Multiple sequence alignment - TraesCS4A01G034000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G034000 chr4A 100.000 3167 0 0 1 3167 26024053 26020887 0.000000e+00 5849
1 TraesCS4A01G034000 chr5A 92.742 2301 160 2 871 3165 646996657 646998956 0.000000e+00 3317
2 TraesCS4A01G034000 chr1B 91.223 2290 199 2 878 3165 401558431 401560720 0.000000e+00 3114
3 TraesCS4A01G034000 chr1B 78.793 580 106 16 3 571 17618072 17617499 1.070000e-99 374
4 TraesCS4A01G034000 chr1B 78.547 578 111 13 3 571 407307331 407306758 4.990000e-98 368
5 TraesCS4A01G034000 chr6A 92.815 1350 88 3 880 2222 608223428 608224775 0.000000e+00 1947
6 TraesCS4A01G034000 chr6A 96.036 555 22 0 2218 2772 608233219 608233773 0.000000e+00 904
7 TraesCS4A01G034000 chr6A 94.472 398 21 1 2768 3165 608257095 608257491 2.090000e-171 612
8 TraesCS4A01G034000 chr2A 92.462 1300 97 1 878 2177 41178191 41176893 0.000000e+00 1857
9 TraesCS4A01G034000 chr2A 94.720 947 50 0 2219 3165 41176670 41175724 0.000000e+00 1472
10 TraesCS4A01G034000 chr4B 90.979 1308 115 2 878 2183 495076279 495077585 0.000000e+00 1759
11 TraesCS4A01G034000 chr4B 90.972 1296 111 6 875 2166 38776870 38778163 0.000000e+00 1740
12 TraesCS4A01G034000 chr4B 89.266 885 89 4 2284 3165 495077796 495078677 0.000000e+00 1103
13 TraesCS4A01G034000 chr4B 87.991 916 108 2 2249 3163 38778541 38779455 0.000000e+00 1081
14 TraesCS4A01G034000 chr4B 78.863 563 106 13 3 556 3910268 3910826 4.990000e-98 368
15 TraesCS4A01G034000 chr6B 78.584 2316 464 28 871 3167 573746907 573744605 0.000000e+00 1500
16 TraesCS4A01G034000 chr2B 85.092 758 108 4 2413 3167 675501894 675502649 0.000000e+00 769
17 TraesCS4A01G034000 chr2B 76.486 774 167 13 1000 1764 217273683 217272916 1.060000e-109 407
18 TraesCS4A01G034000 chr2B 78.330 563 109 13 3 556 616457287 616457845 5.030000e-93 351
19 TraesCS4A01G034000 chr7D 75.778 900 204 12 2195 3087 76796617 76797509 2.900000e-120 442
20 TraesCS4A01G034000 chr7D 76.119 402 94 2 1065 1465 408464170 408464570 3.200000e-50 209
21 TraesCS4A01G034000 chr3A 78.893 578 109 13 3 571 742043089 742042516 2.310000e-101 379
22 TraesCS4A01G034000 chr3B 78.720 578 110 13 3 571 578618559 578617986 1.070000e-99 374
23 TraesCS4A01G034000 chr3B 74.298 712 167 13 2013 2715 18783391 18784095 1.440000e-73 287
24 TraesCS4A01G034000 chr7A 78.374 578 112 13 3 571 217583528 217582955 2.320000e-96 363
25 TraesCS4A01G034000 chr7A 77.915 566 110 14 3 556 691471523 691472085 3.910000e-89 339
26 TraesCS4A01G034000 chr5B 77.855 578 114 14 3 571 619644 619072 2.340000e-91 346
27 TraesCS4A01G034000 chr5D 76.634 505 114 4 2015 2517 263996821 263997323 3.110000e-70 276
28 TraesCS4A01G034000 chr5D 84.564 149 20 3 2128 2274 300933976 300933829 9.160000e-31 145
29 TraesCS4A01G034000 chr1A 74.062 640 162 4 1064 1701 491304835 491305472 3.130000e-65 259
30 TraesCS4A01G034000 chr2D 90.625 160 15 0 2119 2278 591662676 591662517 2.470000e-51 213
31 TraesCS4A01G034000 chr4D 90.370 135 10 2 730 861 441510573 441510707 1.170000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G034000 chr4A 26020887 26024053 3166 True 5849.0 5849 100.0000 1 3167 1 chr4A.!!$R1 3166
1 TraesCS4A01G034000 chr5A 646996657 646998956 2299 False 3317.0 3317 92.7420 871 3165 1 chr5A.!!$F1 2294
2 TraesCS4A01G034000 chr1B 401558431 401560720 2289 False 3114.0 3114 91.2230 878 3165 1 chr1B.!!$F1 2287
3 TraesCS4A01G034000 chr1B 17617499 17618072 573 True 374.0 374 78.7930 3 571 1 chr1B.!!$R1 568
4 TraesCS4A01G034000 chr1B 407306758 407307331 573 True 368.0 368 78.5470 3 571 1 chr1B.!!$R2 568
5 TraesCS4A01G034000 chr6A 608223428 608224775 1347 False 1947.0 1947 92.8150 880 2222 1 chr6A.!!$F1 1342
6 TraesCS4A01G034000 chr6A 608233219 608233773 554 False 904.0 904 96.0360 2218 2772 1 chr6A.!!$F2 554
7 TraesCS4A01G034000 chr2A 41175724 41178191 2467 True 1664.5 1857 93.5910 878 3165 2 chr2A.!!$R1 2287
8 TraesCS4A01G034000 chr4B 495076279 495078677 2398 False 1431.0 1759 90.1225 878 3165 2 chr4B.!!$F3 2287
9 TraesCS4A01G034000 chr4B 38776870 38779455 2585 False 1410.5 1740 89.4815 875 3163 2 chr4B.!!$F2 2288
10 TraesCS4A01G034000 chr4B 3910268 3910826 558 False 368.0 368 78.8630 3 556 1 chr4B.!!$F1 553
11 TraesCS4A01G034000 chr6B 573744605 573746907 2302 True 1500.0 1500 78.5840 871 3167 1 chr6B.!!$R1 2296
12 TraesCS4A01G034000 chr2B 675501894 675502649 755 False 769.0 769 85.0920 2413 3167 1 chr2B.!!$F2 754
13 TraesCS4A01G034000 chr2B 217272916 217273683 767 True 407.0 407 76.4860 1000 1764 1 chr2B.!!$R1 764
14 TraesCS4A01G034000 chr2B 616457287 616457845 558 False 351.0 351 78.3300 3 556 1 chr2B.!!$F1 553
15 TraesCS4A01G034000 chr7D 76796617 76797509 892 False 442.0 442 75.7780 2195 3087 1 chr7D.!!$F1 892
16 TraesCS4A01G034000 chr3A 742042516 742043089 573 True 379.0 379 78.8930 3 571 1 chr3A.!!$R1 568
17 TraesCS4A01G034000 chr3B 578617986 578618559 573 True 374.0 374 78.7200 3 571 1 chr3B.!!$R1 568
18 TraesCS4A01G034000 chr3B 18783391 18784095 704 False 287.0 287 74.2980 2013 2715 1 chr3B.!!$F1 702
19 TraesCS4A01G034000 chr7A 217582955 217583528 573 True 363.0 363 78.3740 3 571 1 chr7A.!!$R1 568
20 TraesCS4A01G034000 chr7A 691471523 691472085 562 False 339.0 339 77.9150 3 556 1 chr7A.!!$F1 553
21 TraesCS4A01G034000 chr5B 619072 619644 572 True 346.0 346 77.8550 3 571 1 chr5B.!!$R1 568
22 TraesCS4A01G034000 chr5D 263996821 263997323 502 False 276.0 276 76.6340 2015 2517 1 chr5D.!!$F1 502
23 TraesCS4A01G034000 chr1A 491304835 491305472 637 False 259.0 259 74.0620 1064 1701 1 chr1A.!!$F1 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
682 693 0.032403 TTTCATCGAACCGTGGTCGT 59.968 50.0 10.43 0.0 35.01 4.34 F
707 718 0.036164 ACCGGCTGACACATGCTTTA 59.964 50.0 0.00 0.0 0.00 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2068 0.178873 AAGGTGAAGTAGCCTCCCCA 60.179 55.0 0.00 0.0 33.24 4.96 R
2587 2904 0.935898 GAGAGATGCTCATGTTGCCG 59.064 55.0 10.03 0.0 43.38 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.228657 GCAAGGACTTCCCACACGAC 61.229 60.000 0.00 0.00 37.41 4.34
36 37 1.661480 CACGACGGTGGTGGAAGTA 59.339 57.895 14.60 0.00 40.58 2.24
41 42 1.617357 GACGGTGGTGGAAGTAGTTCT 59.383 52.381 10.10 0.00 32.72 3.01
46 47 2.234168 GTGGTGGAAGTAGTTCTCTCCC 59.766 54.545 10.10 5.89 32.72 4.30
49 50 1.183549 GGAAGTAGTTCTCTCCCGCA 58.816 55.000 10.10 0.00 32.72 5.69
65 66 4.827087 CACGGCCTCGATGCTGCT 62.827 66.667 19.88 6.17 41.47 4.24
66 67 4.827087 ACGGCCTCGATGCTGCTG 62.827 66.667 19.88 11.56 41.47 4.41
71 73 2.729479 CCTCGATGCTGCTGTCCCT 61.729 63.158 0.00 0.00 0.00 4.20
72 74 1.521010 CTCGATGCTGCTGTCCCTG 60.521 63.158 0.00 0.00 0.00 4.45
77 79 0.610232 ATGCTGCTGTCCCTGTTTCC 60.610 55.000 0.00 0.00 0.00 3.13
78 80 1.228245 GCTGCTGTCCCTGTTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
84 86 1.600916 GTCCCTGTTTCCAGCGCTT 60.601 57.895 7.50 0.00 37.38 4.68
86 88 1.600636 CCCTGTTTCCAGCGCTTCA 60.601 57.895 7.50 1.33 37.38 3.02
87 89 1.172180 CCCTGTTTCCAGCGCTTCAA 61.172 55.000 7.50 0.00 37.38 2.69
93 95 0.887933 TTCCAGCGCTTCAATTTCCC 59.112 50.000 7.50 0.00 0.00 3.97
