Multiple sequence alignment - TraesCS4A01G035300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G035300 chr4A 100.000 4776 0 0 1 4776 27567141 27571916 0.000000e+00 8820.0
1 TraesCS4A01G035300 chr4A 88.138 725 47 17 150 873 27556675 27557361 0.000000e+00 826.0
2 TraesCS4A01G035300 chr4D 92.699 3890 213 36 705 4573 438141749 438145588 0.000000e+00 5544.0
3 TraesCS4A01G035300 chr4D 95.902 122 5 0 154 275 438140813 438140934 1.050000e-46 198.0
4 TraesCS4A01G035300 chr4B 91.543 3784 225 43 813 4570 541900269 541903983 0.000000e+00 5127.0
5 TraesCS4A01G035300 chr4B 88.293 410 31 8 273 665 541898939 541899348 4.330000e-130 475.0
6 TraesCS4A01G035300 chr4B 94.309 123 7 0 154 276 541898781 541898903 6.310000e-44 189.0
7 TraesCS4A01G035300 chr3D 98.039 153 3 0 1 153 485708816 485708968 2.830000e-67 267.0
8 TraesCS4A01G035300 chr3D 97.419 155 4 0 1 155 254444972 254445126 1.020000e-66 265.0
9 TraesCS4A01G035300 chr2A 98.039 153 3 0 1 153 84837503 84837655 2.830000e-67 267.0
10 TraesCS4A01G035300 chr5D 96.815 157 4 1 1 156 73788743 73788899 1.320000e-65 261.0
11 TraesCS4A01G035300 chr5D 96.226 159 5 1 1 158 321590750 321590592 4.740000e-65 259.0
12 TraesCS4A01G035300 chr5D 92.655 177 9 4 1 174 80259801 80259626 7.930000e-63 252.0
13 TraesCS4A01G035300 chr5D 85.714 105 9 2 172 276 464526922 464527020 6.540000e-19 106.0
14 TraesCS4A01G035300 chr5D 82.243 107 11 3 172 276 464491020 464490920 8.520000e-13 86.1
15 TraesCS4A01G035300 chr5D 79.200 125 17 5 154 276 464496716 464496599 1.430000e-10 78.7
16 TraesCS4A01G035300 chr5D 89.474 57 4 2 222 276 464531368 464531424 2.380000e-08 71.3
17 TraesCS4A01G035300 chr2D 96.815 157 4 1 1 156 209074226 209074070 1.320000e-65 261.0
18 TraesCS4A01G035300 chr2D 94.012 167 8 2 1 165 155155522 155155356 7.930000e-63 252.0
19 TraesCS4A01G035300 chr7D 97.386 153 3 1 1 153 426443602 426443753 4.740000e-65 259.0
20 TraesCS4A01G035300 chr3B 84.672 137 14 3 4616 4752 661782274 661782145 3.880000e-26 130.0
21 TraesCS4A01G035300 chr5A 80.952 126 13 6 154 276 584970798 584970681 6.580000e-14 89.8
22 TraesCS4A01G035300 chr6D 80.208 96 12 2 181 276 441536024 441536112 1.110000e-06 65.8
23 TraesCS4A01G035300 chr6A 94.444 36 0 2 4617 4652 52597783 52597750 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G035300 chr4A 27567141 27571916 4775 False 8820.000000 8820 100.000000 1 4776 1 chr4A.!!$F2 4775
1 TraesCS4A01G035300 chr4A 27556675 27557361 686 False 826.000000 826 88.138000 150 873 1 chr4A.!!$F1 723
2 TraesCS4A01G035300 chr4D 438140813 438145588 4775 False 2871.000000 5544 94.300500 154 4573 2 chr4D.!!$F1 4419
3 TraesCS4A01G035300 chr4B 541898781 541903983 5202 False 1930.333333 5127 91.381667 154 4570 3 chr4B.!!$F1 4416

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.00 0.00 4.84 F
905 2055 0.107214 TCTCTATTTGCCAAGCCGGG 60.107 55.0 2.18 0.00 34.06 5.73 F
1684 2847 0.036164 TATGGGCACACTGACACCAC 59.964 55.0 0.00 0.00 33.42 4.16 F
1689 2852 0.814457 GCACACTGACACCACCAAAA 59.186 50.0 0.00 0.00 0.00 2.44 F
1974 3138 0.884704 TGCAGGTGAAAGTTCTCGCC 60.885 55.0 8.67 8.67 44.91 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1340 2503 1.012486 AAAACGCTAGCCGAACCTCG 61.012 55.000 9.66 0.0 41.02 4.63 R
2866 4033 1.340991 ACGCTCCCACTTTATTGGCAT 60.341 47.619 0.00 0.0 35.00 4.40 R
3508 4680 1.139853 GCCATCTCCAAGAAGGACGAT 59.860 52.381 2.53 0.0 43.07 3.73 R
3511 4683 1.472376 CGAGCCATCTCCAAGAAGGAC 60.472 57.143 2.53 0.0 43.07 3.85 R
3820 4992 2.945668 GGTATGTTGAGGAGCACATTCC 59.054 50.000 0.00 0.0 37.52 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.715896 TGAAGACGTACGACTACATCAAC 58.284 43.478 24.41 6.55 0.00 3.18
23 24 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
24 25 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
25 26 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
26 27 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
27 28 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
28 29 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
29 30 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
30 31 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
31 32 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
32 33 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
33 34 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
34 35 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
35 36 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
36 37 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
37 38 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
43 44 2.968179 CGTTGTGCTAACGCTTTCG 58.032 52.632 12.46 0.00 42.43 3.46
44 45 1.052768 CGTTGTGCTAACGCTTTCGC 61.053 55.000 12.46 0.00 39.84 4.70
45 46 0.234884 GTTGTGCTAACGCTTTCGCT 59.765 50.000 1.22 0.00 39.84 4.93
46 47 0.941542 TTGTGCTAACGCTTTCGCTT 59.058 45.000 1.22 0.00 39.84 4.68
47 48 0.941542 TGTGCTAACGCTTTCGCTTT 59.058 45.000 1.22 0.00 39.84 3.51
48 49 1.070175 TGTGCTAACGCTTTCGCTTTC 60.070 47.619 1.22 0.00 39.84 2.62
49 50 0.162933 TGCTAACGCTTTCGCTTTCG 59.837 50.000 1.22 0.00 39.84 3.46
50 51 0.518559 GCTAACGCTTTCGCTTTCGG 60.519 55.000 0.00 0.00 39.84 4.30
51 52 0.788391 CTAACGCTTTCGCTTTCGGT 59.212 50.000 0.00 0.00 39.84 4.69
52 53 0.785979 TAACGCTTTCGCTTTCGGTC 59.214 50.000 0.00 0.00 39.84 4.79
53 54 0.878961 AACGCTTTCGCTTTCGGTCT 60.879 50.000 0.00 0.00 39.84 3.85
54 55 0.038892 ACGCTTTCGCTTTCGGTCTA 60.039 50.000 0.00 0.00 39.84 2.59
55 56 0.365859 CGCTTTCGCTTTCGGTCTAC 59.634 55.000 0.00 0.00 36.13 2.59
56 57 0.365859 GCTTTCGCTTTCGGTCTACG 59.634 55.000 0.00 0.00 46.11 3.51
73 74 1.896220 ACGAGGGTACGTAGACAACA 58.104 50.000 0.00 0.00 44.72 3.33
74 75 1.537202 ACGAGGGTACGTAGACAACAC 59.463 52.381 0.00 0.00 44.72 3.32
75 76 1.808945 CGAGGGTACGTAGACAACACT 59.191 52.381 0.00 0.00 0.00 3.55
76 77 2.159599 CGAGGGTACGTAGACAACACTC 60.160 54.545 7.48 7.48 39.74 3.51
77 78 3.080319 GAGGGTACGTAGACAACACTCT 58.920 50.000 9.87 0.00 39.95 3.24
78 79 3.080319 AGGGTACGTAGACAACACTCTC 58.920 50.000 0.00 0.00 0.00 3.20
79 80 2.163211 GGGTACGTAGACAACACTCTCC 59.837 54.545 0.00 0.00 0.00 3.71
80 81 2.163211 GGTACGTAGACAACACTCTCCC 59.837 54.545 0.00 0.00 0.00 4.30
81 82 1.254954 ACGTAGACAACACTCTCCCC 58.745 55.000 0.00 0.00 0.00 4.81
82 83 1.203025 ACGTAGACAACACTCTCCCCT 60.203 52.381 0.00 0.00 0.00 4.79
83 84 1.473278 CGTAGACAACACTCTCCCCTC 59.527 57.143 0.00 0.00 0.00 4.30
84 85 2.810164 GTAGACAACACTCTCCCCTCT 58.190 52.381 0.00 0.00 0.00 3.69
85 86 1.931635 AGACAACACTCTCCCCTCTC 58.068 55.000 0.00 0.00 0.00 3.20
86 87 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
87 88 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
