Multiple sequence alignment - TraesCS4A01G035700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G035700 chr4A 100.000 6485 0 0 1 6485 28253604 28247120 0.000000e+00 11976.0
1 TraesCS4A01G035700 chr4A 89.704 2195 146 50 2766 4929 27684623 27682478 0.000000e+00 2728.0
2 TraesCS4A01G035700 chr4A 91.014 345 31 0 4986 5330 27682457 27682113 3.540000e-127 466.0
3 TraesCS4A01G035700 chr4A 90.805 261 22 1 2082 2342 27685124 27684866 1.340000e-91 348.0
4 TraesCS4A01G035700 chr4A 76.518 626 71 44 828 1425 27686561 27685984 8.290000e-69 272.0
5 TraesCS4A01G035700 chr4A 98.214 112 2 0 1846 1957 239632819 239632708 5.130000e-46 196.0
6 TraesCS4A01G035700 chr4A 93.548 124 8 0 1834 1957 574539870 574539993 1.110000e-42 185.0
7 TraesCS4A01G035700 chr4A 98.667 75 1 0 5854 5928 28247680 28247606 4.080000e-27 134.0
8 TraesCS4A01G035700 chr4A 98.667 75 1 0 5925 5999 28247751 28247677 4.080000e-27 134.0
9 TraesCS4A01G035700 chr4A 97.500 40 1 0 2653 2692 27684691 27684652 1.170000e-07 69.4
10 TraesCS4A01G035700 chr4D 96.061 2767 86 6 2816 5563 438792657 438789895 0.000000e+00 4484.0
11 TraesCS4A01G035700 chr4D 89.071 2324 187 47 2637 4929 438259482 438257195 0.000000e+00 2822.0
12 TraesCS4A01G035700 chr4D 92.397 1210 51 16 681 1852 438794607 438793401 0.000000e+00 1687.0
13 TraesCS4A01G035700 chr4D 91.785 706 29 13 1955 2631 438793403 438792698 0.000000e+00 955.0
14 TraesCS4A01G035700 chr4D 88.210 704 57 12 7 688 438799151 438798452 0.000000e+00 817.0
15 TraesCS4A01G035700 chr4D 94.375 480 24 3 5959 6437 438788084 438787607 0.000000e+00 734.0
16 TraesCS4A01G035700 chr4D 88.740 373 41 1 4959 5330 438257193 438256821 7.670000e-124 455.0
17 TraesCS4A01G035700 chr4D 77.114 603 70 42 842 1423 438261356 438260801 2.960000e-73 287.0
18 TraesCS4A01G035700 chr4D 86.939 245 5 9 5711 5928 438788288 438788044 3.880000e-62 250.0
19 TraesCS4A01G035700 chr4B 95.117 2744 104 10 2816 5544 542754449 542751721 0.000000e+00 4298.0
20 TraesCS4A01G035700 chr4B 89.844 2314 172 35 2637 4929 541994596 541992325 0.000000e+00 2913.0
21 TraesCS4A01G035700 chr4B 90.450 1466 67 26 426 1852 542756625 542755194 0.000000e+00 1864.0
22 TraesCS4A01G035700 chr4B 91.102 708 31 16 1955 2631 542755196 542754490 0.000000e+00 929.0
23 TraesCS4A01G035700 chr4B 89.960 498 46 4 5963 6459 542750751 542750257 1.970000e-179 640.0
24 TraesCS4A01G035700 chr4B 89.884 346 34 1 4986 5330 541992302 541991957 1.660000e-120 444.0
25 TraesCS4A01G035700 chr4B 92.827 237 17 0 2082 2318 541995062 541994826 1.730000e-90 344.0
26 TraesCS4A01G035700 chr4B 87.973 291 27 3 144 433 542783973 542783690 2.900000e-88 337.0
27 TraesCS4A01G035700 chr4B 77.010 622 81 40 828 1425 541996441 541995858 3.800000e-77 300.0
28 TraesCS4A01G035700 chr4B 95.327 107 5 0 7 113 542784080 542783974 3.110000e-38 171.0
29 TraesCS4A01G035700 chr1A 87.662 770 93 2 2823 3591 401222253 401223021 0.000000e+00 894.0
30 TraesCS4A01G035700 chr1A 86.606 769 103 0 2823 3591 344184158 344184926 0.000000e+00 850.0
31 TraesCS4A01G035700 chr1A 91.901 284 23 0 4156 4439 401223312 401223595 1.310000e-106 398.0
32 TraesCS4A01G035700 chr1A 84.658 365 54 2 4534 4897 391844311 391844674 4.780000e-96 363.0
33 TraesCS4A01G035700 chr1A 89.085 284 31 0 4156 4439 344185217 344185500 2.880000e-93 353.0
34 TraesCS4A01G035700 chr1A 86.972 284 37 0 4156 4439 391762740 391763023 2.920000e-83 320.0
35 TraesCS4A01G035700 chr1D 85.306 769 113 0 2823 3591 271818855 271819623 0.000000e+00 795.0
36 TraesCS4A01G035700 chr1D 85.714 364 52 0 4534 4897 271820245 271820608 1.020000e-102 385.0
37 TraesCS4A01G035700 chr1D 85.205 365 52 2 4534 4897 311687459 311687822 2.210000e-99 374.0
38 TraesCS4A01G035700 chr1D 80.075 532 66 21 5929 6456 122774706 122774211 6.180000e-95 359.0
39 TraesCS4A01G035700 chr1D 88.732 284 32 0 4156 4439 271819964 271820247 1.340000e-91 348.0
40 TraesCS4A01G035700 chr1D 83.836 365 57 2 4534 4897 345377643 345377280 4.810000e-91 346.0
41 TraesCS4A01G035700 chr1D 88.380 284 33 0 4156 4439 311687178 311687461 6.230000e-90 342.0
42 TraesCS4A01G035700 chr1D 88.028 284 34 0 4156 4439 345377924 345377641 2.900000e-88 337.0
43 TraesCS4A01G035700 chr1D 96.581 117 4 0 1848 1964 247521067 247520951 1.840000e-45 195.0
44 TraesCS4A01G035700 chr1B 85.267 767 113 0 2825 3591 421494925 421495691 0.000000e+00 791.0
45 TraesCS4A01G035700 chr1B 83.551 535 74 12 5925 6455 237576513 237575989 7.560000e-134 488.0
46 TraesCS4A01G035700 chr1B 86.264 364 50 0 4534 4897 344371547 344371910 4.710000e-106 396.0
47 TraesCS4A01G035700 chr1B 85.205 365 52 2 4534 4897 421496263 421496626 2.210000e-99 374.0
48 TraesCS4A01G035700 chr1B 84.932 365 53 2 4534 4897 421424303 421424666 1.030000e-97 368.0
49 TraesCS4A01G035700 chr1B 89.085 284 31 0 4156 4439 344371266 344371549 2.880000e-93 353.0
50 TraesCS4A01G035700 chr3A 84.294 503 70 9 5959 6456 34842687 34843185 3.520000e-132 483.0
51 TraesCS4A01G035700 chr3D 84.200 500 70 9 5959 6455 516959229 516959722 1.640000e-130 477.0
52 TraesCS4A01G035700 chr3D 84.375 352 47 7 5959 6306 25754415 25754762 8.050000e-89 339.0
53 TraesCS4A01G035700 chr3D 79.274 468 77 13 6002 6456 161691631 161691171 6.320000e-80 309.0
54 TraesCS4A01G035700 chr3D 78.846 468 85 13 5992 6455 346723241 346723698 2.940000e-78 303.0
55 TraesCS4A01G035700 chr3D 77.830 424 59 13 6029 6449 583046830 583047221 5.060000e-56 230.0
56 TraesCS4A01G035700 chr3D 82.589 224 36 3 5981 6203 508339688 508339467 1.840000e-45 195.0
57 TraesCS4A01G035700 chr2B 83.366 505 71 11 5959 6459 770495444 770494949 7.670000e-124 455.0
58 TraesCS4A01G035700 chr2B 84.181 177 19 7 329 498 153128194 153128020 5.200000e-36 163.0
59 TraesCS4A01G035700 chr2B 85.185 108 14 1 5787 5892 754929995 754930102 6.870000e-20 110.0
60 TraesCS4A01G035700 chr3B 82.966 499 76 8 5959 6455 680337314 680336823 5.970000e-120 442.0
61 TraesCS4A01G035700 chr3B 78.049 205 40 3 5698 5900 642315337 642315136 2.460000e-24 124.0
62 TraesCS4A01G035700 chr3B 77.512 209 32 13 326 524 556519974 556519771 1.910000e-20 111.0
63 TraesCS4A01G035700 chr2D 82.635 501 74 9 5964 6459 627862929 627862437 1.290000e-116 431.0
64 TraesCS4A01G035700 chr2D 82.927 451 69 8 6009 6456 548757165 548757610 3.640000e-107 399.0
