8.23 0.00 35.17 5.87
1137 1148 0.179108 CGAGGAACCAGAATCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
1182 1193 1.021202 TAAGAATCGGGGCAATTGCG 58.979 50.000 23.48 10.69 43.26 4.85
1262 1273 2.297033 TGACATGCTTCTTTCTTTGGGC 59.703 45.455 0.00 0.00 0.00 5.36
1321 1332 4.660168 AGAAGAGCATGAAGAATGGTTGT 58.340 39.130 0.00 0.00 46.95 3.32
1538 1550 8.855110 ACTGGTTGTAATGTTGAAAATGTATGA 58.145 29.630 0.00 0.00 0.00 2.15
1614 1626 9.198475 TCCACCTAGTTTAAATGTTGGTTAAAA 57.802 29.630 0.00 0.00 33.45 1.52
2032 2054 3.229293 TGTCATGGAAAATGTGCCTCAA 58.771 40.909 0.00 0.00 0.00 3.02
2037 2059 4.365514 TGGAAAATGTGCCTCAACTCTA 57.634 40.909 0.00 0.00 0.00 2.43
2054 2076 4.338879 ACTCTAGTAGAGGTTTACGCCAA 58.661 43.478 27.07 0.00 46.45 4.52
2450 2477 2.293399 GGTTAGAGTGGCACTTGGTTTG 59.707 50.000 22.98 0.00 0.00 2.93
2460 2487 4.349342 TGGCACTTGGTTTGGGATTTAAAT 59.651 37.500 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 8.006298 TGAAAGTCAAGGTTCACATTTTATGT 57.994 30.769 0.00 0.00 46.22 2.29
78 79 8.918658 CATGAAAGTCAAGGTTCACATTTTATG 58.081 33.333 0.00 0.00 36.62 1.90
79 80 8.859090 TCATGAAAGTCAAGGTTCACATTTTAT 58.141 29.630 0.00 0.00 36.62 1.40
80 81 8.231692 TCATGAAAGTCAAGGTTCACATTTTA 57.768 30.769 0.00 0.00 36.62 1.52
81 82 7.111247 TCATGAAAGTCAAGGTTCACATTTT 57.889 32.000 0.00 0.00 36.62 1.82
82 83 6.713762 TCATGAAAGTCAAGGTTCACATTT 57.286 33.333 0.00 0.00 36.62 2.32
83 84 6.713762 TTCATGAAAGTCAAGGTTCACATT 57.286 33.333 5.45 0.00 36.62 2.71
84 85 6.713762 TTTCATGAAAGTCAAGGTTCACAT 57.286 33.333 16.91 0.00 36.62 3.21
85 86 6.522625 TTTTCATGAAAGTCAAGGTTCACA 57.477 33.333 19.64 0.00 36.62 3.58
86 87 7.168135 GTGATTTTCATGAAAGTCAAGGTTCAC 59.832 37.037 34.46 22.53 44.68 3.18
87 88 7.068593 AGTGATTTTCATGAAAGTCAAGGTTCA 59.931 33.333 34.46 17.24 44.68 3.18
88 89 7.428826 AGTGATTTTCATGAAAGTCAAGGTTC 58.571 34.615 34.46 25.20 44.68 3.62
89 90 7.352079 AGTGATTTTCATGAAAGTCAAGGTT 57.648 32.000 34.46 22.37 44.68 3.50
90 91 6.966534 AGTGATTTTCATGAAAGTCAAGGT 57.033 33.333 34.46 23.78 44.68 3.50
91 92 7.487189 GCATAGTGATTTTCATGAAAGTCAAGG 59.513 37.037 34.46 25.96 44.68 3.61
92 93 8.024865 TGCATAGTGATTTTCATGAAAGTCAAG 58.975 33.333 34.46 26.47 44.68 3.02
93 94 7.809331 GTGCATAGTGATTTTCATGAAAGTCAA 59.191 33.333 34.46 25.25 44.68 3.18
94 95 7.040548 TGTGCATAGTGATTTTCATGAAAGTCA 60.041 33.333 31.26 31.26 42.26 3.41
95 96 7.307694 TGTGCATAGTGATTTTCATGAAAGTC 58.692 34.615 27.76 27.76 37.49 3.01
96 97 7.218228 TGTGCATAGTGATTTTCATGAAAGT 57.782 32.000 19.64 17.50 0.00 2.66
97 98 8.697846 AATGTGCATAGTGATTTTCATGAAAG 57.302 30.769 19.64 7.99 0.00 2.62
104 105 9.630098 CCCATAATAATGTGCATAGTGATTTTC 57.370 33.333 0.00 0.00 0.00 2.29
105 106 8.587608 CCCCATAATAATGTGCATAGTGATTTT 58.412 33.333 0.00 0.00 0.00 1.82
106 107 7.309990 GCCCCATAATAATGTGCATAGTGATTT 60.310 37.037 0.00 0.00 32.21 2.17
107 108 6.153340 GCCCCATAATAATGTGCATAGTGATT 59.847 38.462 0.00 0.00 32.21 2.57
108 109 5.653769 GCCCCATAATAATGTGCATAGTGAT 59.346 40.000 0.00 0.00 32.21 3.06
109 110 5.009631 GCCCCATAATAATGTGCATAGTGA 58.990 41.667 0.00 0.00 32.21 3.41
110 111 4.766373 TGCCCCATAATAATGTGCATAGTG 59.234 41.667 0.00 0.00 35.34 2.74
111 112 4.996793 TGCCCCATAATAATGTGCATAGT 58.003 39.130 0.00 0.00 35.34 2.12
112 113 5.255687 TCTGCCCCATAATAATGTGCATAG 58.744 41.667 0.00 0.00 37.93 2.23
113 114 5.014018 TCTCTGCCCCATAATAATGTGCATA 59.986 40.000 0.00 0.00 37.93 3.14
114 115 4.084287 CTCTGCCCCATAATAATGTGCAT 58.916 43.478 0.00 0.00 37.93 3.96