94 96 1.137404 CCAGCGCTTCAATTTCCCG 59.863 57.895 7.50 0.00 0.00 5.14
108 110 1.870941 TTCCCGTCCTCTAGGCCTCA 61.871 60.000 9.68 0.00 34.44 3.86
115 117 1.221523 TCCTCTAGGCCTCATGATGGT 59.778 52.381 9.68 0.00 34.44 3.55
116 118 2.450886 TCCTCTAGGCCTCATGATGGTA 59.549 50.000 9.68 0.00 34.44 3.25
117 119 3.078153 TCCTCTAGGCCTCATGATGGTAT 59.922 47.826 9.68 0.00 34.44 2.73
118 120 3.450457 CCTCTAGGCCTCATGATGGTATC 59.550 52.174 9.68 0.00 0.00 2.24
134 136 2.158957 GGTATCCTCAATGAGACGGCAA 60.159 50.000 12.53 0.00 0.00 4.52
137 139 0.745845 CCTCAATGAGACGGCAAGGG 60.746 60.000 12.53 0.00 0.00 3.95
140 142 1.002134 AATGAGACGGCAAGGGTGG 60.002 57.895 0.00 0.00 0.00 4.61
141 143 1.779061 AATGAGACGGCAAGGGTGGT 61.779 55.000 0.00 0.00 0.00 4.16
142 144 2.358737 GAGACGGCAAGGGTGGTG 60.359 66.667 0.00 0.00 0.00 4.17
147 150 1.072505 CGGCAAGGGTGGTGTAAGT 59.927 57.895 0.00 0.00 0.00 2.24
150 153 0.109723 GCAAGGGTGGTGTAAGTCCA 59.890 55.000 0.00 0.00 0.00 4.02
159 162 1.376683 TGTAAGTCCATGGTGGCGC 60.377 57.895 12.58 0.00 37.47 6.53
168 171 2.638354 ATGGTGGCGCATGTTGGTG 61.638 57.895 10.83 0.00 0.00 4.17
175 178 4.054825 GCATGTTGGTGGGTGGCG 62.055 66.667 0.00 0.00 0.00 5.69
198 201 1.614317 CCAGTTGGAAGGCTTCGGATT 60.614 52.381 20.26 5.99 37.39 3.01
201 204 0.404040 TTGGAAGGCTTCGGATTGGT 59.596 50.000 20.26 0.00 0.00 3.67
205 208 2.513897 GGCTTCGGATTGGTCGGG 60.514 66.667 0.00 0.00 0.00 5.14
211 214 1.520787 CGGATTGGTCGGGTAGTGC 60.521 63.158 0.00 0.00 0.00 4.40
214 217 0.249398 GATTGGTCGGGTAGTGCTGT 59.751 55.000 0.00 0.00 0.00 4.40
215 218 0.249398 ATTGGTCGGGTAGTGCTGTC 59.751 55.000 0.00 0.00 0.00 3.51
220 223 2.990479 GGGTAGTGCTGTCTGGGG 59.010 66.667 0.00 0.00 0.00 4.96
224 227 1.841103 TAGTGCTGTCTGGGGTGCA 60.841 57.895 0.00 0.00 0.00 4.57
245 248 0.035439 GAGAAATCCCTGCCGGTTCA 60.035 55.000 1.90 0.00 0.00 3.18
294 297 1.378514 GCCGCCATTCCTTCCTGAA 60.379 57.895 0.00 0.00 0.00 3.02
305 308 0.035458 CTTCCTGAAGGGCGTCAGTT 59.965 55.000 13.74 0.00 43.02 3.16
316 319 1.092348 GCGTCAGTTTTACCCATCCC 58.908 55.000 0.00 0.00 0.00 3.85
322 325 2.078611 AGTTTTACCCATCCCCCACTT 58.921 47.619 0.00 0.00 0.00 3.16
335 338 4.379243 CACTTCCCTCCGCGTGCT 62.379 66.667 4.92 0.00 0.00 4.40
369 372 2.238847 GACATGTCCGGGCAGTAGCA 62.239 60.000 16.89 0.00 44.61 3.49
376 383 1.589993 CGGGCAGTAGCATCGTCAG 60.590 63.158 0.00 0.00 44.61 3.51
381 388 0.179163 CAGTAGCATCGTCAGCGTCA 60.179 55.000 0.00 0.00 39.49 4.35
386 393 0.443869 GCATCGTCAGCGTCACATTT 59.556 50.000 0.00 0.00 39.49 2.32
390 397 3.291809 TCGTCAGCGTCACATTTCTTA 57.708 42.857 0.00 0.00 39.49 2.10
394 401 4.091365 CGTCAGCGTCACATTTCTTATTGA 59.909 41.667 0.00 0.00 0.00 2.57
395 402 5.554636 GTCAGCGTCACATTTCTTATTGAG 58.445 41.667 0.00 0.00 0.00 3.02
396 403 4.093408 TCAGCGTCACATTTCTTATTGAGC 59.907 41.667 0.00 0.00 0.00 4.26
397 404 4.002982 AGCGTCACATTTCTTATTGAGCA 58.997 39.130 0.00 0.00 0.00 4.26
417 425 3.118454 CTGCTTGGTACGCGGTGG 61.118 66.667 12.47 0.00 0.00 4.61
447 456 0.536460 GGTGTGTGGTGGGACGAATT 60.536 55.000 0.00 0.00 0.00 2.17
455 464 1.611261 TGGGACGAATTCGGAGGGT 60.611 57.895 29.79 10.19 44.95 4.34
475 484 4.101448 AGCGGTGGTGGCTCATCC 62.101 66.667 0.00 0.00 35.37 3.51
489 498 0.458543 TCATCCGAGCTTTGTCGAGC 60.459 55.000 0.00 0.00 42.85 5.03
501 510 1.201825 GTCGAGCTGTCGTTGTTGC 59.798 57.895 0.00 0.00 46.85 4.17
507 516 2.225491 GAGCTGTCGTTGTTGCCATTTA 59.775 45.455 0.00 0.00 0.00 1.40
508 517 2.819608 AGCTGTCGTTGTTGCCATTTAT 59.180 40.909 0.00 0.00 0.00 1.40
513 522 5.457140 TGTCGTTGTTGCCATTTATTTCTC 58.543 37.500 0.00 0.00 0.00 2.87
514 523 5.240623 TGTCGTTGTTGCCATTTATTTCTCT 59.759 36.000 0.00 0.00 0.00 3.10
518 527 6.089417 CGTTGTTGCCATTTATTTCTCTTTCC 59.911 38.462 0.00 0.00 0.00 3.13
552 563 2.594592 GTGTTGTTCGCCCCAGCT 60.595 61.111 0.00 0.00 36.60 4.24
556 567 2.192861 TTGTTCGCCCCAGCTGTTG 61.193 57.895 13.81 4.04 36.60 3.33
570 581 3.056952 GCTGTTGCTATTTGATCGGTG 57.943 47.619 0.00 0.00 36.03 4.94
571 582 2.420022 GCTGTTGCTATTTGATCGGTGT 59.580 45.455 0.00 0.00 36.03 4.16
572 583 3.119849 GCTGTTGCTATTTGATCGGTGTT 60.120 43.478 0.00 0.00 36.03 3.32
573 584 4.406069 CTGTTGCTATTTGATCGGTGTTG 58.594 43.478 0.00 0.00 0.00 3.33
574 585 3.190327 TGTTGCTATTTGATCGGTGTTGG 59.810 43.478 0.00 0.00 0.00 3.77
575 586 3.066291 TGCTATTTGATCGGTGTTGGT 57.934 42.857 0.00 0.00 0.00 3.67
576 587 3.417101 TGCTATTTGATCGGTGTTGGTT 58.583 40.909 0.00 0.00 0.00 3.67
577 588 3.823873 TGCTATTTGATCGGTGTTGGTTT 59.176 39.130 0.00 0.00 0.00 3.27
578 589 4.083003 TGCTATTTGATCGGTGTTGGTTTC 60.083 41.667 0.00 0.00 0.00 2.78
579 590 4.156008 GCTATTTGATCGGTGTTGGTTTCT 59.844 41.667 0.00 0.00 0.00 2.52
580 591 5.335661 GCTATTTGATCGGTGTTGGTTTCTT 60.336 40.000 0.00 0.00 0.00 2.52
581 592 4.993029 TTTGATCGGTGTTGGTTTCTTT 57.007 36.364 0.00 0.00 0.00 2.52
582 593 4.993029 TTGATCGGTGTTGGTTTCTTTT 57.007 36.364 0.00 0.00 0.00 2.27
583 594 4.300189 TGATCGGTGTTGGTTTCTTTTG 57.700 40.909 0.00 0.00 0.00 2.44
584 595 3.697045 TGATCGGTGTTGGTTTCTTTTGT 59.303 39.130 0.00 0.00 0.00 2.83
585 596 3.495670 TCGGTGTTGGTTTCTTTTGTG 57.504 42.857 0.00 0.00 0.00 3.33
586 597 2.820787 TCGGTGTTGGTTTCTTTTGTGT 59.179 40.909 0.00 0.00 0.00 3.72
587 598 4.008330 TCGGTGTTGGTTTCTTTTGTGTA 58.992 39.130 0.00 0.00 0.00 2.90
588 599 4.458295 TCGGTGTTGGTTTCTTTTGTGTAA 59.542 37.500 0.00 0.00 0.00 2.41
589 600 5.125739 TCGGTGTTGGTTTCTTTTGTGTAAT 59.874 36.000 0.00 0.00 0.00 1.89
590 601 5.231147 CGGTGTTGGTTTCTTTTGTGTAATG 59.769 40.000 0.00 0.00 0.00 1.90
591 602 6.103330 GGTGTTGGTTTCTTTTGTGTAATGT 58.897 36.000 0.00 0.00 0.00 2.71
592 603 6.035542 GGTGTTGGTTTCTTTTGTGTAATGTG 59.964 38.462 0.00 0.00 0.00 3.21
593 604 6.035542 GTGTTGGTTTCTTTTGTGTAATGTGG 59.964 38.462 0.00 0.00 0.00 4.17
594 605 5.923733 TGGTTTCTTTTGTGTAATGTGGT 57.076 34.783 0.00 0.00 0.00 4.16
595 606 5.655488 TGGTTTCTTTTGTGTAATGTGGTG 58.345 37.500 0.00 0.00 0.00 4.17
596 607 5.186021 TGGTTTCTTTTGTGTAATGTGGTGT 59.814 36.000 0.00 0.00 0.00 4.16
597 608 5.518487 GGTTTCTTTTGTGTAATGTGGTGTG 59.482 40.000 0.00 0.00 0.00 3.82
598 609 6.326375 GTTTCTTTTGTGTAATGTGGTGTGA 58.674 36.000 0.00 0.00 0.00 3.58
599 610 5.749596 TCTTTTGTGTAATGTGGTGTGAG 57.250 39.130 0.00 0.00 0.00 3.51
600 611 5.189928 TCTTTTGTGTAATGTGGTGTGAGT 58.810 37.500 0.00 0.00 0.00 3.41
601 612 5.650266 TCTTTTGTGTAATGTGGTGTGAGTT 59.350 36.000 0.00 0.00 0.00 3.01
602 613 6.824196 TCTTTTGTGTAATGTGGTGTGAGTTA 59.176 34.615 0.00 0.00 0.00 2.24
603 614 6.612247 TTTGTGTAATGTGGTGTGAGTTAG 57.388 37.500 0.00 0.00 0.00 2.34
604 615 5.538849 TGTGTAATGTGGTGTGAGTTAGA 57.461 39.130 0.00 0.00 0.00 2.10
605 616 5.538118 TGTGTAATGTGGTGTGAGTTAGAG 58.462 41.667 0.00 0.00 0.00 2.43
606 617 5.303333 TGTGTAATGTGGTGTGAGTTAGAGA 59.697 40.000 0.00 0.00 0.00 3.10
607 618 6.014584 TGTGTAATGTGGTGTGAGTTAGAGAT 60.015 38.462 0.00 0.00 0.00 2.75
608 619 7.177744 TGTGTAATGTGGTGTGAGTTAGAGATA 59.822 37.037 0.00 0.00 0.00 1.98
609 620 7.702772 GTGTAATGTGGTGTGAGTTAGAGATAG 59.297 40.741 0.00 0.00 0.00 2.08
610 621 7.614192 TGTAATGTGGTGTGAGTTAGAGATAGA 59.386 37.037 0.00 0.00 0.00 1.98
611 622 7.482169 AATGTGGTGTGAGTTAGAGATAGAA 57.518 36.000 0.00 0.00 0.00 2.10