88 89 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
89 90 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
90 91 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
91 92 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
92 93 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
93 94 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
94 95 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
95 96 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
96 97 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
97 98 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
98 99 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
99 100 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
100 101 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
101 102 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
102 103 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
103 104 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
104 105 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
105 106 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
106 107 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
107 108 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
108 109 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
109 110 2.374170 TGCTATGCATCACCATGATCCT 59.626 45.455 0.19 0.00 34.28 3.24
110 111 2.747989 GCTATGCATCACCATGATCCTG 59.252 50.000 0.19 0.00 34.28 3.86
111 112 3.809678 GCTATGCATCACCATGATCCTGT 60.810 47.826 0.19 0.00 34.28 4.00
112 113 2.047002 TGCATCACCATGATCCTGTG 57.953 50.000 0.00 0.00 34.28 3.66
113 114 1.282738 TGCATCACCATGATCCTGTGT 59.717 47.619 0.00 0.00 34.28 3.72
114 115 1.674441 GCATCACCATGATCCTGTGTG 59.326 52.381 0.00 10.98 34.28 3.82
115 116 2.942752 GCATCACCATGATCCTGTGTGT 60.943 50.000 14.49 0.00 34.28 3.72
116 117 2.477845 TCACCATGATCCTGTGTGTG 57.522 50.000 14.49 8.57 0.00 3.82
117 118 1.699083 TCACCATGATCCTGTGTGTGT 59.301 47.619 14.49 0.00 0.00 3.72
118 119 1.808343 CACCATGATCCTGTGTGTGTG 59.192 52.381 0.00 2.36 0.00 3.82
119 120 1.421268 ACCATGATCCTGTGTGTGTGT 59.579 47.619 0.00 0.00 0.00 3.72
120 121 2.637382 ACCATGATCCTGTGTGTGTGTA 59.363 45.455 0.00 0.00 0.00 2.90
121 122 3.264947 CCATGATCCTGTGTGTGTGTAG 58.735 50.000 0.00 0.00 0.00 2.74
122 123 3.264947 CATGATCCTGTGTGTGTGTAGG 58.735 50.000 0.00 0.00 0.00 3.18
123 124 2.604139 TGATCCTGTGTGTGTGTAGGA 58.396 47.619 0.00 0.00 43.01 2.94
124 125 2.969262 TGATCCTGTGTGTGTGTAGGAA 59.031 45.455 0.00 0.00 42.20 3.36
125 126 3.389656 TGATCCTGTGTGTGTGTAGGAAA 59.610 43.478 0.00 0.00 42.20 3.13
126 127 3.916359 TCCTGTGTGTGTGTAGGAAAA 57.084 42.857 0.00 0.00 36.44 2.29
127 128 4.431416 TCCTGTGTGTGTGTAGGAAAAT 57.569 40.909 0.00 0.00 36.44 1.82
128 129 4.787551 TCCTGTGTGTGTGTAGGAAAATT 58.212 39.130 0.00 0.00 36.44 1.82
129 130 5.197451 TCCTGTGTGTGTGTAGGAAAATTT 58.803 37.500 0.00 0.00 36.44 1.82
130 131 5.654650 TCCTGTGTGTGTGTAGGAAAATTTT 59.345 36.000 2.28 2.28 36.44 1.82
131 132 5.748152 CCTGTGTGTGTGTAGGAAAATTTTG 59.252 40.000 8.47 0.00 31.91 2.44
132 133 6.405286 CCTGTGTGTGTGTAGGAAAATTTTGA 60.405 38.462 8.47 0.00 31.91 2.69
133 134 6.925211 TGTGTGTGTGTAGGAAAATTTTGAA 58.075 32.000 8.47 0.00 0.00 2.69
134 135 7.378966 TGTGTGTGTGTAGGAAAATTTTGAAA 58.621 30.769 8.47 0.00 0.00 2.69
135 136 8.037758 TGTGTGTGTGTAGGAAAATTTTGAAAT 58.962 29.630 8.47 0.00 0.00 2.17
136 137 8.878769 GTGTGTGTGTAGGAAAATTTTGAAATT 58.121 29.630 8.47 0.00 40.15 1.82
151 152 9.673454 AATTTTGAAATTACTACGTTCTCCAAC 57.327 29.630 0.00 0.00 36.88 3.77
159 160 2.109425 ACGTTCTCCAACAATAGCCC 57.891 50.000 0.00 0.00 32.14 5.19
305 347 5.003804 TCATCACCTCAACTTCCTTAAAGC 58.996 41.667 0.00 0.00 38.67 3.51
309 351 3.071167 ACCTCAACTTCCTTAAAGCGTCT 59.929 43.478 0.00 0.00 38.67 4.18
418 461 2.430332 GGAAATGATTTGGAATGGCCGA 59.570 45.455 0.00 0.00 40.66 5.54
439 482 1.374947 CGATGGTGGAAGTGGTGGT 59.625 57.895 0.00 0.00 0.00 4.16
546 589 0.179205 GACGAGCTGCAATTGCTGTC 60.179 55.000 30.32 24.51 41.30 3.51
551 610 3.346631 CTGCAATTGCTGTCGCCCC 62.347 63.158 29.37 0.00 42.66 5.80
574 633 2.811317 GAGCGGCGACTTGTCCAG 60.811 66.667 12.98 0.00 0.00 3.86
603 662 0.390998 TGCAAACGAGATGGCGATGA 60.391 50.000 0.00 0.00 34.83 2.92
712 1165 0.409876 CGATATCAGAGGGAGGGGGA 59.590 60.000 3.12 0.00 0.00 4.81
721 1174 2.768022 GGGAGGGGGAATGGCGAAT 61.768 63.158 0.00 0.00 0.00 3.34
732 1185 3.057596 GGAATGGCGAATCAAAGACAACA 60.058 43.478 0.00 0.00 0.00 3.33
738 1191 3.545228 GCGAATCAAAGACAACACAACGA 60.545 43.478 0.00 0.00 0.00 3.85
742 1195 1.837747 CAAAGACAACACAACGAACGC 59.162 47.619 0.00 0.00 0.00 4.84
791 1244 3.942748 GCCGGTCATCCAAAATAACAGTA 59.057 43.478 1.90 0.00 0.00 2.74
794 1247 6.494842 CCGGTCATCCAAAATAACAGTAATG 58.505 40.000 0.00 0.00 0.00 1.90
896 2046 2.158449 CGGCCGATGAATCTCTATTTGC 59.842 50.000 24.07 0.00 0.00 3.68
901 2051 4.320057 CCGATGAATCTCTATTTGCCAAGC 60.320 45.833 0.00 0.00 0.00 4.01
902 2052 4.320057 CGATGAATCTCTATTTGCCAAGCC 60.320 45.833 0.00 0.00 0.00 4.35
903 2053 2.945008 TGAATCTCTATTTGCCAAGCCG 59.055 45.455 0.00 0.00 0.00 5.52
904 2054 1.972872 ATCTCTATTTGCCAAGCCGG 58.027 50.000 0.00 0.00 38.11 6.13
905 2055 0.107214 TCTCTATTTGCCAAGCCGGG 60.107 55.000 2.18 0.00 34.06 5.73
906 2056 0.107214 CTCTATTTGCCAAGCCGGGA 60.107 55.000 2.18 0.00 34.06 5.14
907 2057 0.393808 TCTATTTGCCAAGCCGGGAC 60.394 55.000 2.18 0.00 32.85 4.46
932 2082 3.829026 GGGAGCATCAAAAGAACCTTCTT 59.171 43.478 0.00 0.00 43.15 2.52
970 2120 4.394712 CCCTTGACCGAAGCCGCT 62.395 66.667 0.00 0.00 0.00 5.52
973 2123 2.668212 TTGACCGAAGCCGCTTGG 60.668 61.111 11.20 14.17 0.00 3.61
1045 2195 2.044551 GCAGGGGCAGGAAGAAGG 60.045 66.667 0.00 0.00 40.72 3.46
1049 2199 2.351276 GGGCAGGAAGAAGGCGAA 59.649 61.111 0.00 0.00 0.00 4.70
1126 2279 2.678934 CCCCTCCGGAACACTCGA 60.679 66.667 5.23 0.00 0.00 4.04
1127 2280 2.572284 CCCTCCGGAACACTCGAC 59.428 66.667 5.23 0.00 0.00 4.20
1128 2281 2.178521 CCTCCGGAACACTCGACG 59.821 66.667 5.23 0.00 0.00 5.12
1218 2371 2.787994 CTGTTTGAGCTTCACTCCCAT 58.212 47.619 0.00 0.00 45.61 4.00
1304 2467 0.479378 AGTCGGTCCCTATCCTCTCC 59.521 60.000 0.00 0.00 0.00 3.71
1306 2469 0.772384 TCGGTCCCTATCCTCTCCTC 59.228 60.000 0.00 0.00 0.00 3.71
1308 2471 1.546773 CGGTCCCTATCCTCTCCTCTG 60.547 61.905 0.00 0.00 0.00 3.35
1337 2500 2.053627 GCAGGTGTTTGAGAAAATGCG 58.946 47.619 0.00 0.00 0.00 4.73
1340 2503 1.786579 GGTGTTTGAGAAAATGCGTGC 59.213 47.619 0.00 0.00 0.00 5.34
1432 2595 3.394674 TCCAGTGTTGAGCGAATACAA 57.605 42.857 0.00 0.00 0.00 2.41
1676 2839 2.268920 CTGCGGTATGGGCACACT 59.731 61.111 0.00 0.00 36.24 3.55
1678 2841 2.267642 GCGGTATGGGCACACTGA 59.732 61.111 0.00 0.00 0.00 3.41
1684 2847 0.036164 TATGGGCACACTGACACCAC 59.964 55.000 0.00 0.00 33.42 4.16