115 116 3.138098 TCTCTGCCCCATAATAATGTGCA 59.862 43.478 0.00 0.00 36.91 4.57
116 117 3.754965 TCTCTGCCCCATAATAATGTGC 58.245 45.455 0.00 0.00 32.43 4.57
117 118 5.221803 ACTCTCTCTGCCCCATAATAATGTG 60.222 44.000 0.00 0.00 0.00 3.21
118 119 4.910304 ACTCTCTCTGCCCCATAATAATGT 59.090 41.667 0.00 0.00 0.00 2.71
119 120 5.495926 ACTCTCTCTGCCCCATAATAATG 57.504 43.478 0.00 0.00 0.00 1.90
120 121 5.485708 GGTACTCTCTCTGCCCCATAATAAT 59.514 44.000 0.00 0.00 0.00 1.28
121 122 4.838986 GGTACTCTCTCTGCCCCATAATAA 59.161 45.833 0.00 0.00 0.00 1.40
122 123 4.140782 TGGTACTCTCTCTGCCCCATAATA 60.141 45.833 0.00 0.00 0.00 0.98
123 124 3.243724 GGTACTCTCTCTGCCCCATAAT 58.756 50.000 0.00 0.00 0.00 1.28
124 125 2.023404 TGGTACTCTCTCTGCCCCATAA 60.023 50.000 0.00 0.00 0.00 1.90
125 126 1.573857 TGGTACTCTCTCTGCCCCATA 59.426 52.381 0.00 0.00 0.00 2.74
126 127 0.339859 TGGTACTCTCTCTGCCCCAT 59.660 55.000 0.00 0.00 0.00 4.00
127 128 0.339859 ATGGTACTCTCTCTGCCCCA 59.660 55.000 0.00 0.00 0.00 4.96
128 129 0.755686 CATGGTACTCTCTCTGCCCC 59.244 60.000 0.00 0.00 0.00 5.80
129 130 1.490574 ACATGGTACTCTCTCTGCCC 58.509 55.000 0.00 0.00 0.00 5.36
130 131 4.737855 TTAACATGGTACTCTCTCTGCC 57.262 45.455 0.00 0.00 0.00 4.85
131 132 7.439655 CCTTTATTAACATGGTACTCTCTCTGC 59.560 40.741 0.00 0.00 0.00 4.26
132 133 8.696374 TCCTTTATTAACATGGTACTCTCTCTG 58.304 37.037 0.00 0.00 0.00 3.35
133 134 8.840200 TCCTTTATTAACATGGTACTCTCTCT 57.160 34.615 0.00 0.00 0.00 3.10
134 135 9.699703 GATCCTTTATTAACATGGTACTCTCTC 57.300 37.037 0.00 0.00 0.00 3.20
135 136 9.213777 TGATCCTTTATTAACATGGTACTCTCT 57.786 33.333 0.00 0.00 0.00 3.10
136 137 9.832445 TTGATCCTTTATTAACATGGTACTCTC 57.168 33.333 0.00 0.00 0.00 3.20
155 156 9.471702 ACAATTCTGAAACATATCTTTGATCCT 57.528 29.630 0.00 0.00 0.00 3.24
156 157 9.512435 CACAATTCTGAAACATATCTTTGATCC 57.488 33.333 0.00 0.00 0.00 3.36
159 160 9.065798 TGACACAATTCTGAAACATATCTTTGA 57.934 29.630 0.00 0.00 0.00 2.69
160 161 9.681692 TTGACACAATTCTGAAACATATCTTTG 57.318 29.630 0.00 0.00 0.00 2.77
191 192 8.485392 TCCTTGAGTTCAAAGGAAATGATTTTT 58.515 29.630 2.43 0.00 35.15 1.94
192 193 8.021898 TCCTTGAGTTCAAAGGAAATGATTTT 57.978 30.769 2.43 0.00 35.15 1.82
193 194 7.288621 ACTCCTTGAGTTCAAAGGAAATGATTT 59.711 33.333 6.39 0.00 40.28 2.17
194 195 6.779539 ACTCCTTGAGTTCAAAGGAAATGATT 59.220 34.615 6.39 0.00 40.28 2.57
195 196 6.310149 ACTCCTTGAGTTCAAAGGAAATGAT 58.690 36.000 6.39 0.00 40.28 2.45
196 197 5.694995 ACTCCTTGAGTTCAAAGGAAATGA 58.305 37.500 6.39 0.00 40.28 2.57
197 198 7.693969 ATACTCCTTGAGTTCAAAGGAAATG 57.306 36.000 1.58 0.00 40.28 2.32
198 199 9.807921 TTAATACTCCTTGAGTTCAAAGGAAAT 57.192 29.630 1.58 1.35 40.28 2.17
199 200 9.063615 GTTAATACTCCTTGAGTTCAAAGGAAA 57.936 33.333 1.58 0.00 40.28 3.13
200 201 8.215050 TGTTAATACTCCTTGAGTTCAAAGGAA 58.785 33.333 1.58 0.00 40.28 3.36
201 202 7.741785 TGTTAATACTCCTTGAGTTCAAAGGA 58.258 34.615 1.58 4.90 40.28 3.36
202 203 7.979444 TGTTAATACTCCTTGAGTTCAAAGG 57.021 36.000 1.58 0.00 40.28 3.11
261 262 8.956426 ACACAGACTGTTCTATCAAAAGAAAAA 58.044 29.630 5.04 0.00 37.24 1.94
262 263 8.397906 CACACAGACTGTTCTATCAAAAGAAAA 58.602 33.333 5.04 0.00 37.24 2.29
263 264 7.012327 CCACACAGACTGTTCTATCAAAAGAAA 59.988 37.037 5.04 0.00 37.24 2.52
264 265 6.483307 CCACACAGACTGTTCTATCAAAAGAA 59.517 38.462 5.04 0.00 33.10 2.52
265 266 5.991606 CCACACAGACTGTTCTATCAAAAGA 59.008 40.000 5.04 0.00 0.00 2.52
266 267 5.991606 TCCACACAGACTGTTCTATCAAAAG 59.008 40.000 5.04 0.00 0.00 2.27