612 623 6.268825 TGTGGTGTGAGTTAGAGATAGAAC 57.731 41.667 0.00 0.00 0.00 3.01
613 624 5.773176 TGTGGTGTGAGTTAGAGATAGAACA 59.227 40.000 0.00 0.00 0.00 3.18
614 625 6.437477 TGTGGTGTGAGTTAGAGATAGAACAT 59.563 38.462 0.00 0.00 0.00 2.71
615 626 6.975772 GTGGTGTGAGTTAGAGATAGAACATC 59.024 42.308 0.00 0.00 0.00 3.06
616 627 6.663523 TGGTGTGAGTTAGAGATAGAACATCA 59.336 38.462 0.00 0.00 0.00 3.07
617 628 7.343057 TGGTGTGAGTTAGAGATAGAACATCAT 59.657 37.037 0.00 0.00 0.00 2.45
618 629 8.200792 GGTGTGAGTTAGAGATAGAACATCATT 58.799 37.037 0.00 0.00 0.00 2.57
619 630 9.593134 GTGTGAGTTAGAGATAGAACATCATTT 57.407 33.333 0.00 0.00 0.00 2.32
620 631 9.809096 TGTGAGTTAGAGATAGAACATCATTTC 57.191 33.333 0.00 0.00 0.00 2.17
640 651 9.681692 TCATTTCTATGAAAAACTTCACATGTG 57.318 29.630 20.18 20.18 37.83 3.21
641 652 7.928908 TTTCTATGAAAAACTTCACATGTGC 57.071 32.000 21.38 4.97 33.23 4.57
642 653 6.012658 TCTATGAAAAACTTCACATGTGCC 57.987 37.500 21.38 3.29 33.23 5.01
643 654 3.451141 TGAAAAACTTCACATGTGCCC 57.549 42.857 21.38 4.25 0.00 5.36
644 655 3.030291 TGAAAAACTTCACATGTGCCCT 58.970 40.909 21.38 2.10 0.00 5.19
645 656 3.450457 TGAAAAACTTCACATGTGCCCTT 59.550 39.130 21.38 8.26 0.00 3.95
646 657 3.733443 AAAACTTCACATGTGCCCTTC 57.267 42.857 21.38 0.00 0.00 3.46
647 658 1.238439 AACTTCACATGTGCCCTTCG 58.762 50.000 21.38 7.49 0.00 3.79
648 659 0.108585 ACTTCACATGTGCCCTTCGT 59.891 50.000 21.38 8.07 0.00 3.85
649 660 1.346395 ACTTCACATGTGCCCTTCGTA 59.654 47.619 21.38 0.00 0.00 3.43
650 661 2.224426 ACTTCACATGTGCCCTTCGTAA 60.224 45.455 21.38 6.57 0.00 3.18
651 662 2.552599 TCACATGTGCCCTTCGTAAA 57.447 45.000 21.38 0.00 0.00 2.01
652 663 2.147958 TCACATGTGCCCTTCGTAAAC 58.852 47.619 21.38 0.00 0.00 2.01
653 664 1.876799 CACATGTGCCCTTCGTAAACA 59.123 47.619 13.94 0.00 0.00 2.83
654 665 2.292016 CACATGTGCCCTTCGTAAACAA 59.708 45.455 13.94 0.00 0.00 2.83
655 666 2.292292 ACATGTGCCCTTCGTAAACAAC 59.708 45.455 0.00 0.00 0.00 3.32
656 667 2.039818 TGTGCCCTTCGTAAACAACA 57.960 45.000 0.00 0.00 0.00 3.33
657 668 2.577700 TGTGCCCTTCGTAAACAACAT 58.422 42.857 0.00 0.00 0.00 2.71
658 669 2.550606 TGTGCCCTTCGTAAACAACATC 59.449 45.455 0.00 0.00 0.00 3.06
659 670 2.095415 GTGCCCTTCGTAAACAACATCC 60.095 50.000 0.00 0.00 0.00 3.51
660 671 2.224670 TGCCCTTCGTAAACAACATCCT 60.225 45.455 0.00 0.00 0.00 3.24
661 672 2.817844 GCCCTTCGTAAACAACATCCTT 59.182 45.455 0.00 0.00 0.00 3.36
662 673 3.365969 GCCCTTCGTAAACAACATCCTTG 60.366 47.826 0.00 0.00 0.00 3.61
663 674 3.818773 CCCTTCGTAAACAACATCCTTGT 59.181 43.478 0.00 0.00 37.82 3.16
666 677 5.912955 CCTTCGTAAACAACATCCTTGTTTC 59.087 40.000 13.09 6.36 46.14 2.78
667 678 6.438259 TTCGTAAACAACATCCTTGTTTCA 57.562 33.333 13.09 0.00 46.14 2.69
668 679 6.627395 TCGTAAACAACATCCTTGTTTCAT 57.373 33.333 13.09 0.00 46.14 2.57
669 680 6.664515 TCGTAAACAACATCCTTGTTTCATC 58.335 36.000 13.09 6.47 46.14 2.92
670 681 5.563751 CGTAAACAACATCCTTGTTTCATCG 59.436 40.000 13.09 12.45 46.14 3.84
671 682 5.766150 AAACAACATCCTTGTTTCATCGA 57.234 34.783 5.54 0.00 46.14 3.59
672 683 5.766150 AACAACATCCTTGTTTCATCGAA 57.234 34.783 0.00 0.00 43.57 3.71
673 684 5.108385 ACAACATCCTTGTTTCATCGAAC 57.892 39.130 0.00 0.00 43.57 3.95
674 685 4.023193 ACAACATCCTTGTTTCATCGAACC 60.023 41.667 0.00 0.00 43.57 3.62
675 686 2.742053 ACATCCTTGTTTCATCGAACCG 59.258 45.455 0.00 0.00 29.55 4.44
676 687 2.536761 TCCTTGTTTCATCGAACCGT 57.463 45.000 0.00 0.00 0.00 4.83
677 688 2.139917 TCCTTGTTTCATCGAACCGTG 58.860 47.619 0.00 0.00 0.00 4.94
678 689 1.196808 CCTTGTTTCATCGAACCGTGG 59.803 52.381 0.00 0.00 0.00 4.94
679 690 1.871039 CTTGTTTCATCGAACCGTGGT 59.129 47.619 0.00 0.00 0.00 4.16
680 691 1.504359 TGTTTCATCGAACCGTGGTC 58.496 50.000 0.00 0.00 0.00 4.02
681 692 0.437295 GTTTCATCGAACCGTGGTCG 59.563 55.000 5.15 5.15 0.00 4.79
682 693 0.032403 TTTCATCGAACCGTGGTCGT 59.968 50.000 10.43 0.00 35.01 4.34
683 694 0.880441 TTCATCGAACCGTGGTCGTA 59.120 50.000 10.43 0.26 35.01 3.43
684 695 0.880441 TCATCGAACCGTGGTCGTAA 59.120 50.000 10.43 0.00 35.01 3.18
685 696 1.269174 TCATCGAACCGTGGTCGTAAA 59.731 47.619 10.43 0.00 35.01 2.01
686 697 2.094597 TCATCGAACCGTGGTCGTAAAT 60.095 45.455 10.43 0.00 35.01 1.40
687 698 1.981254 TCGAACCGTGGTCGTAAATC 58.019 50.000 10.43 0.00 35.01 2.17
688 699 1.269174 TCGAACCGTGGTCGTAAATCA 59.731 47.619 10.43 0.00 35.01 2.57
689 700 1.387756 CGAACCGTGGTCGTAAATCAC 59.612 52.381 3.54 0.00 35.01 3.06
690 701 1.728425 GAACCGTGGTCGTAAATCACC 59.272 52.381 0.00 0.00 35.01 4.02
691 702 0.388907 ACCGTGGTCGTAAATCACCG 60.389 55.000 0.00 0.00 35.15 4.94
692 703 1.079875 CCGTGGTCGTAAATCACCGG 61.080 60.000 0.00 0.00 35.15 5.28
693 704 1.689352 CGTGGTCGTAAATCACCGGC 61.689 60.000 0.00 0.00 35.15 6.13
694 705 0.390735 GTGGTCGTAAATCACCGGCT 60.391 55.000 0.00 0.00 35.15 5.52
695 706 0.390603 TGGTCGTAAATCACCGGCTG 60.391 55.000 0.00 0.00 35.15 4.85
696 707 0.108520 GGTCGTAAATCACCGGCTGA 60.109 55.000 0.00 5.12 0.00 4.26
697 708 0.997196 GTCGTAAATCACCGGCTGAC 59.003 55.000 0.00 0.00 0.00 3.51
698 709 0.604073 TCGTAAATCACCGGCTGACA 59.396 50.000 0.00 0.00 0.00 3.58
699 710 0.719465 CGTAAATCACCGGCTGACAC 59.281 55.000 0.00 3.69 0.00 3.67
700 711 1.803334 GTAAATCACCGGCTGACACA 58.197 50.000 0.00 0.00 0.00 3.72
701 712 2.356135 GTAAATCACCGGCTGACACAT 58.644 47.619 0.00 0.00 0.00 3.21
702 713 1.167851 AAATCACCGGCTGACACATG 58.832 50.000 0.00 0.00 0.00 3.21
703 714 1.308069 AATCACCGGCTGACACATGC 61.308 55.000 0.00 0.00 0.00 4.06
704 715 2.189191 ATCACCGGCTGACACATGCT 62.189 55.000 0.00 0.00 0.00 3.79
705 716 1.968017 CACCGGCTGACACATGCTT 60.968 57.895 0.00 0.00 0.00 3.91
706 717 1.228245 ACCGGCTGACACATGCTTT 60.228 52.632 0.00 0.00 0.00 3.51
707 718 0.036164 ACCGGCTGACACATGCTTTA 59.964 50.000 0.00 0.00 0.00 1.85
708 719 0.447801 CCGGCTGACACATGCTTTAC 59.552 55.000 0.00 0.00 0.00 2.01
709 720 1.155889 CGGCTGACACATGCTTTACA 58.844 50.000 0.00 0.00 0.00 2.41
710 721 1.739466 CGGCTGACACATGCTTTACAT 59.261 47.619 0.00 0.00 40.66 2.29
711 722 2.223112 CGGCTGACACATGCTTTACATC 60.223 50.000 0.00 0.00 36.64 3.06
712 723 2.223112 GGCTGACACATGCTTTACATCG 60.223 50.000 0.00 0.00 36.64 3.84
713 724 2.672874 GCTGACACATGCTTTACATCGA 59.327 45.455 0.00 0.00 36.64 3.59
714 725 3.484229 GCTGACACATGCTTTACATCGAC 60.484 47.826 0.00 0.00 36.64 4.20
715 726 3.658709 TGACACATGCTTTACATCGACA 58.341 40.909 0.00 0.00 36.64 4.35
716 727 4.252878 TGACACATGCTTTACATCGACAT 58.747 39.130 0.00 0.00 36.64 3.06
717 728 4.329801 TGACACATGCTTTACATCGACATC 59.670 41.667 0.00 0.00 36.64 3.06
718 729 4.507710 ACACATGCTTTACATCGACATCT 58.492 39.130 0.00 0.00 36.64 2.90
719 730 4.937620 ACACATGCTTTACATCGACATCTT 59.062 37.500 0.00 0.00 36.64 2.40
720 731 5.063944 ACACATGCTTTACATCGACATCTTC 59.936 40.000 0.00 0.00 36.64 2.87
731 742 2.273370 GACATCTTCGACGCTACCAA 57.727 50.000 0.00 0.00 0.00 3.67
732 743 2.602878 GACATCTTCGACGCTACCAAA 58.397 47.619 0.00 0.00 0.00 3.28
733 744 2.991190 GACATCTTCGACGCTACCAAAA 59.009 45.455 0.00 0.00 0.00 2.44
734 745 3.395639 ACATCTTCGACGCTACCAAAAA 58.604 40.909 0.00 0.00 0.00 1.94
735 746 3.185797 ACATCTTCGACGCTACCAAAAAC 59.814 43.478 0.00 0.00 0.00 2.43