65 TraesCS4A01G035700 chr2D 81.865 193 27 6 329 515 101874242 101874052 8.710000e-34 156.0
66 TraesCS4A01G035700 chr2D 84.112 107 15 1 5792 5896 431967281 431967175 1.150000e-17 102.0
67 TraesCS4A01G035700 chr2A 82.164 499 83 5 5964 6459 709864538 709864043 2.160000e-114 424.0
68 TraesCS4A01G035700 chr2A 96.552 116 4 0 1850 1965 662230429 662230314 6.640000e-45 193.0
69 TraesCS4A01G035700 chr2A 90.278 144 11 2 1851 1994 747618216 747618356 1.110000e-42 185.0
70 TraesCS4A01G035700 chr2A 86.420 81 9 1 5792 5870 554522054 554522134 3.220000e-13 87.9
71 TraesCS4A01G035700 chr5D 81.980 505 79 11 5959 6459 482458863 482458367 1.010000e-112 418.0
72 TraesCS4A01G035700 chr5D 81.174 494 83 8 5968 6455 422469463 422468974 7.890000e-104 388.0
73 TraesCS4A01G035700 chr6B 82.056 496 75 9 5964 6456 72400453 72400937 1.680000e-110 411.0
74 TraesCS4A01G035700 chr6B 79.412 204 18 12 5698 5893 219591526 219591713 8.830000e-24 122.0
75 TraesCS4A01G035700 chr6B 91.549 71 4 2 7 76 557070624 557070555 5.350000e-16 97.1
76 TraesCS4A01G035700 chr6B 75.000 220 30 12 5698 5895 67999030 67999246 1.940000e-10 78.7
77 TraesCS4A01G035700 chr6B 84.146 82 9 3 5787 5865 100573490 100573570 6.970000e-10 76.8
78 TraesCS4A01G035700 chr5A 81.590 478 80 7 5981 6455 535907549 535907077 7.890000e-104 388.0
79 TraesCS4A01G035700 chr5A 94.309 123 7 0 1846 1968 581101826 581101704 8.580000e-44 189.0
80 TraesCS4A01G035700 chr5A 94.309 123 6 1 1847 1969 9470797 9470918 3.090000e-43 187.0
81 TraesCS4A01G035700 chr5A 94.030 67 1 3 7 71 556118975 556118910 1.490000e-16 99.0
82 TraesCS4A01G035700 chr7D 81.104 471 85 4 5988 6456 318805463 318805931 2.210000e-99 374.0
83 TraesCS4A01G035700 chr7D 79.070 516 77 16 5966 6456 8484674 8484165 6.270000e-85 326.0
84 TraesCS4A01G035700 chr7D 96.639 119 3 1 1850 1967 610533491 610533373 5.130000e-46 196.0
85 TraesCS4A01G035700 chr7D 82.915 199 25 7 329 520 255420044 255419848 3.110000e-38 171.0
86 TraesCS4A01G035700 chr7D 82.000 200 29 5 329 522 494609999 494609801 5.200000e-36 163.0
87 TraesCS4A01G035700 chr7D 81.313 198 29 6 325 515 230998444 230998640 3.130000e-33 154.0
88 TraesCS4A01G035700 chr7D 91.429 70 4 2 7 75 241858258 241858326 1.920000e-15 95.3
89 TraesCS4A01G035700 chr7D 76.531 196 32 8 329 518 388996175 388995988 1.920000e-15 95.3
90 TraesCS4A01G035700 chr6D 79.175 509 90 14 5959 6459 110756963 110756463 8.050000e-89 339.0
91 TraesCS4A01G035700 chr7A 96.610 118 3 1 1845 1961 269960432 269960315 1.840000e-45 195.0
92 TraesCS4A01G035700 chr7A 92.647 68 4 1 7 74 554662520 554662586 5.350000e-16 97.1
93 TraesCS4A01G035700 chr7A 89.610 77 3 4 7 79 626197182 626197257 6.920000e-15 93.5
94 TraesCS4A01G035700 chr6A 78.974 195 33 4 329 515 19893633 19893439 6.830000e-25 126.0
95 TraesCS4A01G035700 chrUn 92.857 70 3 2 7 76 104999340 104999273 4.140000e-17 100.0
96 TraesCS4A01G035700 chr7B 87.654 81 6 4 7 86 420629753 420629676 2.490000e-14 91.6
97 TraesCS4A01G035700 chr5B 85.714 77 11 0 5820 5896 441388324 441388248 1.500000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G035700 chr4A 28247120 28253604 6484 True 11976.000000 11976 100.000000 1 6485 1 chr4A.!!$R1 6484
1 TraesCS4A01G035700 chr4A 27682113 27686561 4448 True 776.680000 2728 89.108200 828 5330 5 chr4A.!!$R3 4502
2 TraesCS4A01G035700 chr4D 438787607 438799151 11544 True 1487.833333 4484 91.627833 7 6437 6 chr4D.!!$R2 6430
3 TraesCS4A01G035700 chr4D 438256821 438261356 4535 True 1188.000000 2822 84.975000 842 5330 3 chr4D.!!$R1 4488
4 TraesCS4A01G035700 chr4B 542750257 542756625 6368 True 1932.750000 4298 91.657250 426 6459 4 chr4B.!!$R2 6033
5 TraesCS4A01G035700 chr4B 541991957 541996441 4484 True 1000.250000 2913 87.391250 828 5330 4 chr4B.!!$R1 4502
6 TraesCS4A01G035700 chr1A 401222253 401223595 1342 False 646.000000 894 89.781500 2823 4439 2 chr1A.!!$F4 1616
7 TraesCS4A01G035700 chr1A 344184158 344185500 1342 False 601.500000 850 87.845500 2823 4439 2 chr1A.!!$F3 1616
8 TraesCS4A01G035700 chr1D 271818855 271820608 1753 False 509.333333 795 86.584000 2823 4897 3 chr1D.!!$F1 2074
9 TraesCS4A01G035700 chr1D 311687178 311687822 644 False 358.000000 374 86.792500 4156 4897 2 chr1D.!!$F2 741
10 TraesCS4A01G035700 chr1D 345377280 345377924 644 True 341.500000 346 85.932000 4156 4897 2 chr1D.!!$R3 741
11 TraesCS4A01G035700 chr1B 421494925 421496626 1701 False 582.500000 791 85.236000 2825 4897 2 chr1B.!!$F3 2072
12 TraesCS4A01G035700 chr1B 237575989 237576513 524 True 488.000000 488 83.551000 5925 6455 1 chr1B.!!$R1 530
13 TraesCS4A01G035700 chr1B 344371266 344371910 644 False 374.500000 396 87.674500 4156 4897 2 chr1B.!!$F2 741
14 TraesCS4A01G035700 chr7D 8484165 8484674 509 True 326.000000 326 79.070000 5966 6456 1 chr7D.!!$R1 490
15 TraesCS4A01G035700 chr6D 110756463 110756963 500 True 339.000000 339 79.175000 5959 6459 1 chr6D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 444 0.179040 ACAATGGTCGTTCGGTGGTT 60.179 50.0 0.0 0.0 0.00 3.67 F
1305 5210 0.335361 TAGAGCGGAAGAAGTCCCCT 59.665 55.0 0.0 0.0 44.60 4.79 F
2883 7531 0.930726 TTTTCCTTGTGAGGGGTGGT 59.069 50.0 0.0 0.0 43.72 4.16 F
4246 8925 0.253160 TGTTCTATGGCCCTCCTGGT 60.253 55.0 0.0 0.0 36.04 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1928 6022 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.0 0.0 35.93 5.19 R
3027 7675 1.140312 TTTGCTTCCTGACTCCACCT 58.860 50.000 0.0 0.0 0.00 4.00 R
4315 8994 0.393537 ACATGGTAAGCAGCTCAGGC 60.394 55.000 0.0 0.0 39.06 4.85 R
5852 12288 0.599558 CTGCACACATTTGAGGGTGG 59.400 55.000 0.0 0.0 39.31 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 101 6.220930 CCATTCAAGATTTGGATAAGCATGG 58.779 40.000 0.00 0.00 31.94 3.66
155 158 6.349860 GGTGGGTATAGAATGGACAACAAAAC 60.350 42.308 0.00 0.00 0.00 2.43
158 161 6.379988 GGGTATAGAATGGACAACAAAACCAT 59.620 38.462 0.00 0.00 44.87 3.55
217 220 8.909708 TGAACTTTGTGTTAAGTTTGATGAAG 57.090 30.769 0.00 0.00 45.68 3.02
225 228 7.337184 TGTGTTAAGTTTGATGAAGTTGGTGTA 59.663 33.333 0.00 0.00 33.11 2.90
227 230 7.771361 TGTTAAGTTTGATGAAGTTGGTGTAGA 59.229 33.333 0.00 0.00 33.11 2.59
229 232 5.930135 AGTTTGATGAAGTTGGTGTAGACT 58.070 37.500 0.00 0.00 0.00 3.24