267 268 5.924356 TCCACACAGACTGTTCTATCAAAA 58.076 37.500 5.04 0.00 0.00 2.44
268 269 5.304357 TCTCCACACAGACTGTTCTATCAAA 59.696 40.000 5.04 0.00 0.00 2.69
269 270 4.832823 TCTCCACACAGACTGTTCTATCAA 59.167 41.667 5.04 0.00 0.00 2.57
270 271 4.407365 TCTCCACACAGACTGTTCTATCA 58.593 43.478 5.04 0.00 0.00 2.15
271 272 5.126222 TCATCTCCACACAGACTGTTCTATC 59.874 44.000 5.04 0.00 0.00 2.08
272 273 5.019470 TCATCTCCACACAGACTGTTCTAT 58.981 41.667 5.04 0.00 0.00 1.98
273 274 4.218635 GTCATCTCCACACAGACTGTTCTA 59.781 45.833 5.04 0.00 0.00 2.10
274 275 3.006323 GTCATCTCCACACAGACTGTTCT 59.994 47.826 5.04 0.00 0.00 3.01
275 276 3.243873 TGTCATCTCCACACAGACTGTTC 60.244 47.826 5.04 0.00 0.00 3.18
276 277 2.700371 TGTCATCTCCACACAGACTGTT 59.300 45.455 5.04 0.00 0.00 3.16
277 278 2.319844 TGTCATCTCCACACAGACTGT 58.680 47.619 1.07 1.07 0.00 3.55
278 279 3.606595 ATGTCATCTCCACACAGACTG 57.393 47.619 0.00 0.00 0.00 3.51
279 280 3.580022 TGAATGTCATCTCCACACAGACT 59.420 43.478 0.00 0.00 0.00 3.24
280 281 3.930336 TGAATGTCATCTCCACACAGAC 58.070 45.455 0.00 0.00 0.00 3.51
281 282 3.618263 GCTGAATGTCATCTCCACACAGA 60.618 47.826 0.00 0.00 0.00 3.41
282 283 2.676839 GCTGAATGTCATCTCCACACAG 59.323 50.000 0.00 0.00 0.00 3.66
283 284 2.303890 AGCTGAATGTCATCTCCACACA 59.696 45.455 0.00 0.00 0.00 3.72
284 285 2.983229 AGCTGAATGTCATCTCCACAC 58.017 47.619 0.00 0.00 0.00 3.82
285 286 3.708403 AAGCTGAATGTCATCTCCACA 57.292 42.857 0.00 0.00 0.00 4.17
286 287 4.333926 GGTAAAGCTGAATGTCATCTCCAC 59.666 45.833 0.00 0.00 0.00 4.02
287 288 4.225942 AGGTAAAGCTGAATGTCATCTCCA 59.774 41.667 0.00 0.00 0.00 3.86
288 289 4.775236 AGGTAAAGCTGAATGTCATCTCC 58.225 43.478 0.00 0.00 0.00 3.71
289 290 5.423015 TGAGGTAAAGCTGAATGTCATCTC 58.577 41.667 0.00 0.00 0.00 2.75
290 291 5.426689 TGAGGTAAAGCTGAATGTCATCT 57.573 39.130 0.00 0.00 0.00 2.90
291 292 5.505324 GCATGAGGTAAAGCTGAATGTCATC 60.505 44.000 0.00 0.00 0.00 2.92
292 293 4.337555 GCATGAGGTAAAGCTGAATGTCAT 59.662 41.667 0.00 0.00 0.00 3.06
293 294 3.691118 GCATGAGGTAAAGCTGAATGTCA 59.309 43.478 0.00 0.00 0.00 3.58
294 295 3.944015 AGCATGAGGTAAAGCTGAATGTC 59.056 43.478 0.00 0.00 35.72 3.06
295 296 3.944015 GAGCATGAGGTAAAGCTGAATGT 59.056 43.478 0.00 0.00 37.48 2.71
296 297 4.197750 AGAGCATGAGGTAAAGCTGAATG 58.802 43.478 0.00 0.00 37.48 2.67
297 298 4.500499 AGAGCATGAGGTAAAGCTGAAT 57.500 40.909 0.00 0.00 37.48 2.57
298 299 3.988976 AGAGCATGAGGTAAAGCTGAA 57.011 42.857 0.00 0.00 37.48 3.02
299 300 3.181471 GCTAGAGCATGAGGTAAAGCTGA 60.181 47.826 0.00 0.00 41.59 4.26
300 301 3.129871 GCTAGAGCATGAGGTAAAGCTG 58.870 50.000 0.00 0.00 41.59 4.24
301 302 3.037549 AGCTAGAGCATGAGGTAAAGCT 58.962 45.455 4.01 0.00 45.16 3.74
302 303 3.129871 CAGCTAGAGCATGAGGTAAAGC 58.870 50.000 4.01 0.00 45.16 3.51
303 304 4.118410 CACAGCTAGAGCATGAGGTAAAG 58.882 47.826 4.01 0.00 45.16 1.85
304 305 3.679917 GCACAGCTAGAGCATGAGGTAAA 60.680 47.826 4.01 0.00 45.16 2.01
305 306 2.159043 GCACAGCTAGAGCATGAGGTAA 60.159 50.000 4.01 0.00 45.16 2.85
306 307 1.410517 GCACAGCTAGAGCATGAGGTA 59.589 52.381 4.01 0.00 45.16 3.08
307 308 0.177604 GCACAGCTAGAGCATGAGGT 59.822 55.000 4.01 0.00 45.16 3.85
308 309 0.177373 TGCACAGCTAGAGCATGAGG 59.823 55.000 4.01 0.35 45.16 3.86
309 310 1.134759 ACTGCACAGCTAGAGCATGAG 60.135 52.381 4.01 4.61 42.94 2.90
310 311 0.900421 ACTGCACAGCTAGAGCATGA 59.100 50.000 4.01 0.00 42.94 3.07
311 312 1.735386 AACTGCACAGCTAGAGCATG 58.265 50.000 4.01 3.03 42.94 4.06