736 747 3.102052 TCTTCGACGCTACCAAAAACT 57.898 42.857 0.00 0.00 0.00 2.66
737 748 3.460103 TCTTCGACGCTACCAAAAACTT 58.540 40.909 0.00 0.00 0.00 2.66
738 749 3.492011 TCTTCGACGCTACCAAAAACTTC 59.508 43.478 0.00 0.00 0.00 3.01
739 750 2.137523 TCGACGCTACCAAAAACTTCC 58.862 47.619 0.00 0.00 0.00 3.46
740 751 2.140717 CGACGCTACCAAAAACTTCCT 58.859 47.619 0.00 0.00 0.00 3.36
741 752 2.546789 CGACGCTACCAAAAACTTCCTT 59.453 45.455 0.00 0.00 0.00 3.36
742 753 3.002965 CGACGCTACCAAAAACTTCCTTT 59.997 43.478 0.00 0.00 0.00 3.11
743 754 4.534168 GACGCTACCAAAAACTTCCTTTC 58.466 43.478 0.00 0.00 0.00 2.62
744 755 3.002965 ACGCTACCAAAAACTTCCTTTCG 59.997 43.478 0.00 0.00 0.00 3.46
745 756 3.249080 CGCTACCAAAAACTTCCTTTCGA 59.751 43.478 0.00 0.00 0.00 3.71
746 757 4.534168 GCTACCAAAAACTTCCTTTCGAC 58.466 43.478 0.00 0.00 0.00 4.20
747 758 4.275196 GCTACCAAAAACTTCCTTTCGACT 59.725 41.667 0.00 0.00 0.00 4.18
748 759 4.895224 ACCAAAAACTTCCTTTCGACTC 57.105 40.909 0.00 0.00 0.00 3.36
749 760 4.266714 ACCAAAAACTTCCTTTCGACTCA 58.733 39.130 0.00 0.00 0.00 3.41
750 761 4.703093 ACCAAAAACTTCCTTTCGACTCAA 59.297 37.500 0.00 0.00 0.00 3.02
751 762 5.034797 CCAAAAACTTCCTTTCGACTCAAC 58.965 41.667 0.00 0.00 0.00 3.18
752 763 5.392595 CCAAAAACTTCCTTTCGACTCAACA 60.393 40.000 0.00 0.00 0.00 3.33
753 764 4.877323 AAACTTCCTTTCGACTCAACAC 57.123 40.909 0.00 0.00 0.00 3.32
754 765 3.821421 ACTTCCTTTCGACTCAACACT 57.179 42.857 0.00 0.00 0.00 3.55
755 766 4.138487 ACTTCCTTTCGACTCAACACTT 57.862 40.909 0.00 0.00 0.00 3.16
756 767 5.272283 ACTTCCTTTCGACTCAACACTTA 57.728 39.130 0.00 0.00 0.00 2.24
757 768 5.855045 ACTTCCTTTCGACTCAACACTTAT 58.145 37.500 0.00 0.00 0.00 1.73
758 769 6.289064 ACTTCCTTTCGACTCAACACTTATT 58.711 36.000 0.00 0.00 0.00 1.40
759 770 6.202954 ACTTCCTTTCGACTCAACACTTATTG 59.797 38.462 0.00 0.00 0.00 1.90
760 771 5.607477 TCCTTTCGACTCAACACTTATTGT 58.393 37.500 0.00 0.00 41.74 2.71
761 772 5.694910 TCCTTTCGACTCAACACTTATTGTC 59.305 40.000 0.00 0.00 37.51 3.18
762 773 5.696724 CCTTTCGACTCAACACTTATTGTCT 59.303 40.000 0.00 0.00 37.51 3.41
763 774 6.128795 CCTTTCGACTCAACACTTATTGTCTC 60.129 42.308 0.00 0.00 37.51 3.36
764 775 5.447624 TCGACTCAACACTTATTGTCTCA 57.552 39.130 0.00 0.00 37.51 3.27
765 776 5.838529 TCGACTCAACACTTATTGTCTCAA 58.161 37.500 0.00 0.00 37.51 3.02
766 777 6.455647 TCGACTCAACACTTATTGTCTCAAT 58.544 36.000 0.80 0.80 37.51 2.57
767 778 6.366061 TCGACTCAACACTTATTGTCTCAATG 59.634 38.462 5.40 0.00 37.51 2.82
768 779 6.401474 CGACTCAACACTTATTGTCTCAATGG 60.401 42.308 5.40 1.92 37.51 3.16
769 780 5.707298 ACTCAACACTTATTGTCTCAATGGG 59.293 40.000 5.40 1.64 37.51 4.00
770 781 5.875224 TCAACACTTATTGTCTCAATGGGA 58.125 37.500 5.40 0.00 37.51 4.37
771 782 6.484288 TCAACACTTATTGTCTCAATGGGAT 58.516 36.000 5.40 0.00 37.51 3.85
772 783 6.947733 TCAACACTTATTGTCTCAATGGGATT 59.052 34.615 5.40 0.00 37.51 3.01
773 784 7.451255 TCAACACTTATTGTCTCAATGGGATTT 59.549 33.333 5.40 0.00 37.51 2.17
774 785 7.396540 ACACTTATTGTCTCAATGGGATTTC 57.603 36.000 5.40 0.00 29.79 2.17
775 786 6.947733 ACACTTATTGTCTCAATGGGATTTCA 59.052 34.615 5.40 0.00 29.79 2.69
776 787 7.451255 ACACTTATTGTCTCAATGGGATTTCAA 59.549 33.333 5.40 0.00 29.79 2.69
777 788 8.306038 CACTTATTGTCTCAATGGGATTTCAAA 58.694 33.333 5.40 0.00 0.00 2.69
778 789 9.039165 ACTTATTGTCTCAATGGGATTTCAAAT 57.961 29.630 5.40 0.00 0.00 2.32
779 790 9.525409 CTTATTGTCTCAATGGGATTTCAAATC 57.475 33.333 0.97 0.97 0.00 2.17
780 791 5.920193 TGTCTCAATGGGATTTCAAATCC 57.080 39.130 19.73 19.73 37.47 3.01
781 792 5.331906 TGTCTCAATGGGATTTCAAATCCA 58.668 37.500 27.22 15.44 39.93 3.41
782 793 5.185635 TGTCTCAATGGGATTTCAAATCCAC 59.814 40.000 27.22 17.82 39.93 4.02
783 794 5.185635 GTCTCAATGGGATTTCAAATCCACA 59.814 40.000 27.22 21.99 39.93 4.17
784 795 5.959594 TCTCAATGGGATTTCAAATCCACAT 59.040 36.000 27.22 22.98 39.93 3.21
785 796 7.068593 GTCTCAATGGGATTTCAAATCCACATA 59.931 37.037 27.22 12.77 39.93 2.29
786 797 7.785985 TCTCAATGGGATTTCAAATCCACATAT 59.214 33.333 27.22 14.23 39.93 1.78
787 798 7.728148 TCAATGGGATTTCAAATCCACATATG 58.272 34.615 27.22 22.54 39.93 1.78
788 799 5.534207 TGGGATTTCAAATCCACATATGC 57.466 39.130 27.22 11.03 39.93 3.14
789 800 4.961099 TGGGATTTCAAATCCACATATGCA 59.039 37.500 27.22 13.28 39.93 3.96
790 801 5.163426 TGGGATTTCAAATCCACATATGCAC 60.163 40.000 27.22 9.75 39.93 4.57
791 802 5.291971 GGATTTCAAATCCACATATGCACC 58.708 41.667 22.46 0.00 38.09 5.01
792 803 5.069516 GGATTTCAAATCCACATATGCACCT 59.930 40.000 22.46 0.00 38.09 4.00
793 804 5.581126 TTTCAAATCCACATATGCACCTC 57.419 39.130 1.58 0.00 0.00 3.85
794 805 4.233632 TCAAATCCACATATGCACCTCA 57.766 40.909 1.58 0.00 0.00 3.86
795 806 3.947196 TCAAATCCACATATGCACCTCAC 59.053 43.478 1.58 0.00 0.00 3.51
796 807 3.650281 AATCCACATATGCACCTCACA 57.350 42.857 1.58 0.00 0.00 3.58
797 808 2.401583 TCCACATATGCACCTCACAC 57.598 50.000 1.58 0.00 0.00 3.82
798 809 1.627834 TCCACATATGCACCTCACACA 59.372 47.619 1.58 0.00 0.00 3.72
799 810 2.039613 TCCACATATGCACCTCACACAA 59.960 45.455 1.58 0.00 0.00 3.33
800 811 2.162208 CCACATATGCACCTCACACAAC 59.838 50.000 1.58 0.00 0.00 3.32
801 812 2.162208 CACATATGCACCTCACACAACC 59.838 50.000 1.58 0.00 0.00 3.77
802 813 2.224744 ACATATGCACCTCACACAACCA 60.225 45.455 1.58 0.00 0.00 3.67
803 814 1.890876 TATGCACCTCACACAACCAC 58.109 50.000 0.00 0.00 0.00 4.16
804 815 0.183492 ATGCACCTCACACAACCACT 59.817 50.000 0.00 0.00 0.00 4.00
805 816 0.463654 TGCACCTCACACAACCACTC 60.464 55.000 0.00 0.00 0.00 3.51
806 817 1.498865 GCACCTCACACAACCACTCG 61.499 60.000 0.00 0.00 0.00 4.18
807 818 0.880278 CACCTCACACAACCACTCGG 60.880 60.000 0.00 0.00 38.77 4.63
818 829 2.930826 ACCACTCGGTTCATCAAAGT 57.069 45.000 0.00 0.00 46.31 2.66
819 830 3.208747 ACCACTCGGTTCATCAAAGTT 57.791 42.857 0.00 0.00 46.31 2.66
820 831 2.878406 ACCACTCGGTTCATCAAAGTTG 59.122 45.455 0.00 0.00 46.31 3.16
821 832 3.138304 CCACTCGGTTCATCAAAGTTGA 58.862 45.455 0.00 0.00 42.14 3.18
822 833 3.563808 CCACTCGGTTCATCAAAGTTGAA 59.436 43.478 0.00 0.00 41.13 2.69
823 834 6.936665 ACCACTCGGTTCATCAAAGTTGAAC 61.937 44.000 10.83 10.83 46.31 3.18
833 844 7.111247 TCATCAAAGTTGAACATTTCTTGGT 57.889 32.000 0.00 0.00 41.13 3.67
834 845 6.979817 TCATCAAAGTTGAACATTTCTTGGTG 59.020 34.615 0.00 0.36 41.13 4.17
835 846 5.659463 TCAAAGTTGAACATTTCTTGGTGG 58.341 37.500 0.00 0.00 33.55 4.61
836 847 5.420421 TCAAAGTTGAACATTTCTTGGTGGA 59.580 36.000 0.00 0.00 33.55 4.02
837 848 5.930837 AAGTTGAACATTTCTTGGTGGAA 57.069 34.783 0.00 0.00 0.00 3.53
838 849 6.484364 AAGTTGAACATTTCTTGGTGGAAT 57.516 33.333 0.00 0.00 0.00 3.01
839 850 7.595819 AAGTTGAACATTTCTTGGTGGAATA 57.404 32.000 0.00 0.00 0.00 1.75
840 851 7.781324 AGTTGAACATTTCTTGGTGGAATAT 57.219 32.000 0.00 0.00 0.00 1.28
841 852 7.605449 AGTTGAACATTTCTTGGTGGAATATG 58.395 34.615 0.00 0.00 0.00 1.78
842 853 7.233348 AGTTGAACATTTCTTGGTGGAATATGT 59.767 33.333 0.00 0.00 33.22 2.29
843 854 7.537596 TGAACATTTCTTGGTGGAATATGTT 57.462 32.000 0.00 0.00 38.28 2.71
844 855 7.961351 TGAACATTTCTTGGTGGAATATGTTT 58.039 30.769 0.00 0.00 37.24 2.83
845 856 7.871973 TGAACATTTCTTGGTGGAATATGTTTG 59.128 33.333 0.00 0.00 37.24 2.93
