Multiple sequence alignment - TraesCS4A01G033800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G033800 chr4A 100.000 2981 0 0 1 2981 26010577 26007597 0.000000e+00 5505.0
1 TraesCS4A01G033800 chr4A 97.436 2457 57 5 1 2453 725569096 725571550 0.000000e+00 4183.0
2 TraesCS4A01G033800 chr4A 87.179 78 6 4 2905 2981 280382928 280383002 5.290000e-13 86.1
3 TraesCS4A01G033800 chr2A 98.575 2456 31 4 1 2453 768614843 768617297 0.000000e+00 4338.0
4 TraesCS4A01G033800 chr2A 88.776 392 40 4 2459 2849 740043992 740044380 7.480000e-131 477.0
5 TraesCS4A01G033800 chr2A 92.032 251 18 2 1926 2175 658848642 658848891 4.730000e-93 351.0
6 TraesCS4A01G033800 chr2A 89.091 275 19 7 2177 2451 658848974 658849237 6.160000e-87 331.0
7 TraesCS4A01G033800 chr2A 91.525 177 15 0 2277 2453 30796085 30795909 8.250000e-61 244.0
8 TraesCS4A01G033800 chr2A 91.525 177 15 0 2277 2453 30815906 30815730 8.250000e-61 244.0
9 TraesCS4A01G033800 chr2A 93.333 165 6 2 1 165 30796240 30796081 3.840000e-59 239.0
10 TraesCS4A01G033800 chr2A 93.333 165 6 2 1 165 30816061 30815902 3.840000e-59 239.0
11 TraesCS4A01G033800 chrUn 80.933 2250 405 16 23 2256 1185071 1182830 0.000000e+00 1757.0
12 TraesCS4A01G033800 chr7A 80.559 2253 401 24 23 2256 43041428 43039194 0.000000e+00 1700.0
13 TraesCS4A01G033800 chr7A 80.426 2253 408 23 17 2250 75597414 75599652 0.000000e+00 1687.0
14 TraesCS4A01G033800 chr7A 93.258 178 12 0 2277 2454 699631823 699631646 2.280000e-66 263.0
15 TraesCS4A01G033800 chr7A 92.857 154 11 0 2300 2453 700607996 700608149 1.080000e-54 224.0
16 TraesCS4A01G033800 chr7A 92.208 154 12 0 2300 2453 700631227 700631380 5.000000e-53 219.0
17 TraesCS4A01G033800 chr7A 92.208 154 12 0 2300 2453 700850725 700850572 5.000000e-53 219.0
18 TraesCS4A01G033800 chr7A 91.667 156 8 3 10 165 699631969 699631819 8.370000e-51 211.0
19 TraesCS4A01G033800 chr7A 92.000 150 12 0 2302 2451 700648855 700649004 8.370000e-51 211.0
20 TraesCS4A01G033800 chr5A 80.489 2250 414 17 17 2250 554298798 554301038 0.000000e+00 1700.0
21 TraesCS4A01G033800 chr5A 80.462 2252 410 22 17 2250 566607199 566609438 0.000000e+00 1694.0
22 TraesCS4A01G033800 chr5A 97.943 389 8 0 2454 2842 75961397 75961009 0.000000e+00 675.0
23 TraesCS4A01G033800 chr5A 90.576 382 31 2 2458 2839 65549249 65548873 4.440000e-138 501.0
24 TraesCS4A01G033800 chr5A 88.251 383 41 4 2461 2841 472907017 472907397 3.500000e-124 455.0
25 TraesCS4A01G033800 chr5A 96.491 57 2 0 2925 2981 472905991 472906047 8.800000e-16 95.3
26 TraesCS4A01G033800 chr5A 96.491 57 2 0 2925 2981 472907396 472907340 8.800000e-16 95.3