1689 2852 0.814457 GCACACTGACACCACCAAAA 59.186 50.000 0.00 0.00 0.00 2.44
1734 2897 4.243270 GACTGCGTTAGGTAGTTCACAAT 58.757 43.478 0.00 0.00 42.06 2.71
1747 2910 7.039784 AGGTAGTTCACAATGTGCATTATTGTT 60.040 33.333 22.23 14.18 44.04 2.83
1748 2911 7.062138 GGTAGTTCACAATGTGCATTATTGTTG 59.938 37.037 22.23 18.20 44.04 3.33
1754 2917 8.355913 TCACAATGTGCATTATTGTTGTCTTTA 58.644 29.630 22.23 6.65 44.04 1.85
1755 2918 8.976471 CACAATGTGCATTATTGTTGTCTTTAA 58.024 29.630 22.23 0.00 44.04 1.52
1788 2952 7.281040 TCTCAGAAAGCAGAAAACATCAATT 57.719 32.000 0.00 0.00 0.00 2.32
1796 2960 8.907222 AAGCAGAAAACATCAATTGGTTTAAT 57.093 26.923 11.63 3.53 45.30 1.40
1827 2991 8.874744 TTTTCTTCTTCTCATGGATCATTTCT 57.125 30.769 0.00 0.00 0.00 2.52
1834 2998 2.025131 TCATGGATCATTTCTGGGTGCA 60.025 45.455 0.00 0.00 0.00 4.57
1921 3085 6.951062 TGGTATCACACTTTTGATTGTTGA 57.049 33.333 0.00 0.00 37.42 3.18
1974 3138 0.884704 TGCAGGTGAAAGTTCTCGCC 60.885 55.000 8.67 8.67 44.91 5.54
2288 3452 5.789574 TGGGAGGGTTTATTCATGTTACT 57.210 39.130 0.00 0.00 0.00 2.24
2316 3480 4.818546 GCTCAGCAAAGCCATAAATCTAGA 59.181 41.667 0.00 0.00 36.22 2.43
2419 3583 8.802267 AGTTAAATCAGTTTTTATTAGCAGCCA 58.198 29.630 0.00 0.00 0.00 4.75
2462 3626 4.643784 AGAATGCTGATCCCAAGAATTGTC 59.356 41.667 0.00 0.00 46.99 3.18
2591 3758 6.481976 AGTCAAAACATATTTGTCTGACGTGA 59.518 34.615 17.76 0.00 34.06 4.35
2637 3804 8.911918 ATAACGATACATTGGCCAGTATTTTA 57.088 30.769 16.47 15.82 31.45 1.52
2721 3888 4.086457 TGTCTAAAAGGGAAATTCCTGGC 58.914 43.478 12.28 0.00 37.20 4.85
2841 4008 4.384846 CGATACCTACGCGCAAAGAATATT 59.615 41.667 5.73 0.00 0.00 1.28
2866 4033 4.400884 TGGCAAAGCTAAACAGTTTGAAGA 59.599 37.500 8.93 0.00 33.78 2.87
3053 4220 9.601217 AGTCATACAAGTAATACTTCATTCCAC 57.399 33.333 2.14 0.00 36.03 4.02
3084 4252 5.571784 TCATGCTGAGAAAAATGCTTAGG 57.428 39.130 0.00 0.00 0.00 2.69
3327 4499 9.745880 AGTTGTAGTACATAAATAGGTGATTCG 57.254 33.333 3.28 0.00 0.00 3.34
3363 4535 7.390027 AGATACTCCTATCACATGCCAAATAC 58.610 38.462 0.00 0.00 32.36 1.89
3511 4683 9.422196 GTTAAGCTTGCTATTACAACTTTATCG 57.578 33.333 9.86 0.00 0.00 2.92
3760 4932 4.147219 ACGATCAAAGCTTGTTTGCTAC 57.853 40.909 0.00 0.00 43.24 3.58
3820 4992 5.977129 GCAACAATGTATTTTTCCCTATCCG 59.023 40.000 0.00 0.00 0.00 4.18
3828 5000 2.341846 TTTCCCTATCCGGAATGTGC 57.658 50.000 9.01 0.00 41.56 4.57
3877 5053 4.761739 TGTTCTTTTAACAGCCCATCAGAG 59.238 41.667 0.00 0.00 0.00 3.35
3879 5055 3.009473 TCTTTTAACAGCCCATCAGAGCT 59.991 43.478 0.00 0.00 40.89 4.09
4003 5180 4.517285 AGTACACTCAAATAGGCACCATG 58.483 43.478 0.00 0.00 0.00 3.66
4059 5239 5.392767 AGCATATCACCTGTCTATAACCG 57.607 43.478 0.00 0.00 0.00 4.44
4067 5247 3.050619 CCTGTCTATAACCGCACGAATC 58.949 50.000 0.00 0.00 0.00 2.52
4134 5314 9.529325 AAAATCATATTCATTGTGCATCTTCAG 57.471 29.630 0.00 0.00 0.00 3.02
4141 5321 8.969260 ATTCATTGTGCATCTTCAGTATCTTA 57.031 30.769 0.00 0.00 0.00 2.10
4163 5344 8.415553 TCTTATATTGCAGACATTTTGGAATGG 58.584 33.333 4.39 0.00 45.56 3.16
4232 5416 5.221322 ACAAGTTCTCTTTGAGGAATTTGGC 60.221 40.000 12.78 0.00 40.76 4.52
4237 5421 5.640147 TCTCTTTGAGGAATTTGGCCTTTA 58.360 37.500 3.32 0.00 35.44 1.85
4253 5437 5.303078 TGGCCTTTAATGTGCTTTTCAGTTA 59.697 36.000 3.32 0.00 0.00 2.24
4287 5472 8.075574 TGACCATATGCTTTGCTAATAAATTCG 58.924 33.333 0.00 0.00 0.00 3.34
4317 5502 9.574516 AACTTCACATAAGATTTCCTTACAACT 57.425 29.630 0.00 0.00 39.93 3.16
4318 5503 9.003658 ACTTCACATAAGATTTCCTTACAACTG 57.996 33.333 0.00 0.00 39.93 3.16
4322 5507 9.436957 CACATAAGATTTCCTTACAACTGTAGT 57.563 33.333 0.00 0.00 39.93 2.73
4361 5546 7.903995 TGAATTTGATTGGCCAAATAAGTTC 57.096 32.000 27.81 27.81 43.61 3.01
4399 5585 7.041984 GCTTCTTATTCAACGTAATCTAAGGGG 60.042 40.741 0.00 0.00 0.00 4.79
4401 5587 3.985019 TTCAACGTAATCTAAGGGGCA 57.015 42.857 0.00 0.00 0.00 5.36
4404 5590 2.943033 CAACGTAATCTAAGGGGCAAGG 59.057 50.000 0.00 0.00 0.00 3.61
4431 5617 6.073003 AGCTCTACAAATAACTCAAGTGTTGC 60.073 38.462 0.00 0.00 0.00 4.17
4460 5646 5.127519 TGCAAATAGGTTCATGGAATCCAAG 59.872 40.000 5.89 0.99 36.95 3.61
4574 5761 3.777465 CATGAGCTTCATGTTTCCTGG 57.223 47.619 14.42 0.00 46.80 4.45
4575 5762 2.205022 TGAGCTTCATGTTTCCTGGG 57.795 50.000 0.00 0.00 0.00 4.45
4576 5763 1.704628 TGAGCTTCATGTTTCCTGGGA 59.295 47.619 0.00 0.00 0.00 4.37
4577 5764 2.108075 TGAGCTTCATGTTTCCTGGGAA 59.892 45.455 0.00 0.00 0.00 3.97
4578 5765 3.157087 GAGCTTCATGTTTCCTGGGAAA 58.843 45.455 10.38 10.38 41.22 3.13
4579 5766 3.573967 GAGCTTCATGTTTCCTGGGAAAA 59.426 43.478 15.31 7.62 44.40 2.29
4580 5767 3.966665 AGCTTCATGTTTCCTGGGAAAAA 59.033 39.130 15.31 11.35 44.40 1.94
4603 5790 7.511959 AAAGACACTCTTAATCAAACCTTCC 57.488 36.000 0.00 0.00 35.27 3.46
4604 5791 6.187727 AGACACTCTTAATCAAACCTTCCA 57.812 37.500 0.00 0.00 0.00 3.53
4605 5792 6.784031 AGACACTCTTAATCAAACCTTCCAT 58.216 36.000 0.00 0.00 0.00 3.41
4606 5793 7.918076 AGACACTCTTAATCAAACCTTCCATA 58.082 34.615 0.00 0.00 0.00 2.74
4607 5794 8.043710 AGACACTCTTAATCAAACCTTCCATAG 58.956 37.037 0.00 0.00 0.00 2.23
4608 5795 6.599638 ACACTCTTAATCAAACCTTCCATAGC 59.400 38.462 0.00 0.00 0.00 2.97
4609 5796 6.599244 CACTCTTAATCAAACCTTCCATAGCA 59.401 38.462 0.00 0.00 0.00 3.49
4610 5797 6.599638 ACTCTTAATCAAACCTTCCATAGCAC 59.400 38.462 0.00 0.00 0.00 4.40
4611 5798 6.480763 TCTTAATCAAACCTTCCATAGCACA 58.519 36.000 0.00 0.00 0.00 4.57
4612 5799 6.374333 TCTTAATCAAACCTTCCATAGCACAC 59.626 38.462 0.00 0.00 0.00 3.82
4613 5800 3.788227 TCAAACCTTCCATAGCACACT 57.212 42.857 0.00 0.00 0.00 3.55
4614 5801 4.901197 TCAAACCTTCCATAGCACACTA 57.099 40.909 0.00 0.00 0.00 2.74
4615 5802 4.832248 TCAAACCTTCCATAGCACACTAG 58.168 43.478 0.00 0.00 0.00 2.57
4616 5803 2.990066 ACCTTCCATAGCACACTAGC 57.010 50.000 0.00 0.00 0.00 3.42
4617 5804 2.187958 ACCTTCCATAGCACACTAGCA 58.812 47.619 0.00 0.00 36.85 3.49
4618 5805 2.774234 ACCTTCCATAGCACACTAGCAT 59.226 45.455 0.00 0.00 36.85 3.79
4619 5806 3.967326 ACCTTCCATAGCACACTAGCATA 59.033 43.478 0.00 0.00 36.85 3.14
4620 5807 4.039730 ACCTTCCATAGCACACTAGCATAG 59.960 45.833 0.00 0.00 46.50 2.23
4621 5808 3.667497 TCCATAGCACACTAGCATAGC 57.333 47.619 0.00 0.00 44.39 2.97
4622 5809 2.300152 TCCATAGCACACTAGCATAGCC 59.700 50.000 0.00 0.00 44.39 3.93
4623 5810 2.301296 CCATAGCACACTAGCATAGCCT 59.699 50.000 0.00 0.00 44.39 4.58
4624 5811 3.511540 CCATAGCACACTAGCATAGCCTA 59.488 47.826 0.00 0.00 44.39 3.93
4625 5812 4.381398 CCATAGCACACTAGCATAGCCTAG 60.381 50.000 0.00 0.00 44.39 3.02
4626 5813 2.672098 AGCACACTAGCATAGCCTAGT 58.328 47.619 0.00 0.00 46.69 2.57
4632 5819 4.119556 ACTAGCATAGCCTAGTGATGGA 57.880 45.455 1.38 0.00 44.67 3.41
4633 5820 4.483950 ACTAGCATAGCCTAGTGATGGAA 58.516 43.478 1.38 0.00 44.67 3.53
4634 5821 4.901849 ACTAGCATAGCCTAGTGATGGAAA 59.098 41.667 1.38 0.00 44.67 3.13