846 857 7.537596 ACATTTCTTGGTGGAATATGTTTGA 57.462 32.000 0.00 0.00 30.63 2.69
847 858 7.961351 ACATTTCTTGGTGGAATATGTTTGAA 58.039 30.769 0.00 0.00 30.63 2.69
848 859 8.428063 ACATTTCTTGGTGGAATATGTTTGAAA 58.572 29.630 0.00 0.00 30.63 2.69
849 860 9.270640 CATTTCTTGGTGGAATATGTTTGAAAA 57.729 29.630 0.00 0.00 0.00 2.29
851 862 9.844257 TTTCTTGGTGGAATATGTTTGAAAATT 57.156 25.926 0.00 0.00 0.00 1.82
852 863 8.830201 TCTTGGTGGAATATGTTTGAAAATTG 57.170 30.769 0.00 0.00 0.00 2.32
853 864 8.428063 TCTTGGTGGAATATGTTTGAAAATTGT 58.572 29.630 0.00 0.00 0.00 2.71
854 865 8.970859 TTGGTGGAATATGTTTGAAAATTGTT 57.029 26.923 0.00 0.00 0.00 2.83
855 866 8.600449 TGGTGGAATATGTTTGAAAATTGTTC 57.400 30.769 0.00 0.00 0.00 3.18
856 867 7.383572 TGGTGGAATATGTTTGAAAATTGTTCG 59.616 33.333 0.00 0.00 0.00 3.95
857 868 7.596995 GGTGGAATATGTTTGAAAATTGTTCGA 59.403 33.333 0.00 0.00 0.00 3.71
858 869 8.638565 GTGGAATATGTTTGAAAATTGTTCGAG 58.361 33.333 0.00 0.00 0.00 4.04
859 870 7.812191 TGGAATATGTTTGAAAATTGTTCGAGG 59.188 33.333 0.00 0.00 0.00 4.63
860 871 7.201435 GGAATATGTTTGAAAATTGTTCGAGGC 60.201 37.037 0.00 0.00 0.00 4.70
861 872 3.367607 TGTTTGAAAATTGTTCGAGGCG 58.632 40.909 0.00 0.00 0.00 5.52
862 873 3.181495 TGTTTGAAAATTGTTCGAGGCGT 60.181 39.130 0.00 0.00 0.00 5.68
863 874 2.679355 TGAAAATTGTTCGAGGCGTG 57.321 45.000 0.00 0.00 0.00 5.34
864 875 2.214347 TGAAAATTGTTCGAGGCGTGA 58.786 42.857 0.00 0.00 0.00 4.35
865 876 2.811431 TGAAAATTGTTCGAGGCGTGAT 59.189 40.909 0.00 0.00 0.00 3.06
866 877 3.997681 TGAAAATTGTTCGAGGCGTGATA 59.002 39.130 0.00 0.00 0.00 2.15
867 878 4.634004 TGAAAATTGTTCGAGGCGTGATAT 59.366 37.500 0.00 0.00 0.00 1.63
868 879 4.795970 AAATTGTTCGAGGCGTGATATC 57.204 40.909 0.00 0.00 0.00 1.63
869 880 2.218953 TTGTTCGAGGCGTGATATCC 57.781 50.000 0.00 0.00 0.00 2.59
989 1005 1.559219 TCGATCCCTGCAATCTTTCCA 59.441 47.619 0.00 0.00 0.00 3.53
992 1010 0.776810 TCCCTGCAATCTTTCCACCA 59.223 50.000 0.00 0.00 0.00 4.17
1285 1306 3.053693 CCCTGTTGGTCCCAATAGATTCA 60.054 47.826 20.55 4.88 44.43 2.57
1338 1359 0.251653 GGATGATGATGCATGGGCCT 60.252 55.000 2.46 0.00 40.13 5.19
1345 1366 2.024590 GATGCATGGGCCTTGGCTTC 62.025 60.000 19.82 15.48 40.13 3.86
1525 1546 3.175438 TCCTGGAGATGAGACTGAACA 57.825 47.619 0.00 0.00 0.00 3.18
1534 1555 1.486310 TGAGACTGAACAGCAACACCT 59.514 47.619 1.46 0.00 0.00 4.00
1677 1699 0.183492 TCTGCAAGTTCTGTGGCCTT 59.817 50.000 3.32 0.00 33.76 4.35
1855 1877 2.691409 CAAAGCTCCGTTGGATCCTA 57.309 50.000 14.23 1.56 0.00 2.94
1916 1938 2.238646 CCAGCCCACCTAAGTTACATCA 59.761 50.000 0.00 0.00 0.00 3.07
1972 1994 8.615360 AAAGAGGCTCAATATGGATATAGCTA 57.385 34.615 18.26 0.00 29.42 3.32
2046 2068 2.127708 GATGGTAGTGGGAAGGATGGT 58.872 52.381 0.00 0.00 0.00 3.55
2142 2164 2.607750 ATATCGGCGGCCTCCCAT 60.608 61.111 18.34 0.66 0.00 4.00
2468 2785 0.678048 GGCACTTCTTGGCGAGGAAT 60.678 55.000 0.97 0.00 41.69 3.01
2587 2904 3.062234 CGGAGATTTTAACGAGGCACTTC 59.938 47.826 0.00 0.00 41.55 3.01
2761 3078 2.358615 GACTGGACCGTGCATGCA 60.359 61.111 18.46 18.46 0.00 3.96
2812 3129 2.109126 GCGAAGGTGGTCCATCTGC 61.109 63.158 5.09 1.86 35.89 4.26
2820 3138 1.384643 GGTCCATCTGCCTACCCCT 60.385 63.158 0.00 0.00 0.00 4.79
2835 3153 0.324943 CCCCTTGTTCGGATCACTGT 59.675 55.000 0.00 0.00 0.00 3.55
3113 3431 1.204941 GTTACAGATGACGGGCTCAGT 59.795 52.381 0.00 0.00 30.20 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.571216 CCGTCGTGTGGGAAGTCCT 61.571 63.158 0.00 0.00 36.20 3.85
8 9 2.048503 CCGTCGTGTGGGAAGTCC 60.049 66.667 0.00 0.00 0.00 3.85
10 11 2.420043 CACCGTCGTGTGGGAAGT 59.580 61.111 6.09 0.00 35.10 3.01
17 18 1.108727 TACTTCCACCACCGTCGTGT 61.109 55.000 0.00 0.00 38.41 4.49
23 24 1.893801 AGAGAACTACTTCCACCACCG 59.106 52.381 0.00 0.00 0.00 4.94
33 34 1.313812 CCGTGCGGGAGAGAACTACT 61.314 60.000 2.15 0.00 38.47 2.57
36 37 4.070552 GCCGTGCGGGAGAGAACT 62.071 66.667 12.82 0.00 38.47 3.01
49 50 4.827087 CAGCAGCATCGAGGCCGT 62.827 66.667 19.85 0.00 37.05 5.68
54 55 1.521010 CAGGGACAGCAGCATCGAG 60.521 63.158 0.00 0.00 0.00 4.04
55 56 1.830587 AACAGGGACAGCAGCATCGA 61.831 55.000 0.00 0.00 0.00 3.59
71 73 2.288152 GGAAATTGAAGCGCTGGAAACA 60.288 45.455 12.58 3.92 39.59 2.83
72 74 2.328473 GGAAATTGAAGCGCTGGAAAC 58.672 47.619 12.58 0.96 0.00 2.78
77 79 0.179189 GACGGGAAATTGAAGCGCTG 60.179 55.000 12.58 0.00 0.00 5.18
78 80 1.305930 GGACGGGAAATTGAAGCGCT 61.306 55.000 2.64 2.64 0.00 5.92
84 86 1.485066 GCCTAGAGGACGGGAAATTGA 59.515 52.381 0.00 0.00 37.39 2.57
86 88 0.837940 GGCCTAGAGGACGGGAAATT 59.162 55.000 0.00 0.00 37.39 1.82
87 89 2.529312 GGCCTAGAGGACGGGAAAT 58.471 57.895 0.00 0.00 37.39 2.17
94 96 1.622811 CCATCATGAGGCCTAGAGGAC 59.377 57.143 4.42 0.00 46.16 3.85
108 110 4.020751 CCGTCTCATTGAGGATACCATCAT 60.021 45.833 13.59 0.00 32.72 2.45
115 117 2.103094 CCTTGCCGTCTCATTGAGGATA 59.897 50.000 13.59 0.00 32.72 2.59
116 118 1.134280 CCTTGCCGTCTCATTGAGGAT 60.134 52.381 13.59 0.00 32.72 3.24
117 119 0.250234 CCTTGCCGTCTCATTGAGGA 59.750 55.000 13.59 0.00 32.72 3.71
118 120 0.745845 CCCTTGCCGTCTCATTGAGG 60.746 60.000 13.59 0.02 0.00 3.86
134 136 0.991920 CCATGGACTTACACCACCCT 59.008 55.000 5.56 0.00 40.36 4.34
137 139 1.821216 CCACCATGGACTTACACCAC 58.179 55.000 21.47 0.00 40.96 4.16
140 142 1.644786 GCGCCACCATGGACTTACAC 61.645 60.000 21.47 0.00 40.96 2.90
141 143 1.376683 GCGCCACCATGGACTTACA 60.377 57.895 21.47 0.00 40.96 2.41
142 144 0.748005 ATGCGCCACCATGGACTTAC 60.748 55.000 21.47 5.29 40.96 2.34
147 150 2.035469 AACATGCGCCACCATGGA 59.965 55.556 21.47 0.00 45.29 3.41
150 153 2.283101 ACCAACATGCGCCACCAT 60.283 55.556 4.18 0.00 0.00 3.55
159 162 2.282110 TCGCCACCCACCAACATG 60.282 61.111 0.00 0.00 0.00 3.21
179 182 1.470098 CAATCCGAAGCCTTCCAACTG 59.530 52.381 0.00 0.00 0.00 3.16
180 183 1.614317 CCAATCCGAAGCCTTCCAACT 60.614 52.381 0.00 0.00 0.00 3.16
182 185 0.404040 ACCAATCCGAAGCCTTCCAA 59.596 50.000 0.00 0.00 0.00 3.53
186 189 1.078426 CCGACCAATCCGAAGCCTT 60.078 57.895 0.00 0.00 0.00 4.35
187 190 2.584608 CCGACCAATCCGAAGCCT 59.415 61.111 0.00 0.00 0.00 4.58
192 195 1.952102 GCACTACCCGACCAATCCGA 61.952 60.000 0.00 0.00 0.00 4.55
198 201 1.228769 AGACAGCACTACCCGACCA 60.229 57.895 0.00 0.00 0.00 4.02
201 204 1.982395 CCCAGACAGCACTACCCGA 60.982 63.158 0.00 0.00 0.00 5.14
205 208 1.376037 GCACCCCAGACAGCACTAC 60.376 63.158 0.00 0.00 0.00 2.73
211 214 1.483595 TTCTCCTGCACCCCAGACAG 61.484 60.000 0.00 0.00 44.64 3.51
214 217 0.620556 GATTTCTCCTGCACCCCAGA 59.379 55.000 0.00 0.00 44.64 3.86
215 218 0.394899 GGATTTCTCCTGCACCCCAG 60.395 60.000 0.00 0.00 38.65 4.45
224 227 1.208165 AACCGGCAGGGATTTCTCCT 61.208 55.000 8.08 0.00 43.47 3.69
275 278 2.045045 CAGGAAGGAATGGCGGCA 60.045 61.111 16.34 16.34 0.00 5.69
277 280 2.785868 CTTCAGGAAGGAATGGCGG 58.214 57.895 1.01 0.00 34.87 6.13
294 297 0.696501 ATGGGTAAAACTGACGCCCT 59.303 50.000 0.00 0.00 39.97 5.19
301 304 1.357761 AGTGGGGGATGGGTAAAACTG 59.642 52.381 0.00 0.00 0.00 3.16
302 305 1.768265 AGTGGGGGATGGGTAAAACT 58.232 50.000 0.00 0.00 0.00 2.66
305 308 1.004436 GGAAGTGGGGGATGGGTAAA 58.996 55.000 0.00 0.00 0.00 2.01
