Multiple sequence alignment - TraesCS4A01G034200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G034200 chr4A 100.000 2898 0 0 1 2898 26325248 26322351 0.000000e+00 5352.0
1 TraesCS4A01G034200 chr4A 81.470 1333 177 40 589 1898 24935169 24936454 0.000000e+00 1029.0
2 TraesCS4A01G034200 chr4A 79.943 1401 194 48 539 1898 24919920 24918566 0.000000e+00 950.0
3 TraesCS4A01G034200 chr4D 92.888 2784 123 31 1 2745 441254904 441257651 0.000000e+00 3975.0
4 TraesCS4A01G034200 chr4D 81.770 1333 179 38 588 1898 442223426 442222136 0.000000e+00 1057.0
5 TraesCS4A01G034200 chr4D 80.674 1454 197 49 478 1898 442395559 442396961 0.000000e+00 1051.0
6 TraesCS4A01G034200 chr4D 77.414 1895 265 92 74 1898 442216267 442214466 0.000000e+00 977.0
7 TraesCS4A01G034200 chr4D 80.595 1345 174 43 588 1898 442249226 442247935 0.000000e+00 957.0
8 TraesCS4A01G034200 chr4B 92.733 2697 140 26 1 2669 547308485 547311153 0.000000e+00 3843.0
9 TraesCS4A01G034200 chr4B 80.219 1461 205 48 478 1897 550502283 550503700 0.000000e+00 1020.0
10 TraesCS4A01G034200 chr5D 84.895 1483 135 43 630 2071 544798728 544800162 0.000000e+00 1415.0
11 TraesCS4A01G034200 chr5D 78.806 854 125 30 372 1181 544816184 544817025 9.200000e-145 523.0
12 TraesCS4A01G034200 chr1A 84.311 1466 166 37 631 2069 569377696 569376268 0.000000e+00 1375.0
13 TraesCS4A01G034200 chr5B 90.231 778 67 8 1195 1966 687326357 687327131 0.000000e+00 1007.0
14 TraesCS4A01G034200 chr5B 78.186 871 123 44 372 1211 687325366 687326200 7.210000e-136 494.0
15 TraesCS4A01G034200 chr5B 79.741 617 88 24 602 1201 687259232 687259828 2.080000e-111 412.0
16 TraesCS4A01G034200 chr5B 78.558 527 76 19 689 1193 687342057 687342568 2.170000e-81 313.0
17 TraesCS4A01G034200 chr5B 81.905 315 34 14 256 555 687258816 687259122 8.020000e-61 244.0
18 TraesCS4A01G034200 chr5B 79.205 327 47 14 248 560 687339798 687340117 1.050000e-49 207.0
19 TraesCS4A01G034200 chr7B 92.771 83 6 0 2816 2898 156496106 156496188 1.410000e-23 121.0
20 TraesCS4A01G034200 chr7B 91.429 70 6 0 2749 2818 467977417 467977348 2.380000e-16 97.1
21 TraesCS4A01G034200 chr1B 92.500 80 6 0 2819 2898 1492160 1492239 6.560000e-22 115.0
22 TraesCS4A01G034200 chr1D 93.151 73 5 0 2746 2818 463461887 463461959 1.100000e-19 108.0
23 TraesCS4A01G034200 chr7A 91.892 74 5 1 2745 2818 722605554 722605626 5.110000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G034200 chr4A 26322351 26325248 2897 True 5352.0 5352 100.0000 1 2898 1 chr4A.!!$R2 2897
1 TraesCS4A01G034200 chr4A 24935169 24936454 1285 False 1029.0 1029 81.4700 589 1898 1 chr4A.!!$F1 1309
2 TraesCS4A01G034200 chr4A 24918566 24919920 1354 True 950.0 950 79.9430 539 1898 1 chr4A.!!$R1 1359
3 TraesCS4A01G034200 chr4D 441254904 441257651 2747 False 3975.0 3975 92.8880 1 2745 1 chr4D.!!$F1 2744
4 TraesCS4A01G034200 chr4D 442222136 442223426 1290 True 1057.0 1057 81.7700 588 1898 1 chr4D.!!$R2 1310
5 TraesCS4A01G034200 chr4D 442395559 442396961 1402 False 1051.0 1051 80.6740 478 1898 1 chr4D.!!$F2 1420
6 TraesCS4A01G034200 chr4D 442214466 442216267 1801 True 977.0 977 77.4140 74 1898 1 chr4D.!!$R1 1824
7 TraesCS4A01G034200 chr4D 442247935 442249226 1291 True 957.0 957 80.5950 588 1898 1 chr4D.!!$R3 1310
8 TraesCS4A01G034200 chr4B 547308485 547311153 2668 False 3843.0 3843 92.7330 1 2669 1 chr4B.!!$F1 2668
9 TraesCS4A01G034200 chr4B 550502283 550503700 1417 False 1020.0 1020 80.2190 478 1897 1 chr4B.!!$F2 1419
10 TraesCS4A01G034200 chr5D 544798728 544800162 1434 False 1415.0 1415 84.8950 630 2071 1 chr5D.!!$F1 1441
11 TraesCS4A01G034200 chr5D 544816184 544817025 841 False 523.0 523 78.8060 372 1181 1 chr5D.!!$F2 809
12 TraesCS4A01G034200 chr1A 569376268 569377696 1428 True 1375.0 1375 84.3110 631 2069 1 chr1A.!!$R1 1438