235 238 8.918202 TGATGAAGTTGGTGTAGACTTTTTAT 57.082 30.769 0.00 0.00 36.31 1.40
358 370 0.247736 GTCATCGACAAGGTCAGGCT 59.752 55.000 0.00 0.00 32.09 4.58
362 374 2.360475 GACAAGGTCAGGCTGGCC 60.360 66.667 30.60 30.60 44.07 5.36
371 383 3.083349 AGGCTGGCCGCAGTATGA 61.083 61.111 18.87 0.00 39.11 2.15
381 393 1.946650 GCAGTATGAGAGCGGCGAC 60.947 63.158 12.98 3.29 39.69 5.19
403 415 4.796231 ACATGTCGGCGGCTCGTC 62.796 66.667 14.51 0.69 0.00 4.20
432 444 0.179040 ACAATGGTCGTTCGGTGGTT 60.179 50.000 0.00 0.00 0.00 3.67
442 454 2.418197 CGTTCGGTGGTTCATGGACTAT 60.418 50.000 3.62 0.00 0.00 2.12
443 455 3.606687 GTTCGGTGGTTCATGGACTATT 58.393 45.455 3.62 0.00 0.00 1.73
477 489 2.695359 TGAGGTGTTTTGTATCTCCGC 58.305 47.619 0.00 0.00 0.00 5.54
579 593 5.220548 CCAGTTTTACATCATCTCTTGCGAG 60.221 44.000 0.00 0.00 38.67 5.03
617 631 8.522830 CAGATGCCCTAATAAAACTTCTTTTGA 58.477 33.333 0.00 0.00 31.74 2.69
690 722 4.403585 CATCTTGGAGATGCTCTCAAGA 57.596 45.455 20.29 20.29 44.69 3.02
691 723 4.963373 CATCTTGGAGATGCTCTCAAGAT 58.037 43.478 21.85 21.85 46.46 2.40
983 4867 7.742089 CGAAAGAAGCTATAAATAATGGCGAAG 59.258 37.037 0.00 0.00 46.18 3.79
1232 5137 6.410038 CGATTGTTTTGCTGATTTTTCGTTT 58.590 32.000 0.00 0.00 0.00 3.60
1238 5143 7.322222 TGTTTTGCTGATTTTTCGTTTTTGTTG 59.678 29.630 0.00 0.00 0.00 3.33
1240 5145 6.473397 TGCTGATTTTTCGTTTTTGTTGTT 57.527 29.167 0.00 0.00 0.00 2.83
1305 5210 0.335361 TAGAGCGGAAGAAGTCCCCT 59.665 55.000 0.00 0.00 44.60 4.79
1379 5284 1.537889 ACCCCGACACCATGGAGAA 60.538 57.895 21.47 0.00 0.00 2.87
1427 5332 0.997196 CTTCTTAAGGTACGCGCCAC 59.003 55.000 5.73 4.06 0.00 5.01
1460 5375 4.392138 CCTCGGTTGTTTCTAATCACTTCC 59.608 45.833 0.00 0.00 0.00 3.46
1623 5583 9.212593 AGGTTGCTTAATTAATACCAATGGATT 57.787 29.630 6.16 4.28 0.00 3.01
1624 5584 9.830975 GGTTGCTTAATTAATACCAATGGATTT 57.169 29.630 6.16 1.25 0.00 2.17
1673 5633 7.176690 TGGGAGTTAAAAGCTTTCTCCTTTATG 59.823 37.037 30.00 0.00 42.76 1.90
1690 5650 9.482627 CTCCTTTATGCACTAGTATTTCCTAAG 57.517 37.037 0.00 0.00 0.00 2.18
1708 5668 2.010145 AGCACTACAGTACCATTGCG 57.990 50.000 0.00 0.00 35.10 4.85
1846 5930 3.565764 TCTATGATTCTGTGGGGCAAG 57.434 47.619 0.00 0.00 0.00 4.01
1848 5932 3.718434 TCTATGATTCTGTGGGGCAAGAT 59.282 43.478 0.00 0.00 0.00 2.40
1849 5933 2.133281 TGATTCTGTGGGGCAAGATG 57.867 50.000 0.00 0.00 0.00 2.90
1860 5944 1.204146 GGCAAGATGTACTCCCTCCA 58.796 55.000 0.00 0.00 0.00 3.86
1861 5945 1.771255 GGCAAGATGTACTCCCTCCAT 59.229 52.381 0.00 0.00 0.00 3.41
1862 5946 2.173569 GGCAAGATGTACTCCCTCCATT 59.826 50.000 0.00 0.00 0.00 3.16
1863 5947 3.471680 GCAAGATGTACTCCCTCCATTC 58.528 50.000 0.00 0.00 0.00 2.67
1864 5948 3.745797 GCAAGATGTACTCCCTCCATTCC 60.746 52.174 0.00 0.00 0.00 3.01
1868 5952 4.728860 AGATGTACTCCCTCCATTCCAAAT 59.271 41.667 0.00 0.00 0.00 2.32
1873 5957 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
1877 5961 3.555956 CCTCCATTCCAAATTACTCGTCG 59.444 47.826 0.00 0.00 0.00 5.12
1878 5962 2.933906 TCCATTCCAAATTACTCGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
1879 5963 2.675844 CCATTCCAAATTACTCGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
1880 5964 3.242413 CCATTCCAAATTACTCGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
1903 5997 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1922 6016 9.817809 GAACTAAAACACATCTAGATACATCCA 57.182 33.333 4.54 0.00 0.00 3.41
1928 6022 7.473735 ACACATCTAGATACATCCATACCTG 57.526 40.000 4.54 0.00 0.00 4.00
1929 6023 6.071108 ACACATCTAGATACATCCATACCTGC 60.071 42.308 4.54 0.00 0.00 4.85
1930 6024 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
1931 6025 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
1938 6042 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
1942 6046 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
1944 6048 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
2131 6652 1.971481 TTGTGCTTGCAGATGACACT 58.029 45.000 0.00 0.00 32.49 3.55
2302 6823 1.063469 ACTGGAAACTTGTTTGACGCG 59.937 47.619 3.53 3.53 0.00 6.01
2408 6956 7.572523 TTAGCATATCATCTGGGTTTTTCTG 57.427 36.000 0.00 0.00 0.00 3.02
2500 7092 7.663905 CGGATAGTGTTTTTCCCCATGATATAA 59.336 37.037 0.00 0.00 0.00 0.98
2591 7185 2.534757 GACGCTGCTACCGATAAGAAAC 59.465 50.000 0.00 0.00 0.00 2.78
2622 7216 3.118298 GCCTTGCCATATTTTGTTGGGAT 60.118 43.478 0.00 0.00 33.01 3.85
2623 7217 4.444536 CCTTGCCATATTTTGTTGGGATG 58.555 43.478 0.00 0.00 33.01 3.51
2626 7220 5.534207 TGCCATATTTTGTTGGGATGATC 57.466 39.130 0.00 0.00 33.40 2.92
2631 7225 7.201902 GCCATATTTTGTTGGGATGATCTACAA 60.202 37.037 0.00 0.00 33.40 2.41
2633 7227 9.903682 CATATTTTGTTGGGATGATCTACAATC 57.096 33.333 6.43 0.00 0.00 2.67
2634 7228 9.872684 ATATTTTGTTGGGATGATCTACAATCT 57.127 29.630 6.43 2.99 0.00 2.40
2635 7229 7.395190 TTTTGTTGGGATGATCTACAATCTG 57.605 36.000 6.43 0.00 0.00 2.90
2692 7315 7.470935 TTCACTGTACCTTATGCTACACTTA 57.529 36.000 0.00 0.00 0.00 2.24
2693 7316 7.470935 TCACTGTACCTTATGCTACACTTAA 57.529 36.000 0.00 0.00 0.00 1.85
2694 7317 7.898918 TCACTGTACCTTATGCTACACTTAAA 58.101 34.615 0.00 0.00 0.00 1.52
2695 7318 7.816031 TCACTGTACCTTATGCTACACTTAAAC 59.184 37.037 0.00 0.00 0.00 2.01
2696 7319 7.817962 CACTGTACCTTATGCTACACTTAAACT 59.182 37.037 0.00 0.00 0.00 2.66
2698 7321 9.517609 CTGTACCTTATGCTACACTTAAACTAG 57.482 37.037 0.00 0.00 0.00 2.57
2699 7322 9.246670 TGTACCTTATGCTACACTTAAACTAGA 57.753 33.333 0.00 0.00 0.00 2.43
2746 7393 6.573664 TTGTTTTGTTGGGATGATCTACTG 57.426 37.500 0.00 0.00 0.00 2.74
2747 7394 5.630121 TGTTTTGTTGGGATGATCTACTGT 58.370 37.500 0.00 0.00 0.00 3.55
2748 7395 5.705441 TGTTTTGTTGGGATGATCTACTGTC 59.295 40.000 0.00 0.00 0.00 3.51
2749 7396 5.762179 TTTGTTGGGATGATCTACTGTCT 57.238 39.130 0.00 0.00 0.00 3.41
2750 7397 6.867519 TTTGTTGGGATGATCTACTGTCTA 57.132 37.500 0.00 0.00 0.00 2.59
2751 7398 5.854010 TGTTGGGATGATCTACTGTCTAC 57.146 43.478 0.00 0.00 0.00 2.59
2752 7399 5.269189 TGTTGGGATGATCTACTGTCTACA 58.731 41.667 0.00 0.00 0.00 2.74
2753 7400 5.719563 TGTTGGGATGATCTACTGTCTACAA 59.280 40.000 0.00 0.00 0.00 2.41
2754 7401 6.384015 TGTTGGGATGATCTACTGTCTACAAT 59.616 38.462 0.00 0.00 0.00 2.71
2755 7402 6.656632 TGGGATGATCTACTGTCTACAATC 57.343 41.667 0.00 0.00 0.00 2.67
2756 7403 6.377080 TGGGATGATCTACTGTCTACAATCT 58.623 40.000 0.00 0.00 0.00 2.40