4635 5822 4.348863 AGCATAGCCTAGTGATGGAAAG 57.651 45.455 0.00 0.00 0.00 2.62
4636 5823 3.072184 AGCATAGCCTAGTGATGGAAAGG 59.928 47.826 0.00 0.00 0.00 3.11
4637 5824 3.808618 GCATAGCCTAGTGATGGAAAGGG 60.809 52.174 0.00 0.00 0.00 3.95
4638 5825 1.216990 AGCCTAGTGATGGAAAGGGG 58.783 55.000 0.00 0.00 0.00 4.79
4639 5826 0.466372 GCCTAGTGATGGAAAGGGGC 60.466 60.000 0.00 0.00 0.00 5.80
4640 5827 1.216990 CCTAGTGATGGAAAGGGGCT 58.783 55.000 0.00 0.00 0.00 5.19
4641 5828 1.133976 CCTAGTGATGGAAAGGGGCTG 60.134 57.143 0.00 0.00 0.00 4.85
4642 5829 1.839994 CTAGTGATGGAAAGGGGCTGA 59.160 52.381 0.00 0.00 0.00 4.26
4643 5830 1.302907 AGTGATGGAAAGGGGCTGAT 58.697 50.000 0.00 0.00 0.00 2.90
4644 5831 1.064166 AGTGATGGAAAGGGGCTGATG 60.064 52.381 0.00 0.00 0.00 3.07
4645 5832 1.064463 GTGATGGAAAGGGGCTGATGA 60.064 52.381 0.00 0.00 0.00 2.92
4646 5833 1.064463 TGATGGAAAGGGGCTGATGAC 60.064 52.381 0.00 0.00 0.00 3.06
4647 5834 0.259938 ATGGAAAGGGGCTGATGACC 59.740 55.000 0.00 0.00 41.93 4.02
4648 5835 0.846427 TGGAAAGGGGCTGATGACCT 60.846 55.000 0.00 0.00 42.43 3.85
4649 5836 0.106967 GGAAAGGGGCTGATGACCTC 60.107 60.000 0.00 0.00 42.43 3.85
4650 5837 0.106967 GAAAGGGGCTGATGACCTCC 60.107 60.000 0.00 0.00 42.43 4.30
4651 5838 1.575447 AAAGGGGCTGATGACCTCCC 61.575 60.000 0.00 0.00 42.43 4.30
4652 5839 2.692368 GGGGCTGATGACCTCCCA 60.692 66.667 0.00 0.00 42.43 4.37
4653 5840 2.592308 GGGCTGATGACCTCCCAC 59.408 66.667 0.00 0.00 38.69 4.61
4654 5841 2.592308 GGCTGATGACCTCCCACC 59.408 66.667 0.00 0.00 0.00 4.61
4655 5842 2.300967 GGCTGATGACCTCCCACCA 61.301 63.158 0.00 0.00 0.00 4.17
4656 5843 1.685224 GCTGATGACCTCCCACCAA 59.315 57.895 0.00 0.00 0.00 3.67
4657 5844 0.678048 GCTGATGACCTCCCACCAAC 60.678 60.000 0.00 0.00 0.00 3.77
4658 5845 0.035056 CTGATGACCTCCCACCAACC 60.035 60.000 0.00 0.00 0.00 3.77
4659 5846 1.303282 GATGACCTCCCACCAACCC 59.697 63.158 0.00 0.00 0.00 4.11
4660 5847 1.465188 ATGACCTCCCACCAACCCA 60.465 57.895 0.00 0.00 0.00 4.51
4661 5848 1.500783 ATGACCTCCCACCAACCCAG 61.501 60.000 0.00 0.00 0.00 4.45
4662 5849 2.858974 ACCTCCCACCAACCCAGG 60.859 66.667 0.00 0.00 0.00 4.45
4663 5850 2.531685 CCTCCCACCAACCCAGGA 60.532 66.667 0.00 0.00 0.00 3.86
4664 5851 1.930656 CCTCCCACCAACCCAGGAT 60.931 63.158 0.00 0.00 0.00 3.24
4665 5852 1.609783 CTCCCACCAACCCAGGATC 59.390 63.158 0.00 0.00 0.00 3.36
4666 5853 1.151699 TCCCACCAACCCAGGATCA 60.152 57.895 0.00 0.00 0.00 2.92
4667 5854 0.774096 TCCCACCAACCCAGGATCAA 60.774 55.000 0.00 0.00 0.00 2.57
4668 5855 0.323725 CCCACCAACCCAGGATCAAG 60.324 60.000 0.00 0.00 0.00 3.02
4669 5856 0.698238 CCACCAACCCAGGATCAAGA 59.302 55.000 0.00 0.00 0.00 3.02
4670 5857 1.614317 CCACCAACCCAGGATCAAGAC 60.614 57.143 0.00 0.00 0.00 3.01
4671 5858 1.073763 CACCAACCCAGGATCAAGACA 59.926 52.381 0.00 0.00 0.00 3.41
4672 5859 1.995542 ACCAACCCAGGATCAAGACAT 59.004 47.619 0.00 0.00 0.00 3.06
4673 5860 2.291153 ACCAACCCAGGATCAAGACATG 60.291 50.000 0.00 0.00 0.00 3.21
4674 5861 2.372264 CAACCCAGGATCAAGACATGG 58.628 52.381 0.00 0.00 38.67 3.66
4675 5862 1.673767 ACCCAGGATCAAGACATGGT 58.326 50.000 0.00 0.00 37.48 3.55
4676 5863 2.845659 ACCCAGGATCAAGACATGGTA 58.154 47.619 0.00 0.00 37.48 3.25
4677 5864 2.774234 ACCCAGGATCAAGACATGGTAG 59.226 50.000 0.00 0.00 37.48 3.18
4678 5865 2.774234 CCCAGGATCAAGACATGGTAGT 59.226 50.000 0.00 0.00 37.48 2.73
4679 5866 3.200825 CCCAGGATCAAGACATGGTAGTT 59.799 47.826 0.00 0.00 37.48 2.24
4680 5867 4.194640 CCAGGATCAAGACATGGTAGTTG 58.805 47.826 0.00 0.00 34.97 3.16
4681 5868 3.624861 CAGGATCAAGACATGGTAGTTGC 59.375 47.826 0.00 0.00 0.00 4.17
4682 5869 3.264193 AGGATCAAGACATGGTAGTTGCA 59.736 43.478 0.00 0.00 0.00 4.08
4683 5870 4.009675 GGATCAAGACATGGTAGTTGCAA 58.990 43.478 0.00 0.00 0.00 4.08
4684 5871 4.641989 GGATCAAGACATGGTAGTTGCAAT 59.358 41.667 0.59 0.00 0.00 3.56
4685 5872 5.126061 GGATCAAGACATGGTAGTTGCAATT 59.874 40.000 0.59 0.00 0.00 2.32
4686 5873 6.350445 GGATCAAGACATGGTAGTTGCAATTT 60.350 38.462 0.59 0.00 0.00 1.82
4687 5874 5.771469 TCAAGACATGGTAGTTGCAATTTG 58.229 37.500 0.59 0.00 0.00 2.32
4688 5875 4.789012 AGACATGGTAGTTGCAATTTGG 57.211 40.909 0.59 0.00 0.00 3.28
4689 5876 3.511146 AGACATGGTAGTTGCAATTTGGG 59.489 43.478 0.59 0.00 0.00 4.12
4690 5877 3.238597 ACATGGTAGTTGCAATTTGGGT 58.761 40.909 0.59 0.00 0.00 4.51
4691 5878 3.258123 ACATGGTAGTTGCAATTTGGGTC 59.742 43.478 0.59 0.00 0.00 4.46
4692 5879 3.237268 TGGTAGTTGCAATTTGGGTCT 57.763 42.857 0.59 0.00 0.00 3.85
4693 5880 2.890311 TGGTAGTTGCAATTTGGGTCTG 59.110 45.455 0.59 0.00 0.00 3.51
4694 5881 2.890945 GGTAGTTGCAATTTGGGTCTGT 59.109 45.455 0.59 0.00 0.00 3.41
4695 5882 3.320826 GGTAGTTGCAATTTGGGTCTGTT 59.679 43.478 0.59 0.00 0.00 3.16
4696 5883 3.457610 AGTTGCAATTTGGGTCTGTTG 57.542 42.857 0.59 0.00 0.00 3.33
4697 5884 1.866601 GTTGCAATTTGGGTCTGTTGC 59.133 47.619 0.59 2.25 45.27 4.17
4698 5885 3.984838 GCAATTTGGGTCTGTTGCA 57.015 47.368 4.26 0.00 44.63 4.08
4699 5886 1.501169 GCAATTTGGGTCTGTTGCAC 58.499 50.000 4.26 0.00 44.63 4.57
4700 5887 1.873486 GCAATTTGGGTCTGTTGCACC 60.873 52.381 4.26 0.00 44.63 5.01
4701 5888 1.411977 CAATTTGGGTCTGTTGCACCA 59.588 47.619 0.00 0.00 35.35 4.17
4702 5889 1.786937 ATTTGGGTCTGTTGCACCAA 58.213 45.000 0.31 0.31 40.94 3.67
4703 5890 1.786937 TTTGGGTCTGTTGCACCAAT 58.213 45.000 5.16 0.00 42.09 3.16
4704 5891 1.327303 TTGGGTCTGTTGCACCAATC 58.673 50.000 0.31 0.00 38.02 2.67
4705 5892 0.184692 TGGGTCTGTTGCACCAATCA 59.815 50.000 0.00 0.00 35.35 2.57
4706 5893 1.327303 GGGTCTGTTGCACCAATCAA 58.673 50.000 0.00 0.00 35.35 2.57
4707 5894 1.000274 GGGTCTGTTGCACCAATCAAC 60.000 52.381 0.00 0.00 42.91 3.18
4715 5902 5.207305 GTTGCACCAATCAACAATTATGC 57.793 39.130 0.00 0.00 42.35 3.14
4716 5903 4.804868 TGCACCAATCAACAATTATGCT 57.195 36.364 0.00 0.00 38.54 3.79
4717 5904 4.496360 TGCACCAATCAACAATTATGCTG 58.504 39.130 0.00 0.00 38.54 4.41
4718 5905 4.021280 TGCACCAATCAACAATTATGCTGT 60.021 37.500 0.00 0.00 38.54 4.40
4719 5906 5.184671 TGCACCAATCAACAATTATGCTGTA 59.815 36.000 0.00 0.00 38.54 2.74
4720 5907 5.745294 GCACCAATCAACAATTATGCTGTAG 59.255 40.000 0.00 0.00 36.44 2.74
4721 5908 6.267817 CACCAATCAACAATTATGCTGTAGG 58.732 40.000 0.00 0.00 0.00 3.18
4722 5909 5.360714 ACCAATCAACAATTATGCTGTAGGG 59.639 40.000 0.00 0.00 0.00 3.53
4723 5910 5.221303 CCAATCAACAATTATGCTGTAGGGG 60.221 44.000 0.00 0.00 0.00 4.79
4724 5911 3.287222 TCAACAATTATGCTGTAGGGGC 58.713 45.455 0.00 0.00 0.00 5.80
4725 5912 2.362077 CAACAATTATGCTGTAGGGGCC 59.638 50.000 0.00 0.00 0.00 5.80
4726 5913 1.852965 ACAATTATGCTGTAGGGGCCT 59.147 47.619 0.84 0.00 0.00 5.19
4727 5914 2.158608 ACAATTATGCTGTAGGGGCCTC 60.159 50.000 0.84 0.00 0.00 4.70
4728 5915 1.068121 ATTATGCTGTAGGGGCCTCC 58.932 55.000 0.00 0.00 0.00 4.30