27 TraesCS4A01G033800 chr5A 89.041 73 6 2 2910 2981 166541699 166541628 4.090000e-14 89.8
28 TraesCS4A01G033800 chr2D 74.654 2241 518 43 27 2242 628168840 628171055 0.000000e+00 946.0
29 TraesCS4A01G033800 chr2D 98.291 351 4 1 2454 2802 421134635 421134985 5.460000e-172 614.0
30 TraesCS4A01G033800 chr7D 97.150 386 8 2 2454 2839 104199413 104199795 0.000000e+00 649.0
31 TraesCS4A01G033800 chr7D 96.915 389 7 2 2454 2842 543737618 543737235 0.000000e+00 647.0
32 TraesCS4A01G033800 chr1A 94.103 390 20 2 2454 2840 88618276 88618665 9.200000e-165 590.0
33 TraesCS4A01G033800 chr5B 75.556 1215 264 29 11 1206 529648631 529649831 4.310000e-158 568.0
34 TraesCS4A01G033800 chr4B 90.000 360 34 2 2480 2839 641541215 641541572 5.820000e-127 464.0
35 TraesCS4A01G033800 chr7B 91.930 285 21 2 2064 2347 306196141 306196424 5.990000e-107 398.0
36 TraesCS4A01G033800 chr7B 90.299 134 8 3 1902 2034 306196017 306196146 1.420000e-38 171.0
37 TraesCS4A01G033800 chr6B 92.135 178 13 1 2277 2453 684420718 684420541 1.770000e-62 250.0
38 TraesCS4A01G033800 chr6B 93.939 165 5 2 1 165 684420873 684420714 8.250000e-61 244.0
39 TraesCS4A01G033800 chr6B 98.182 55 1 0 2927 2981 124994411 124994465 2.450000e-16 97.1
40 TraesCS4A01G033800 chr2B 93.333 165 6 2 1 165 717623023 717623182 3.840000e-59 239.0
41 TraesCS4A01G033800 chr2B 91.011 178 14 2 2277 2453 717623178 717623354 3.840000e-59 239.0
42 TraesCS4A01G033800 chr6A 93.506 154 10 0 2300 2453 604300123 604299970 2.310000e-56 230.0
43 TraesCS4A01G033800 chr6A 93.548 62 4 0 2920 2981 152033755 152033816 3.160000e-15 93.5
44 TraesCS4A01G033800 chr3B 92.208 154 12 0 2300 2453 759880991 759881144 5.000000e-53 219.0
45 TraesCS4A01G033800 chr3B 96.552 58 2 0 2924 2981 242677707 242677650 2.450000e-16 97.1
46 TraesCS4A01G033800 chr3B 94.828 58 3 0 2924 2981 557616010 557615953 1.140000e-14 91.6
47 TraesCS4A01G033800 chr3A 96.429 56 2 0 2926 2981 118506419 118506364 3.160000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G033800 chr4A 26007597 26010577 2980 True 5505.00 5505 100.0000 1 2981 1 chr4A.!!$R1 2980
1 TraesCS4A01G033800 chr4A 725569096 725571550 2454 False 4183.00 4183 97.4360 1 2453 1 chr4A.!!$F2 2452
2 TraesCS4A01G033800 chr2A 768614843 768617297 2454 False 4338.00 4338 98.5750 1 2453 1 chr2A.!!$F2 2452
3 TraesCS4A01G033800 chr2A 658848642 658849237 595 False 341.00 351 90.5615 1926 2451 2 chr2A.!!$F3 525
4 TraesCS4A01G033800 chrUn 1182830 1185071 2241 True 1757.00 1757 80.9330 23 2256 1 chrUn.!!$R1 2233