2757 7404 6.266330 TGGGATGATCTACTGTCTACAATCTG 59.734 42.308 0.00 0.00 0.00 2.90
2758 7405 6.155827 GGATGATCTACTGTCTACAATCTGC 58.844 44.000 0.00 0.00 0.00 4.26
2759 7406 6.015519 GGATGATCTACTGTCTACAATCTGCT 60.016 42.308 0.00 0.00 0.00 4.24
2760 7407 7.175816 GGATGATCTACTGTCTACAATCTGCTA 59.824 40.741 0.00 0.00 0.00 3.49
2761 7408 8.648698 ATGATCTACTGTCTACAATCTGCTAT 57.351 34.615 0.00 0.00 0.00 2.97
2762 7409 8.105097 TGATCTACTGTCTACAATCTGCTATC 57.895 38.462 0.00 0.00 0.00 2.08
2763 7410 6.885952 TCTACTGTCTACAATCTGCTATCC 57.114 41.667 0.00 0.00 0.00 2.59
2764 7411 6.606069 TCTACTGTCTACAATCTGCTATCCT 58.394 40.000 0.00 0.00 0.00 3.24
2765 7412 7.063593 TCTACTGTCTACAATCTGCTATCCTT 58.936 38.462 0.00 0.00 0.00 3.36
2766 7413 8.218488 TCTACTGTCTACAATCTGCTATCCTTA 58.782 37.037 0.00 0.00 0.00 2.69
2767 7414 7.045126 ACTGTCTACAATCTGCTATCCTTAC 57.955 40.000 0.00 0.00 0.00 2.34
2768 7415 6.836527 ACTGTCTACAATCTGCTATCCTTACT 59.163 38.462 0.00 0.00 0.00 2.24
2769 7416 7.343316 ACTGTCTACAATCTGCTATCCTTACTT 59.657 37.037 0.00 0.00 0.00 2.24
2770 7417 7.717568 TGTCTACAATCTGCTATCCTTACTTC 58.282 38.462 0.00 0.00 0.00 3.01
2883 7531 0.930726 TTTTCCTTGTGAGGGGTGGT 59.069 50.000 0.00 0.00 43.72 4.16
2910 7558 5.941788 AGAAGTGTGGAGTTCAAGGTTATT 58.058 37.500 0.00 0.00 34.36 1.40
3006 7654 2.328319 GAGGATGAGGAGAGGCTTGAT 58.672 52.381 0.00 0.00 0.00 2.57
3027 7675 4.664150 TGATGTTGGCTACGATGATGTA 57.336 40.909 0.00 0.00 0.00 2.29
3159 7807 3.721706 GGACCACCTGGCTCTGGG 61.722 72.222 6.76 0.00 39.32 4.45
3201 7849 3.499737 GCCAATGAGACGGGTGCG 61.500 66.667 0.00 0.00 0.00 5.34
3634 8289 5.595542 TCCTTGAATGCAATATCTTTCTGGG 59.404 40.000 0.00 0.00 32.68 4.45
4246 8925 0.253160 TGTTCTATGGCCCTCCTGGT 60.253 55.000 0.00 0.00 36.04 4.00
4315 8994 5.059833 GCTAACTTCATCAGTATCAAGGGG 58.940 45.833 0.00 0.00 32.94 4.79
4369 9048 0.541392 AGGCCAATGTGCGTGAGATA 59.459 50.000 5.01 0.00 0.00 1.98
4463 9142 4.081476 TCAGTCAGTCTCTCTCTCTCTCTG 60.081 50.000 0.00 0.00 0.00 3.35
4465 9144 3.935203 GTCAGTCTCTCTCTCTCTCTGTG 59.065 52.174 0.00 0.00 0.00 3.66
4467 9146 3.686241 CAGTCTCTCTCTCTCTCTGTGTG 59.314 52.174 0.00 0.00 0.00 3.82
4471 9150 3.145286 TCTCTCTCTCTCTGTGTGTGTG 58.855 50.000 0.00 0.00 0.00 3.82
4473 9152 2.620585 TCTCTCTCTCTGTGTGTGTGTG 59.379 50.000 0.00 0.00 0.00 3.82
4709 9406 2.171448 AGGGCGTCTTGATCAGCTTATT 59.829 45.455 4.84 0.00 0.00 1.40
4736 9433 2.095461 CCTCTTCCTGATGTCGAGTCA 58.905 52.381 0.00 0.00 0.00 3.41
4913 9614 8.302515 TCGAGAAGGTACCAGTAATTTCTATT 57.697 34.615 15.94 0.00 0.00 1.73
4961 9662 7.171337 GCAAATCAATCCTTTTGAAGCACTTAA 59.829 33.333 0.00 0.00 35.34 1.85
5011 9724 7.504926 TTATACCTGTGGTCTAATGGAACTT 57.495 36.000 0.00 0.00 37.09 2.66
5036 9749 0.558220 TCCAGGACATCGAGAGGGAT 59.442 55.000 0.00 0.00 0.00 3.85
5078 9791 0.692419 AAGCCATGGAGGAGGACGAT 60.692 55.000 18.40 0.00 41.22 3.73
5225 9938 3.296709 ATTCGGCAGCGAGTTCCGT 62.297 57.895 0.00 0.00 43.35 4.69
5436 10161 1.004277 TCTGCCCGTTATTTCCAGCTT 59.996 47.619 0.00 0.00 0.00 3.74
5437 10162 1.818674 CTGCCCGTTATTTCCAGCTTT 59.181 47.619 0.00 0.00 0.00 3.51
5550 10275 1.064654 GGACGCCTCTTTTGATCATGC 59.935 52.381 0.00 0.00 0.00 4.06
5563 10288 3.807553 TGATCATGCGCCTCTTGATTTA 58.192 40.909 4.18 0.03 39.01 1.40
5565 10290 5.550290 TGATCATGCGCCTCTTGATTTATA 58.450 37.500 4.18 0.00 39.01 0.98
5566 10291 5.409520 TGATCATGCGCCTCTTGATTTATAC 59.590 40.000 4.18 0.00 39.01 1.47
5567 10292 4.960938 TCATGCGCCTCTTGATTTATACT 58.039 39.130 4.18 0.00 0.00 2.12
5568 10293 4.991056 TCATGCGCCTCTTGATTTATACTC 59.009 41.667 4.18 0.00 0.00 2.59
5569 10294 4.672587 TGCGCCTCTTGATTTATACTCT 57.327 40.909 4.18 0.00 0.00 3.24
5572 10297 4.683781 GCGCCTCTTGATTTATACTCTCTG 59.316 45.833 0.00 0.00 0.00 3.35
5573 10298 4.683781 CGCCTCTTGATTTATACTCTCTGC 59.316 45.833 0.00 0.00 0.00 4.26
5574 10299 5.605534 GCCTCTTGATTTATACTCTCTGCA 58.394 41.667 0.00 0.00 0.00 4.41
5575 10300 5.695816 GCCTCTTGATTTATACTCTCTGCAG 59.304 44.000 7.63 7.63 0.00 4.41
5577 10302 7.470702 GCCTCTTGATTTATACTCTCTGCAGTA 60.471 40.741 14.67 0.00 33.32 2.74
5578 10303 8.081633 CCTCTTGATTTATACTCTCTGCAGTAG 58.918 40.741 14.67 14.66 32.28 2.57
5580 10305 9.190317 TCTTGATTTATACTCTCTGCAGTAGAA 57.810 33.333 20.74 6.37 34.32 2.10
5581 10306 9.979578 CTTGATTTATACTCTCTGCAGTAGAAT 57.020 33.333 20.74 12.24 31.72 2.40
5605 11681 8.603242 ATTATTTGTCGACATATAGGTTGTCC 57.397 34.615 20.80 0.00 40.29 4.02
5606 11682 3.703286 TGTCGACATATAGGTTGTCCG 57.297 47.619 15.76 0.00 40.29 4.79
5607 11683 2.359848 TGTCGACATATAGGTTGTCCGG 59.640 50.000 15.76 0.00 40.29 5.14
5610 11686 3.448301 TCGACATATAGGTTGTCCGGTTT 59.552 43.478 0.00 0.00 40.29 3.27
5612 11688 4.510571 GACATATAGGTTGTCCGGTTTGT 58.489 43.478 0.00 0.00 38.00 2.83
5636 11791 4.245845 GGTTTTCCGGTTTTGCATTCTA 57.754 40.909 0.00 0.00 0.00 2.10
5637 11792 4.816392 GGTTTTCCGGTTTTGCATTCTAT 58.184 39.130 0.00 0.00 0.00 1.98
5661 11816 0.250640 CCAAGCTCTCAGCCACAACT 60.251 55.000 0.00 0.00 43.77 3.16
5662 11817 1.002430 CCAAGCTCTCAGCCACAACTA 59.998 52.381 0.00 0.00 43.77 2.24
5663 11818 2.072298 CAAGCTCTCAGCCACAACTAC 58.928 52.381 0.00 0.00 43.77 2.73
5664 11819 1.638529 AGCTCTCAGCCACAACTACT 58.361 50.000 0.00 0.00 43.77 2.57
5673 11844 0.884704 CCACAACTACTTGCTGGCGT 60.885 55.000 0.00 0.00 0.00 5.68
5695 11897 0.311165 CGACATATCCGGCTCGTCTT 59.689 55.000 0.00 0.00 0.00 3.01
5760 12182 1.220206 CACTCGCTGGAGGAATGCT 59.780 57.895 0.00 0.00 44.93 3.79
5854 12290 3.904800 TTCGCATTGGAGAAGATACCA 57.095 42.857 0.00 0.00 0.00 3.25
5855 12291 3.179443 TCGCATTGGAGAAGATACCAC 57.821 47.619 0.00 0.00 35.81 4.16
5856 12292 2.158957 TCGCATTGGAGAAGATACCACC 60.159 50.000 0.00 0.00 35.81 4.61
5857 12293 2.576615 GCATTGGAGAAGATACCACCC 58.423 52.381 0.00 0.00 35.81 4.61
5858 12294 2.173569 GCATTGGAGAAGATACCACCCT 59.826 50.000 0.00 0.00 35.81 4.34
5859 12295 3.745797 GCATTGGAGAAGATACCACCCTC 60.746 52.174 0.00 0.00 35.81 4.30
5860 12296 2.940514 TGGAGAAGATACCACCCTCA 57.059 50.000 0.00 0.00 0.00 3.86
5861 12297 3.199442 TGGAGAAGATACCACCCTCAA 57.801 47.619 0.00 0.00 0.00 3.02
5862 12298 3.526899 TGGAGAAGATACCACCCTCAAA 58.473 45.455 0.00 0.00 0.00 2.69
5863 12299 4.111577 TGGAGAAGATACCACCCTCAAAT 58.888 43.478 0.00 0.00 0.00 2.32