316 319 4.760047 CACGCGGAGGGAAGTGGG 62.760 72.222 12.47 0.00 46.37 4.61
335 338 1.633432 CATGTCCTAGTGTTTCCCCCA 59.367 52.381 0.00 0.00 0.00 4.96
365 368 0.455815 ATGTGACGCTGACGATGCTA 59.544 50.000 0.00 0.00 43.93 3.49
369 372 2.370281 AGAAATGTGACGCTGACGAT 57.630 45.000 0.00 0.00 43.93 3.73
376 383 4.340894 TGCTCAATAAGAAATGTGACGC 57.659 40.909 0.00 0.00 0.00 5.19
396 403 2.400798 CGCGTACCAAGCAGCATG 59.599 61.111 0.00 0.00 40.87 4.06
397 404 2.819595 CCGCGTACCAAGCAGCAT 60.820 61.111 4.92 0.00 34.19 3.79
417 425 1.961277 CACACACCAAGGCTCCGAC 60.961 63.158 0.00 0.00 0.00 4.79
469 478 1.554392 CTCGACAAAGCTCGGATGAG 58.446 55.000 0.00 0.00 45.49 2.90
484 493 1.954146 GGCAACAACGACAGCTCGA 60.954 57.895 1.98 0.00 43.06 4.04
529 540 2.294791 CTGGGGCGAACAACACATTAAA 59.705 45.455 0.00 0.00 0.00 1.52
542 553 2.196997 AATAGCAACAGCTGGGGCGA 62.197 55.000 19.93 16.96 44.37 5.54
552 563 3.190327 CCAACACCGATCAAATAGCAACA 59.810 43.478 0.00 0.00 0.00 3.33
556 567 4.156008 AGAAACCAACACCGATCAAATAGC 59.844 41.667 0.00 0.00 0.00 2.97
558 569 6.642707 AAAGAAACCAACACCGATCAAATA 57.357 33.333 0.00 0.00 0.00 1.40
559 570 5.529581 AAAGAAACCAACACCGATCAAAT 57.470 34.783 0.00 0.00 0.00 2.32
561 572 4.158764 ACAAAAGAAACCAACACCGATCAA 59.841 37.500 0.00 0.00 0.00 2.57
562 573 3.697045 ACAAAAGAAACCAACACCGATCA 59.303 39.130 0.00 0.00 0.00 2.92
563 574 4.041723 CACAAAAGAAACCAACACCGATC 58.958 43.478 0.00 0.00 0.00 3.69
564 575 3.445805 ACACAAAAGAAACCAACACCGAT 59.554 39.130 0.00 0.00 0.00 4.18
565 576 2.820787 ACACAAAAGAAACCAACACCGA 59.179 40.909 0.00 0.00 0.00 4.69
566 577 3.224884 ACACAAAAGAAACCAACACCG 57.775 42.857 0.00 0.00 0.00 4.94
567 578 6.035542 CACATTACACAAAAGAAACCAACACC 59.964 38.462 0.00 0.00 0.00 4.16
568 579 6.035542 CCACATTACACAAAAGAAACCAACAC 59.964 38.462 0.00 0.00 0.00 3.32
569 580 6.102663 CCACATTACACAAAAGAAACCAACA 58.897 36.000 0.00 0.00 0.00 3.33
570 581 6.035542 CACCACATTACACAAAAGAAACCAAC 59.964 38.462 0.00 0.00 0.00 3.77
571 582 6.102663 CACCACATTACACAAAAGAAACCAA 58.897 36.000 0.00 0.00 0.00 3.67
572 583 5.186021 ACACCACATTACACAAAAGAAACCA 59.814 36.000 0.00 0.00 0.00 3.67
573 584 5.518487 CACACCACATTACACAAAAGAAACC 59.482 40.000 0.00 0.00 0.00 3.27
574 585 6.326375 TCACACCACATTACACAAAAGAAAC 58.674 36.000 0.00 0.00 0.00 2.78
575 586 6.151985 ACTCACACCACATTACACAAAAGAAA 59.848 34.615 0.00 0.00 0.00 2.52
576 587 5.650266 ACTCACACCACATTACACAAAAGAA 59.350 36.000 0.00 0.00 0.00 2.52
577 588 5.189928 ACTCACACCACATTACACAAAAGA 58.810 37.500 0.00 0.00 0.00 2.52
578 589 5.499139 ACTCACACCACATTACACAAAAG 57.501 39.130 0.00 0.00 0.00 2.27
579 590 5.906113 AACTCACACCACATTACACAAAA 57.094 34.783 0.00 0.00 0.00 2.44
580 591 6.350103 TCTAACTCACACCACATTACACAAA 58.650 36.000 0.00 0.00 0.00 2.83
581 592 5.919755 TCTAACTCACACCACATTACACAA 58.080 37.500 0.00 0.00 0.00 3.33
582 593 5.303333 TCTCTAACTCACACCACATTACACA 59.697 40.000 0.00 0.00 0.00 3.72
583 594 5.779922 TCTCTAACTCACACCACATTACAC 58.220 41.667 0.00 0.00 0.00 2.90
584 595 6.605471 ATCTCTAACTCACACCACATTACA 57.395 37.500 0.00 0.00 0.00 2.41
585 596 7.997482 TCTATCTCTAACTCACACCACATTAC 58.003 38.462 0.00 0.00 0.00 1.89
586 597 8.467598 GTTCTATCTCTAACTCACACCACATTA 58.532 37.037 0.00 0.00 0.00 1.90
587 598 7.039011 TGTTCTATCTCTAACTCACACCACATT 60.039 37.037 0.00 0.00 0.00 2.71
588 599 6.437477 TGTTCTATCTCTAACTCACACCACAT 59.563 38.462 0.00 0.00 0.00 3.21
589 600 5.773176 TGTTCTATCTCTAACTCACACCACA 59.227 40.000 0.00 0.00 0.00 4.17
590 601 6.268825 TGTTCTATCTCTAACTCACACCAC 57.731 41.667 0.00 0.00 0.00 4.16
591 602 6.663523 TGATGTTCTATCTCTAACTCACACCA 59.336 38.462 0.00 0.00 0.00 4.17
592 603 7.101652 TGATGTTCTATCTCTAACTCACACC 57.898 40.000 0.00 0.00 0.00 4.16
593 604 9.593134 AAATGATGTTCTATCTCTAACTCACAC 57.407 33.333 0.00 0.00 0.00 3.82
594 605 9.809096 GAAATGATGTTCTATCTCTAACTCACA 57.191 33.333 0.00 0.00 0.00 3.58
614 625 9.681692 CACATGTGAAGTTTTTCATAGAAATGA 57.318 29.630 21.64 0.00 44.62 2.57
615 626 8.430063 GCACATGTGAAGTTTTTCATAGAAATG 58.570 33.333 29.80 0.00 44.62 2.32
616 627 7.599998 GGCACATGTGAAGTTTTTCATAGAAAT 59.400 33.333 29.80 0.00 44.62 2.17
617 628 6.922957 GGCACATGTGAAGTTTTTCATAGAAA 59.077 34.615 29.80 0.00 44.62 2.52
618 629 6.446318 GGCACATGTGAAGTTTTTCATAGAA 58.554 36.000 29.80 0.00 44.62 2.10
619 630 5.048083 GGGCACATGTGAAGTTTTTCATAGA 60.048 40.000 29.80 0.00 44.62 1.98
620 631 5.047802 AGGGCACATGTGAAGTTTTTCATAG 60.048 40.000 29.80 0.00 44.62 2.23
621 632 4.832266 AGGGCACATGTGAAGTTTTTCATA 59.168 37.500 29.80 0.00 44.62 2.15
622 633 3.642848 AGGGCACATGTGAAGTTTTTCAT 59.357 39.130 29.80 2.67 44.62 2.57
623 634 3.030291 AGGGCACATGTGAAGTTTTTCA 58.970 40.909 29.80 0.00 40.92 2.69
624 635 3.733443 AGGGCACATGTGAAGTTTTTC 57.267 42.857 29.80 8.58 0.00 2.29
625 636 3.490761 CGAAGGGCACATGTGAAGTTTTT 60.491 43.478 29.80 12.98 0.00 1.94
626 637 2.034558 CGAAGGGCACATGTGAAGTTTT 59.965 45.455 29.80 14.32 0.00 2.43
627 638 1.608590 CGAAGGGCACATGTGAAGTTT 59.391 47.619 29.80 16.00 0.00 2.66
628 639 1.238439 CGAAGGGCACATGTGAAGTT 58.762 50.000 29.80 17.04 0.00 2.66
629 640 0.108585 ACGAAGGGCACATGTGAAGT 59.891 50.000 29.80 14.64 0.00 3.01
630 641 2.093306 TACGAAGGGCACATGTGAAG 57.907 50.000 29.80 14.05 0.00 3.02
631 642 2.550606 GTTTACGAAGGGCACATGTGAA 59.449 45.455 29.80 9.06 0.00 3.18
632 643 2.147958 GTTTACGAAGGGCACATGTGA 58.852 47.619 29.80 2.48 0.00 3.58
633 644 1.876799 TGTTTACGAAGGGCACATGTG 59.123 47.619 21.83 21.83 0.00 3.21
634 645 2.264005 TGTTTACGAAGGGCACATGT 57.736 45.000 0.00 0.00 0.00 3.21
635 646 2.292016 TGTTGTTTACGAAGGGCACATG 59.708 45.455 0.00 0.00 0.00 3.21
636 647 2.577700 TGTTGTTTACGAAGGGCACAT 58.422 42.857 0.00 0.00 0.00 3.21
637 648 2.039818 TGTTGTTTACGAAGGGCACA 57.960 45.000 0.00 0.00 0.00 4.57
638 649 2.095415 GGATGTTGTTTACGAAGGGCAC 60.095 50.000 0.00 0.00 0.00 5.01
639 650 2.156098 GGATGTTGTTTACGAAGGGCA 58.844 47.619 0.00 0.00 0.00 5.36
640 651 2.433436 AGGATGTTGTTTACGAAGGGC 58.567 47.619 0.00 0.00 0.00 5.19
641 652 3.818773 ACAAGGATGTTGTTTACGAAGGG 59.181 43.478 0.00 0.00 35.91 3.95
654 665 2.742053 CGGTTCGATGAAACAAGGATGT 59.258 45.455 0.00 0.00 43.14 3.06
655 666 2.742053 ACGGTTCGATGAAACAAGGATG 59.258 45.455 0.00 0.00 0.00 3.51
656 667 2.742053 CACGGTTCGATGAAACAAGGAT 59.258 45.455 0.00 0.00 0.00 3.24
657 668 2.139917 CACGGTTCGATGAAACAAGGA 58.860 47.619 0.00 0.00 0.00 3.36
658 669 1.196808 CCACGGTTCGATGAAACAAGG 59.803 52.381 0.00 0.00 0.00 3.61
659 670 1.871039 ACCACGGTTCGATGAAACAAG 59.129 47.619 0.00 0.00 0.00 3.16
660 671 1.868498 GACCACGGTTCGATGAAACAA 59.132 47.619 0.00 0.00 0.00 2.83
661 672 1.504359 GACCACGGTTCGATGAAACA 58.496 50.000 0.00 0.00 0.00 2.83
662 673 0.437295 CGACCACGGTTCGATGAAAC 59.563 55.000 0.00 0.00 35.72 2.78
663 674 0.032403 ACGACCACGGTTCGATGAAA 59.968 50.000 9.03 0.00 44.46 2.69
664 675 0.880441 TACGACCACGGTTCGATGAA 59.120 50.000 9.03 0.00 44.46 2.57
665 676 0.880441 TTACGACCACGGTTCGATGA 59.120 50.000 9.03 0.00 44.46 2.92
666 677 1.700523 TTTACGACCACGGTTCGATG 58.299 50.000 9.03 0.00 44.46 3.84
667 678 2.094597 TGATTTACGACCACGGTTCGAT 60.095 45.455 9.03 0.00 44.46 3.59