5 TraesCS4A01G033800 chr7A 43039194 43041428 2234 True 1700.00 1700 80.5590 23 2256 1 chr7A.!!$R1 2233
6 TraesCS4A01G033800 chr7A 75597414 75599652 2238 False 1687.00 1687 80.4260 17 2250 1 chr7A.!!$F1 2233
7 TraesCS4A01G033800 chr5A 554298798 554301038 2240 False 1700.00 1700 80.4890 17 2250 1 chr5A.!!$F1 2233
8 TraesCS4A01G033800 chr5A 566607199 566609438 2239 False 1694.00 1694 80.4620 17 2250 1 chr5A.!!$F2 2233
9 TraesCS4A01G033800 chr5A 472905991 472907397 1406 False 275.15 455 92.3710 2461 2981 2 chr5A.!!$F3 520
10 TraesCS4A01G033800 chr2D 628168840 628171055 2215 False 946.00 946 74.6540 27 2242 1 chr2D.!!$F2 2215
11 TraesCS4A01G033800 chr5B 529648631 529649831 1200 False 568.00 568 75.5560 11 1206 1 chr5B.!!$F1 1195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 148 3.510459 GCCTATCCAAAAGGGCCATAAT 58.49 45.455 6.18 0.0 38.77 1.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 2133 5.63781 TGTAGAACGCAAATAGGACTTCAAG 59.362 40.0 0.0 0.0 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 148 3.510459 GCCTATCCAAAAGGGCCATAAT 58.490 45.455 6.18 0.00 38.77 1.28
235 243 7.731054 AGAGAGTGGCTTGTATATTCTAAAGG 58.269 38.462 0.00 0.00 0.00 3.11
360 368 4.774726 TCAGACTTAGAGAGCATGAAACCT 59.225 41.667 0.00 0.00 0.00 3.50
636 644 4.258543 TGACCCGGTTATTCAAGAACATC 58.741 43.478 0.00 0.00 0.00 3.06
1205 1222 9.415544 CACTAAGAAATGGAAGATTTTGAAAGG 57.584 33.333 0.00 0.00 0.00 3.11
1638 1665 6.496571 TCGGAAAAAGCGTGAAATTAAAAGA 58.503 32.000 0.00 0.00 0.00 2.52
2151 2184 6.322969 TGACACAAGAAAGACTTAGTGGACTA 59.677 38.462 11.97 0.00 39.50 2.59
2453 2567 3.549433 TTCCCTGGTACGGCCCTGA 62.549 63.158 0.00 0.00 36.04 3.86
2454 2568 2.768344 CCCTGGTACGGCCCTGAT 60.768 66.667 0.00 0.00 36.04 2.90
2455 2569 2.505982 CCTGGTACGGCCCTGATG 59.494 66.667 0.00 0.00 36.04 3.07
2456 2570 2.367202 CCTGGTACGGCCCTGATGT 61.367 63.158 0.00 0.00 36.04 3.06
2457 2571 1.602237 CTGGTACGGCCCTGATGTT 59.398 57.895 0.00 0.00 36.04 2.71
2458 2572 0.744414 CTGGTACGGCCCTGATGTTG 60.744 60.000 0.00 0.00 36.04 3.33
2459 2573 1.195442 TGGTACGGCCCTGATGTTGA 61.195 55.000 0.00 0.00 36.04 3.18
2460 2574 0.035820 GGTACGGCCCTGATGTTGAA 60.036 55.000 0.00 0.00 0.00 2.69
2461 2575 1.084289 GTACGGCCCTGATGTTGAAC 58.916 55.000 0.00 0.00 0.00 3.18
2462 2576 0.981183 TACGGCCCTGATGTTGAACT 59.019 50.000 0.00 0.00 0.00 3.01
2463 2577 0.981183 ACGGCCCTGATGTTGAACTA 59.019 50.000 0.00 0.00 0.00 2.24
2464 2578 1.349688 ACGGCCCTGATGTTGAACTAA 59.650 47.619 0.00 0.00 0.00 2.24
2500 2614 8.523658 GGTATTGTACTGATCATAGATGTGCTA 58.476 37.037 0.00 0.00 0.00 3.49