5864 12300 4.080356 TGGAGAAGATACCACCCTCAAATG 60.080 45.833 0.00 0.00 0.00 2.32
5865 12301 4.080299 GGAGAAGATACCACCCTCAAATGT 60.080 45.833 0.00 0.00 0.00 2.71
5866 12302 4.848357 AGAAGATACCACCCTCAAATGTG 58.152 43.478 0.00 0.00 0.00 3.21
5867 12303 4.289672 AGAAGATACCACCCTCAAATGTGT 59.710 41.667 0.00 0.00 0.00 3.72
5868 12304 3.955471 AGATACCACCCTCAAATGTGTG 58.045 45.455 0.00 0.00 0.00 3.82
5869 12305 1.904287 TACCACCCTCAAATGTGTGC 58.096 50.000 0.00 0.00 0.00 4.57
5870 12306 0.106268 ACCACCCTCAAATGTGTGCA 60.106 50.000 0.00 0.00 0.00 4.57
5871 12307 0.599558 CCACCCTCAAATGTGTGCAG 59.400 55.000 0.00 0.00 0.00 4.41
5872 12308 1.608055 CACCCTCAAATGTGTGCAGA 58.392 50.000 0.00 0.00 0.00 4.26
5873 12309 2.165167 CACCCTCAAATGTGTGCAGAT 58.835 47.619 0.00 0.00 0.00 2.90
5874 12310 2.094906 CACCCTCAAATGTGTGCAGATG 60.095 50.000 0.00 0.00 0.00 2.90
5875 12311 2.165167 CCCTCAAATGTGTGCAGATGT 58.835 47.619 0.00 0.00 0.00 3.06
5876 12312 2.559668 CCCTCAAATGTGTGCAGATGTT 59.440 45.455 0.00 0.00 0.00 2.71
5877 12313 3.006110 CCCTCAAATGTGTGCAGATGTTT 59.994 43.478 0.00 0.00 0.00 2.83
5878 12314 3.985279 CCTCAAATGTGTGCAGATGTTTG 59.015 43.478 14.03 14.03 0.00 2.93
5879 12315 3.979948 TCAAATGTGTGCAGATGTTTGG 58.020 40.909 17.71 5.93 0.00 3.28
5880 12316 3.061322 CAAATGTGTGCAGATGTTTGGG 58.939 45.455 12.96 0.00 0.00 4.12
5881 12317 2.291209 ATGTGTGCAGATGTTTGGGA 57.709 45.000 0.00 0.00 0.00 4.37
5882 12318 2.064434 TGTGTGCAGATGTTTGGGAA 57.936 45.000 0.00 0.00 0.00 3.97
5883 12319 1.955778 TGTGTGCAGATGTTTGGGAAG 59.044 47.619 0.00 0.00 0.00 3.46
5884 12320 2.229792 GTGTGCAGATGTTTGGGAAGA 58.770 47.619 0.00 0.00 0.00 2.87
5885 12321 2.821969 GTGTGCAGATGTTTGGGAAGAT 59.178 45.455 0.00 0.00 0.00 2.40
5886 12322 4.009675 GTGTGCAGATGTTTGGGAAGATA 58.990 43.478 0.00 0.00 0.00 1.98
5887 12323 4.641989 GTGTGCAGATGTTTGGGAAGATAT 59.358 41.667 0.00 0.00 0.00 1.63
5888 12324 5.126061 GTGTGCAGATGTTTGGGAAGATATT 59.874 40.000 0.00 0.00 0.00 1.28
5889 12325 5.125900 TGTGCAGATGTTTGGGAAGATATTG 59.874 40.000 0.00 0.00 0.00 1.90
5890 12326 5.357878 GTGCAGATGTTTGGGAAGATATTGA 59.642 40.000 0.00 0.00 0.00 2.57
5891 12327 6.040166 GTGCAGATGTTTGGGAAGATATTGAT 59.960 38.462 0.00 0.00 0.00 2.57
5892 12328 6.263842 TGCAGATGTTTGGGAAGATATTGATC 59.736 38.462 0.00 0.00 0.00 2.92
5893 12329 6.294397 GCAGATGTTTGGGAAGATATTGATCC 60.294 42.308 0.00 0.00 31.81 3.36
5894 12330 6.000219 AGATGTTTGGGAAGATATTGATCCG 59.000 40.000 0.00 0.00 33.90 4.18
5895 12331 4.460263 TGTTTGGGAAGATATTGATCCGG 58.540 43.478 0.00 0.00 33.90 5.14
5896 12332 4.165180 TGTTTGGGAAGATATTGATCCGGA 59.835 41.667 6.61 6.61 33.90 5.14
5897 12333 4.623932 TTGGGAAGATATTGATCCGGAG 57.376 45.455 11.34 0.00 33.90 4.63
5898 12334 3.587498 TGGGAAGATATTGATCCGGAGT 58.413 45.455 11.34 0.00 33.90 3.85
5899 12335 4.747583 TGGGAAGATATTGATCCGGAGTA 58.252 43.478 11.34 0.00 33.90 2.59
5900 12336 5.152193 TGGGAAGATATTGATCCGGAGTAA 58.848 41.667 11.34 8.04 33.90 2.24
5901 12337 5.011738 TGGGAAGATATTGATCCGGAGTAAC 59.988 44.000 11.34 1.90 33.90 2.50
5902 12338 5.246429 GGGAAGATATTGATCCGGAGTAACT 59.754 44.000 11.34 1.84 33.90 2.24
5903 12339 6.239629 GGGAAGATATTGATCCGGAGTAACTT 60.240 42.308 11.34 10.19 33.90 2.66
5904 12340 6.869388 GGAAGATATTGATCCGGAGTAACTTC 59.131 42.308 11.34 17.04 31.81 3.01
5905 12341 6.978674 AGATATTGATCCGGAGTAACTTCA 57.021 37.500 11.34 4.43 31.81 3.02
5906 12342 7.361457 AGATATTGATCCGGAGTAACTTCAA 57.639 36.000 16.10 16.10 31.81 2.69
5907 12343 7.437748 AGATATTGATCCGGAGTAACTTCAAG 58.562 38.462 18.06 0.00 31.81 3.02
5908 12344 3.887621 TGATCCGGAGTAACTTCAAGG 57.112 47.619 11.34 0.00 0.00 3.61
5909 12345 3.170717 TGATCCGGAGTAACTTCAAGGT 58.829 45.455 11.34 0.00 0.00 3.50
5910 12346 3.194968 TGATCCGGAGTAACTTCAAGGTC 59.805 47.826 11.34 0.00 0.00 3.85
5911 12347 1.897802 TCCGGAGTAACTTCAAGGTCC 59.102 52.381 0.00 0.00 0.00 4.46
5912 12348 1.621814 CCGGAGTAACTTCAAGGTCCA 59.378 52.381 0.00 0.00 0.00 4.02
5913 12349 2.038033 CCGGAGTAACTTCAAGGTCCAA 59.962 50.000 0.00 0.00 0.00 3.53
5914 12350 3.495453 CCGGAGTAACTTCAAGGTCCAAA 60.495 47.826 0.00 0.00 0.00 3.28
5915 12351 4.324267 CGGAGTAACTTCAAGGTCCAAAT 58.676 43.478 0.00 0.00 0.00 2.32
5916 12352 5.484715 CGGAGTAACTTCAAGGTCCAAATA 58.515 41.667 0.00 0.00 0.00 1.40
5917 12353 5.935789 CGGAGTAACTTCAAGGTCCAAATAA 59.064 40.000 0.00 0.00 0.00 1.40
5918 12354 6.092259 CGGAGTAACTTCAAGGTCCAAATAAG 59.908 42.308 0.00 0.00 0.00 1.73
5919 12355 6.374613 GGAGTAACTTCAAGGTCCAAATAAGG 59.625 42.308 0.00 0.00 0.00 2.69
5920 12356 7.086685 AGTAACTTCAAGGTCCAAATAAGGA 57.913 36.000 0.00 0.00 34.64 3.36
5921 12357 7.168905 AGTAACTTCAAGGTCCAAATAAGGAG 58.831 38.462 0.00 0.00 38.64 3.69
5922 12358 4.923415 ACTTCAAGGTCCAAATAAGGAGG 58.077 43.478 0.00 0.00 38.64 4.30
5923 12359 4.263949 ACTTCAAGGTCCAAATAAGGAGGG 60.264 45.833 0.00 0.00 38.64 4.30
5956 12392 2.821969 GTGTGCAGATGTTTGGGAAGAT 59.178 45.455 0.00 0.00 0.00 2.40
6039 12488 1.379576 AAGCAAGAGGATGGCCAGC 60.380 57.895 14.08 14.08 36.29 4.85
6069 12518 3.130869 GGAAGTGTGGATTGCATGCATTA 59.869 43.478 23.37 8.08 31.75 1.90
6085 12534 3.274288 GCATTAGAGGTGGAAGAACTGG 58.726 50.000 0.00 0.00 0.00 4.00
6231 12681 2.647529 ATCACTGTGTTGCGTCGATA 57.352 45.000 7.79 0.00 0.00 2.92
6264 12714 4.810191 CTCAGGTAGCTAGTGGAAAAGT 57.190 45.455 0.00 0.00 0.00 2.66
6316 12789 8.557450 GGACATGATTATACCAGGGGTATTATT 58.443 37.037 12.75 0.00 45.54 1.40
6377 12850 4.360951 AGACCATAAGTGACCCGAAAAA 57.639 40.909 0.00 0.00 0.00 1.94
6378 12851 4.918588 AGACCATAAGTGACCCGAAAAAT 58.081 39.130 0.00 0.00 0.00 1.82
6388 12861 3.826157 TGACCCGAAAAATCAAGAAGCAT 59.174 39.130 0.00 0.00 0.00 3.79
6390 12863 5.652014 TGACCCGAAAAATCAAGAAGCATAT 59.348 36.000 0.00 0.00 0.00 1.78
6416 12890 2.202395 GCCCAAGCACAAGGAGCAA 61.202 57.895 0.00 0.00 39.53 3.91
6420 12894 1.905354 AAGCACAAGGAGCAAGCCC 60.905 57.895 0.00 0.00 0.00 5.19
6424 12898 0.971386 CACAAGGAGCAAGCCCAAAT 59.029 50.000 0.00 0.00 0.00 2.32
6456 12930 2.364002 GGGTATTTGGTGTGTTGCAAGT 59.636 45.455 0.00 0.00 0.00 3.16
6459 12933 4.202111 GGTATTTGGTGTGTTGCAAGTTCT 60.202 41.667 0.00 0.00 0.00 3.01
6460 12934 2.937469 TTGGTGTGTTGCAAGTTCTG 57.063 45.000 0.00 0.00 0.00 3.02