4730 5917 0.030092 TATGCTGTAGGGGCCTCCTT 60.030 55.000 16.84 2.29 45.47 3.36
4731 5918 0.921256 ATGCTGTAGGGGCCTCCTTT 60.921 55.000 16.84 0.00 45.47 3.11
4732 5919 0.252974 TGCTGTAGGGGCCTCCTTTA 60.253 55.000 16.84 6.94 45.47 1.85
4733 5920 0.180642 GCTGTAGGGGCCTCCTTTAC 59.819 60.000 16.84 11.05 45.47 2.01
4734 5921 1.580059 CTGTAGGGGCCTCCTTTACA 58.420 55.000 16.84 14.42 45.47 2.41
4735 5922 1.486726 CTGTAGGGGCCTCCTTTACAG 59.513 57.143 20.10 20.10 45.47 2.74
4736 5923 1.203389 TGTAGGGGCCTCCTTTACAGT 60.203 52.381 16.84 0.00 45.47 3.55
4737 5924 1.485480 GTAGGGGCCTCCTTTACAGTC 59.515 57.143 16.84 0.00 45.47 3.51
4738 5925 0.178873 AGGGGCCTCCTTTACAGTCA 60.179 55.000 0.00 0.00 45.47 3.41
4739 5926 0.919710 GGGGCCTCCTTTACAGTCAT 59.080 55.000 0.84 0.00 0.00 3.06
4740 5927 1.285078 GGGGCCTCCTTTACAGTCATT 59.715 52.381 0.84 0.00 0.00 2.57
4741 5928 2.644676 GGGCCTCCTTTACAGTCATTC 58.355 52.381 0.84 0.00 0.00 2.67
4742 5929 2.239907 GGGCCTCCTTTACAGTCATTCT 59.760 50.000 0.84 0.00 0.00 2.40
4743 5930 3.454812 GGGCCTCCTTTACAGTCATTCTA 59.545 47.826 0.84 0.00 0.00 2.10
4744 5931 4.103311 GGGCCTCCTTTACAGTCATTCTAT 59.897 45.833 0.84 0.00 0.00 1.98
4745 5932 5.307196 GGGCCTCCTTTACAGTCATTCTATA 59.693 44.000 0.84 0.00 0.00 1.31
4746 5933 6.183361 GGGCCTCCTTTACAGTCATTCTATAA 60.183 42.308 0.84 0.00 0.00 0.98
4747 5934 7.280356 GGCCTCCTTTACAGTCATTCTATAAA 58.720 38.462 0.00 0.00 0.00 1.40
4748 5935 7.773690 GGCCTCCTTTACAGTCATTCTATAAAA 59.226 37.037 0.00 0.00 26.74 1.52
4749 5936 9.174166 GCCTCCTTTACAGTCATTCTATAAAAA 57.826 33.333 0.00 0.00 26.74 1.94
4774 5961 9.990360 AAAAATCAAACCTTCCATAATTACGTT 57.010 25.926 0.00 0.00 0.00 3.99
4775 5962 8.980143 AAATCAAACCTTCCATAATTACGTTG 57.020 30.769 0.00 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
1 2 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
2 3 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
3 4 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
4 5 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
5 6 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
6 7 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
7 8 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
8 9 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
9 10 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
10 11 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
11 12 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
12 13 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
13 14 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
14 15 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
15 16 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
16 17 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
17 18 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
18 19 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
38 39 1.912110 CTCGTAGACCGAAAGCGAAAG 59.088 52.381 0.00 0.00 46.75 2.62
39 40 1.401931 CCTCGTAGACCGAAAGCGAAA 60.402 52.381 0.00 0.00 46.75 3.46
40 41 0.169672 CCTCGTAGACCGAAAGCGAA 59.830 55.000 0.00 0.00 46.75 4.70
41 42 1.651240 CCCTCGTAGACCGAAAGCGA 61.651 60.000 0.00 0.00 46.75 4.93
42 43 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
43 44 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
44 45 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
45 46 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
46 47 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
47 48 0.821517 TACGTACCCTCGTAGACCGA 59.178 55.000 0.00 0.00 45.00 4.69
48 49 3.362581 TACGTACCCTCGTAGACCG 57.637 57.895 0.00 0.00 43.80 4.79
53 54 2.742053 GTGTTGTCTACGTACCCTCGTA 59.258 50.000 0.00 0.00 43.80 3.43
54 55 1.537202 GTGTTGTCTACGTACCCTCGT 59.463 52.381 0.00 0.00 45.97 4.18
55 56 1.808945 AGTGTTGTCTACGTACCCTCG 59.191 52.381 0.00 0.00 0.00 4.63
56 57 3.080319 AGAGTGTTGTCTACGTACCCTC 58.920 50.000 0.00 0.00 0.00 4.30
57 58 3.080319 GAGAGTGTTGTCTACGTACCCT 58.920 50.000 0.00 0.00 0.00 4.34
58 59 2.163211 GGAGAGTGTTGTCTACGTACCC 59.837 54.545 0.00 0.00 0.00 3.69
59 60 2.163211 GGGAGAGTGTTGTCTACGTACC 59.837 54.545 0.00 0.00 0.00 3.34
60 61 2.163211 GGGGAGAGTGTTGTCTACGTAC 59.837 54.545 0.00 0.00 0.00 3.67
61 62 2.040813 AGGGGAGAGTGTTGTCTACGTA 59.959 50.000 0.00 0.00 0.00 3.57
62 63 1.203025 AGGGGAGAGTGTTGTCTACGT 60.203 52.381 0.00 0.00 0.00 3.57
63 64 1.473278 GAGGGGAGAGTGTTGTCTACG 59.527 57.143 0.00 0.00 0.00 3.51
64 65 2.756207 GAGAGGGGAGAGTGTTGTCTAC 59.244 54.545 0.00 0.00 0.00 2.59
65 66 2.618302 CGAGAGGGGAGAGTGTTGTCTA 60.618 54.545 0.00 0.00 0.00 2.59
66 67 1.888826 CGAGAGGGGAGAGTGTTGTCT 60.889 57.143 0.00 0.00 0.00 3.41
67 68 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
68 69 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
69 70 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
70 71 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
71 72 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
72 73 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
73 74 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
74 75 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
75 76 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
76 77 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
77 78 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
78 79 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
79 80 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
80 81 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
81 82 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
82 83 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
83 84 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
84 85 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
85 86 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
86 87 3.057736 GGATCATGGTGATGCATAGCAAC 60.058 47.826 0.00 0.00 43.55 4.17
87 88 3.151554 GGATCATGGTGATGCATAGCAA 58.848 45.455 0.00 0.00 43.55 3.91
88 89 2.374170 AGGATCATGGTGATGCATAGCA 59.626 45.455 12.83 4.86 46.03 3.49
89 90 2.747989 CAGGATCATGGTGATGCATAGC 59.252 50.000 12.83 0.00 46.03 2.97
90 91 3.751698 CACAGGATCATGGTGATGCATAG 59.248 47.826 12.66 5.87 46.03 2.23
91 92 3.136992 ACACAGGATCATGGTGATGCATA 59.863 43.478 12.66 0.00 46.03 3.14
92 93 2.092049 ACACAGGATCATGGTGATGCAT 60.092 45.455 12.66 0.00 46.03 3.96
93 94 1.282738 ACACAGGATCATGGTGATGCA 59.717 47.619 12.66 0.00 46.03 3.96
94 95 1.674441 CACACAGGATCATGGTGATGC 59.326 52.381 18.31 3.59 44.29 3.91
95 96 2.681344 CACACACAGGATCATGGTGATG 59.319 50.000 25.47 18.22 37.20 3.07
96 97 2.306805 ACACACACAGGATCATGGTGAT 59.693 45.455 25.47 15.18 40.34 3.06
97 98 1.699083 ACACACACAGGATCATGGTGA 59.301 47.619 25.47 0.00 36.42 4.02