13 TraesCS4A01G034200 chr5B 687325366 687327131 1765 False 750.5 1007 84.2085 372 1966 2 chr5B.!!$F2 1594
14 TraesCS4A01G034200 chr5B 687258816 687259828 1012 False 328.0 412 80.8230 256 1201 2 chr5B.!!$F1 945
15 TraesCS4A01G034200 chr5B 687339798 687342568 2770 False 260.0 313 78.8815 248 1193 2 chr5B.!!$F3 945

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 618 0.030638 ACATTTGTGCACGCTGAACC 59.969 50.0 13.13 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2504 4771 0.036732 TGAAGAAGCGCAACTCCCAT 59.963 50.0 11.47 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.308766 CCAAACAGCATAACTCAAAAGCATAC 59.691 38.462 0.00 0.00 0.00 2.39
154 155 4.158025 AGTCGTCGTTTGACCTCAGATTAT 59.842 41.667 0.00 0.00 42.37 1.28
155 156 5.356190 AGTCGTCGTTTGACCTCAGATTATA 59.644 40.000 0.00 0.00 42.37 0.98
188 198 3.282021 ACTGGATGCATATTGTGTGACC 58.718 45.455 0.00 0.00 0.00 4.02
419 447 0.457035 TGTACGGTCCGAATGTAGGC 59.543 55.000 20.51 0.00 0.00 3.93
445 473 2.774687 AGAAATTGGAACGTACGGCTT 58.225 42.857 21.06 5.41 0.00 4.35
547 592 4.693095 CAGTTCAAAAGTAGAAGCCCTCTC 59.307 45.833 0.00 0.00 35.41 3.20
573 618 0.030638 ACATTTGTGCACGCTGAACC 59.969 50.000 13.13 0.00 0.00 3.62
580 625 1.658409 GCACGCTGAACCAAAGCAC 60.658 57.895 0.00 0.00 40.86 4.40
584 629 1.360192 GCTGAACCAAAGCACGCTT 59.640 52.632 0.00 0.00 40.52 4.68
843 2792 3.845992 TCATTCTTCTCCATCTGAACCCA 59.154 43.478 0.00 0.00 0.00 4.51
898 2869 6.668645 ACATCCTATTTAAGCACCACCATTA 58.331 36.000 0.00 0.00 0.00 1.90
901 2872 6.303839 TCCTATTTAAGCACCACCATTATCC 58.696 40.000 0.00 0.00 0.00 2.59
917 2889 5.251468 CCATTATCCCATCATTCCTCACCTA 59.749 44.000 0.00 0.00 0.00 3.08
919 2891 2.039418 TCCCATCATTCCTCACCTACG 58.961 52.381 0.00 0.00 0.00 3.51
932 2906 1.203994 CACCTACGAACCCACTCGATT 59.796 52.381 0.00 0.00 41.44 3.34
937 2911 0.744414 CGAACCCACTCGATTGCCAT 60.744 55.000 0.00 0.00 41.44 4.40
953 2927 3.470709 TGCCATAACATCTAGCAAGCTC 58.529 45.455 0.00 0.00 0.00 4.09
963 2937 2.783828 TAGCAAGCTCGCTAGACATC 57.216 50.000 1.15 0.00 43.56 3.06
964 2938 0.103937 AGCAAGCTCGCTAGACATCC 59.896 55.000 0.00 0.00 41.55 3.51
977 2971 0.316841 GACATCCGATCTCTCCCTGC 59.683 60.000 0.00 0.00 0.00 4.85
1357 3593 0.736053 TGTTCAACAACGGCTTGTCC 59.264 50.000 0.00 0.00 39.88 4.02
1624 3860 2.267351 TGGCCTGCGTTTCACCATG 61.267 57.895 3.32 0.00 0.00 3.66
1651 3887 3.367087 GCTTCAACTACTTCGAGCTGGTA 60.367 47.826 0.00 0.00 0.00 3.25
1876 4112 0.178973 TCGGACAGACCTTCTCCACA 60.179 55.000 0.00 0.00 36.31 4.17
1909 4149 9.171701 CAGTTCGACTACTAGCTATAACATTTC 57.828 37.037 0.00 0.00 0.00 2.17
1961 4209 0.322366 TTCAGGGCGAACATGCATGA 60.322 50.000 32.75 5.11 36.28 3.07
2051 4299 2.454055 GCAGCGGTAGATTTGAATTGC 58.546 47.619 0.00 0.00 0.00 3.56
2054 4302 4.675510 CAGCGGTAGATTTGAATTGCAAT 58.324 39.130 5.99 5.99 36.15 3.56
2130 4388 1.872773 GATCCCCACTCTGTCTCCTT 58.127 55.000 0.00 0.00 0.00 3.36
2167 4425 9.371136 AGTATATATGCATGCATGTGTAACTAC 57.629 33.333 37.43 24.08 38.04 2.73
2397 4664 0.671796 TGCTCGAACGGAGAAGACAA 59.328 50.000 0.00 0.00 46.23 3.18
2462 4729 1.269166 CTGGTGATTGTAGCGACGAC 58.731 55.000 0.00 0.00 0.00 4.34
2477 4744 3.570576 CGACGACGTTTACGATGATTTG 58.429 45.455 9.53 0.00 43.02 2.32
2490 4757 3.947196 CGATGATTTGGATTGAGGGTTGA 59.053 43.478 0.00 0.00 0.00 3.18
2504 4771 5.330233 TGAGGGTTGAGACAACTATACAGA 58.670 41.667 13.05 0.00 0.00 3.41
2506 4773 6.127338 TGAGGGTTGAGACAACTATACAGATG 60.127 42.308 13.05 0.00 0.00 2.90
2509 4776 5.128827 GGTTGAGACAACTATACAGATGGGA 59.871 44.000 13.05 0.00 0.00 4.37
2516 4783 2.224066 ACTATACAGATGGGAGTTGCGC 60.224 50.000 0.00 0.00 0.00 6.09
2542 4809 2.740981 TCAAGTTCTACGAGGAGACGAC 59.259 50.000 0.00 0.00 37.03 4.34