668 679 1.269174 TGATTTACGACCACGGTTCGA 59.731 47.619 9.03 0.00 44.46 3.71
669 680 1.387756 GTGATTTACGACCACGGTTCG 59.612 52.381 0.95 0.95 44.46 3.95
670 681 1.728425 GGTGATTTACGACCACGGTTC 59.272 52.381 0.00 0.00 44.46 3.62
671 682 1.799544 GGTGATTTACGACCACGGTT 58.200 50.000 0.00 0.00 44.46 4.44
672 683 0.388907 CGGTGATTTACGACCACGGT 60.389 55.000 0.00 0.00 44.46 4.83
673 684 1.079875 CCGGTGATTTACGACCACGG 61.080 60.000 0.00 0.00 44.46 4.94
674 685 1.689352 GCCGGTGATTTACGACCACG 61.689 60.000 1.90 0.00 45.75 4.94
675 686 0.390735 AGCCGGTGATTTACGACCAC 60.391 55.000 1.90 0.00 31.97 4.16
676 687 0.390603 CAGCCGGTGATTTACGACCA 60.391 55.000 1.90 0.00 31.97 4.02
677 688 0.108520 TCAGCCGGTGATTTACGACC 60.109 55.000 1.90 0.00 0.00 4.79
678 689 0.997196 GTCAGCCGGTGATTTACGAC 59.003 55.000 1.90 0.00 37.56 4.34
679 690 0.604073 TGTCAGCCGGTGATTTACGA 59.396 50.000 1.90 0.00 37.56 3.43
680 691 0.719465 GTGTCAGCCGGTGATTTACG 59.281 55.000 1.90 0.00 37.56 3.18
681 692 1.803334 TGTGTCAGCCGGTGATTTAC 58.197 50.000 1.90 7.50 37.56 2.01
682 693 2.355197 CATGTGTCAGCCGGTGATTTA 58.645 47.619 1.90 0.00 37.56 1.40
683 694 1.167851 CATGTGTCAGCCGGTGATTT 58.832 50.000 1.90 0.00 37.56 2.17
684 695 1.308069 GCATGTGTCAGCCGGTGATT 61.308 55.000 1.90 0.00 37.56 2.57
685 696 1.746615 GCATGTGTCAGCCGGTGAT 60.747 57.895 1.90 0.00 37.56 3.06
686 697 2.358615 GCATGTGTCAGCCGGTGA 60.359 61.111 1.90 2.59 0.00 4.02
687 698 1.518056 AAAGCATGTGTCAGCCGGTG 61.518 55.000 1.90 0.00 0.00 4.94
688 699 0.036164 TAAAGCATGTGTCAGCCGGT 59.964 50.000 1.90 0.00 0.00 5.28
689 700 0.447801 GTAAAGCATGTGTCAGCCGG 59.552 55.000 0.00 0.00 0.00 6.13
690 701 1.155889 TGTAAAGCATGTGTCAGCCG 58.844 50.000 0.00 0.00 0.00 5.52
691 702 2.223112 CGATGTAAAGCATGTGTCAGCC 60.223 50.000 0.00 0.00 38.06 4.85
692 703 2.672874 TCGATGTAAAGCATGTGTCAGC 59.327 45.455 0.00 0.00 38.06 4.26
693 704 3.679502 TGTCGATGTAAAGCATGTGTCAG 59.320 43.478 0.00 0.00 38.06 3.51
694 705 3.658709 TGTCGATGTAAAGCATGTGTCA 58.341 40.909 0.00 0.00 38.06 3.58
695 706 4.568359 AGATGTCGATGTAAAGCATGTGTC 59.432 41.667 0.00 0.00 38.06 3.67
696 707 4.507710 AGATGTCGATGTAAAGCATGTGT 58.492 39.130 0.00 0.00 38.06 3.72
697 708 5.475273 AAGATGTCGATGTAAAGCATGTG 57.525 39.130 0.00 0.00 38.06 3.21
698 709 5.725110 GAAGATGTCGATGTAAAGCATGT 57.275 39.130 0.00 0.00 38.06 3.21
712 723 2.273370 TTGGTAGCGTCGAAGATGTC 57.727 50.000 1.37 0.00 46.97 3.06
713 724 2.736144 TTTGGTAGCGTCGAAGATGT 57.264 45.000 1.37 0.00 46.97 3.06
715 726 3.660865 AGTTTTTGGTAGCGTCGAAGAT 58.339 40.909 1.37 0.00 40.67 2.40
716 727 3.102052 AGTTTTTGGTAGCGTCGAAGA 57.898 42.857 1.37 0.00 0.00 2.87
717 728 3.363673 GGAAGTTTTTGGTAGCGTCGAAG 60.364 47.826 0.00 0.00 0.00 3.79
718 729 2.545106 GGAAGTTTTTGGTAGCGTCGAA 59.455 45.455 0.00 0.00 0.00 3.71
719 730 2.137523 GGAAGTTTTTGGTAGCGTCGA 58.862 47.619 0.00 0.00 0.00 4.20
720 731 2.140717 AGGAAGTTTTTGGTAGCGTCG 58.859 47.619 0.00 0.00 0.00 5.12
721 732 4.534168 GAAAGGAAGTTTTTGGTAGCGTC 58.466 43.478 0.00 0.00 0.00 5.19
722 733 3.002965 CGAAAGGAAGTTTTTGGTAGCGT 59.997 43.478 0.00 0.00 0.00 5.07
723 734 3.249080 TCGAAAGGAAGTTTTTGGTAGCG 59.751 43.478 0.00 0.00 0.00 4.26
724 735 4.275196 AGTCGAAAGGAAGTTTTTGGTAGC 59.725 41.667 0.00 0.00 0.00 3.58
725 736 5.526111 TGAGTCGAAAGGAAGTTTTTGGTAG 59.474 40.000 0.00 0.00 0.00 3.18
726 737 5.430007 TGAGTCGAAAGGAAGTTTTTGGTA 58.570 37.500 0.00 0.00 0.00 3.25
727 738 4.266714 TGAGTCGAAAGGAAGTTTTTGGT 58.733 39.130 0.00 0.00 0.00 3.67
728 739 4.893424 TGAGTCGAAAGGAAGTTTTTGG 57.107 40.909 0.00 0.00 0.00 3.28
729 740 5.511729 GTGTTGAGTCGAAAGGAAGTTTTTG 59.488 40.000 0.00 0.00 0.00 2.44
730 741 5.414765 AGTGTTGAGTCGAAAGGAAGTTTTT 59.585 36.000 0.00 0.00 0.00 1.94
731 742 4.941873 AGTGTTGAGTCGAAAGGAAGTTTT 59.058 37.500 0.00 0.00 0.00 2.43
732 743 4.514401 AGTGTTGAGTCGAAAGGAAGTTT 58.486 39.130 0.00 0.00 0.00 2.66
733 744 4.138487 AGTGTTGAGTCGAAAGGAAGTT 57.862 40.909 0.00 0.00 0.00 2.66
734 745 3.821421 AGTGTTGAGTCGAAAGGAAGT 57.179 42.857 0.00 0.00 0.00 3.01
735 746 6.202954 ACAATAAGTGTTGAGTCGAAAGGAAG 59.797 38.462 0.00 0.00 37.01 3.46
736 747 6.053005 ACAATAAGTGTTGAGTCGAAAGGAA 58.947 36.000 0.00 0.00 37.01 3.36
737 748 5.607477 ACAATAAGTGTTGAGTCGAAAGGA 58.393 37.500 0.00 0.00 37.01 3.36
738 749 5.696724 AGACAATAAGTGTTGAGTCGAAAGG 59.303 40.000 0.00 0.00 41.96 3.11
739 750 6.420903 TGAGACAATAAGTGTTGAGTCGAAAG 59.579 38.462 0.00 0.00 41.96 2.62
740 751 6.277605 TGAGACAATAAGTGTTGAGTCGAAA 58.722 36.000 0.00 0.00 41.96 3.46
741 752 5.838529 TGAGACAATAAGTGTTGAGTCGAA 58.161 37.500 0.00 0.00 41.96 3.71
742 753 5.447624 TGAGACAATAAGTGTTGAGTCGA 57.552 39.130 0.00 0.00 41.96 4.20
743 754 6.401474 CCATTGAGACAATAAGTGTTGAGTCG 60.401 42.308 0.00 0.00 41.96 4.18
744 755 6.128172 CCCATTGAGACAATAAGTGTTGAGTC 60.128 42.308 0.00 0.00 41.96 3.36
745 756 5.707298 CCCATTGAGACAATAAGTGTTGAGT 59.293 40.000 0.00 0.00 41.96 3.41
746 757 5.939883 TCCCATTGAGACAATAAGTGTTGAG 59.060 40.000 0.00 0.00 41.96 3.02
747 758 5.875224 TCCCATTGAGACAATAAGTGTTGA 58.125 37.500 0.00 0.00 41.96 3.18
748 759 6.764308 ATCCCATTGAGACAATAAGTGTTG 57.236 37.500 0.00 0.00 41.96 3.33
749 760 7.451255 TGAAATCCCATTGAGACAATAAGTGTT 59.549 33.333 0.00 0.00 41.96 3.32
750 761 6.947733 TGAAATCCCATTGAGACAATAAGTGT 59.052 34.615 0.00 0.00 45.74 3.55
751 762 7.395190 TGAAATCCCATTGAGACAATAAGTG 57.605 36.000 0.00 0.00 0.00 3.16
752 763 8.421249 TTTGAAATCCCATTGAGACAATAAGT 57.579 30.769 0.00 0.00 0.00 2.24
753 764 9.525409 GATTTGAAATCCCATTGAGACAATAAG 57.475 33.333 6.65 0.00 0.00 1.73
754 765 8.477256 GGATTTGAAATCCCATTGAGACAATAA 58.523 33.333 23.25 0.00 32.09 1.40
755 766 7.618907 TGGATTTGAAATCCCATTGAGACAATA 59.381 33.333 28.68 7.43 37.40 1.90
756 767 6.441284 TGGATTTGAAATCCCATTGAGACAAT 59.559 34.615 28.68 0.00 37.40 2.71
757 768 5.779260 TGGATTTGAAATCCCATTGAGACAA 59.221 36.000 28.68 8.08 37.40 3.18
758 769 5.185635 GTGGATTTGAAATCCCATTGAGACA 59.814 40.000 28.68 8.74 37.40 3.41
759 770 5.185635 TGTGGATTTGAAATCCCATTGAGAC 59.814 40.000 28.68 19.78 37.40 3.36
760 771 5.331906 TGTGGATTTGAAATCCCATTGAGA 58.668 37.500 28.68 10.07 37.40 3.27
761 772 5.664294 TGTGGATTTGAAATCCCATTGAG 57.336 39.130 28.68 0.00 37.40 3.02
762 773 7.687348 GCATATGTGGATTTGAAATCCCATTGA 60.687 37.037 29.04 19.91 37.40 2.57
763 774 6.425721 GCATATGTGGATTTGAAATCCCATTG 59.574 38.462 29.04 25.80 37.40 2.82
764 775 6.099990 TGCATATGTGGATTTGAAATCCCATT 59.900 34.615 29.04 19.34 37.40 3.16
765 776 5.603395 TGCATATGTGGATTTGAAATCCCAT 59.397 36.000 28.68 28.23 37.40 4.00
766 777 4.961099 TGCATATGTGGATTTGAAATCCCA 59.039 37.500 28.68 24.90 37.40 4.37
767 778 5.291971 GTGCATATGTGGATTTGAAATCCC 58.708 41.667 28.68 21.08 37.40 3.85
768 779 5.069516 AGGTGCATATGTGGATTTGAAATCC 59.930 40.000 26.09 26.09 38.66 3.01
769 780 6.152932 AGGTGCATATGTGGATTTGAAATC 57.847 37.500 9.36 9.36 0.00 2.17
770 781 5.657745 TGAGGTGCATATGTGGATTTGAAAT 59.342 36.000 4.29 0.00 0.00 2.17
771 782 5.015515 TGAGGTGCATATGTGGATTTGAAA 58.984 37.500 4.29 0.00 0.00 2.69
772 783 4.398988 GTGAGGTGCATATGTGGATTTGAA 59.601 41.667 4.29 0.00 0.00 2.69
773 784 3.947196 GTGAGGTGCATATGTGGATTTGA 59.053 43.478 4.29 0.00 0.00 2.69