98 99 1.808343 CACACACACAGGATCATGGTG 59.192 52.381 20.27 20.27 38.47 4.17
99 100 1.421268 ACACACACACAGGATCATGGT 59.579 47.619 12.66 4.08 0.00 3.55
100 101 2.189594 ACACACACACAGGATCATGG 57.810 50.000 12.66 3.43 0.00 3.66
101 102 3.055891 TCCTACACACACACAGGATCATG 60.056 47.826 5.68 5.68 32.20 3.07
102 103 3.173151 TCCTACACACACACAGGATCAT 58.827 45.455 0.00 0.00 32.20 2.45
103 104 2.604139 TCCTACACACACACAGGATCA 58.396 47.619 0.00 0.00 32.20 2.92
104 105 3.678056 TTCCTACACACACACAGGATC 57.322 47.619 0.00 0.00 37.06 3.36
105 106 4.431416 TTTTCCTACACACACACAGGAT 57.569 40.909 0.00 0.00 37.06 3.24
106 107 3.916359 TTTTCCTACACACACACAGGA 57.084 42.857 0.00 0.00 35.38 3.86
107 108 5.514274 AAATTTTCCTACACACACACAGG 57.486 39.130 0.00 0.00 0.00 4.00
108 109 6.559810 TCAAAATTTTCCTACACACACACAG 58.440 36.000 0.00 0.00 0.00 3.66
109 110 6.516739 TCAAAATTTTCCTACACACACACA 57.483 33.333 0.00 0.00 0.00 3.72
110 111 7.820044 TTTCAAAATTTTCCTACACACACAC 57.180 32.000 0.00 0.00 0.00 3.82
125 126 9.673454 GTTGGAGAACGTAGTAATTTCAAAATT 57.327 29.630 6.04 6.04 45.00 1.82
126 127 8.842280 TGTTGGAGAACGTAGTAATTTCAAAAT 58.158 29.630 0.00 0.00 45.00 1.82
127 128 8.211116 TGTTGGAGAACGTAGTAATTTCAAAA 57.789 30.769 0.00 0.00 45.00 2.44
128 129 7.789273 TGTTGGAGAACGTAGTAATTTCAAA 57.211 32.000 0.00 0.00 45.00 2.69
129 130 7.789273 TTGTTGGAGAACGTAGTAATTTCAA 57.211 32.000 0.00 0.00 45.00 2.69
130 131 7.972832 ATTGTTGGAGAACGTAGTAATTTCA 57.027 32.000 0.00 0.00 45.00 2.69
131 132 8.114905 GCTATTGTTGGAGAACGTAGTAATTTC 58.885 37.037 0.00 0.00 45.00 2.17
132 133 7.065443 GGCTATTGTTGGAGAACGTAGTAATTT 59.935 37.037 0.00 0.00 45.00 1.82
133 134 6.537660 GGCTATTGTTGGAGAACGTAGTAATT 59.462 38.462 0.00 0.00 45.00 1.40
134 135 6.047231 GGCTATTGTTGGAGAACGTAGTAAT 58.953 40.000 0.00 0.00 45.00 1.89
135 136 5.413499 GGCTATTGTTGGAGAACGTAGTAA 58.587 41.667 0.00 0.00 45.00 2.24
136 137 4.142093 GGGCTATTGTTGGAGAACGTAGTA 60.142 45.833 0.00 0.00 45.00 1.82
138 139 3.118738 AGGGCTATTGTTGGAGAACGTAG 60.119 47.826 0.00 0.00 34.49 3.51
139 140 2.835764 AGGGCTATTGTTGGAGAACGTA 59.164 45.455 0.00 0.00 34.49 3.57
140 141 1.628846 AGGGCTATTGTTGGAGAACGT 59.371 47.619 0.00 0.00 34.49 3.99
141 142 2.009774 CAGGGCTATTGTTGGAGAACG 58.990 52.381 0.00 0.00 34.49 3.95
142 143 2.749621 CACAGGGCTATTGTTGGAGAAC 59.250 50.000 0.00 0.00 0.00 3.01
143 144 2.375174 ACACAGGGCTATTGTTGGAGAA 59.625 45.455 0.00 0.00 0.00 2.87
144 145 1.985159 ACACAGGGCTATTGTTGGAGA 59.015 47.619 0.00 0.00 0.00 3.71
145 146 2.489329 CAACACAGGGCTATTGTTGGAG 59.511 50.000 14.07 0.00 44.18 3.86
146 147 2.107378 TCAACACAGGGCTATTGTTGGA 59.893 45.455 18.72 8.55 46.66 3.53
147 148 2.228822 GTCAACACAGGGCTATTGTTGG 59.771 50.000 18.72 7.03 46.66 3.77
151 152 1.464608 CACGTCAACACAGGGCTATTG 59.535 52.381 0.00 0.00 0.00 1.90
159 160 2.823196 TTGCTTTCACGTCAACACAG 57.177 45.000 0.00 0.00 0.00 3.66
345 387 2.380941 CCATGCATGGTCAAGGAATCA 58.619 47.619 33.68 0.00 43.05 2.57
418 461 2.047274 CCACTTCCACCATCGCGT 60.047 61.111 5.77 0.00 0.00 6.01
439 482 2.031616 ACCGTCGTCGTCTCCTGA 59.968 61.111 0.71 0.00 35.01 3.86
473 516 1.345415 TGTCATTGAGCTCTCTGCACA 59.655 47.619 16.19 13.77 45.94 4.57
487 530 2.046411 TGCGTCGCCCATGTCATT 60.046 55.556 15.88 0.00 0.00 2.57
528 571 1.871772 GACAGCAATTGCAGCTCGT 59.128 52.632 30.89 18.68 45.16 4.18
551 610 3.036084 AAGTCGCCGCTCAACACG 61.036 61.111 0.00 0.00 0.00 4.49
603 662 2.786495 CGCCACTCGCATCCCTAGT 61.786 63.158 0.00 0.00 37.30 2.57
627 686 4.394078 TTCGTCGTCGAGGCACCG 62.394 66.667 10.02 3.06 46.81 4.94
690 823 1.261238 CCCTCCCTCTGATATCGCCC 61.261 65.000 0.00 0.00 0.00 6.13
701 834 3.878667 CGCCATTCCCCCTCCCTC 61.879 72.222 0.00 0.00 0.00 4.30
703 836 2.698776 GATTCGCCATTCCCCCTCCC 62.699 65.000 0.00 0.00 0.00 4.30
712 1165 3.317711 TGTGTTGTCTTTGATTCGCCATT 59.682 39.130 0.00 0.00 0.00 3.16
721 1174 2.474856 GCGTTCGTTGTGTTGTCTTTGA 60.475 45.455 0.00 0.00 0.00 2.69
732 1185 3.039588 ATTCCGCGCGTTCGTTGT 61.040 55.556 29.95 4.11 38.14 3.32
767 1220 2.291282 TGTTATTTTGGATGACCGGCCT 60.291 45.455 0.00 0.00 39.42 5.19
831 1980 3.259064 TGATTTCGGTTTGTCTCGGATC 58.741 45.455 0.00 0.00 0.00 3.36
835 1984 7.748683 TGAATTTAATGATTTCGGTTTGTCTCG 59.251 33.333 0.00 0.00 0.00 4.04
903 2053 2.493273 TTTTGATGCTCCCGGGTCCC 62.493 60.000 22.86 10.61 0.00 4.46
904 2054 1.001393 TTTTGATGCTCCCGGGTCC 60.001 57.895 22.86 13.35 0.00 4.46
905 2055 0.035439 TCTTTTGATGCTCCCGGGTC 60.035 55.000 22.86 11.53 0.00 4.46
906 2056 0.404040 TTCTTTTGATGCTCCCGGGT 59.596 50.000 22.86 0.00 0.00 5.28
907 2057 0.811281 GTTCTTTTGATGCTCCCGGG 59.189 55.000 16.85 16.85 0.00 5.73
932 2082 2.907042 GGGAGGAAGGTGAGAGAAGAAA 59.093 50.000 0.00 0.00 0.00 2.52
970 2120 2.840753 GGAGGTTGGAGTGGGCCAA 61.841 63.158 8.40 0.00 45.28 4.52
973 2123 2.366153 TTTGGGAGGTTGGAGTGGGC 62.366 60.000 0.00 0.00 0.00 5.36
974 2124 0.539669 GTTTGGGAGGTTGGAGTGGG 60.540 60.000 0.00 0.00 0.00 4.61
980 2130 1.908299 GCAGGGTTTGGGAGGTTGG 60.908 63.158 0.00 0.00 0.00 3.77
1049 2199 3.699894 CCTGGTCAGCGCTGGTCT 61.700 66.667 35.36 0.00 0.00 3.85
1218 2371 1.219664 CCCGTCGCTATGGTTGGAA 59.780 57.895 0.00 0.00 0.00 3.53
1337 2500 2.886124 GCTAGCCGAACCTCGCAC 60.886 66.667 2.29 0.00 38.82 5.34
1340 2503 1.012486 AAAACGCTAGCCGAACCTCG 61.012 55.000 9.66 0.00 41.02 4.63
1432 2595 2.736719 CGAACGATCAGGAGACAATGCT 60.737 50.000 0.00 0.00 0.00 3.79
1439 2602 1.248101 TGTGGCGAACGATCAGGAGA 61.248 55.000 0.00 0.00 0.00 3.71
1676 2839 6.983307 CACTTCAATTAATTTTGGTGGTGTCA 59.017 34.615 0.00 0.00 0.00 3.58
1678 2841 6.126911 ACCACTTCAATTAATTTTGGTGGTGT 60.127 34.615 28.82 16.62 43.97 4.16
1684 2847 7.063780 GCAGATCACCACTTCAATTAATTTTGG 59.936 37.037 0.00 5.78 0.00 3.28
1689 2852 6.094603 GTCAGCAGATCACCACTTCAATTAAT 59.905 38.462 0.00 0.00 0.00 1.40
1734 2897 9.593134 AAAAGTTAAAGACAACAATAATGCACA 57.407 25.926 0.00 0.00 0.00 4.57
1755 2918 9.521503 GTTTTCTGCTTTCTGAGAATAAAAAGT 57.478 29.630 0.00 0.00 32.56 2.66
1769 2933 6.849588 AACCAATTGATGTTTTCTGCTTTC 57.150 33.333 7.12 0.00 0.00 2.62
1788 2952 9.981114 GAGAAGAAGAAAAATGGAATTAAACCA 57.019 29.630 7.11 7.11 33.67 3.67
1796 2960 7.670979 TGATCCATGAGAAGAAGAAAAATGGAA 59.329 33.333 5.64 0.00 43.79 3.53
1806 2970 5.531659 CCCAGAAATGATCCATGAGAAGAAG 59.468 44.000 0.00 0.00 0.00 2.85
1827 2991 7.293828 TGTGGAAATAAGATATATTGCACCCA 58.706 34.615 6.55 0.00 41.59 4.51
2205 3369 6.325596 AGTTCTAAACGACGAGGGTATTTAC 58.674 40.000 0.00 0.00 36.23 2.01
2288 3452 2.042686 ATGGCTTTGCTGAGCGATAA 57.957 45.000 0.00 0.00 43.62 1.75
2316 3480 6.938507 TGAGCAAATTTATCAATTTCAGGCT 58.061 32.000 7.68 7.68 40.09 4.58
2419 3583 6.899393 TTCTGTCCAGATAAAACAGCAAAT 57.101 33.333 0.00 0.00 40.15 2.32