2567 4834 0.466124 GACATGGACTAGTGGAGGGC 59.534 60.000 0.00 0.00 0.00 5.19
2588 4864 4.377839 CCTCTCGTGGCTACCATATATG 57.622 50.000 5.68 5.68 35.28 1.78
2639 4915 4.009370 AGCCCTACAAGTGAAAAGAGTC 57.991 45.455 0.00 0.00 0.00 3.36
2653 4929 7.877612 AGTGAAAAGAGTCAAATGGTTTTGTTT 59.122 29.630 0.00 0.00 42.37 2.83
2725 5001 7.206981 ACTAATCTAAATTGGGCATCAATCG 57.793 36.000 5.22 0.00 44.68 3.34
2731 5007 7.202526 TCTAAATTGGGCATCAATCGAAATTC 58.797 34.615 5.22 0.00 44.68 2.17
2732 5008 3.799281 TTGGGCATCAATCGAAATTCC 57.201 42.857 0.00 0.00 0.00 3.01
2745 5021 1.743394 GAAATTCCGCTCCGTTGGATT 59.257 47.619 0.00 0.00 33.42 3.01
2746 5022 1.834188 AATTCCGCTCCGTTGGATTT 58.166 45.000 0.00 0.00 33.42 2.17
2747 5023 1.379527 ATTCCGCTCCGTTGGATTTC 58.620 50.000 0.00 0.00 33.42 2.17
2748 5024 0.323629 TTCCGCTCCGTTGGATTTCT 59.676 50.000 0.00 0.00 33.42 2.52
2749 5025 0.391130 TCCGCTCCGTTGGATTTCTG 60.391 55.000 0.00 0.00 0.00 3.02
2750 5026 0.391130 CCGCTCCGTTGGATTTCTGA 60.391 55.000 0.00 0.00 0.00 3.27
2751 5027 0.721718 CGCTCCGTTGGATTTCTGAC 59.278 55.000 0.00 0.00 0.00 3.51
2752 5028 1.673033 CGCTCCGTTGGATTTCTGACT 60.673 52.381 0.00 0.00 0.00 3.41
2753 5029 2.003301 GCTCCGTTGGATTTCTGACTC 58.997 52.381 0.00 0.00 0.00 3.36
2754 5030 2.263077 CTCCGTTGGATTTCTGACTCG 58.737 52.381 0.00 0.00 0.00 4.18
2755 5031 0.721718 CCGTTGGATTTCTGACTCGC 59.278 55.000 0.00 0.00 0.00 5.03
2756 5032 1.673033 CCGTTGGATTTCTGACTCGCT 60.673 52.381 0.00 0.00 0.00 4.93
2757 5033 1.391485 CGTTGGATTTCTGACTCGCTG 59.609 52.381 0.00 0.00 0.00 5.18
2758 5034 2.688507 GTTGGATTTCTGACTCGCTGA 58.311 47.619 0.00 0.00 0.00 4.26
2759 5035 3.067106 GTTGGATTTCTGACTCGCTGAA 58.933 45.455 0.00 0.00 33.31 3.02
2760 5036 3.401033 TGGATTTCTGACTCGCTGAAA 57.599 42.857 0.00 0.00 44.86 2.69
2761 5037 3.738982 TGGATTTCTGACTCGCTGAAAA 58.261 40.909 0.00 0.00 44.25 2.29
2762 5038 3.748048 TGGATTTCTGACTCGCTGAAAAG 59.252 43.478 0.00 0.00 44.25 2.27
2763 5039 3.425492 GGATTTCTGACTCGCTGAAAAGC 60.425 47.826 0.00 0.00 44.25 3.51
2774 5050 2.724349 GCTGAAAAGCGCAAGGATATG 58.276 47.619 11.47 0.00 38.28 1.78
2775 5051 2.542411 GCTGAAAAGCGCAAGGATATGG 60.542 50.000 11.47 0.00 38.28 2.74
2776 5052 2.023673 TGAAAAGCGCAAGGATATGGG 58.976 47.619 11.47 0.00 36.42 4.00
2780 5056 2.669569 CGCAAGGATATGGGCCGG 60.670 66.667 0.00 0.00 0.00 6.13
2781 5057 2.985847 GCAAGGATATGGGCCGGC 60.986 66.667 21.18 21.18 0.00 6.13
2782 5058 2.282462 CAAGGATATGGGCCGGCC 60.282 66.667 38.57 38.57 0.00 6.13
2796 5072 4.832608 GGCCCAGTTCGCGGTAGG 62.833 72.222 6.13 3.34 0.00 3.18
2797 5073 4.078516 GCCCAGTTCGCGGTAGGT 62.079 66.667 6.13 0.00 0.00 3.08
2798 5074 2.713967 GCCCAGTTCGCGGTAGGTA 61.714 63.158 6.13 0.00 0.00 3.08
2799 5075 1.140375 CCCAGTTCGCGGTAGGTAC 59.860 63.158 6.13 0.00 0.00 3.34
2800 5076 1.597797 CCCAGTTCGCGGTAGGTACA 61.598 60.000 6.13 0.00 0.00 2.90
2801 5077 0.457337 CCAGTTCGCGGTAGGTACAC 60.457 60.000 6.13 0.00 0.00 2.90
2802 5078 0.524862 CAGTTCGCGGTAGGTACACT 59.475 55.000 6.13 0.00 0.00 3.55
2803 5079 0.524862 AGTTCGCGGTAGGTACACTG 59.475 55.000 6.13 0.00 0.00 3.66
2804 5080 1.074872 GTTCGCGGTAGGTACACTGC 61.075 60.000 6.13 7.01 45.56 4.40
2805 5081 2.202703 CGCGGTAGGTACACTGCC 60.203 66.667 10.62 9.24 46.16 4.85
2811 5087 2.738013 GTAGGTACACTGCCTCGTTT 57.262 50.000 0.00 0.00 37.54 3.60
2812 5088 3.036075 GTAGGTACACTGCCTCGTTTT 57.964 47.619 0.00 0.00 37.54 2.43
2813 5089 2.165319 AGGTACACTGCCTCGTTTTC 57.835 50.000 0.00 0.00 0.00 2.29
2814 5090 1.692519 AGGTACACTGCCTCGTTTTCT 59.307 47.619 0.00 0.00 0.00 2.52
2815 5091 2.104281 AGGTACACTGCCTCGTTTTCTT 59.896 45.455 0.00 0.00 0.00 2.52
2816 5092 2.876550 GGTACACTGCCTCGTTTTCTTT 59.123 45.455 0.00 0.00 0.00 2.52
2817 5093 3.314357 GGTACACTGCCTCGTTTTCTTTT 59.686 43.478 0.00 0.00 0.00 2.27