774 785 3.695556 TGTGAGGTGCATATGTGGATTTG 59.304 43.478 4.29 0.00 0.00 2.32
775 786 3.696051 GTGTGAGGTGCATATGTGGATTT 59.304 43.478 4.29 0.00 0.00 2.17
776 787 3.282021 GTGTGAGGTGCATATGTGGATT 58.718 45.455 4.29 0.00 0.00 3.01
777 788 2.239402 TGTGTGAGGTGCATATGTGGAT 59.761 45.455 4.29 0.00 0.00 3.41
778 789 1.627834 TGTGTGAGGTGCATATGTGGA 59.372 47.619 4.29 0.00 0.00 4.02
779 790 2.112380 TGTGTGAGGTGCATATGTGG 57.888 50.000 4.29 0.00 0.00 4.17
780 791 2.162208 GGTTGTGTGAGGTGCATATGTG 59.838 50.000 4.29 0.00 0.00 3.21
781 792 2.224744 TGGTTGTGTGAGGTGCATATGT 60.225 45.455 4.29 0.00 0.00 2.29
782 793 2.162208 GTGGTTGTGTGAGGTGCATATG 59.838 50.000 0.00 0.00 0.00 1.78
783 794 2.040278 AGTGGTTGTGTGAGGTGCATAT 59.960 45.455 0.00 0.00 0.00 1.78
784 795 1.419762 AGTGGTTGTGTGAGGTGCATA 59.580 47.619 0.00 0.00 0.00 3.14
785 796 0.183492 AGTGGTTGTGTGAGGTGCAT 59.817 50.000 0.00 0.00 0.00 3.96
786 797 0.463654 GAGTGGTTGTGTGAGGTGCA 60.464 55.000 0.00 0.00 0.00 4.57
787 798 1.498865 CGAGTGGTTGTGTGAGGTGC 61.499 60.000 0.00 0.00 0.00 5.01
788 799 0.880278 CCGAGTGGTTGTGTGAGGTG 60.880 60.000 0.00 0.00 0.00 4.00
789 800 1.445942 CCGAGTGGTTGTGTGAGGT 59.554 57.895 0.00 0.00 0.00 3.85
790 801 4.361253 CCGAGTGGTTGTGTGAGG 57.639 61.111 0.00 0.00 0.00 3.86
797 808 6.935763 TCAACTTTGATGAACCGAGTGGTTG 61.936 44.000 4.10 0.00 44.79 3.77
798 809 4.925742 TCAACTTTGATGAACCGAGTGGTT 60.926 41.667 0.00 0.00 46.24 3.67
799 810 3.433031 TCAACTTTGATGAACCGAGTGGT 60.433 43.478 0.00 0.00 40.76 4.16
800 811 3.138304 TCAACTTTGATGAACCGAGTGG 58.862 45.455 0.00 0.00 34.90 4.00
801 812 4.527564 GTTCAACTTTGATGAACCGAGTG 58.472 43.478 7.92 0.00 46.94 3.51
802 813 4.813296 GTTCAACTTTGATGAACCGAGT 57.187 40.909 7.92 0.00 46.94 4.18
808 819 7.492020 CACCAAGAAATGTTCAACTTTGATGAA 59.508 33.333 0.00 0.00 37.00 2.57
809 820 6.979817 CACCAAGAAATGTTCAACTTTGATGA 59.020 34.615 0.00 0.00 37.00 2.92
810 821 6.201425 CCACCAAGAAATGTTCAACTTTGATG 59.799 38.462 0.00 0.00 37.00 3.07
811 822 6.098124 TCCACCAAGAAATGTTCAACTTTGAT 59.902 34.615 0.00 0.00 37.00 2.57
812 823 5.420421 TCCACCAAGAAATGTTCAACTTTGA 59.580 36.000 0.00 0.00 34.92 2.69
813 824 5.659463 TCCACCAAGAAATGTTCAACTTTG 58.341 37.500 0.00 0.00 0.00 2.77
814 825 5.930837 TCCACCAAGAAATGTTCAACTTT 57.069 34.783 0.00 0.00 0.00 2.66
815 826 5.930837 TTCCACCAAGAAATGTTCAACTT 57.069 34.783 0.00 0.00 0.00 2.66
816 827 7.233348 ACATATTCCACCAAGAAATGTTCAACT 59.767 33.333 0.00 0.00 30.36 3.16
817 828 7.378181 ACATATTCCACCAAGAAATGTTCAAC 58.622 34.615 0.00 0.00 30.36 3.18
818 829 7.537596 ACATATTCCACCAAGAAATGTTCAA 57.462 32.000 0.00 0.00 30.36 2.69
819 830 7.537596 AACATATTCCACCAAGAAATGTTCA 57.462 32.000 0.00 0.00 35.24 3.18
820 831 8.087750 TCAAACATATTCCACCAAGAAATGTTC 58.912 33.333 0.00 0.00 36.98 3.18
821 832 7.961351 TCAAACATATTCCACCAAGAAATGTT 58.039 30.769 0.00 0.00 38.12 2.71
822 833 7.537596 TCAAACATATTCCACCAAGAAATGT 57.462 32.000 0.00 0.00 33.16 2.71
823 834 8.830201 TTTCAAACATATTCCACCAAGAAATG 57.170 30.769 0.00 0.00 0.00 2.32
825 836 9.844257 AATTTTCAAACATATTCCACCAAGAAA 57.156 25.926 0.00 0.00 0.00 2.52
826 837 9.270640 CAATTTTCAAACATATTCCACCAAGAA 57.729 29.630 0.00 0.00 0.00 2.52
827 838 8.428063 ACAATTTTCAAACATATTCCACCAAGA 58.572 29.630 0.00 0.00 0.00 3.02
828 839 8.606040 ACAATTTTCAAACATATTCCACCAAG 57.394 30.769 0.00 0.00 0.00 3.61
829 840 8.970859 AACAATTTTCAAACATATTCCACCAA 57.029 26.923 0.00 0.00 0.00 3.67
830 841 7.383572 CGAACAATTTTCAAACATATTCCACCA 59.616 33.333 0.00 0.00 0.00 4.17
831 842 7.596995 TCGAACAATTTTCAAACATATTCCACC 59.403 33.333 0.00 0.00 0.00 4.61
832 843 8.514136 TCGAACAATTTTCAAACATATTCCAC 57.486 30.769 0.00 0.00 0.00 4.02
833 844 7.812191 CCTCGAACAATTTTCAAACATATTCCA 59.188 33.333 0.00 0.00 0.00 3.53
834 845 7.201435 GCCTCGAACAATTTTCAAACATATTCC 60.201 37.037 0.00 0.00 0.00 3.01
835 846 7.461416 CGCCTCGAACAATTTTCAAACATATTC 60.461 37.037 0.00 0.00 0.00 1.75
836 847 6.307800 CGCCTCGAACAATTTTCAAACATATT 59.692 34.615 0.00 0.00 0.00 1.28
837 848 5.799936 CGCCTCGAACAATTTTCAAACATAT 59.200 36.000 0.00 0.00 0.00 1.78
838 849 5.150683 CGCCTCGAACAATTTTCAAACATA 58.849 37.500 0.00 0.00 0.00 2.29
839 850 3.980775 CGCCTCGAACAATTTTCAAACAT 59.019 39.130 0.00 0.00 0.00 2.71
840 851 3.181495 ACGCCTCGAACAATTTTCAAACA 60.181 39.130 0.00 0.00 0.00 2.83
841 852 3.179599 CACGCCTCGAACAATTTTCAAAC 59.820 43.478 0.00 0.00 0.00 2.93
842 853 3.065510 TCACGCCTCGAACAATTTTCAAA 59.934 39.130 0.00 0.00 0.00 2.69
843 854 2.614520 TCACGCCTCGAACAATTTTCAA 59.385 40.909 0.00 0.00 0.00 2.69
844 855 2.214347 TCACGCCTCGAACAATTTTCA 58.786 42.857 0.00 0.00 0.00 2.69
845 856 2.961522 TCACGCCTCGAACAATTTTC 57.038 45.000 0.00 0.00 0.00 2.29
846 857 4.035208 GGATATCACGCCTCGAACAATTTT 59.965 41.667 4.83 0.00 0.00 1.82
847 858 3.560068 GGATATCACGCCTCGAACAATTT 59.440 43.478 4.83 0.00 0.00 1.82
848 859 3.131396 GGATATCACGCCTCGAACAATT 58.869 45.455 4.83 0.00 0.00 2.32
849 860 2.102420 TGGATATCACGCCTCGAACAAT 59.898 45.455 4.83 0.00 0.00 2.71
850 861 1.478916 TGGATATCACGCCTCGAACAA 59.521 47.619 4.83 0.00 0.00 2.83
851 862 1.067060 CTGGATATCACGCCTCGAACA 59.933 52.381 4.83 0.00 0.00 3.18
852 863 1.067212 ACTGGATATCACGCCTCGAAC 59.933 52.381 4.83 0.00 0.00 3.95
853 864 1.399714 ACTGGATATCACGCCTCGAA 58.600 50.000 4.83 0.00 0.00 3.71
854 865 1.399714 AACTGGATATCACGCCTCGA 58.600 50.000 4.83 0.00 0.00 4.04
855 866 2.225068 AAACTGGATATCACGCCTCG 57.775 50.000 4.83 0.00 0.00 4.63
968 983 2.026356 TGGAAAGATTGCAGGGATCGAA 60.026 45.455 0.00 0.00 0.00 3.71
1017 1038 2.571757 CCGCTCGTGGCTGAGTTA 59.428 61.111 8.69 0.00 38.28 2.24
1261 1282 0.331278 CTATTGGGACCAACAGGGCA 59.669 55.000 5.82 0.00 42.05 5.36
1338 1359 1.269448 GCCATGTTTCGAAGAAGCCAA 59.731 47.619 0.00 0.00 45.90 4.52
1345 1366 1.135972 CAGAACCGCCATGTTTCGAAG 60.136 52.381 0.00 0.00 0.00 3.79
1534 1555 1.324740 ACCCTAATGTAGTCGCCGCA 61.325 55.000 0.00 0.00 0.00 5.69
1677 1699 3.264193 ACTCCTTGTGCTCATGTCCAATA 59.736 43.478 0.00 0.00 0.00 1.90
1773 1795 1.280998 CTAGGGTTTGGTTCGGGACAT 59.719 52.381 0.00 0.00 0.00 3.06
1774 1796 0.688487 CTAGGGTTTGGTTCGGGACA 59.312 55.000 0.00 0.00 0.00 4.02
1855 1877 2.251818 CGGATCAGTCCCATGTATCCT 58.748 52.381 0.00 0.00 41.83 3.24
1916 1938 5.069119 TCACGTTCTAGCTCCATATGTTCAT 59.931 40.000 1.24 0.00 0.00 2.57
1972 1994 2.311070 TGTGCATGCCCTCATCCCT 61.311 57.895 16.68 0.00 0.00 4.20
2046 2068 0.178873 AAGGTGAAGTAGCCTCCCCA 60.179 55.000 0.00 0.00 33.24 4.96
2468 2785 2.802719 GTGGCTCCCCATAGACAAAAA 58.197 47.619 0.00 0.00 44.51 1.94
2587 2904 0.935898 GAGAGATGCTCATGTTGCCG 59.064 55.000 10.03 0.00 43.38 5.69
2761 3078 0.977627 TCCCGCCATGACTCATCAGT 60.978 55.000 0.00 0.00 38.57 3.41
2812 3129 1.134491 GTGATCCGAACAAGGGGTAGG 60.134 57.143 0.00 0.00 0.00 3.18
2820 3138 0.037697 CGGGACAGTGATCCGAACAA 60.038 55.000 18.97 0.00 45.96 2.83
2835 3153 1.123077 CCATCTGGATCAAGACGGGA 58.877 55.000 12.49 0.00 37.39 5.14
2985 3303 5.117406 CCTCCTTTAGGGATTTTGCTACT 57.883 43.478 0.00 0.00 44.15 2.57
3113 3431 2.162319 TGCACGAATAACAGCACAGA 57.838 45.000 0.00 0.00 31.05 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.