2508 3673 3.299503 ACATGAAAGGAGCAAGGTGTTT 58.700 40.909 0.00 0.00 0.00 2.83
2637 3804 5.221106 GCAACATATGTACAGTGAATGGCAT 60.221 40.000 9.21 0.00 34.45 4.40
2642 3809 7.315142 CAAAAGGCAACATATGTACAGTGAAT 58.685 34.615 9.21 4.02 41.41 2.57
2721 3888 4.454948 TGAACAGGTTCACCAGCG 57.545 55.556 10.63 0.00 43.90 5.18
2841 4008 3.951037 TCAAACTGTTTAGCTTTGCCAGA 59.049 39.130 5.31 0.00 31.17 3.86
2866 4033 1.340991 ACGCTCCCACTTTATTGGCAT 60.341 47.619 0.00 0.00 35.00 4.40
3084 4252 3.619233 AAATACACGCACAGTTGTTCC 57.381 42.857 0.00 0.00 0.00 3.62
3353 4525 7.328277 TGCTAACGAAATAAGTATTTGGCAT 57.672 32.000 1.05 0.00 36.13 4.40
3363 4535 9.907576 CTGAAGAGTTAATGCTAACGAAATAAG 57.092 33.333 0.00 0.00 42.02 1.73
3386 4558 5.483937 TCTCAGCTAATTGACTAAACCCTGA 59.516 40.000 0.00 0.00 0.00 3.86
3508 4680 1.139853 GCCATCTCCAAGAAGGACGAT 59.860 52.381 2.53 0.00 43.07 3.73
3511 4683 1.472376 CGAGCCATCTCCAAGAAGGAC 60.472 57.143 2.53 0.00 43.07 3.85
3667 4839 9.323985 GAAGATAAGCAGAGATTAACAACATCT 57.676 33.333 0.00 0.00 33.42 2.90
3722 4894 4.160439 TGATCGTACTTCCTCAAGCTCAAT 59.840 41.667 0.00 0.00 32.09 2.57
3760 4932 4.681025 AGTTGATGTTATGTTTTTGCTGCG 59.319 37.500 0.00 0.00 0.00 5.18
3796 4968 5.977129 CGGATAGGGAAAAATACATTGTTGC 59.023 40.000 0.00 0.00 0.00 4.17
3820 4992 2.945668 GGTATGTTGAGGAGCACATTCC 59.054 50.000 0.00 0.00 37.52 3.01
3828 5000 6.180472 AGTAAAATGTGGGTATGTTGAGGAG 58.820 40.000 0.00 0.00 0.00 3.69
3954 5131 3.049344 ACCATCCAGGAGTAGGAATTCC 58.951 50.000 17.31 17.31 41.22 3.01
3964 5141 7.125792 AGTGTACTTAATTACCATCCAGGAG 57.874 40.000 0.00 0.00 41.22 3.69
4059 5239 3.950087 TGATATGTGCTTGATTCGTGC 57.050 42.857 0.00 0.00 0.00 5.34
4067 5247 8.920665 GCTAGTAGAGTAATTGATATGTGCTTG 58.079 37.037 0.00 0.00 0.00 4.01
4141 5321 5.163280 CCCCATTCCAAAATGTCTGCAATAT 60.163 40.000 0.00 0.00 40.63 1.28
4163 5344 8.203681 ACTACATAAATAACCAGGATAGTCCC 57.796 38.462 0.00 0.00 37.19 4.46
4211 5395 3.829026 GGCCAAATTCCTCAAAGAGAACT 59.171 43.478 0.00 0.00 0.00 3.01
4237 5421 8.629158 TCACAAGTATTAACTGAAAAGCACATT 58.371 29.630 0.00 0.00 35.62 2.71
4253 5437 5.653769 AGCAAAGCATATGGTCACAAGTATT 59.346 36.000 8.07 0.00 0.00 1.89
4287 5472 7.454260 AAGGAAATCTTATGTGAAGTTCCAC 57.546 36.000 0.00 0.00 37.00 4.02
4346 5531 3.752665 TGTACGGAACTTATTTGGCCAA 58.247 40.909 16.05 16.05 0.00 4.52
4361 5546 7.453838 GTTGAATAAGAAGCTAAGTTGTACGG 58.546 38.462 0.00 0.00 0.00 4.02
4399 5585 6.106673 TGAGTTATTTGTAGAGCTACCTTGC 58.893 40.000 5.29 0.00 35.26 4.01
4401 5587 7.819900 CACTTGAGTTATTTGTAGAGCTACCTT 59.180 37.037 5.29 0.00 35.26 3.50
4404 5590 8.436200 CAACACTTGAGTTATTTGTAGAGCTAC 58.564 37.037 0.74 0.74 36.63 3.58
4431 5617 6.698008 TTCCATGAACCTATTTGCATACAG 57.302 37.500 0.00 0.00 0.00 2.74
4537 5723 4.037446 GCTCATGGCCGGTCATTTAAATTA 59.963 41.667 21.50 0.00 34.27 1.40
4577 5764 8.414003 GGAAGGTTTGATTAAGAGTGTCTTTTT 58.586 33.333 0.00 0.00 37.89 1.94
4578 5765 7.559897 TGGAAGGTTTGATTAAGAGTGTCTTTT 59.440 33.333 0.00 0.00 37.89 2.27
4579 5766 7.060421 TGGAAGGTTTGATTAAGAGTGTCTTT 58.940 34.615 0.00 0.00 37.89 2.52
4580 5767 6.601332 TGGAAGGTTTGATTAAGAGTGTCTT 58.399 36.000 0.00 0.00 40.35 3.01
4581 5768 6.187727 TGGAAGGTTTGATTAAGAGTGTCT 57.812 37.500 0.00 0.00 0.00 3.41
4582 5769 7.201652 GCTATGGAAGGTTTGATTAAGAGTGTC 60.202 40.741 0.00 0.00 0.00 3.67
4583 5770 6.599638 GCTATGGAAGGTTTGATTAAGAGTGT 59.400 38.462 0.00 0.00 0.00 3.55
4584 5771 6.599244 TGCTATGGAAGGTTTGATTAAGAGTG 59.401 38.462 0.00 0.00 0.00 3.51
4585 5772 6.599638 GTGCTATGGAAGGTTTGATTAAGAGT 59.400 38.462 0.00 0.00 0.00 3.24
4586 5773 6.599244 TGTGCTATGGAAGGTTTGATTAAGAG 59.401 38.462 0.00 0.00 0.00 2.85
4587 5774 6.374333 GTGTGCTATGGAAGGTTTGATTAAGA 59.626 38.462 0.00 0.00 0.00 2.10
4588 5775 6.375455 AGTGTGCTATGGAAGGTTTGATTAAG 59.625 38.462 0.00 0.00 0.00 1.85
4589 5776 6.245408 AGTGTGCTATGGAAGGTTTGATTAA 58.755 36.000 0.00 0.00 0.00 1.40
4590 5777 5.815581 AGTGTGCTATGGAAGGTTTGATTA 58.184 37.500 0.00 0.00 0.00 1.75
4591 5778 4.666512 AGTGTGCTATGGAAGGTTTGATT 58.333 39.130 0.00 0.00 0.00 2.57
4592 5779 4.307032 AGTGTGCTATGGAAGGTTTGAT 57.693 40.909 0.00 0.00 0.00 2.57
4593 5780 3.788227 AGTGTGCTATGGAAGGTTTGA 57.212 42.857 0.00 0.00 0.00 2.69
4594 5781 3.375299 GCTAGTGTGCTATGGAAGGTTTG 59.625 47.826 0.00 0.00 0.00 2.93
4595 5782 3.009033 TGCTAGTGTGCTATGGAAGGTTT 59.991 43.478 0.00 0.00 0.00 3.27
4596 5783 2.571653 TGCTAGTGTGCTATGGAAGGTT 59.428 45.455 0.00 0.00 0.00 3.50
4597 5784 2.187958 TGCTAGTGTGCTATGGAAGGT 58.812 47.619 0.00 0.00 0.00 3.50
4598 5785 2.988010 TGCTAGTGTGCTATGGAAGG 57.012 50.000 0.00 0.00 0.00 3.46
4599 5786 3.993081 GCTATGCTAGTGTGCTATGGAAG 59.007 47.826 0.00 0.00 0.00 3.46
4600 5787 3.244215 GGCTATGCTAGTGTGCTATGGAA 60.244 47.826 0.00 0.00 0.00 3.53
4601 5788 2.300152 GGCTATGCTAGTGTGCTATGGA 59.700 50.000 0.00 0.00 0.00 3.41
4602 5789 2.301296 AGGCTATGCTAGTGTGCTATGG 59.699 50.000 0.00 0.00 0.00 2.74
4603 5790 3.674528 AGGCTATGCTAGTGTGCTATG 57.325 47.619 0.00 0.00 0.00 2.23
4604 5791 4.219507 CACTAGGCTATGCTAGTGTGCTAT 59.780 45.833 15.74 0.00 44.60 2.97
4605 5792 3.570125 CACTAGGCTATGCTAGTGTGCTA 59.430 47.826 15.74 0.00 44.60 3.49
4606 5793 2.363680 CACTAGGCTATGCTAGTGTGCT 59.636 50.000 15.74 0.00 44.60 4.40
4607 5794 2.748605 CACTAGGCTATGCTAGTGTGC 58.251 52.381 15.74 0.00 44.60 4.57
4611 5798 4.119556 TCCATCACTAGGCTATGCTAGT 57.880 45.455 0.00 0.00 36.90 2.57
4612 5799 5.474578 TTTCCATCACTAGGCTATGCTAG 57.525 43.478 0.00 0.00 0.00 3.42
4613 5800 4.284490 CCTTTCCATCACTAGGCTATGCTA 59.716 45.833 0.00 0.00 0.00 3.49
4614 5801 3.072184 CCTTTCCATCACTAGGCTATGCT 59.928 47.826 0.00 0.00 0.00 3.79
4615 5802 3.406764 CCTTTCCATCACTAGGCTATGC 58.593 50.000 0.00 0.00 0.00 3.14
4616 5803 3.244700 CCCCTTTCCATCACTAGGCTATG 60.245 52.174 0.00 0.00 0.00 2.23
4617 5804 2.982488 CCCCTTTCCATCACTAGGCTAT 59.018 50.000 0.00 0.00 0.00 2.97
4618 5805 2.408565 CCCCTTTCCATCACTAGGCTA 58.591 52.381 0.00 0.00 0.00 3.93
4619 5806 1.216990 CCCCTTTCCATCACTAGGCT 58.783 55.000 0.00 0.00 0.00 4.58
4620 5807 0.466372 GCCCCTTTCCATCACTAGGC 60.466 60.000 0.00 0.00 0.00 3.93
4621 5808 1.133976 CAGCCCCTTTCCATCACTAGG 60.134 57.143 0.00 0.00 0.00 3.02
4622 5809 1.839994 TCAGCCCCTTTCCATCACTAG 59.160 52.381 0.00 0.00 0.00 2.57
4623 5810 1.965414 TCAGCCCCTTTCCATCACTA 58.035 50.000 0.00 0.00 0.00 2.74
4624 5811 1.064166 CATCAGCCCCTTTCCATCACT 60.064 52.381 0.00 0.00 0.00 3.41
4625 5812 1.064463 TCATCAGCCCCTTTCCATCAC 60.064 52.381 0.00 0.00 0.00 3.06
4626 5813 1.064463 GTCATCAGCCCCTTTCCATCA 60.064 52.381 0.00 0.00 0.00 3.07
4627 5814 1.685148 GTCATCAGCCCCTTTCCATC 58.315 55.000 0.00 0.00 0.00 3.51
4628 5815 0.259938 GGTCATCAGCCCCTTTCCAT 59.740 55.000 0.00 0.00 0.00 3.41
4629 5816 0.846427 AGGTCATCAGCCCCTTTCCA 60.846 55.000 0.00 0.00 0.00 3.53