2818 5094 3.420839 ACACTGCCTCGTTTTCTTTTG 57.579 42.857 0.00 0.00 0.00 2.44
2819 5095 3.013921 ACACTGCCTCGTTTTCTTTTGA 58.986 40.909 0.00 0.00 0.00 2.69
2820 5096 3.065371 ACACTGCCTCGTTTTCTTTTGAG 59.935 43.478 0.00 0.00 0.00 3.02
2829 5105 7.867752 CCTCGTTTTCTTTTGAGGTAAATACA 58.132 34.615 0.00 0.00 42.45 2.29
2830 5106 7.801783 CCTCGTTTTCTTTTGAGGTAAATACAC 59.198 37.037 0.00 0.00 42.45 2.90
2831 5107 7.641760 TCGTTTTCTTTTGAGGTAAATACACC 58.358 34.615 0.00 0.00 39.02 4.16
2832 5108 7.282675 TCGTTTTCTTTTGAGGTAAATACACCA 59.717 33.333 0.00 0.00 41.40 4.17
2833 5109 7.916450 CGTTTTCTTTTGAGGTAAATACACCAA 59.084 33.333 0.00 0.00 41.40 3.67
2834 5110 9.758651 GTTTTCTTTTGAGGTAAATACACCAAT 57.241 29.630 0.00 0.00 41.40 3.16
2835 5111 9.757227 TTTTCTTTTGAGGTAAATACACCAATG 57.243 29.630 0.00 0.00 41.40 2.82
2836 5112 8.698973 TTCTTTTGAGGTAAATACACCAATGA 57.301 30.769 0.00 0.00 41.40 2.57
2837 5113 8.877864 TCTTTTGAGGTAAATACACCAATGAT 57.122 30.769 0.00 0.00 41.40 2.45
2838 5114 8.739039 TCTTTTGAGGTAAATACACCAATGATG 58.261 33.333 0.00 0.00 41.40 3.07
2839 5115 6.449635 TTGAGGTAAATACACCAATGATGC 57.550 37.500 0.00 0.00 41.40 3.91
2840 5116 5.754782 TGAGGTAAATACACCAATGATGCT 58.245 37.500 0.00 0.00 41.40 3.79
2841 5117 6.186957 TGAGGTAAATACACCAATGATGCTT 58.813 36.000 0.00 0.00 41.40 3.91
2842 5118 6.095300 TGAGGTAAATACACCAATGATGCTTG 59.905 38.462 0.00 0.00 41.40 4.01
2843 5119 6.186957 AGGTAAATACACCAATGATGCTTGA 58.813 36.000 0.00 0.00 41.40 3.02
2844 5120 6.663093 AGGTAAATACACCAATGATGCTTGAA 59.337 34.615 0.00 0.00 41.40 2.69
2845 5121 6.751888 GGTAAATACACCAATGATGCTTGAAC 59.248 38.462 0.00 0.00 38.55 3.18
2846 5122 6.594788 AAATACACCAATGATGCTTGAACT 57.405 33.333 0.00 0.00 0.00 3.01
2847 5123 6.594788 AATACACCAATGATGCTTGAACTT 57.405 33.333 0.00 0.00 0.00 2.66
2848 5124 4.247267 ACACCAATGATGCTTGAACTTG 57.753 40.909 0.00 0.00 0.00 3.16
2849 5125 3.638160 ACACCAATGATGCTTGAACTTGT 59.362 39.130 0.00 0.00 0.00 3.16
2850 5126 4.099881 ACACCAATGATGCTTGAACTTGTT 59.900 37.500 0.00 0.00 0.00 2.83
2851 5127 5.301551 ACACCAATGATGCTTGAACTTGTTA 59.698 36.000 0.00 0.00 0.00 2.41
2852 5128 6.015180 ACACCAATGATGCTTGAACTTGTTAT 60.015 34.615 0.00 0.00 0.00 1.89
2853 5129 6.309494 CACCAATGATGCTTGAACTTGTTATG 59.691 38.462 0.00 0.00 0.00 1.90
2854 5130 5.808540 CCAATGATGCTTGAACTTGTTATGG 59.191 40.000 0.00 0.00 0.00 2.74
2855 5131 6.350361 CCAATGATGCTTGAACTTGTTATGGA 60.350 38.462 0.00 0.00 0.00 3.41
2856 5132 7.262772 CAATGATGCTTGAACTTGTTATGGAT 58.737 34.615 0.00 0.00 0.00 3.41
2857 5133 6.198650 TGATGCTTGAACTTGTTATGGATG 57.801 37.500 0.00 0.00 0.00 3.51
2858 5134 5.711506 TGATGCTTGAACTTGTTATGGATGT 59.288 36.000 0.00 0.00 0.00 3.06
2859 5135 5.375417 TGCTTGAACTTGTTATGGATGTG 57.625 39.130 0.00 0.00 0.00 3.21
2860 5136 4.168760 GCTTGAACTTGTTATGGATGTGC 58.831 43.478 0.00 0.00 0.00 4.57
2861 5137 4.321156 GCTTGAACTTGTTATGGATGTGCA 60.321 41.667 0.00 0.00 0.00 4.57
2862 5138 4.764679 TGAACTTGTTATGGATGTGCAC 57.235 40.909 10.75 10.75 0.00 4.57
2863 5139 4.397420 TGAACTTGTTATGGATGTGCACT 58.603 39.130 19.41 3.19 0.00 4.40
2864 5140 4.826733 TGAACTTGTTATGGATGTGCACTT 59.173 37.500 19.41 12.28 0.00 3.16
2865 5141 5.301551 TGAACTTGTTATGGATGTGCACTTT 59.698 36.000 19.41 5.40 0.00 2.66
2866 5142 6.488344 TGAACTTGTTATGGATGTGCACTTTA 59.512 34.615 19.41 5.79 0.00 1.85
2867 5143 6.500684 ACTTGTTATGGATGTGCACTTTAG 57.499 37.500 19.41 3.72 0.00 1.85
2868 5144 6.003950 ACTTGTTATGGATGTGCACTTTAGT 58.996 36.000 19.41 4.21 0.00 2.24
2869 5145 7.165485 ACTTGTTATGGATGTGCACTTTAGTA 58.835 34.615 19.41 3.22 0.00 1.82
2870 5146 6.978343 TGTTATGGATGTGCACTTTAGTAC 57.022 37.500 19.41 8.66 0.00 2.73
2871 5147 5.878116 TGTTATGGATGTGCACTTTAGTACC 59.122 40.000 19.41 9.22 0.00 3.34