312 313 2.486472 AAACTGCACAGCTAGAGCAT 57.514 45.000 4.01 0.00 42.94 3.79
313 314 3.196469 AGATAAACTGCACAGCTAGAGCA 59.804 43.478 4.01 6.71 45.16 4.26
314 315 3.791245 AGATAAACTGCACAGCTAGAGC 58.209 45.455 0.00 0.00 42.49 4.09
315 316 4.142071 TGGAGATAAACTGCACAGCTAGAG 60.142 45.833 0.00 0.00 41.81 2.43
316 317 3.769300 TGGAGATAAACTGCACAGCTAGA 59.231 43.478 0.00 0.00 41.81 2.43
317 318 4.128925 TGGAGATAAACTGCACAGCTAG 57.871 45.455 0.00 0.00 41.81 3.42
325 326 6.317140 TCAGATGACAAATGGAGATAAACTGC 59.683 38.462 0.00 0.00 37.47 4.40
326 327 7.551974 ACTCAGATGACAAATGGAGATAAACTG 59.448 37.037 0.00 0.00 0.00 3.16
327 328 7.628234 ACTCAGATGACAAATGGAGATAAACT 58.372 34.615 0.00 0.00 0.00 2.66
328 329 7.856145 ACTCAGATGACAAATGGAGATAAAC 57.144 36.000 0.00 0.00 0.00 2.01
329 330 8.868522 AAACTCAGATGACAAATGGAGATAAA 57.131 30.769 0.00 0.00 0.00 1.40
330 331 8.733458 CAAAACTCAGATGACAAATGGAGATAA 58.267 33.333 0.00 0.00 0.00 1.75
331 332 8.102676 TCAAAACTCAGATGACAAATGGAGATA 58.897 33.333 0.00 0.00 0.00 1.98
332 333 6.944290 TCAAAACTCAGATGACAAATGGAGAT 59.056 34.615 0.00 0.00 0.00 2.75
333 334 6.298361 TCAAAACTCAGATGACAAATGGAGA 58.702 36.000 0.00 0.00 0.00 3.71
334 335 6.564709 TCAAAACTCAGATGACAAATGGAG 57.435 37.500 0.00 0.00 0.00 3.86
335 336 6.320926 TGTTCAAAACTCAGATGACAAATGGA 59.679 34.615 0.00 0.00 0.00 3.41
336 337 6.506147 TGTTCAAAACTCAGATGACAAATGG 58.494 36.000 0.00 0.00 0.00 3.16
337 338 7.863877 TCATGTTCAAAACTCAGATGACAAATG 59.136 33.333 0.00 0.00 0.00 2.32
338 339 7.864379 GTCATGTTCAAAACTCAGATGACAAAT 59.136 33.333 0.00 0.00 39.22 2.32
339 340 7.148103 TGTCATGTTCAAAACTCAGATGACAAA 60.148 33.333 15.54 1.75 42.79 2.83
340 341 6.318396 TGTCATGTTCAAAACTCAGATGACAA 59.682 34.615 15.54 5.74 42.79 3.18
341 342 5.821995 TGTCATGTTCAAAACTCAGATGACA 59.178 36.000 14.59 14.59 43.15 3.58
342 343 6.304356 TGTCATGTTCAAAACTCAGATGAC 57.696 37.500 0.00 0.00 39.56 3.06
343 344 6.940831 TTGTCATGTTCAAAACTCAGATGA 57.059 33.333 0.00 0.00 0.00 2.92
344 345 8.583810 AAATTGTCATGTTCAAAACTCAGATG 57.416 30.769 9.29 0.00 0.00 2.90
345 346 7.869429 GGAAATTGTCATGTTCAAAACTCAGAT 59.131 33.333 9.29 0.00 0.00 2.90
346 347 7.068593 AGGAAATTGTCATGTTCAAAACTCAGA 59.931 33.333 9.29 0.00 0.00 3.27
347 348 7.205297 AGGAAATTGTCATGTTCAAAACTCAG 58.795 34.615 9.29 0.00 0.00 3.35
348 349 7.111247 AGGAAATTGTCATGTTCAAAACTCA 57.889 32.000 9.29 0.00 0.00 3.41
349 350 6.642540 GGAGGAAATTGTCATGTTCAAAACTC 59.357 38.462 9.29 11.99 0.00 3.01
350 351 6.098124 TGGAGGAAATTGTCATGTTCAAAACT 59.902 34.615 9.29 6.34 0.00 2.66
351 352 6.279882 TGGAGGAAATTGTCATGTTCAAAAC 58.720 36.000 9.29 5.40 0.00 2.43
352 353 6.477053 TGGAGGAAATTGTCATGTTCAAAA 57.523 33.333 9.29 0.00 0.00 2.44
353 354 6.267242 TGATGGAGGAAATTGTCATGTTCAAA 59.733 34.615 9.29 0.00 0.00 2.69
354 355 5.774184 TGATGGAGGAAATTGTCATGTTCAA 59.226 36.000 8.07 8.07 0.00 2.69
355 356 5.323581 TGATGGAGGAAATTGTCATGTTCA 58.676 37.500 0.00 0.00 0.00 3.18
356 357 5.902613 TGATGGAGGAAATTGTCATGTTC 57.097 39.130 0.00 0.00 0.00 3.18
357 358 5.776716 ACTTGATGGAGGAAATTGTCATGTT 59.223 36.000 0.00 0.00 0.00 2.71
358 359 5.184479 CACTTGATGGAGGAAATTGTCATGT 59.816 40.000 0.00 0.00 0.00 3.21
359 360 5.184479 ACACTTGATGGAGGAAATTGTCATG 59.816 40.000 0.00 0.00 0.00 3.07
360 361 5.327732 ACACTTGATGGAGGAAATTGTCAT 58.672 37.500 0.00 0.00 0.00 3.06
361 362 4.728772 ACACTTGATGGAGGAAATTGTCA 58.271 39.130 0.00 0.00 0.00 3.58
362 363 5.006386 AGACACTTGATGGAGGAAATTGTC 58.994 41.667 0.00 0.00 35.11 3.18