6474 12948 5.375417 CAAGTTCTGCATGTGTAATTCCA 57.625 39.130 0.00 0.00 0.00 3.53
6475 12949 5.396484 CAAGTTCTGCATGTGTAATTCCAG 58.604 41.667 0.00 0.00 0.00 3.86
6476 12950 4.910195 AGTTCTGCATGTGTAATTCCAGA 58.090 39.130 0.00 0.00 0.00 3.86
6477 12951 4.697352 AGTTCTGCATGTGTAATTCCAGAC 59.303 41.667 0.00 0.00 0.00 3.51
6478 12952 4.284829 TCTGCATGTGTAATTCCAGACA 57.715 40.909 0.00 0.00 0.00 3.41
6479 12953 4.650734 TCTGCATGTGTAATTCCAGACAA 58.349 39.130 0.00 0.00 0.00 3.18
6480 12954 4.455533 TCTGCATGTGTAATTCCAGACAAC 59.544 41.667 0.00 0.00 0.00 3.32
6481 12955 4.140536 TGCATGTGTAATTCCAGACAACA 58.859 39.130 0.00 0.00 0.00 3.33
6482 12956 4.766373 TGCATGTGTAATTCCAGACAACAT 59.234 37.500 0.00 0.00 0.00 2.71
6483 12957 5.097529 GCATGTGTAATTCCAGACAACATG 58.902 41.667 8.19 8.19 37.71 3.21
6484 12958 5.106197 GCATGTGTAATTCCAGACAACATGA 60.106 40.000 15.06 0.00 37.32 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 3.709653 GTCCATTCTATACCCACCACTCA 59.290 47.826 0.00 0.00 0.00 3.41
170 173 5.874261 TCATCACACGTGACATGAAACATAT 59.126 36.000 25.01 0.00 43.11 1.78
276 279 8.954350 ACATTTGAAATGAATCCAAAACACAAA 58.046 25.926 23.37 0.00 34.08 2.83
320 332 1.067060 ACAGCCGGAAAGTTTTTCAGC 59.933 47.619 5.05 5.96 0.00 4.26
333 345 1.811266 CCTTGTCGATGACAGCCGG 60.811 63.158 0.00 0.00 43.69 6.13
358 370 2.501128 GCTCTCATACTGCGGCCA 59.499 61.111 2.24 0.00 0.00 5.36
363 375 1.946650 GTCGCCGCTCTCATACTGC 60.947 63.158 0.00 0.00 0.00 4.40
365 377 1.730487 CTGTCGCCGCTCTCATACT 59.270 57.895 0.00 0.00 0.00 2.12
386 398 4.796231 GACGAGCCGCCGACATGT 62.796 66.667 0.00 0.00 0.00 3.21
403 415 2.990967 ACCATTGTTGCCGCCAGG 60.991 61.111 0.00 0.00 41.62 4.45
405 417 3.361158 CGACCATTGTTGCCGCCA 61.361 61.111 0.00 0.00 0.00 5.69
408 420 1.154488 CGAACGACCATTGTTGCCG 60.154 57.895 0.00 0.00 0.00 5.69
411 423 0.237235 CCACCGAACGACCATTGTTG 59.763 55.000 0.00 0.00 0.00 3.33
412 424 0.179040 ACCACCGAACGACCATTGTT 60.179 50.000 0.00 0.00 0.00 2.83
413 425 0.179040 AACCACCGAACGACCATTGT 60.179 50.000 0.00 0.00 0.00 2.71
498 510 8.887036 AGTTTCTTATTTTTGCGAAAAGGATT 57.113 26.923 16.68 3.48 38.09 3.01
515 528 8.124199 GTCGTTTGGTGTATTTGAAGTTTCTTA 58.876 33.333 0.00 0.00 0.00 2.10
516 529 6.970613 GTCGTTTGGTGTATTTGAAGTTTCTT 59.029 34.615 0.00 0.00 0.00 2.52
518 531 6.259638 TGTCGTTTGGTGTATTTGAAGTTTC 58.740 36.000 0.00 0.00 0.00 2.78
519 532 6.127842 ACTGTCGTTTGGTGTATTTGAAGTTT 60.128 34.615 0.00 0.00 0.00 2.66
520 533 5.355910 ACTGTCGTTTGGTGTATTTGAAGTT 59.644 36.000 0.00 0.00 0.00 2.66
548 561 4.697352 AGATGATGTAAAACTGGTGCTCAC 59.303 41.667 0.00 0.00 0.00 3.51
586 600 9.259832 AGAAGTTTTATTAGGGCATCTGAAATT 57.740 29.630 0.00 0.00 0.00 1.82
646 678 7.867305 TGATGTATAATAACTCCCGCAAAAA 57.133 32.000 0.00 0.00 0.00 1.94
688 720 4.710324 TCGGTTGACAAGTTTGGTAATCT 58.290 39.130 0.00 0.00 0.00 2.40
690 722 4.710324 TCTCGGTTGACAAGTTTGGTAAT 58.290 39.130 0.00 0.00 0.00 1.89
691 723 4.139859 TCTCGGTTGACAAGTTTGGTAA 57.860 40.909 0.00 0.00 0.00 2.85
836 4720 4.767255 CCTGGCGGGCTCTGTGAC 62.767 72.222 0.00 0.00 0.00 3.67
983 4867 0.963225 GGCGAGAGAGAGGGGATTAC 59.037 60.000 0.00 0.00 0.00 1.89
1232 5137 3.541713 GGCCGCCCCAACAACAAA 61.542 61.111 0.00 0.00 0.00 2.83
1427 5332 3.411517 AACCGAGGCCCTGGGATG 61.412 66.667 19.87 1.68 33.49 3.51
1673 5633 6.570692 TGTAGTGCTTAGGAAATACTAGTGC 58.429 40.000 5.39 0.00 0.00 4.40
1690 5650 1.393539 CACGCAATGGTACTGTAGTGC 59.606 52.381 7.38 7.38 0.00 4.40
1818 5778 6.000219 CCCCACAGAATCATAGAAGGTTATG 59.000 44.000 0.00 0.00 33.30 1.90
1846 5930 4.503714 TTTGGAATGGAGGGAGTACATC 57.496 45.455 0.00 0.00 0.00 3.06
1848 5932 4.946160 AATTTGGAATGGAGGGAGTACA 57.054 40.909 0.00 0.00 0.00 2.90
1849 5933 6.002653 AGTAATTTGGAATGGAGGGAGTAC 57.997 41.667 0.00 0.00 0.00 2.73
1860 5944 3.857052 TCTGCGACGAGTAATTTGGAAT 58.143 40.909 0.00 0.00 0.00 3.01
1861 5945 3.306917 TCTGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
1862 5946 3.306917 TTCTGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
1863 5947 4.334443 CATTTCTGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
1864 5948 4.092821 TCCATTTCTGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
1868 5952 3.186909 CATCCATTTCTGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
1873 5957 3.384668 AGATACATCCATTTCTGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
1877 5961 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
1903 5997 7.526192 GCAGGTATGGATGTATCTAGATGTGTT 60.526 40.741 15.79 0.00 0.00 3.32
1905 5999 6.336566 GCAGGTATGGATGTATCTAGATGTG 58.663 44.000 15.79 0.00 0.00 3.21
1921 6015 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
1922 6016 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
1923 6017 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
1924 6018 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
1925 6019 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
1926 6020 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
1928 6022 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
1929 6023 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
1930 6024 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1931 6025 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1938 6042 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
1942 6046 1.413077 CCAATCTACTCCCTCCGTTCC 59.587 57.143 0.00 0.00 0.00 3.62
1944 6048 2.500504 GTTCCAATCTACTCCCTCCGTT 59.499 50.000 0.00 0.00 0.00 4.44
2041 6562 2.573009 TGTCAGGAGGCATGAATGAAGA 59.427 45.455 0.00 0.00 0.00 2.87
2131 6652 2.639347 TCTGATCTTTGGCTCCTCACAA 59.361 45.455 0.00 0.00 0.00 3.33
2302 6823 9.319223 GATAAAGAAATCTCACGTTTCAAGAAC 57.681 33.333 0.22 0.00 37.89 3.01
2500 7092 8.090788 AGATAGTTCAGGGTACACACAAATAT 57.909 34.615 0.00 0.00 0.00 1.28
2510 7102 8.738645 ATTTCAATGAAGATAGTTCAGGGTAC 57.261 34.615 0.00 0.00 0.00 3.34
2579 7173 4.157840 GGCATTTCAAGGTTTCTTATCGGT 59.842 41.667 0.00 0.00 0.00 4.69
2581 7175 5.567138 AGGCATTTCAAGGTTTCTTATCG 57.433 39.130 0.00 0.00 0.00 2.92
2591 7185 4.411256 AATATGGCAAGGCATTTCAAGG 57.589 40.909 14.49 0.00 0.00 3.61
2622 7216 5.835280 TCAGTGGATAGCAGATTGTAGATCA 59.165 40.000 0.00 0.00 0.00 2.92
2623 7217 6.338214 TCAGTGGATAGCAGATTGTAGATC 57.662 41.667 0.00 0.00 0.00 2.75