2872 5148 3.343941 TGGATGTGCACTTTAGTACCC 57.656 47.619 19.41 8.52 0.00 3.69
2873 5149 2.277084 GGATGTGCACTTTAGTACCCG 58.723 52.381 19.41 0.00 0.00 5.28
2874 5150 2.093869 GGATGTGCACTTTAGTACCCGA 60.094 50.000 19.41 0.00 0.00 5.14
2875 5151 3.592059 GATGTGCACTTTAGTACCCGAA 58.408 45.455 19.41 0.00 0.00 4.30
2876 5152 2.758009 TGTGCACTTTAGTACCCGAAC 58.242 47.619 19.41 0.00 0.00 3.95
2877 5153 2.366266 TGTGCACTTTAGTACCCGAACT 59.634 45.455 19.41 0.00 0.00 3.01
2878 5154 3.181463 TGTGCACTTTAGTACCCGAACTT 60.181 43.478 19.41 0.00 0.00 2.66
2879 5155 3.185797 GTGCACTTTAGTACCCGAACTTG 59.814 47.826 10.32 0.00 0.00 3.16
2880 5156 2.159037 GCACTTTAGTACCCGAACTTGC 59.841 50.000 0.00 0.00 0.00 4.01
2881 5157 3.395639 CACTTTAGTACCCGAACTTGCA 58.604 45.455 0.00 0.00 0.00 4.08
2882 5158 3.810941 CACTTTAGTACCCGAACTTGCAA 59.189 43.478 0.00 0.00 0.00 4.08
2883 5159 4.273969 CACTTTAGTACCCGAACTTGCAAA 59.726 41.667 0.00 0.00 0.00 3.68
2884 5160 4.883006 ACTTTAGTACCCGAACTTGCAAAA 59.117 37.500 0.00 0.00 0.00 2.44
2885 5161 5.533528 ACTTTAGTACCCGAACTTGCAAAAT 59.466 36.000 0.00 0.00 0.00 1.82
2886 5162 6.711645 ACTTTAGTACCCGAACTTGCAAAATA 59.288 34.615 0.00 0.00 0.00 1.40
2887 5163 6.484818 TTAGTACCCGAACTTGCAAAATAC 57.515 37.500 0.00 0.00 0.00 1.89
2888 5164 4.391155 AGTACCCGAACTTGCAAAATACA 58.609 39.130 0.00 0.00 0.00 2.29
2889 5165 5.007682 AGTACCCGAACTTGCAAAATACAT 58.992 37.500 0.00 0.00 0.00 2.29
2890 5166 4.864704 ACCCGAACTTGCAAAATACATT 57.135 36.364 0.00 0.00 0.00 2.71
2891 5167 4.555262 ACCCGAACTTGCAAAATACATTG 58.445 39.130 0.00 0.00 0.00 2.82
2892 5168 4.279671 ACCCGAACTTGCAAAATACATTGA 59.720 37.500 0.00 0.00 31.84 2.57
2893 5169 5.221342 ACCCGAACTTGCAAAATACATTGAA 60.221 36.000 0.00 0.00 31.84 2.69
2894 5170 5.118510 CCCGAACTTGCAAAATACATTGAAC 59.881 40.000 0.00 0.00 31.84 3.18
2895 5171 5.920273 CCGAACTTGCAAAATACATTGAACT 59.080 36.000 0.00 0.00 31.84 3.01
2896 5172 6.129115 CCGAACTTGCAAAATACATTGAACTG 60.129 38.462 0.00 0.00 31.84 3.16
2897 5173 6.129115 CGAACTTGCAAAATACATTGAACTGG 60.129 38.462 0.00 0.00 31.84 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.201732 AGTTGTATTAGATGCGTGCCG 58.798 47.619 0.00 0.00 0.00 5.69
154 155 3.888323 TGCATCCAGTTGTTTGCTTCTTA 59.112 39.130 0.00 0.00 36.10 2.10
155 156 2.694628 TGCATCCAGTTGTTTGCTTCTT 59.305 40.909 0.00 0.00 36.10 2.52
188 198 5.389642 TGATCGAGCTAAACATTAAAGCG 57.610 39.130 0.90 0.00 41.19 4.68
445 473 0.671796 TTTCGCACCAGAGAAGACGA 59.328 50.000 0.00 0.00 34.99 4.20
474 511 0.390124 TGCTTTTTCTGCTTGGCCAG 59.610 50.000 5.11 1.08 0.00 4.85
547 592 0.771756 CGTGCACAAATGTTTCTGCG 59.228 50.000 18.64 0.00 35.25 5.18
580 625 3.813529 AGTAGCAGCTAAAACAAAGCG 57.186 42.857 2.87 0.00 44.87 4.68
691 2603 0.887387 ACCGAGCTCTCCTATCTCGC 60.887 60.000 12.85 0.00 45.78 5.03
855 2804 6.070881 AGGATGTAGCTAGCTTATGAATGAGG 60.071 42.308 24.88 0.00 0.00 3.86
856 2805 6.934056 AGGATGTAGCTAGCTTATGAATGAG 58.066 40.000 24.88 0.00 0.00 2.90
857 2806 6.924913 AGGATGTAGCTAGCTTATGAATGA 57.075 37.500 24.88 0.00 0.00 2.57
858 2807 9.664332 AAATAGGATGTAGCTAGCTTATGAATG 57.336 33.333 24.88 0.00 0.00 2.67
898 2869 2.634940 CGTAGGTGAGGAATGATGGGAT 59.365 50.000 0.00 0.00 0.00 3.85
901 2872 3.458189 GTTCGTAGGTGAGGAATGATGG 58.542 50.000 0.00 0.00 34.59 3.51
917 2889 1.375523 GGCAATCGAGTGGGTTCGT 60.376 57.895 15.48 0.00 41.22 3.85
919 2891 2.325583 TATGGCAATCGAGTGGGTTC 57.674 50.000 15.48 0.00 0.00 3.62
932 2906 3.470709 GAGCTTGCTAGATGTTATGGCA 58.529 45.455 0.00 0.00 0.00 4.92
953 2927 1.466950 GGAGAGATCGGATGTCTAGCG 59.533 57.143 16.67 0.00 32.40 4.26
959 2933 0.105760 AGCAGGGAGAGATCGGATGT 60.106 55.000 0.00 0.00 0.00 3.06
960 2934 1.000731 GAAGCAGGGAGAGATCGGATG 59.999 57.143 0.00 0.00 0.00 3.51
962 2936 0.260230 AGAAGCAGGGAGAGATCGGA 59.740 55.000 0.00 0.00 0.00 4.55