363 364 4.990526 AGACACTTGATGGAGGAAATTGT 58.009 39.130 0.00 0.00 0.00 2.71
364 365 5.391310 CGAAGACACTTGATGGAGGAAATTG 60.391 44.000 0.00 0.00 0.00 2.32
365 366 4.697352 CGAAGACACTTGATGGAGGAAATT 59.303 41.667 0.00 0.00 0.00 1.82
366 367 4.020218 TCGAAGACACTTGATGGAGGAAAT 60.020 41.667 0.00 0.00 0.00 2.17
367 368 3.323691 TCGAAGACACTTGATGGAGGAAA 59.676 43.478 0.00 0.00 0.00 3.13
368 369 2.897326 TCGAAGACACTTGATGGAGGAA 59.103 45.455 0.00 0.00 0.00 3.36
369 370 2.525368 TCGAAGACACTTGATGGAGGA 58.475 47.619 0.00 0.00 0.00 3.71
370 371 3.131933 AGATCGAAGACACTTGATGGAGG 59.868 47.826 0.00 0.00 42.51 4.30
371 372 4.383850 AGATCGAAGACACTTGATGGAG 57.616 45.455 0.00 0.00 42.51 3.86
372 373 5.193679 TCTAGATCGAAGACACTTGATGGA 58.806 41.667 0.00 0.00 42.51 3.41
373 374 5.506686 TCTAGATCGAAGACACTTGATGG 57.493 43.478 0.00 0.00 42.51 3.51
374 375 5.067153 ACCTCTAGATCGAAGACACTTGATG 59.933 44.000 0.00 0.00 42.51 3.07
375 376 5.197451 ACCTCTAGATCGAAGACACTTGAT 58.803 41.667 0.00 0.00 42.51 2.57
376 377 4.590918 ACCTCTAGATCGAAGACACTTGA 58.409 43.478 0.00 0.00 42.51 3.02
377 378 4.974368 ACCTCTAGATCGAAGACACTTG 57.026 45.455 0.00 0.00 42.51 3.16
378 379 5.477291 TGAAACCTCTAGATCGAAGACACTT 59.523 40.000 0.00 0.00 42.51 3.16
379 380 5.010933 TGAAACCTCTAGATCGAAGACACT 58.989 41.667 0.00 0.00 42.51 3.55
380 381 5.312120 TGAAACCTCTAGATCGAAGACAC 57.688 43.478 0.00 0.00 42.51 3.67
381 382 5.977489 TTGAAACCTCTAGATCGAAGACA 57.023 39.130 0.00 0.00 42.51 3.41
382 383 5.233263 GCATTGAAACCTCTAGATCGAAGAC 59.767 44.000 0.00 0.00 42.51 3.01
383 384 5.127845 AGCATTGAAACCTCTAGATCGAAGA 59.872 40.000 0.00 1.54 45.75 2.87
384 385 5.355596 AGCATTGAAACCTCTAGATCGAAG 58.644 41.667 0.00 0.00 0.00 3.79
385 386 5.344743 AGCATTGAAACCTCTAGATCGAA 57.655 39.130 0.00 0.00 0.00 3.71
386 387 5.594725 AGTAGCATTGAAACCTCTAGATCGA 59.405 40.000 0.00 0.00 0.00 3.59
387 388 5.689514 CAGTAGCATTGAAACCTCTAGATCG 59.310 44.000 0.00 0.00 0.00 3.69
388 389 5.988561 CCAGTAGCATTGAAACCTCTAGATC 59.011 44.000 0.00 0.00 0.00 2.75
389 390 5.426833 ACCAGTAGCATTGAAACCTCTAGAT 59.573 40.000 0.00 0.00 0.00 1.98
390 391 4.777896 ACCAGTAGCATTGAAACCTCTAGA 59.222 41.667 0.00 0.00 0.00 2.43
391 392 5.091261 ACCAGTAGCATTGAAACCTCTAG 57.909 43.478 0.00 0.00 0.00 2.43
392 393 5.499004 AACCAGTAGCATTGAAACCTCTA 57.501 39.130 0.00 0.00 0.00 2.43
393 394 4.373156 AACCAGTAGCATTGAAACCTCT 57.627 40.909 0.00 0.00 0.00 3.69
394 395 4.798574 CAAACCAGTAGCATTGAAACCTC 58.201 43.478 0.00 0.00 0.00 3.85
395 396 3.005791 GCAAACCAGTAGCATTGAAACCT 59.994 43.478 0.00 0.00 0.00 3.50
396 397 3.317150 GCAAACCAGTAGCATTGAAACC 58.683 45.455 0.00 0.00 0.00 3.27
397 398 2.979813 CGCAAACCAGTAGCATTGAAAC 59.020 45.455 0.00 0.00 0.00 2.78
398 399 2.621055 ACGCAAACCAGTAGCATTGAAA 59.379 40.909 0.00 0.00 0.00 2.69
399 400 2.225491 GACGCAAACCAGTAGCATTGAA 59.775 45.455 0.00 0.00 0.00 2.69
400 401 1.804151 GACGCAAACCAGTAGCATTGA 59.196 47.619 0.00 0.00 0.00 2.57
401 402 1.806542 AGACGCAAACCAGTAGCATTG 59.193 47.619 0.00 0.00 0.00 2.82
402 403 2.076863 GAGACGCAAACCAGTAGCATT 58.923 47.619 0.00 0.00 0.00 3.56
403 404 1.726853 GAGACGCAAACCAGTAGCAT 58.273 50.000 0.00 0.00 0.00 3.79
404 405 0.666274 CGAGACGCAAACCAGTAGCA 60.666 55.000 0.00 0.00 0.00 3.49
405 406 1.352156 CCGAGACGCAAACCAGTAGC 61.352 60.000 0.00 0.00 0.00 3.58
406 407 0.736325 CCCGAGACGCAAACCAGTAG 60.736 60.000 0.00 0.00 0.00 2.57
407 408 1.290955 CCCGAGACGCAAACCAGTA 59.709 57.895 0.00 0.00 0.00 2.74