2510 2624 9.481340 TGATCATAGATGTGCTAGTACAAATTC 57.519 33.333 17.90 10.89 33.69 2.17
2516 2630 8.023021 AGATGTGCTAGTACAAATTCTATGGA 57.977 34.615 17.90 0.00 33.69 3.41
2537 2651 6.451393 TGGATGTTTTGTATGGCTTTTACAC 58.549 36.000 0.00 0.00 29.60 2.90
2538 2652 6.040955 TGGATGTTTTGTATGGCTTTTACACA 59.959 34.615 0.00 0.00 29.60 3.72
2539 2653 6.364976 GGATGTTTTGTATGGCTTTTACACAC 59.635 38.462 0.00 0.00 29.60 3.82
2543 2657 5.431420 TTGTATGGCTTTTACACACACAG 57.569 39.130 0.00 0.00 29.60 3.66
2545 2659 4.513692 TGTATGGCTTTTACACACACAGAC 59.486 41.667 0.00 0.00 0.00 3.51
2554 2668 3.402628 ACACACACAGACCAGATTACC 57.597 47.619 0.00 0.00 0.00 2.85
2557 2671 4.591498 ACACACACAGACCAGATTACCTAA 59.409 41.667 0.00 0.00 0.00 2.69
2560 2674 5.047235 ACACACAGACCAGATTACCTAAGAC 60.047 44.000 0.00 0.00 0.00 3.01
2567 2682 9.319143 CAGACCAGATTACCTAAGACAAAATAG 57.681 37.037 0.00 0.00 0.00 1.73
2570 2685 8.047310 ACCAGATTACCTAAGACAAAATAGTGG 58.953 37.037 0.00 0.00 0.00 4.00
2573 2688 9.047947 AGATTACCTAAGACAAAATAGTGGAGT 57.952 33.333 0.00 0.00 0.00 3.85
2591 2706 7.606349 AGTGGAGTATACATATACATGTGCAG 58.394 38.462 9.11 0.00 45.17 4.41
2597 2712 3.415212 ACATATACATGTGCAGCATCCC 58.585 45.455 9.11 0.00 43.89 3.85
2600 2715 2.512692 TACATGTGCAGCATCCCTTT 57.487 45.000 9.11 0.00 35.19 3.11
2601 2716 2.512692 ACATGTGCAGCATCCCTTTA 57.487 45.000 0.00 0.00 35.19 1.85
2610 2725 3.635591 CAGCATCCCTTTAAACATCCCT 58.364 45.455 0.00 0.00 0.00 4.20
2634 2749 2.440409 ACATGGGTGAACTGATTGCTC 58.560 47.619 0.00 0.00 0.00 4.26
2642 2757 5.241728 GGGTGAACTGATTGCTCTTTTACTT 59.758 40.000 0.00 0.00 0.00 2.24
2645 2760 6.853362 GTGAACTGATTGCTCTTTTACTTCAC 59.147 38.462 0.00 0.00 0.00 3.18
2648 2763 4.985538 TGATTGCTCTTTTACTTCACCCT 58.014 39.130 0.00 0.00 0.00 4.34
2649 2764 4.761739 TGATTGCTCTTTTACTTCACCCTG 59.238 41.667 0.00 0.00 0.00 4.45
2650 2765 3.140325 TGCTCTTTTACTTCACCCTGG 57.860 47.619 0.00 0.00 0.00 4.45
2652 2767 3.075148 GCTCTTTTACTTCACCCTGGAC 58.925 50.000 0.00 0.00 0.00 4.02
2677 2792 2.324541 ACAAAATGCACTAGGGGCAAA 58.675 42.857 14.23 0.00 45.60 3.68
2680 2795 4.530161 ACAAAATGCACTAGGGGCAAAATA 59.470 37.500 14.23 0.00 45.60 1.40
2684 2799 2.298610 GCACTAGGGGCAAAATAGTCC 58.701 52.381 0.00 0.00 0.00 3.85
2690 2805 4.337264 AGGGGCAAAATAGTCCTTTCAT 57.663 40.909 0.00 0.00 32.56 2.57
2697 2812 6.404074 GGCAAAATAGTCCTTTCATCTCACAG 60.404 42.308 0.00 0.00 0.00 3.66
2729 2844 7.816945 CATTAGTGCCTAAAATGGACAAAAG 57.183 36.000 0.00 0.00 29.35 2.27
2841 2957 5.163088 GGGCCAAATAAGGAATTCTCTCCTA 60.163 44.000 4.39 0.00 45.59 2.94
2842 2958 6.000840 GGCCAAATAAGGAATTCTCTCCTAG 58.999 44.000 5.23 0.00 45.59 3.02