4630 5817 0.106967 GAGGTCATCAGCCCCTTTCC 60.107 60.000 0.00 0.00 0.00 3.13
4631 5818 0.106967 GGAGGTCATCAGCCCCTTTC 60.107 60.000 0.00 0.00 0.00 2.62
4632 5819 1.575447 GGGAGGTCATCAGCCCCTTT 61.575 60.000 0.00 0.00 34.39 3.11
4633 5820 2.003548 GGGAGGTCATCAGCCCCTT 61.004 63.158 0.00 0.00 34.39 3.95
4634 5821 2.367512 GGGAGGTCATCAGCCCCT 60.368 66.667 0.00 0.00 34.39 4.79
4635 5822 2.692368 TGGGAGGTCATCAGCCCC 60.692 66.667 0.00 0.00 39.93 5.80
4636 5823 2.592308 GTGGGAGGTCATCAGCCC 59.408 66.667 0.00 0.00 41.08 5.19
4637 5824 1.852157 TTGGTGGGAGGTCATCAGCC 61.852 60.000 0.00 0.00 0.00 4.85
4638 5825 0.678048 GTTGGTGGGAGGTCATCAGC 60.678 60.000 0.00 0.00 0.00 4.26
4639 5826 0.035056 GGTTGGTGGGAGGTCATCAG 60.035 60.000 0.00 0.00 0.00 2.90
4640 5827 1.497309 GGGTTGGTGGGAGGTCATCA 61.497 60.000 0.00 0.00 0.00 3.07
4641 5828 1.303282 GGGTTGGTGGGAGGTCATC 59.697 63.158 0.00 0.00 0.00 2.92
4642 5829 1.465188 TGGGTTGGTGGGAGGTCAT 60.465 57.895 0.00 0.00 0.00 3.06
4643 5830 2.039298 TGGGTTGGTGGGAGGTCA 60.039 61.111 0.00 0.00 0.00 4.02
4644 5831 2.757077 CTGGGTTGGTGGGAGGTC 59.243 66.667 0.00 0.00 0.00 3.85
4645 5832 2.730196 ATCCTGGGTTGGTGGGAGGT 62.730 60.000 0.00 0.00 0.00 3.85
4646 5833 1.926426 GATCCTGGGTTGGTGGGAGG 61.926 65.000 0.00 0.00 0.00 4.30
4647 5834 1.207488 TGATCCTGGGTTGGTGGGAG 61.207 60.000 0.00 0.00 0.00 4.30
4648 5835 0.774096 TTGATCCTGGGTTGGTGGGA 60.774 55.000 0.00 0.00 0.00 4.37
4649 5836 0.323725 CTTGATCCTGGGTTGGTGGG 60.324 60.000 0.00 0.00 0.00 4.61
4650 5837 0.698238 TCTTGATCCTGGGTTGGTGG 59.302 55.000 0.00 0.00 0.00 4.61
4651 5838 1.073763 TGTCTTGATCCTGGGTTGGTG 59.926 52.381 0.00 0.00 0.00 4.17
4652 5839 1.444933 TGTCTTGATCCTGGGTTGGT 58.555 50.000 0.00 0.00 0.00 3.67
4653 5840 2.372264 CATGTCTTGATCCTGGGTTGG 58.628 52.381 0.00 0.00 0.00 3.77
4654 5841 2.291153 ACCATGTCTTGATCCTGGGTTG 60.291 50.000 0.00 0.00 0.00 3.77
4655 5842 1.995542 ACCATGTCTTGATCCTGGGTT 59.004 47.619 0.00 0.00 0.00 4.11
4656 5843 1.673767 ACCATGTCTTGATCCTGGGT 58.326 50.000 0.00 0.00 0.00 4.51
4657 5844 2.774234 ACTACCATGTCTTGATCCTGGG 59.226 50.000 0.00 0.00 0.00 4.45
4658 5845 4.194640 CAACTACCATGTCTTGATCCTGG 58.805 47.826 0.00 0.00 0.00 4.45
4659 5846 3.624861 GCAACTACCATGTCTTGATCCTG 59.375 47.826 0.00 0.00 0.00 3.86
4660 5847 3.264193 TGCAACTACCATGTCTTGATCCT 59.736 43.478 0.00 0.00 0.00 3.24
4661 5848 3.609853 TGCAACTACCATGTCTTGATCC 58.390 45.455 0.00 0.00 0.00 3.36
4662 5849 5.824904 ATTGCAACTACCATGTCTTGATC 57.175 39.130 0.00 0.00 0.00 2.92
4663 5850 6.392354 CAAATTGCAACTACCATGTCTTGAT 58.608 36.000 0.00 0.00 0.00 2.57
4664 5851 5.278907 CCAAATTGCAACTACCATGTCTTGA 60.279 40.000 0.00 0.00 0.00 3.02
4665 5852 4.925054 CCAAATTGCAACTACCATGTCTTG 59.075 41.667 0.00 0.00 0.00 3.02
4666 5853 4.021192 CCCAAATTGCAACTACCATGTCTT 60.021 41.667 0.00 0.00 0.00 3.01
4667 5854 3.511146 CCCAAATTGCAACTACCATGTCT 59.489 43.478 0.00 0.00 0.00 3.41
4668 5855 3.258123 ACCCAAATTGCAACTACCATGTC 59.742 43.478 0.00 0.00 0.00 3.06
4669 5856 3.238597 ACCCAAATTGCAACTACCATGT 58.761 40.909 0.00 0.00 0.00 3.21
4670 5857 3.511146 AGACCCAAATTGCAACTACCATG 59.489 43.478 0.00 0.00 0.00 3.66
4671 5858 3.511146 CAGACCCAAATTGCAACTACCAT 59.489 43.478 0.00 0.00 0.00 3.55
4672 5859 2.890311 CAGACCCAAATTGCAACTACCA 59.110 45.455 0.00 0.00 0.00 3.25
4673 5860 2.890945 ACAGACCCAAATTGCAACTACC 59.109 45.455 0.00 0.00 0.00 3.18
4674 5861 4.298332 CAACAGACCCAAATTGCAACTAC 58.702 43.478 0.00 0.00 0.00 2.73
4675 5862 3.243704 GCAACAGACCCAAATTGCAACTA 60.244 43.478 0.00 0.00 45.38 2.24
4676 5863 2.483538 GCAACAGACCCAAATTGCAACT 60.484 45.455 0.00 0.00 45.38 3.16
4677 5864 1.866601 GCAACAGACCCAAATTGCAAC 59.133 47.619 0.00 0.00 45.38 4.17
4678 5865 2.237393 GCAACAGACCCAAATTGCAA 57.763 45.000 0.00 0.00 45.38 4.08
4679 5866 3.984838 GCAACAGACCCAAATTGCA 57.015 47.368 3.06 0.00 45.38 4.08
4680 5867 1.501169 GTGCAACAGACCCAAATTGC 58.499 50.000 0.00 0.94 46.08 3.56
4681 5868 1.411977 TGGTGCAACAGACCCAAATTG 59.588 47.619 0.00 0.00 39.98 2.32
4682 5869 1.786937 TGGTGCAACAGACCCAAATT 58.213 45.000 0.00 0.00 39.98 1.82
4683 5870 1.786937 TTGGTGCAACAGACCCAAAT 58.213 45.000 3.79 0.00 39.98 2.32
4684 5871 1.686052 GATTGGTGCAACAGACCCAAA 59.314 47.619 3.79 0.00 40.16 3.28
4685 5872 1.327303 GATTGGTGCAACAGACCCAA 58.673 50.000 3.79 5.51 39.98 4.12
4686 5873 0.184692 TGATTGGTGCAACAGACCCA 59.815 50.000 3.79 0.00 39.98 4.51
4687 5874 1.000274 GTTGATTGGTGCAACAGACCC 60.000 52.381 3.79 0.00 43.77 4.46
4688 5875 2.422276 GTTGATTGGTGCAACAGACC 57.578 50.000 3.79 0.00 43.77 3.85
4693 5880 4.931002 AGCATAATTGTTGATTGGTGCAAC 59.069 37.500 0.00 0.00 44.40 4.17
4694 5881 4.930405 CAGCATAATTGTTGATTGGTGCAA 59.070 37.500 0.00 0.00 40.34 4.08
4695 5882 4.021280 ACAGCATAATTGTTGATTGGTGCA 60.021 37.500 0.00 0.00 40.34 4.57
4696 5883 4.497300 ACAGCATAATTGTTGATTGGTGC 58.503 39.130 0.00 0.00 39.23 5.01
4697 5884 6.267817 CCTACAGCATAATTGTTGATTGGTG 58.732 40.000 0.00 0.00 37.49 4.17
4698 5885 5.360714 CCCTACAGCATAATTGTTGATTGGT 59.639 40.000 0.00 0.00 37.49 3.67
4699 5886 5.221303 CCCCTACAGCATAATTGTTGATTGG 60.221 44.000 0.00 0.00 37.49 3.16
4700 5887 5.737063 GCCCCTACAGCATAATTGTTGATTG 60.737 44.000 0.00 0.00 37.49 2.67
4701 5888 4.342092 GCCCCTACAGCATAATTGTTGATT 59.658 41.667 0.00 0.00 37.49 2.57
4702 5889 3.891366 GCCCCTACAGCATAATTGTTGAT 59.109 43.478 0.00 0.00 37.49 2.57
4703 5890 3.287222 GCCCCTACAGCATAATTGTTGA 58.713 45.455 0.00 0.00 37.49 3.18
4704 5891 2.362077 GGCCCCTACAGCATAATTGTTG 59.638 50.000 0.00 0.00 39.72 3.33
4705 5892 2.244769 AGGCCCCTACAGCATAATTGTT 59.755 45.455 0.00 0.00 0.00 2.83
4706 5893 1.852965 AGGCCCCTACAGCATAATTGT 59.147 47.619 0.00 0.00 0.00 2.71
4707 5894 2.508526 GAGGCCCCTACAGCATAATTG 58.491 52.381 0.00 0.00 0.00 2.32
4708 5895 1.425448 GGAGGCCCCTACAGCATAATT 59.575 52.381 0.00 0.00 0.00 1.40
4709 5896 1.068121 GGAGGCCCCTACAGCATAAT 58.932 55.000 0.00 0.00 0.00 1.28
4710 5897 0.030092 AGGAGGCCCCTACAGCATAA 60.030 55.000 10.79 0.00 45.48 1.90
4711 5898 1.632164 AGGAGGCCCCTACAGCATA 59.368 57.895 10.79 0.00 45.48 3.14
4712 5899 2.374342 AGGAGGCCCCTACAGCAT 59.626 61.111 10.79 0.00 45.48 3.79
4720 5907 0.919710 ATGACTGTAAAGGAGGCCCC 59.080 55.000 0.00 0.00 0.00 5.80
4721 5908 2.239907 AGAATGACTGTAAAGGAGGCCC 59.760 50.000 0.00 0.00 0.00 5.80
4722 5909 3.636153 AGAATGACTGTAAAGGAGGCC 57.364 47.619 0.00 0.00 0.00 5.19
4723 5910 8.732746 TTTTATAGAATGACTGTAAAGGAGGC 57.267 34.615 0.00 0.00 41.00 4.70
4748 5935 9.990360 AACGTAATTATGGAAGGTTTGATTTTT 57.010 25.926 9.46 0.00 0.00 1.94
4749 5936 9.418045 CAACGTAATTATGGAAGGTTTGATTTT 57.582 29.630 9.46 0.00 0.00 1.82
4750 5937 8.980143 CAACGTAATTATGGAAGGTTTGATTT 57.020 30.769 9.46 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.