408 409 2.030562 CCCGAGACGCAAACCAGT 59.969 61.111 0.00 0.00 0.00 4.00
409 410 2.027625 GACCCGAGACGCAAACCAG 61.028 63.158 0.00 0.00 0.00 4.00
410 411 2.029964 GACCCGAGACGCAAACCA 59.970 61.111 0.00 0.00 0.00 3.67
411 412 3.110178 CGACCCGAGACGCAAACC 61.110 66.667 0.00 0.00 0.00 3.27
412 413 3.110178 CCGACCCGAGACGCAAAC 61.110 66.667 0.00 0.00 0.00 2.93
413 414 3.608662 ACCGACCCGAGACGCAAA 61.609 61.111 0.00 0.00 0.00 3.68
414 415 4.351938 CACCGACCCGAGACGCAA 62.352 66.667 0.00 0.00 0.00 4.85
417 418 4.415332 CACCACCGACCCGAGACG 62.415 72.222 0.00 0.00 0.00 4.18
418 419 4.065281 CCACCACCGACCCGAGAC 62.065 72.222 0.00 0.00 0.00 3.36
424 425 4.028490 TCATGGCCACCACCGACC 62.028 66.667 8.16 0.00 35.80 4.79
425 426 1.895020 TAGTCATGGCCACCACCGAC 61.895 60.000 8.16 10.28 38.69 4.79
426 427 1.195442 TTAGTCATGGCCACCACCGA 61.195 55.000 8.16 0.00 35.80 4.69
427 428 0.107214 ATTAGTCATGGCCACCACCG 60.107 55.000 8.16 0.00 35.80 4.94
428 429 1.392589 CATTAGTCATGGCCACCACC 58.607 55.000 8.16 0.00 35.80 4.61
429 430 0.740737 GCATTAGTCATGGCCACCAC 59.259 55.000 8.16 7.87 35.80 4.16
430 431 0.330941 TGCATTAGTCATGGCCACCA 59.669 50.000 8.16 0.00 38.19 4.17
431 432 1.027357 CTGCATTAGTCATGGCCACC 58.973 55.000 8.16 0.00 32.81 4.61
432 433 1.027357 CCTGCATTAGTCATGGCCAC 58.973 55.000 8.16 0.00 32.81 5.01
433 434 0.918258 TCCTGCATTAGTCATGGCCA 59.082 50.000 8.56 8.56 32.81 5.36
434 435 1.141657 TCTCCTGCATTAGTCATGGCC 59.858 52.381 0.00 0.00 32.81 5.36
435 436 2.492012 CTCTCCTGCATTAGTCATGGC 58.508 52.381 0.00 0.00 32.81 4.40
436 437 2.104451 AGCTCTCCTGCATTAGTCATGG 59.896 50.000 0.00 0.00 32.81 3.66
437 438 3.391965 GAGCTCTCCTGCATTAGTCATG 58.608 50.000 6.43 0.00 35.73 3.07
438 439 2.035704 CGAGCTCTCCTGCATTAGTCAT 59.964 50.000 12.85 0.00 34.99 3.06
439 440 1.406898 CGAGCTCTCCTGCATTAGTCA 59.593 52.381 12.85 0.00 34.99 3.41
440 441 1.269517 CCGAGCTCTCCTGCATTAGTC 60.270 57.143 12.85 0.00 34.99 2.59
441 442 0.749649 CCGAGCTCTCCTGCATTAGT 59.250 55.000 12.85 0.00 34.99 2.24
442 443 0.599728 GCCGAGCTCTCCTGCATTAG 60.600 60.000 12.85 0.00 34.99 1.73
443 444 1.443407 GCCGAGCTCTCCTGCATTA 59.557 57.895 12.85 0.00 34.99 1.90
444 445 2.188994 GCCGAGCTCTCCTGCATT 59.811 61.111 12.85 0.00 34.99 3.56
445 446 4.218578 CGCCGAGCTCTCCTGCAT 62.219 66.667 12.85 0.00 34.99 3.96
447 448 4.443266 AACGCCGAGCTCTCCTGC 62.443 66.667 12.85 8.12 0.00 4.85
448 449 2.507992 CAACGCCGAGCTCTCCTG 60.508 66.667 12.85 1.36 0.00 3.86
449 450 3.764466 CCAACGCCGAGCTCTCCT 61.764 66.667 12.85 0.00 0.00 3.69
450 451 3.591254 AACCAACGCCGAGCTCTCC 62.591 63.158 12.85 1.10 0.00 3.71
451 452 2.048127 AACCAACGCCGAGCTCTC 60.048 61.111 12.85 2.37 0.00 3.20
452 453 2.172483 ATCAACCAACGCCGAGCTCT 62.172 55.000 12.85 0.00 0.00 4.09
453 454 1.298859 AATCAACCAACGCCGAGCTC 61.299 55.000 2.73 2.73 0.00 4.09
454 455 0.889186 AAATCAACCAACGCCGAGCT 60.889 50.000 0.00 0.00 0.00 4.09
455 456 0.039527 AAAATCAACCAACGCCGAGC 60.040 50.000 0.00 0.00 0.00 5.03
456 457 2.415697 AAAAATCAACCAACGCCGAG 57.584 45.000 0.00 0.00 0.00 4.63
474 475 9.640963 GTGAAACATCTTAGTAGCTAGAGAAAA 57.359 33.333 0.00 0.00 36.32 2.29
475 476 8.251721 GGTGAAACATCTTAGTAGCTAGAGAAA 58.748 37.037 0.00 0.00 39.98 2.52
476 477 7.616150 AGGTGAAACATCTTAGTAGCTAGAGAA 59.384 37.037 0.00 0.00 39.98 2.87
477 478 7.120051 AGGTGAAACATCTTAGTAGCTAGAGA 58.880 38.462 0.00 0.00 39.98 3.10
478 479 7.341445 AGGTGAAACATCTTAGTAGCTAGAG 57.659 40.000 0.00 0.00 39.98 2.43
479 480 7.548097 CAAGGTGAAACATCTTAGTAGCTAGA 58.452 38.462 0.00 0.00 39.98 2.43