2843 2959 6.000840 GCCAAATAAGGAATTCTCTCCTAGG 58.999 44.000 0.82 0.82 45.59 3.02
2844 2960 6.183361 GCCAAATAAGGAATTCTCTCCTAGGA 60.183 42.308 11.98 11.98 45.59 2.94
2845 2961 7.449247 CCAAATAAGGAATTCTCTCCTAGGAG 58.551 42.308 30.15 30.15 45.59 3.69
2846 2962 7.291182 CCAAATAAGGAATTCTCTCCTAGGAGA 59.709 40.741 34.35 34.35 45.59 3.71
2854 2970 1.707823 TCTCCTAGGAGAAAGGGGGA 58.292 55.000 34.79 13.46 46.89 4.81
2855 2971 2.236851 TCTCCTAGGAGAAAGGGGGAT 58.763 52.381 34.79 0.00 46.89 3.85
2856 2972 3.423943 TCTCCTAGGAGAAAGGGGGATA 58.576 50.000 34.79 11.79 46.89 2.59
2857 2973 4.004862 TCTCCTAGGAGAAAGGGGGATAT 58.995 47.826 34.79 0.00 46.89 1.63
2858 2974 4.046103 TCTCCTAGGAGAAAGGGGGATATC 59.954 50.000 34.79 0.00 46.89 1.63
2859 2975 3.738158 TCCTAGGAGAAAGGGGGATATCA 59.262 47.826 7.62 0.00 34.66 2.15
2860 2976 3.841255 CCTAGGAGAAAGGGGGATATCAC 59.159 52.174 1.05 0.00 0.00 3.06
2861 2977 3.438131 AGGAGAAAGGGGGATATCACA 57.562 47.619 7.40 0.00 0.00 3.58
2862 2978 3.049344 AGGAGAAAGGGGGATATCACAC 58.951 50.000 7.40 2.35 0.00 3.82
2863 2979 2.777692 GGAGAAAGGGGGATATCACACA 59.222 50.000 10.53 0.00 0.00 3.72
2864 2980 3.181450 GGAGAAAGGGGGATATCACACAG 60.181 52.174 10.53 0.00 0.00 3.66
2865 2981 3.711704 GAGAAAGGGGGATATCACACAGA 59.288 47.826 10.53 0.00 0.00 3.41
2866 2982 4.111577 AGAAAGGGGGATATCACACAGAA 58.888 43.478 10.53 0.00 0.00 3.02
2867 2983 4.728860 AGAAAGGGGGATATCACACAGAAT 59.271 41.667 10.53 0.00 0.00 2.40
2868 2984 4.443978 AAGGGGGATATCACACAGAATG 57.556 45.455 10.53 0.00 46.00 2.67
2869 2985 3.668821 AGGGGGATATCACACAGAATGA 58.331 45.455 10.53 0.00 39.69 2.57
2870 2986 3.392616 AGGGGGATATCACACAGAATGAC 59.607 47.826 10.53 0.00 39.69 3.06
2871 2987 3.136443 GGGGGATATCACACAGAATGACA 59.864 47.826 7.40 0.00 39.69 3.58
2872 2988 4.384056 GGGGATATCACACAGAATGACAG 58.616 47.826 7.40 0.00 39.69 3.51
2873 2989 4.101585 GGGGATATCACACAGAATGACAGA 59.898 45.833 7.40 0.00 39.69 3.41
2874 2990 5.396772 GGGGATATCACACAGAATGACAGAA 60.397 44.000 7.40 0.00 39.69 3.02
2875 2991 5.525378 GGGATATCACACAGAATGACAGAAC 59.475 44.000 4.83 0.00 39.69 3.01
2876 2992 5.233050 GGATATCACACAGAATGACAGAACG 59.767 44.000 4.83 0.00 39.69 3.95
2877 2993 3.726291 TCACACAGAATGACAGAACGA 57.274 42.857 0.00 0.00 39.69 3.85
2878 2994 4.053469 TCACACAGAATGACAGAACGAA 57.947 40.909 0.00 0.00 39.69 3.85
2879 2995 4.438148 TCACACAGAATGACAGAACGAAA 58.562 39.130 0.00 0.00 39.69 3.46
2880 2996 4.507756 TCACACAGAATGACAGAACGAAAG 59.492 41.667 0.00 0.00 39.69 2.62
2881 2997 3.809832 ACACAGAATGACAGAACGAAAGG 59.190 43.478 0.00 0.00 39.69 3.11