963 2937 0.388659 CAGAAGCAGGGAGAGATCGG 59.611 60.000 0.00 0.00 0.00 4.18
964 2938 0.388659 CCAGAAGCAGGGAGAGATCG 59.611 60.000 0.00 0.00 0.00 3.69
977 2971 1.477700 CTCTGCTGAGAGTCCCAGAAG 59.522 57.143 15.04 4.39 42.73 2.85
1061 3087 1.682684 CAGTAGTCGGACCTGGCCT 60.683 63.158 3.32 0.00 0.00 5.19
1067 3093 0.103208 CTGATGCCAGTAGTCGGACC 59.897 60.000 4.14 0.00 35.70 4.46
1357 3593 2.124570 AGGTAGCATTGCCCGCAG 60.125 61.111 4.70 0.00 0.00 5.18
1558 3794 0.842030 AGAGGACAGGGACAATGCCA 60.842 55.000 0.00 0.00 0.00 4.92
1615 3851 0.250684 TGAAGCCGCTCATGGTGAAA 60.251 50.000 0.00 0.00 0.00 2.69
1624 3860 0.992802 CGAAGTAGTTGAAGCCGCTC 59.007 55.000 0.00 0.00 0.00 5.03
1651 3887 1.302511 GGCGATGTTGGTCACCAGT 60.303 57.895 0.00 0.00 33.81 4.00
1876 4112 3.676324 GCTAGTAGTCGAACTGTTGCCAT 60.676 47.826 0.00 0.00 0.00 4.40
1921 4164 6.788243 TGAACGAGCGAACTGATAATAGTAA 58.212 36.000 0.00 0.00 0.00 2.24
1961 4209 2.826128 TGAGTATGCGTCTGGAGAGTTT 59.174 45.455 0.00 0.00 0.00 2.66
2051 4299 4.750098 GGTGGTCGTGGATTACAGATATTG 59.250 45.833 0.00 0.00 0.00 1.90
2054 4302 3.638860 AGGTGGTCGTGGATTACAGATA 58.361 45.455 0.00 0.00 0.00 1.98
2130 4388 8.752187 TGCATGCATATATACTGTTCTAGATGA 58.248 33.333 18.46 0.00 0.00 2.92
2150 4408 5.177511 ACGATATGTAGTTACACATGCATGC 59.822 40.000 26.53 11.82 39.46 4.06
2213 4471 4.098654 CGAGGAATCTGACTTAGACATGGT 59.901 45.833 0.00 0.00 38.49 3.55
2410 4677 1.402259 CGGAGCAGTTACTCGTCTCAT 59.598 52.381 7.68 0.00 37.57 2.90
2441 4708 1.421410 CGTCGCTACAATCACCAGCC 61.421 60.000 0.00 0.00 31.43 4.85
2462 4729 5.501715 CCTCAATCCAAATCATCGTAAACG 58.498 41.667 0.00 0.00 41.45 3.60
2477 4744 3.425162 AGTTGTCTCAACCCTCAATCC 57.575 47.619 8.68 0.00 0.00 3.01
2490 4757 5.395768 GCAACTCCCATCTGTATAGTTGTCT 60.396 44.000 13.27 0.00 45.54 3.41
2504 4771 0.036732 TGAAGAAGCGCAACTCCCAT 59.963 50.000 11.47 0.00 0.00 4.00
2506 4773 0.519077 CTTGAAGAAGCGCAACTCCC 59.481 55.000 11.47 4.89 0.00 4.30
2509 4776 2.565841 AGAACTTGAAGAAGCGCAACT 58.434 42.857 11.47 5.18 31.68 3.16
2516 4783 5.395642 GTCTCCTCGTAGAACTTGAAGAAG 58.604 45.833 0.00 0.00 34.09 2.85
2542 4809 1.135139 CCACTAGTCCATGTCCGTCTG 59.865 57.143 0.00 0.00 0.00 3.51
2567 4834 3.131223 CCATATATGGTAGCCACGAGAGG 59.869 52.174 21.85 0.00 43.05 3.69
2586 4862 3.452627 AGAGCTCAAACTTCCGTATCCAT 59.547 43.478 17.77 0.00 0.00 3.41
2587 4863 2.832129 AGAGCTCAAACTTCCGTATCCA 59.168 45.455 17.77 0.00 0.00 3.41
2588 4864 3.528597 AGAGCTCAAACTTCCGTATCC 57.471 47.619 17.77 0.00 0.00 2.59
2589 4865 4.995124 TGTAGAGCTCAAACTTCCGTATC 58.005 43.478 17.77 0.00 0.00 2.24
2604 4880 1.036707 AGGGCTTCGAGATGTAGAGC 58.963 55.000 0.00 0.00 0.00 4.09
2690 4966 8.726988 CCCAATTTAGATTAGTCGAGTGAAAAA 58.273 33.333 2.10 0.00 0.00 1.94
2725 5001 1.379527 ATCCAACGGAGCGGAATTTC 58.620 50.000 0.00 0.00 35.96 2.17
2731 5007 0.391130 TCAGAAATCCAACGGAGCGG 60.391 55.000 0.00 0.00 34.05 5.52
2732 5008 0.721718 GTCAGAAATCCAACGGAGCG 59.278 55.000 0.00 0.00 34.05 5.03
2754 5030 2.542411 CCATATCCTTGCGCTTTTCAGC 60.542 50.000 9.73 0.00 43.41 4.26
2755 5031 2.033801 CCCATATCCTTGCGCTTTTCAG 59.966 50.000 9.73 0.00 0.00 3.02
2756 5032 2.023673 CCCATATCCTTGCGCTTTTCA 58.976 47.619 9.73 0.00 0.00 2.69
2757 5033 1.269257 GCCCATATCCTTGCGCTTTTC 60.269 52.381 9.73 0.00 0.00 2.29
2758 5034 0.746659 GCCCATATCCTTGCGCTTTT 59.253 50.000 9.73 0.00 0.00 2.27
2759 5035 1.109323 GGCCCATATCCTTGCGCTTT 61.109 55.000 9.73 0.00 0.00 3.51
2760 5036 1.529244 GGCCCATATCCTTGCGCTT 60.529 57.895 9.73 0.00 0.00 4.68
2761 5037 2.113986 GGCCCATATCCTTGCGCT 59.886 61.111 9.73 0.00 0.00 5.92
2762 5038 3.357079 CGGCCCATATCCTTGCGC 61.357 66.667 0.00 0.00 0.00 6.09
2763 5039 2.669569 CCGGCCCATATCCTTGCG 60.670 66.667 0.00 0.00 0.00 4.85