480 481 6.256757 GCAAGGTGAAACATCTTAGTAGCTAG 59.743 42.308 0.00 0.00 39.98 3.42
481 482 6.106673 GCAAGGTGAAACATCTTAGTAGCTA 58.893 40.000 0.00 0.00 39.98 3.32
482 483 4.938226 GCAAGGTGAAACATCTTAGTAGCT 59.062 41.667 0.00 0.00 39.98 3.32
483 484 4.095036 GGCAAGGTGAAACATCTTAGTAGC 59.905 45.833 0.00 0.00 39.98 3.58
484 485 5.245531 TGGCAAGGTGAAACATCTTAGTAG 58.754 41.667 0.00 0.00 39.98 2.57
485 486 5.235850 TGGCAAGGTGAAACATCTTAGTA 57.764 39.130 0.00 0.00 39.98 1.82
486 487 4.074970 CTGGCAAGGTGAAACATCTTAGT 58.925 43.478 0.00 0.00 39.98 2.24
487 488 3.441572 CCTGGCAAGGTGAAACATCTTAG 59.558 47.826 0.00 0.00 39.98 2.18
488 489 3.420893 CCTGGCAAGGTGAAACATCTTA 58.579 45.455 0.00 0.00 39.98 2.10
489 490 2.242043 CCTGGCAAGGTGAAACATCTT 58.758 47.619 0.00 0.00 39.98 2.40
490 491 1.915141 CCTGGCAAGGTGAAACATCT 58.085 50.000 0.00 0.00 39.98 2.90
501 502 2.019984 GGCAAGAGATAACCTGGCAAG 58.980 52.381 0.00 0.00 0.00 4.01
502 503 1.635487 AGGCAAGAGATAACCTGGCAA 59.365 47.619 0.00 0.00 0.00 4.52
503 504 1.289160 AGGCAAGAGATAACCTGGCA 58.711 50.000 0.00 0.00 0.00 4.92
504 505 3.778954 ATAGGCAAGAGATAACCTGGC 57.221 47.619 0.00 0.00 33.60 4.85
505 506 5.296151 TGAATAGGCAAGAGATAACCTGG 57.704 43.478 0.00 0.00 33.60 4.45
506 507 5.704515 CCATGAATAGGCAAGAGATAACCTG 59.295 44.000 0.00 0.00 33.60 4.00
507 508 5.608437 TCCATGAATAGGCAAGAGATAACCT 59.392 40.000 0.00 0.00 36.27 3.50
508 509 5.869579 TCCATGAATAGGCAAGAGATAACC 58.130 41.667 0.00 0.00 0.00 2.85
509 510 7.663081 TGAATCCATGAATAGGCAAGAGATAAC 59.337 37.037 0.00 0.00 0.00 1.89
510 511 7.748677 TGAATCCATGAATAGGCAAGAGATAA 58.251 34.615 0.00 0.00 0.00 1.75
511 512 7.320384 TGAATCCATGAATAGGCAAGAGATA 57.680 36.000 0.00 0.00 0.00 1.98
512 513 6.196918 TGAATCCATGAATAGGCAAGAGAT 57.803 37.500 0.00 0.00 0.00 2.75
513 514 5.635278 TGAATCCATGAATAGGCAAGAGA 57.365 39.130 0.00 0.00 0.00 3.10
514 515 6.002082 TGATGAATCCATGAATAGGCAAGAG 58.998 40.000 0.00 0.00 32.09 2.85
515 516 5.944135 TGATGAATCCATGAATAGGCAAGA 58.056 37.500 0.00 0.00 32.09 3.02
516 517 6.835819 ATGATGAATCCATGAATAGGCAAG 57.164 37.500 0.00 0.00 32.09 4.01
517 518 6.372381 CGTATGATGAATCCATGAATAGGCAA 59.628 38.462 0.00 0.00 32.09 4.52
518 519 5.876460 CGTATGATGAATCCATGAATAGGCA 59.124 40.000 0.00 0.00 32.09 4.75
519 520 5.295292 CCGTATGATGAATCCATGAATAGGC 59.705 44.000 0.00 0.00 32.09 3.93
520 521 6.409704 ACCGTATGATGAATCCATGAATAGG 58.590 40.000 0.00 0.00 32.09 2.57
521 522 7.912056 AACCGTATGATGAATCCATGAATAG 57.088 36.000 0.00 0.00 32.09 1.73
522 523 8.690203 AAAACCGTATGATGAATCCATGAATA 57.310 30.769 0.00 0.00 32.09 1.75
523 524 7.587037 AAAACCGTATGATGAATCCATGAAT 57.413 32.000 0.00 0.00 32.09 2.57
524 525 8.512966 TTAAAACCGTATGATGAATCCATGAA 57.487 30.769 0.00 0.00 32.09 2.57
525 526 8.512966 TTTAAAACCGTATGATGAATCCATGA 57.487 30.769 0.00 0.00 32.09 3.07
526 527 7.862372 CCTTTAAAACCGTATGATGAATCCATG 59.138 37.037 0.00 0.00 32.09 3.66
527 528 7.470009 GCCTTTAAAACCGTATGATGAATCCAT 60.470 37.037 0.00 0.00 35.29 3.41
528 529 6.183360 GCCTTTAAAACCGTATGATGAATCCA 60.183 38.462 0.00 0.00 0.00 3.41
529 530 6.039382 AGCCTTTAAAACCGTATGATGAATCC 59.961 38.462 0.00 0.00 0.00 3.01
530 531 7.027778 AGCCTTTAAAACCGTATGATGAATC 57.972 36.000 0.00 0.00 0.00 2.52
531 532 8.403236 GTTAGCCTTTAAAACCGTATGATGAAT 58.597 33.333 0.00 0.00 0.00 2.57
532 533 7.148205 GGTTAGCCTTTAAAACCGTATGATGAA 60.148 37.037 0.00 0.00 33.85 2.57
533 534 6.316890 GGTTAGCCTTTAAAACCGTATGATGA 59.683 38.462 0.00 0.00 33.85 2.92