2882 2998 2.808543 ACAGAATGACAGAACGAAAGGC 59.191 45.455 0.00 0.00 39.69 4.35
2883 2999 2.159787 CAGAATGACAGAACGAAAGGCG 60.160 50.000 0.00 0.00 43.06 5.52
2884 3000 2.066262 GAATGACAGAACGAAAGGCGA 58.934 47.619 0.00 0.00 44.57 5.54
2885 3001 1.714794 ATGACAGAACGAAAGGCGAG 58.285 50.000 0.00 0.00 44.57 5.03
2886 3002 0.319555 TGACAGAACGAAAGGCGAGG 60.320 55.000 0.00 0.00 44.57 4.63
2887 3003 1.004918 ACAGAACGAAAGGCGAGGG 60.005 57.895 0.00 0.00 44.57 4.30
2888 3004 1.292223 CAGAACGAAAGGCGAGGGA 59.708 57.895 0.00 0.00 44.57 4.20
2889 3005 0.737715 CAGAACGAAAGGCGAGGGAG 60.738 60.000 0.00 0.00 44.57 4.30
2890 3006 0.898789 AGAACGAAAGGCGAGGGAGA 60.899 55.000 0.00 0.00 44.57 3.71
2891 3007 0.037605 GAACGAAAGGCGAGGGAGAA 60.038 55.000 0.00 0.00 44.57 2.87
2892 3008 0.395312 AACGAAAGGCGAGGGAGAAA 59.605 50.000 0.00 0.00 44.57 2.52
2893 3009 0.395312 ACGAAAGGCGAGGGAGAAAA 59.605 50.000 0.00 0.00 44.57 2.29
2894 3010 0.796927 CGAAAGGCGAGGGAGAAAAC 59.203 55.000 0.00 0.00 44.57 2.43
2895 3011 0.796927 GAAAGGCGAGGGAGAAAACG 59.203 55.000 0.00 0.00 0.00 3.60
2896 3012 0.108019 AAAGGCGAGGGAGAAAACGT 59.892 50.000 0.00 0.00 0.00 3.99
2897 3013 0.971386 AAGGCGAGGGAGAAAACGTA 59.029 50.000 0.00 0.00 0.00 3.57
2898 3014 0.531200 AGGCGAGGGAGAAAACGTAG 59.469 55.000 0.00 0.00 0.00 3.51
2900 3016 1.474077 GGCGAGGGAGAAAACGTAGTA 59.526 52.381 0.00 0.00 45.00 1.82
2901 3017 2.094545 GGCGAGGGAGAAAACGTAGTAA 60.095 50.000 0.00 0.00 45.00 2.24
2902 3018 3.578688 GCGAGGGAGAAAACGTAGTAAA 58.421 45.455 0.00 0.00 45.00 2.01
2903 3019 3.611549 GCGAGGGAGAAAACGTAGTAAAG 59.388 47.826 0.00 0.00 45.00 1.85
2904 3020 4.802999 CGAGGGAGAAAACGTAGTAAAGT 58.197 43.478 0.00 0.00 45.00 2.66
2905 3021 5.225642 CGAGGGAGAAAACGTAGTAAAGTT 58.774 41.667 0.00 0.00 45.00 2.66
2906 3022 6.381801 CGAGGGAGAAAACGTAGTAAAGTTA 58.618 40.000 0.00 0.00 45.00 2.24
2907 3023 7.031975 CGAGGGAGAAAACGTAGTAAAGTTAT 58.968 38.462 0.00 0.00 45.00 1.89
2908 3024 7.008992 CGAGGGAGAAAACGTAGTAAAGTTATG 59.991 40.741 0.00 0.00 45.00 1.90
2909 3025 7.899973 AGGGAGAAAACGTAGTAAAGTTATGA 58.100 34.615 0.00 0.00 45.00 2.15
2910 3026 7.816513 AGGGAGAAAACGTAGTAAAGTTATGAC 59.183 37.037 0.00 0.00 45.00 3.06
2911 3027 7.063898 GGGAGAAAACGTAGTAAAGTTATGACC 59.936 40.741 0.00 0.00 45.00 4.02
2912 3028 7.599998 GGAGAAAACGTAGTAAAGTTATGACCA 59.400 37.037 0.00 0.00 45.00 4.02
2913 3029 8.530269 AGAAAACGTAGTAAAGTTATGACCAG 57.470 34.615 0.00 0.00 45.00 4.00
2914 3030 8.146412 AGAAAACGTAGTAAAGTTATGACCAGT 58.854 33.333 0.00 0.00 45.00 4.00
2915 3031 9.410556 GAAAACGTAGTAAAGTTATGACCAGTA 57.589 33.333 0.00 0.00 45.00 2.74