2764 5040 2.985847 GCCGGCCCATATCCTTGC 60.986 66.667 18.11 0.00 0.00 4.01
2765 5041 2.282462 GGCCGGCCCATATCCTTG 60.282 66.667 36.64 0.00 0.00 3.61
2779 5055 4.832608 CCTACCGCGAACTGGGCC 62.833 72.222 8.23 0.00 0.00 5.80
2780 5056 2.713967 TACCTACCGCGAACTGGGC 61.714 63.158 8.23 0.00 0.00 5.36
2781 5057 1.140375 GTACCTACCGCGAACTGGG 59.860 63.158 8.23 3.17 0.00 4.45
2782 5058 0.457337 GTGTACCTACCGCGAACTGG 60.457 60.000 8.23 6.78 0.00 4.00
2783 5059 0.524862 AGTGTACCTACCGCGAACTG 59.475 55.000 8.23 0.00 0.00 3.16
2784 5060 0.524862 CAGTGTACCTACCGCGAACT 59.475 55.000 8.23 0.00 0.00 3.01
2785 5061 1.074872 GCAGTGTACCTACCGCGAAC 61.075 60.000 8.23 0.00 0.00 3.95
2786 5062 1.213537 GCAGTGTACCTACCGCGAA 59.786 57.895 8.23 0.00 0.00 4.70
2787 5063 2.703798 GGCAGTGTACCTACCGCGA 61.704 63.158 8.23 0.00 0.00 5.87
2788 5064 2.202703 GGCAGTGTACCTACCGCG 60.203 66.667 0.00 0.00 0.00 6.46
2789 5065 1.141234 GAGGCAGTGTACCTACCGC 59.859 63.158 0.00 0.00 37.77 5.68
2790 5066 1.310933 ACGAGGCAGTGTACCTACCG 61.311 60.000 0.00 0.00 37.77 4.02
2791 5067 0.893447 AACGAGGCAGTGTACCTACC 59.107 55.000 0.00 0.00 37.77 3.18
2792 5068 2.738013 AAACGAGGCAGTGTACCTAC 57.262 50.000 0.00 0.00 37.77 3.18
2793 5069 2.895404 AGAAAACGAGGCAGTGTACCTA 59.105 45.455 0.00 0.00 37.77 3.08
2794 5070 1.692519 AGAAAACGAGGCAGTGTACCT 59.307 47.619 0.00 0.00 41.41 3.08
2795 5071 2.165319 AGAAAACGAGGCAGTGTACC 57.835 50.000 0.00 0.00 0.00 3.34
2796 5072 4.034742 TCAAAAGAAAACGAGGCAGTGTAC 59.965 41.667 0.00 0.00 0.00 2.90
2797 5073 4.193090 TCAAAAGAAAACGAGGCAGTGTA 58.807 39.130 0.00 0.00 0.00 2.90
2798 5074 3.013921 TCAAAAGAAAACGAGGCAGTGT 58.986 40.909 0.00 0.00 0.00 3.55
2799 5075 3.548818 CCTCAAAAGAAAACGAGGCAGTG 60.549 47.826 0.00 0.00 38.74 3.66
2800 5076 2.618709 CCTCAAAAGAAAACGAGGCAGT 59.381 45.455 0.00 0.00 38.74 4.40
2801 5077 3.273919 CCTCAAAAGAAAACGAGGCAG 57.726 47.619 0.00 0.00 38.74 4.85
2805 5081 7.801783 GGTGTATTTACCTCAAAAGAAAACGAG 59.198 37.037 0.00 0.00 37.74 4.18
2806 5082 7.282675 TGGTGTATTTACCTCAAAAGAAAACGA 59.717 33.333 0.00 0.00 41.43 3.85
2807 5083 7.419204 TGGTGTATTTACCTCAAAAGAAAACG 58.581 34.615 0.00 0.00 41.43 3.60
2808 5084 9.758651 ATTGGTGTATTTACCTCAAAAGAAAAC 57.241 29.630 0.00 0.00 41.43 2.43
2809 5085 9.757227 CATTGGTGTATTTACCTCAAAAGAAAA 57.243 29.630 0.00 0.00 41.43 2.29
2810 5086 9.137459 TCATTGGTGTATTTACCTCAAAAGAAA 57.863 29.630 0.00 0.00 41.43 2.52
2811 5087 8.698973 TCATTGGTGTATTTACCTCAAAAGAA 57.301 30.769 0.00 0.00 41.43 2.52
2812 5088 8.739039 CATCATTGGTGTATTTACCTCAAAAGA 58.261 33.333 0.00 0.00 41.43 2.52
2813 5089 7.489113 GCATCATTGGTGTATTTACCTCAAAAG 59.511 37.037 0.00 0.00 41.43 2.27
2814 5090 7.178274 AGCATCATTGGTGTATTTACCTCAAAA 59.822 33.333 0.00 0.00 41.43 2.44
2815 5091 6.663093 AGCATCATTGGTGTATTTACCTCAAA 59.337 34.615 0.00 0.00 41.43 2.69
2816 5092 6.186957 AGCATCATTGGTGTATTTACCTCAA 58.813 36.000 0.00 0.00 41.43 3.02
2817 5093 5.754782 AGCATCATTGGTGTATTTACCTCA 58.245 37.500 0.00 0.00 41.43 3.86
2818 5094 6.318648 TCAAGCATCATTGGTGTATTTACCTC 59.681 38.462 0.00 0.00 41.43 3.85
2819 5095 6.186957 TCAAGCATCATTGGTGTATTTACCT 58.813 36.000 0.00 0.00 41.43 3.08
2820 5096 6.449635 TCAAGCATCATTGGTGTATTTACC 57.550 37.500 0.00 0.00 41.24 2.85
2821 5097 7.538575 AGTTCAAGCATCATTGGTGTATTTAC 58.461 34.615 0.00 0.00 32.86 2.01
2822 5098 7.701539 AGTTCAAGCATCATTGGTGTATTTA 57.298 32.000 0.00 0.00 32.86 1.40
2823 5099 6.594788 AGTTCAAGCATCATTGGTGTATTT 57.405 33.333 0.00 0.00 32.86 1.40
2824 5100 6.015180 ACAAGTTCAAGCATCATTGGTGTATT 60.015 34.615 0.00 0.00 32.86 1.89
2825 5101 5.477984 ACAAGTTCAAGCATCATTGGTGTAT 59.522 36.000 0.00 0.00 32.86 2.29
2826 5102 4.826733 ACAAGTTCAAGCATCATTGGTGTA 59.173 37.500 0.00 0.00 32.86 2.90
2827 5103 3.638160 ACAAGTTCAAGCATCATTGGTGT 59.362 39.130 0.00 0.00 32.86 4.16