534 535 6.317893 AGGTTAGCCTTTAAAACCGTATGATG 59.682 38.462 0.00 0.00 44.18 3.07
535 536 6.420638 AGGTTAGCCTTTAAAACCGTATGAT 58.579 36.000 0.00 0.00 44.18 2.45
536 537 5.807909 AGGTTAGCCTTTAAAACCGTATGA 58.192 37.500 0.00 0.00 44.18 2.15
537 538 7.797038 ATAGGTTAGCCTTTAAAACCGTATG 57.203 36.000 2.41 0.00 44.18 2.39
538 539 8.680001 CAAATAGGTTAGCCTTTAAAACCGTAT 58.320 33.333 2.41 0.00 44.18 3.06
539 540 7.121020 CCAAATAGGTTAGCCTTTAAAACCGTA 59.879 37.037 2.41 0.00 44.18 4.02
540 541 6.071784 CCAAATAGGTTAGCCTTTAAAACCGT 60.072 38.462 2.41 0.00 44.18 4.83
541 542 6.327154 CCAAATAGGTTAGCCTTTAAAACCG 58.673 40.000 2.41 0.00 44.18 4.44
542 543 6.211986 ACCCAAATAGGTTAGCCTTTAAAACC 59.788 38.462 2.41 0.00 44.18 3.27
543 544 7.235935 ACCCAAATAGGTTAGCCTTTAAAAC 57.764 36.000 2.41 0.00 44.18 2.43
544 545 7.616542 CCTACCCAAATAGGTTAGCCTTTAAAA 59.383 37.037 2.41 0.00 44.18 1.52
545 546 7.120716 CCTACCCAAATAGGTTAGCCTTTAAA 58.879 38.462 2.41 0.00 44.18 1.52
546 547 6.354126 CCCTACCCAAATAGGTTAGCCTTTAA 60.354 42.308 2.41 0.00 44.18 1.52
547 548 5.133153 CCCTACCCAAATAGGTTAGCCTTTA 59.867 44.000 2.41 0.00 44.18 1.85
548 549 4.079385 CCCTACCCAAATAGGTTAGCCTTT 60.079 45.833 2.41 0.00 44.18 3.11
549 550 3.462205 CCCTACCCAAATAGGTTAGCCTT 59.538 47.826 2.41 0.00 44.18 4.35
551 552 2.781757 ACCCTACCCAAATAGGTTAGCC 59.218 50.000 0.00 0.00 40.31 3.93
552 553 4.515028 AACCCTACCCAAATAGGTTAGC 57.485 45.455 0.00 0.00 40.31 3.09
555 556 8.229605 GGATAATTAACCCTACCCAAATAGGTT 58.770 37.037 0.24 0.00 40.31 3.50
556 557 7.578940 AGGATAATTAACCCTACCCAAATAGGT 59.421 37.037 8.09 0.00 40.31 3.08
557 558 7.996788 AGGATAATTAACCCTACCCAAATAGG 58.003 38.462 8.09 0.00 41.43 2.57
558 559 9.877222 AAAGGATAATTAACCCTACCCAAATAG 57.123 33.333 8.09 0.00 0.00 1.73
560 561 8.988060 CAAAAGGATAATTAACCCTACCCAAAT 58.012 33.333 8.09 0.00 0.00 2.32
561 562 7.093245 GCAAAAGGATAATTAACCCTACCCAAA 60.093 37.037 8.09 0.00 0.00 3.28
562 563 6.381707 GCAAAAGGATAATTAACCCTACCCAA 59.618 38.462 8.09 0.00 0.00 4.12
563 564 5.894964 GCAAAAGGATAATTAACCCTACCCA 59.105 40.000 8.09 0.00 0.00 4.51
564 565 5.303589 GGCAAAAGGATAATTAACCCTACCC 59.696 44.000 8.09 0.47 0.00 3.69
565 566 5.303589 GGGCAAAAGGATAATTAACCCTACC 59.696 44.000 8.09 8.34 31.84 3.18
566 567 6.134055 AGGGCAAAAGGATAATTAACCCTAC 58.866 40.000 8.09 1.34 43.36 3.18
815 816 0.544223 ATATAGCACACCCGCCAACA 59.456 50.000 0.00 0.00 0.00 3.33
896 905 3.137459 CCGCCGTGCTCTCTCTCT 61.137 66.667 0.00 0.00 0.00 3.10
897 906 4.863925 GCCGCCGTGCTCTCTCTC 62.864 72.222 0.00 0.00 0.00 3.20
1137 1148 0.109735 TCTCGCTGCACACGTAGAAG 60.110 55.000 0.00 0.00 0.00 2.85
1182 1193 1.405463 GATCCCGACCAAGAAAATGGC 59.595 52.381 0.00 0.00 44.75 4.40
1262 1273 1.817099 GTCTTGGCCTGAGCATCGG 60.817 63.158 3.32 0.00 42.56 4.18
1271 1282 2.842496 TCATTCATCAGAGTCTTGGCCT 59.158 45.455 3.32 0.00 0.00 5.19
1538 1550 7.441903 AATTCCTCCATAATTCATGCCTTTT 57.558 32.000 0.00 0.00 32.84 2.27
1574 1586 8.934023 AAACTAGGTGGATTTCTCAAACAATA 57.066 30.769 0.00 0.00 0.00 1.90
1765 1779 2.233676 TGGCTCTACGCTCTGAATTTGA 59.766 45.455 0.00 0.00 39.13 2.69
1964 1978 8.806634 CACGGTGTATTTGAATTGGATTAATTG 58.193 33.333 0.00 0.00 39.06 2.32
2032 2054 3.960571 TGGCGTAAACCTCTACTAGAGT 58.039 45.455 11.46 0.00 40.72 3.24
2037 2059 2.612221 GCACTTGGCGTAAACCTCTACT 60.612 50.000 0.00 0.00 0.00 2.57
2460 2487 9.368674 CATGAACTAACATGCAAATTTATTCCA 57.631 29.630 0.00 0.00 40.54 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.