2626 7220 5.911752 AGTTCAGTGGATAGCAGATTGTAG 58.088 41.667 0.00 0.00 0.00 2.74
2631 7225 8.427902 TGATAATAGTTCAGTGGATAGCAGAT 57.572 34.615 0.00 0.00 0.00 2.90
2633 7227 8.309656 TCATGATAATAGTTCAGTGGATAGCAG 58.690 37.037 0.00 0.00 0.00 4.24
2634 7228 8.193953 TCATGATAATAGTTCAGTGGATAGCA 57.806 34.615 0.00 0.00 0.00 3.49
2695 7318 9.553064 GGCATACCATGGATTCTTATATTCTAG 57.447 37.037 21.47 0.00 35.26 2.43
2696 7319 9.284131 AGGCATACCATGGATTCTTATATTCTA 57.716 33.333 21.47 0.00 39.06 2.10
2698 7321 8.814038 AAGGCATACCATGGATTCTTATATTC 57.186 34.615 21.47 0.00 39.06 1.75
2699 7322 9.028284 CAAAGGCATACCATGGATTCTTATATT 57.972 33.333 21.47 0.00 39.06 1.28
2700 7323 8.172741 ACAAAGGCATACCATGGATTCTTATAT 58.827 33.333 21.47 0.25 39.06 0.86
2712 7336 4.504689 CCCAACAAAACAAAGGCATACCAT 60.505 41.667 0.00 0.00 39.06 3.55
2746 7393 6.858993 CGAAGTAAGGATAGCAGATTGTAGAC 59.141 42.308 0.00 0.00 0.00 2.59
2747 7394 6.546403 ACGAAGTAAGGATAGCAGATTGTAGA 59.454 38.462 0.00 0.00 41.94 2.59
2748 7395 6.740110 ACGAAGTAAGGATAGCAGATTGTAG 58.260 40.000 0.00 0.00 41.94 2.74
2749 7396 6.710597 ACGAAGTAAGGATAGCAGATTGTA 57.289 37.500 0.00 0.00 41.94 2.41
2750 7397 5.599999 ACGAAGTAAGGATAGCAGATTGT 57.400 39.130 0.00 0.00 41.94 2.71
2751 7398 5.277058 GCAACGAAGTAAGGATAGCAGATTG 60.277 44.000 0.00 0.00 45.00 2.67
2752 7399 4.811557 GCAACGAAGTAAGGATAGCAGATT 59.188 41.667 0.00 0.00 45.00 2.40
2753 7400 4.141937 TGCAACGAAGTAAGGATAGCAGAT 60.142 41.667 0.00 0.00 45.00 2.90
2754 7401 3.194755 TGCAACGAAGTAAGGATAGCAGA 59.805 43.478 0.00 0.00 45.00 4.26
2755 7402 3.521560 TGCAACGAAGTAAGGATAGCAG 58.478 45.455 0.00 0.00 45.00 4.24
2756 7403 3.603158 TGCAACGAAGTAAGGATAGCA 57.397 42.857 0.00 0.00 45.00 3.49
2757 7404 3.495001 GGATGCAACGAAGTAAGGATAGC 59.505 47.826 0.00 0.00 45.00 2.97
2758 7405 4.693283 TGGATGCAACGAAGTAAGGATAG 58.307 43.478 0.00 0.00 45.00 2.08
2759 7406 4.746535 TGGATGCAACGAAGTAAGGATA 57.253 40.909 0.00 0.00 45.00 2.59
2760 7407 3.627395 TGGATGCAACGAAGTAAGGAT 57.373 42.857 0.00 0.00 45.00 3.24
2761 7408 3.007506 TCTTGGATGCAACGAAGTAAGGA 59.992 43.478 16.29 0.00 45.00 3.36
2762 7409 3.334691 TCTTGGATGCAACGAAGTAAGG 58.665 45.455 16.29 0.00 45.00 2.69
2763 7410 4.378459 GGTTCTTGGATGCAACGAAGTAAG 60.378 45.833 16.29 3.94 45.00 2.34
2764 7411 3.500680 GGTTCTTGGATGCAACGAAGTAA 59.499 43.478 16.29 8.42 45.00 2.24
2765 7412 3.071479 GGTTCTTGGATGCAACGAAGTA 58.929 45.455 16.29 6.33 45.00 2.24
2767 7414 2.154462 AGGTTCTTGGATGCAACGAAG 58.846 47.619 11.72 11.72 0.00 3.79
2768 7415 2.270352 AGGTTCTTGGATGCAACGAA 57.730 45.000 0.00 1.88 0.00 3.85
2769 7416 2.270352 AAGGTTCTTGGATGCAACGA 57.730 45.000 0.00 0.00 0.00 3.85
2770 7417 2.293122 TGAAAGGTTCTTGGATGCAACG 59.707 45.455 0.00 0.00 0.00 4.10
2811 7459 6.349944 CTTCAAGGAAGTATGCTGAAAAGCAT 60.350 38.462 16.65 16.65 42.73 3.79
2883 7531 4.593206 ACCTTGAACTCCACACTTCTCATA 59.407 41.667 0.00 0.00 0.00 2.15
2910 7558 1.979155 CTCTGCCGGGTCAGTCTCA 60.979 63.158 2.18 0.00 35.63 3.27
3006 7654 3.541996 ACATCATCGTAGCCAACATCA 57.458 42.857 0.00 0.00 0.00 3.07
3027 7675 1.140312 TTTGCTTCCTGACTCCACCT 58.860 50.000 0.00 0.00 0.00 4.00
3201 7849 5.418840 TGGGCCATTAATCAGAAAGAAGAAC 59.581 40.000 0.00 0.00 0.00 3.01
3634 8289 6.529125 ACGATTTCATCAAATTGAGCAATCAC 59.471 34.615 17.39 2.88 36.99 3.06
3957 8625 3.077359 AGGTGAGCTCTACAAAACATGC 58.923 45.455 16.19 0.00 0.00 4.06
4246 8925 4.223953 TGGCCAATAAGGTTTTACCACAA 58.776 39.130 0.61 0.00 41.95 3.33
4315 8994 0.393537 ACATGGTAAGCAGCTCAGGC 60.394 55.000 0.00 0.00 39.06 4.85
4369 9048 0.620700 ACCCCCTAGCCTTGTCGAAT 60.621 55.000 0.00 0.00 0.00 3.34
4463 9142 3.607641 CACACAAATTCACACACACACAC 59.392 43.478 0.00 0.00 0.00 3.82
4465 9144 4.090138 TCACACAAATTCACACACACAC 57.910 40.909 0.00 0.00 0.00 3.82
4467 9146 4.355543 ACTCACACAAATTCACACACAC 57.644 40.909 0.00 0.00 0.00 3.82
4736 9433 2.165998 GCTTTGAAGATCTGGTGCCTT 58.834 47.619 0.00 0.00 0.00 4.35
4913 9614 5.598417 TGCTAGTCCTACTGCAGATCAATTA 59.402 40.000 23.35 0.00 31.85 1.40
4961 9662 4.322057 AGAGGGTTGTATGCCAGAAAAT 57.678 40.909 0.00 0.00 0.00 1.82
5036 9749 1.262640 GGTTGTCCTTCCTCCGCCTA 61.263 60.000 0.00 0.00 0.00 3.93
5078 9791 3.008266 TGATCTCAGCAACCTCATCAACA 59.992 43.478 0.00 0.00 0.00 3.33
5225 9938 2.272146 GCCGGCTGATCAGGGAAA 59.728 61.111 22.15 0.00 0.00 3.13
5550 10275 4.683781 GCAGAGAGTATAAATCAAGAGGCG 59.316 45.833 0.00 0.00 0.00 5.52
5563 10288 9.757227 GACAAATAATTCTACTGCAGAGAGTAT 57.243 33.333 23.35 12.97 33.83 2.12
5565 10290 6.754209 CGACAAATAATTCTACTGCAGAGAGT 59.246 38.462 23.35 12.46 33.83 3.24
5566 10291 6.975197 TCGACAAATAATTCTACTGCAGAGAG 59.025 38.462 23.35 16.80 33.83 3.20
5567 10292 6.752351 GTCGACAAATAATTCTACTGCAGAGA 59.248 38.462 23.35 15.66 33.83 3.10
5568 10293 6.531594 TGTCGACAAATAATTCTACTGCAGAG 59.468 38.462 23.35 13.48 33.83 3.35
5569 10294 6.394809 TGTCGACAAATAATTCTACTGCAGA 58.605 36.000 23.35 2.95 0.00 4.26
5577 10302 9.832445 ACAACCTATATGTCGACAAATAATTCT 57.168 29.630 24.13 5.75 0.00 2.40
5580 10305 7.384115 CGGACAACCTATATGTCGACAAATAAT 59.616 37.037 24.13 15.38 46.41 1.28
5581 10306 6.698329 CGGACAACCTATATGTCGACAAATAA 59.302 38.462 24.13 8.98 46.41 1.40
5586 10311 2.359848 CCGGACAACCTATATGTCGACA 59.640 50.000 22.48 22.48 46.41 4.35
5587 10312 2.360165 ACCGGACAACCTATATGTCGAC 59.640 50.000 9.46 9.11 46.41 4.20
5615 11691 3.106242 AGAATGCAAAACCGGAAAACC 57.894 42.857 9.46 0.00 0.00 3.27
5616 11692 5.761818 CATAGAATGCAAAACCGGAAAAC 57.238 39.130 9.46 0.00 0.00 2.43
5636 11791 0.964358 GGCTGAGAGCTTGGTTGCAT 60.964 55.000 0.00 0.00 41.99 3.96
5637 11792 1.601759 GGCTGAGAGCTTGGTTGCA 60.602 57.895 0.00 0.00 41.99 4.08
5695 11897 1.370609 TCAACGGTGCGAACAAAAGA 58.629 45.000 0.00 0.00 0.00 2.52
5760 12182 1.268352 GTATGAACAAGCAAACCGGCA 59.732 47.619 0.00 0.00 35.83 5.69
5789 12211 2.353889 AGAATGACATGCAATCACTCGC 59.646 45.455 6.19 0.00 27.80 5.03
5790 12212 3.242641 CCAGAATGACATGCAATCACTCG 60.243 47.826 6.19 3.01 39.69 4.18
5852 12288 0.599558 CTGCACACATTTGAGGGTGG 59.400 55.000 0.00 0.00 39.31 4.61
5853 12289 1.608055 TCTGCACACATTTGAGGGTG 58.392 50.000 0.00 0.00 40.78 4.61
5854 12290 2.165167 CATCTGCACACATTTGAGGGT 58.835 47.619 0.00 0.00 0.00 4.34
5855 12291 2.165167 ACATCTGCACACATTTGAGGG 58.835 47.619 0.00 0.00 0.00 4.30