2828 5104 4.247267 ACAAGTTCAAGCATCATTGGTG 57.753 40.909 0.00 0.00 32.86 4.17
2829 5105 4.942761 AACAAGTTCAAGCATCATTGGT 57.057 36.364 0.00 0.00 34.30 3.67
2830 5106 5.808540 CCATAACAAGTTCAAGCATCATTGG 59.191 40.000 0.00 0.00 0.00 3.16
2831 5107 6.623486 TCCATAACAAGTTCAAGCATCATTG 58.377 36.000 0.00 0.00 0.00 2.82
2832 5108 6.839124 TCCATAACAAGTTCAAGCATCATT 57.161 33.333 0.00 0.00 0.00 2.57
2833 5109 6.379133 ACATCCATAACAAGTTCAAGCATCAT 59.621 34.615 0.00 0.00 0.00 2.45
2834 5110 5.711506 ACATCCATAACAAGTTCAAGCATCA 59.288 36.000 0.00 0.00 0.00 3.07
2835 5111 6.032094 CACATCCATAACAAGTTCAAGCATC 58.968 40.000 0.00 0.00 0.00 3.91
2836 5112 5.622914 GCACATCCATAACAAGTTCAAGCAT 60.623 40.000 0.00 0.00 0.00 3.79
2837 5113 4.321156 GCACATCCATAACAAGTTCAAGCA 60.321 41.667 0.00 0.00 0.00 3.91
2838 5114 4.168760 GCACATCCATAACAAGTTCAAGC 58.831 43.478 0.00 0.00 0.00 4.01
2839 5115 5.048504 AGTGCACATCCATAACAAGTTCAAG 60.049 40.000 21.04 0.00 0.00 3.02
2840 5116 4.826733 AGTGCACATCCATAACAAGTTCAA 59.173 37.500 21.04 0.00 0.00 2.69
2841 5117 4.397420 AGTGCACATCCATAACAAGTTCA 58.603 39.130 21.04 0.00 0.00 3.18
2842 5118 5.376854 AAGTGCACATCCATAACAAGTTC 57.623 39.130 21.04 0.00 0.00 3.01
2843 5119 5.789643 AAAGTGCACATCCATAACAAGTT 57.210 34.783 21.04 0.00 0.00 2.66
2844 5120 6.003950 ACTAAAGTGCACATCCATAACAAGT 58.996 36.000 21.04 2.44 0.00 3.16
2845 5121 6.500684 ACTAAAGTGCACATCCATAACAAG 57.499 37.500 21.04 1.82 0.00 3.16
2846 5122 6.373216 GGTACTAAAGTGCACATCCATAACAA 59.627 38.462 21.04 0.00 32.02 2.83
2847 5123 5.878116 GGTACTAAAGTGCACATCCATAACA 59.122 40.000 21.04 0.00 32.02 2.41
2848 5124 5.296035 GGGTACTAAAGTGCACATCCATAAC 59.704 44.000 21.04 8.19 34.06 1.89
2849 5125 5.433526 GGGTACTAAAGTGCACATCCATAA 58.566 41.667 21.04 0.00 34.06 1.90
2850 5126 4.442332 CGGGTACTAAAGTGCACATCCATA 60.442 45.833 21.04 2.77 33.45 2.74
2851 5127 3.681594 CGGGTACTAAAGTGCACATCCAT 60.682 47.826 21.04 3.82 33.45 3.41
2852 5128 2.354303 CGGGTACTAAAGTGCACATCCA 60.354 50.000 21.04 0.00 33.45 3.41
2853 5129 2.093869 TCGGGTACTAAAGTGCACATCC 60.094 50.000 21.04 5.67 33.45 3.51
2854 5130 3.241067 TCGGGTACTAAAGTGCACATC 57.759 47.619 21.04 0.00 33.45 3.06
2855 5131 3.007614 AGTTCGGGTACTAAAGTGCACAT 59.992 43.478 21.04 3.48 33.45 3.21
2856 5132 2.366266 AGTTCGGGTACTAAAGTGCACA 59.634 45.455 21.04 0.00 33.45 4.57
2857 5133 3.036075 AGTTCGGGTACTAAAGTGCAC 57.964 47.619 9.40 9.40 32.02 4.57
2858 5134 3.395639 CAAGTTCGGGTACTAAAGTGCA 58.604 45.455 0.65 0.00 32.02 4.57
2859 5135 2.159037 GCAAGTTCGGGTACTAAAGTGC 59.841 50.000 0.00 0.00 0.00 4.40
2860 5136 3.395639 TGCAAGTTCGGGTACTAAAGTG 58.604 45.455 0.00 0.00 0.00 3.16
2861 5137 3.756933 TGCAAGTTCGGGTACTAAAGT 57.243 42.857 0.00 0.00 0.00 2.66
2862 5138 5.427036 TTTTGCAAGTTCGGGTACTAAAG 57.573 39.130 0.00 0.00 0.00 1.85
2863 5139 6.485984 TGTATTTTGCAAGTTCGGGTACTAAA 59.514 34.615 0.00 0.00 0.00 1.85
2864 5140 5.996513 TGTATTTTGCAAGTTCGGGTACTAA 59.003 36.000 0.00 0.00 0.00 2.24
2865 5141 5.549347 TGTATTTTGCAAGTTCGGGTACTA 58.451 37.500 0.00 0.00 0.00 1.82
2866 5142 4.391155 TGTATTTTGCAAGTTCGGGTACT 58.609 39.130 0.00 0.00 0.00 2.73
2867 5143 4.752661 TGTATTTTGCAAGTTCGGGTAC 57.247 40.909 0.00 0.00 0.00 3.34
2868 5144 5.473846 TCAATGTATTTTGCAAGTTCGGGTA 59.526 36.000 0.00 0.00 0.00 3.69
2869 5145 4.279671 TCAATGTATTTTGCAAGTTCGGGT 59.720 37.500 0.00 0.00 0.00 5.28
2870 5146 4.804108 TCAATGTATTTTGCAAGTTCGGG 58.196 39.130 0.00 0.00 0.00 5.14
2871 5147 5.920273 AGTTCAATGTATTTTGCAAGTTCGG 59.080 36.000 0.00 0.00 0.00 4.30
2872 5148 6.129115 CCAGTTCAATGTATTTTGCAAGTTCG 60.129 38.462 0.00 0.00 0.00 3.95
2873 5149 7.109006 CCAGTTCAATGTATTTTGCAAGTTC 57.891 36.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.