5856 12292 3.928727 AACATCTGCACACATTTGAGG 57.071 42.857 0.00 0.00 0.00 3.86
5857 12293 3.985279 CCAAACATCTGCACACATTTGAG 59.015 43.478 9.30 0.00 27.96 3.02
5858 12294 3.243805 CCCAAACATCTGCACACATTTGA 60.244 43.478 9.30 0.00 27.96 2.69
5859 12295 3.061322 CCCAAACATCTGCACACATTTG 58.939 45.455 0.00 0.00 0.00 2.32
5860 12296 2.964464 TCCCAAACATCTGCACACATTT 59.036 40.909 0.00 0.00 0.00 2.32
5861 12297 2.596346 TCCCAAACATCTGCACACATT 58.404 42.857 0.00 0.00 0.00 2.71
5862 12298 2.291209 TCCCAAACATCTGCACACAT 57.709 45.000 0.00 0.00 0.00 3.21
5863 12299 1.955778 CTTCCCAAACATCTGCACACA 59.044 47.619 0.00 0.00 0.00 3.72
5864 12300 2.229792 TCTTCCCAAACATCTGCACAC 58.770 47.619 0.00 0.00 0.00 3.82
5865 12301 2.655090 TCTTCCCAAACATCTGCACA 57.345 45.000 0.00 0.00 0.00 4.57
5866 12302 5.357878 TCAATATCTTCCCAAACATCTGCAC 59.642 40.000 0.00 0.00 0.00 4.57
5867 12303 5.508567 TCAATATCTTCCCAAACATCTGCA 58.491 37.500 0.00 0.00 0.00 4.41
5868 12304 6.294397 GGATCAATATCTTCCCAAACATCTGC 60.294 42.308 0.00 0.00 32.29 4.26
5869 12305 6.072838 CGGATCAATATCTTCCCAAACATCTG 60.073 42.308 0.00 0.00 32.29 2.90
5870 12306 6.000219 CGGATCAATATCTTCCCAAACATCT 59.000 40.000 0.00 0.00 32.29 2.90
5871 12307 5.182001 CCGGATCAATATCTTCCCAAACATC 59.818 44.000 0.00 0.00 32.29 3.06
5872 12308 5.072741 CCGGATCAATATCTTCCCAAACAT 58.927 41.667 0.00 0.00 32.29 2.71
5873 12309 4.165180 TCCGGATCAATATCTTCCCAAACA 59.835 41.667 0.00 0.00 32.29 2.83
5874 12310 4.714632 TCCGGATCAATATCTTCCCAAAC 58.285 43.478 0.00 0.00 32.29 2.93
5875 12311 4.412199 ACTCCGGATCAATATCTTCCCAAA 59.588 41.667 3.57 0.00 32.29 3.28
5876 12312 3.973973 ACTCCGGATCAATATCTTCCCAA 59.026 43.478 3.57 0.00 32.29 4.12
5877 12313 3.587498 ACTCCGGATCAATATCTTCCCA 58.413 45.455 3.57 0.00 32.29 4.37
5878 12314 5.246429 AGTTACTCCGGATCAATATCTTCCC 59.754 44.000 3.57 0.00 32.29 3.97
5879 12315 6.347859 AGTTACTCCGGATCAATATCTTCC 57.652 41.667 3.57 0.00 32.29 3.46
5880 12316 7.434492 TGAAGTTACTCCGGATCAATATCTTC 58.566 38.462 3.57 14.50 32.29 2.87
5881 12317 7.361457 TGAAGTTACTCCGGATCAATATCTT 57.639 36.000 3.57 6.43 32.29 2.40
5882 12318 6.978674 TGAAGTTACTCCGGATCAATATCT 57.021 37.500 3.57 0.00 32.29 1.98
5883 12319 6.647067 CCTTGAAGTTACTCCGGATCAATATC 59.353 42.308 14.56 9.89 0.00 1.63
5884 12320 6.099845 ACCTTGAAGTTACTCCGGATCAATAT 59.900 38.462 14.56 5.33 0.00 1.28
5885 12321 5.424252 ACCTTGAAGTTACTCCGGATCAATA 59.576 40.000 14.56 0.00 0.00 1.90
5886 12322 4.225267 ACCTTGAAGTTACTCCGGATCAAT 59.775 41.667 14.56 0.98 0.00 2.57
5887 12323 3.581332 ACCTTGAAGTTACTCCGGATCAA 59.419 43.478 3.57 10.28 0.00 2.57
5888 12324 3.170717 ACCTTGAAGTTACTCCGGATCA 58.829 45.455 3.57 0.80 0.00 2.92
5889 12325 3.430513 GGACCTTGAAGTTACTCCGGATC 60.431 52.174 3.57 0.00 0.00 3.36
5890 12326 2.500504 GGACCTTGAAGTTACTCCGGAT 59.499 50.000 3.57 0.00 0.00 4.18
5891 12327 1.897802 GGACCTTGAAGTTACTCCGGA 59.102 52.381 2.93 2.93 0.00 5.14
5892 12328 1.621814 TGGACCTTGAAGTTACTCCGG 59.378 52.381 0.00 0.00 0.00 5.14
5893 12329 3.396260 TTGGACCTTGAAGTTACTCCG 57.604 47.619 0.00 0.00 0.00 4.63
5894 12330 6.374613 CCTTATTTGGACCTTGAAGTTACTCC 59.625 42.308 0.00 0.00 0.00 3.85
5895 12331 7.166167 TCCTTATTTGGACCTTGAAGTTACTC 58.834 38.462 0.00 0.00 0.00 2.59
5896 12332 7.086685 TCCTTATTTGGACCTTGAAGTTACT 57.913 36.000 0.00 0.00 0.00 2.24
5897 12333 6.374613 CCTCCTTATTTGGACCTTGAAGTTAC 59.625 42.308 0.00 0.00 31.94 2.50
5898 12334 6.481643 CCTCCTTATTTGGACCTTGAAGTTA 58.518 40.000 0.00 0.00 31.94 2.24
5899 12335 5.325239 CCTCCTTATTTGGACCTTGAAGTT 58.675 41.667 0.00 0.00 31.94 2.66
5900 12336 4.263949 CCCTCCTTATTTGGACCTTGAAGT 60.264 45.833 0.00 0.00 31.94 3.01
5901 12337 4.273318 CCCTCCTTATTTGGACCTTGAAG 58.727 47.826 0.00 0.00 31.94 3.02
5902 12338 3.563479 GCCCTCCTTATTTGGACCTTGAA 60.563 47.826 0.00 0.00 31.94 2.69
5903 12339 2.025321 GCCCTCCTTATTTGGACCTTGA 60.025 50.000 0.00 0.00 31.94 3.02
5904 12340 2.291540 TGCCCTCCTTATTTGGACCTTG 60.292 50.000 0.00 0.00 31.94 3.61
5905 12341 2.000048 TGCCCTCCTTATTTGGACCTT 59.000 47.619 0.00 0.00 31.94 3.50
5906 12342 1.285078 GTGCCCTCCTTATTTGGACCT 59.715 52.381 0.00 0.00 31.94 3.85
5907 12343 1.005450 TGTGCCCTCCTTATTTGGACC 59.995 52.381 0.00 0.00 31.94 4.46
5908 12344 2.092323 GTGTGCCCTCCTTATTTGGAC 58.908 52.381 0.00 0.00 31.94 4.02
5909 12345 1.992557 AGTGTGCCCTCCTTATTTGGA 59.007 47.619 0.00 0.00 34.52 3.53
5910 12346 2.290896 TGAGTGTGCCCTCCTTATTTGG 60.291 50.000 0.00 0.00 0.00 3.28
5911 12347 3.071874 TGAGTGTGCCCTCCTTATTTG 57.928 47.619 0.00 0.00 0.00 2.32
5912 12348 3.806949 TTGAGTGTGCCCTCCTTATTT 57.193 42.857 0.00 0.00 0.00 1.40
5913 12349 3.806949 TTTGAGTGTGCCCTCCTTATT 57.193 42.857 0.00 0.00 0.00 1.40
5914 12350 3.010584 ACATTTGAGTGTGCCCTCCTTAT 59.989 43.478 0.00 0.00 0.00 1.73
5915 12351 2.375174 ACATTTGAGTGTGCCCTCCTTA 59.625 45.455 0.00 0.00 0.00 2.69
5916 12352 1.145738 ACATTTGAGTGTGCCCTCCTT 59.854 47.619 0.00 0.00 0.00 3.36
5917 12353 0.773644 ACATTTGAGTGTGCCCTCCT 59.226 50.000 0.00 0.00 0.00 3.69
5918 12354 0.883833 CACATTTGAGTGTGCCCTCC 59.116 55.000 0.00 0.00 42.51 4.30
5941 12377 6.000219 CGGATCAATATCTTCCCAAACATCT 59.000 40.000 0.00 0.00 32.29 2.90
5943 12379 5.072741 CCGGATCAATATCTTCCCAAACAT 58.927 41.667 0.00 0.00 32.29 2.71
5956 12392 5.424252 ACCTTGAAGTTACTCCGGATCAATA 59.576 40.000 14.56 0.00 0.00 1.90
6039 12488 1.742761 ATCCACACTTCCAAGCATCG 58.257 50.000 0.00 0.00 0.00 3.84
6069 12518 1.831652 CGGCCAGTTCTTCCACCTCT 61.832 60.000 2.24 0.00 0.00 3.69
6264 12714 1.741055 CGGTATAGTTGCAAGCCGGAA 60.741 52.381 5.05 0.00 36.05 4.30
6316 12789 6.012337 TGGAGGATAAATACCATCAGCAAA 57.988 37.500 0.00 0.00 0.00 3.68
6416 12890 2.158264 CCCCCTCAATATCATTTGGGCT 60.158 50.000 0.00 0.00 33.63 5.19
6420 12894 6.554605 ACCAAATACCCCCTCAATATCATTTG 59.445 38.462 0.00 0.00 33.83 2.32
6424 12898 4.480537 ACACCAAATACCCCCTCAATATCA 59.519 41.667 0.00 0.00 0.00 2.15
6456 12930 4.650734 TGTCTGGAATTACACATGCAGAA 58.349 39.130 0.00 0.00 44.10 3.02
6459 12933 4.140536 TGTTGTCTGGAATTACACATGCA 58.859 39.130 0.00 0.00 0.00 3.96
6460 12934 4.764679 TGTTGTCTGGAATTACACATGC 57.235 40.909 0.00 0.00 0.00 4.06
6461 12935 6.499234 TCATGTTGTCTGGAATTACACATG 57.501 37.500 10.55 10.55 36.96 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.