2916 3032 9.762933 AAAACGTAGTAAAGTTATGACCAGTAA 57.237 29.630 0.00 0.00 45.00 2.24
2917 3033 9.933723 AAACGTAGTAAAGTTATGACCAGTAAT 57.066 29.630 0.00 0.00 45.00 1.89
2925 3041 8.575649 AAAGTTATGACCAGTAATAAAGGTGG 57.424 34.615 0.00 0.00 35.36 4.61
2926 3042 7.504926 AGTTATGACCAGTAATAAAGGTGGA 57.495 36.000 0.00 0.00 35.36 4.02
2927 3043 7.565680 AGTTATGACCAGTAATAAAGGTGGAG 58.434 38.462 0.00 0.00 35.36 3.86
2928 3044 7.402071 AGTTATGACCAGTAATAAAGGTGGAGA 59.598 37.037 0.00 0.00 35.36 3.71
2929 3045 5.677319 TGACCAGTAATAAAGGTGGAGAG 57.323 43.478 0.00 0.00 35.36 3.20
2930 3046 5.338632 TGACCAGTAATAAAGGTGGAGAGA 58.661 41.667 0.00 0.00 35.36 3.10
2931 3047 5.783360 TGACCAGTAATAAAGGTGGAGAGAA 59.217 40.000 0.00 0.00 35.36 2.87
2932 3048 6.443849 TGACCAGTAATAAAGGTGGAGAGAAT 59.556 38.462 0.00 0.00 35.36 2.40
2933 3049 7.037586 TGACCAGTAATAAAGGTGGAGAGAATT 60.038 37.037 0.00 0.00 35.36 2.17
2934 3050 7.339482 ACCAGTAATAAAGGTGGAGAGAATTC 58.661 38.462 0.00 0.00 33.57 2.17
2935 3051 6.768381 CCAGTAATAAAGGTGGAGAGAATTCC 59.232 42.308 0.65 0.00 37.77 3.01
2936 3052 7.366011 CCAGTAATAAAGGTGGAGAGAATTCCT 60.366 40.741 0.65 0.00 38.12 3.36
2937 3053 8.049721 CAGTAATAAAGGTGGAGAGAATTCCTT 58.950 37.037 0.65 0.00 39.75 3.36
2938 3054 9.280456 AGTAATAAAGGTGGAGAGAATTCCTTA 57.720 33.333 0.65 0.00 37.50 2.69
2941 3057 9.997172 AATAAAGGTGGAGAGAATTCCTTATTT 57.003 29.630 0.65 0.00 37.50 1.40
2942 3058 7.709149 AAAGGTGGAGAGAATTCCTTATTTG 57.291 36.000 0.65 0.00 37.50 2.32
2943 3059 5.760131 AGGTGGAGAGAATTCCTTATTTGG 58.240 41.667 0.65 0.00 38.12 3.28
2944 3060 4.339530 GGTGGAGAGAATTCCTTATTTGGC 59.660 45.833 0.65 0.00 38.12 4.52
2945 3061 4.339530 GTGGAGAGAATTCCTTATTTGGCC 59.660 45.833 0.65 0.00 38.12 5.36
2946 3062 3.891977 GGAGAGAATTCCTTATTTGGCCC 59.108 47.826 0.00 0.00 34.27 5.80
2947 3063 4.386873 GGAGAGAATTCCTTATTTGGCCCT 60.387 45.833 0.00 0.00 34.27 5.19
2948 3064 5.204292 GAGAGAATTCCTTATTTGGCCCTT 58.796 41.667 0.00 0.00 0.00 3.95
2949 3065 5.593786 AGAGAATTCCTTATTTGGCCCTTT 58.406 37.500 0.00 0.00 0.00 3.11
2950 3066 5.658634 AGAGAATTCCTTATTTGGCCCTTTC 59.341 40.000 0.00 0.00 0.00 2.62
2951 3067 5.593786 AGAATTCCTTATTTGGCCCTTTCT 58.406 37.500 0.00 0.00 0.00 2.52
2952 3068 6.025539 AGAATTCCTTATTTGGCCCTTTCTT 58.974 36.000 0.00 0.00 0.00 2.52
2953 3069 7.189087 AGAATTCCTTATTTGGCCCTTTCTTA 58.811 34.615 0.00 0.00 0.00 2.10
2954 3070 7.678171 AGAATTCCTTATTTGGCCCTTTCTTAA 59.322 33.333 0.00 0.00 0.00 1.85
2955 3071 7.806680 ATTCCTTATTTGGCCCTTTCTTAAA 57.193 32.000 0.00 0.00 0.00 1.52
2956 3072 7.619512 TTCCTTATTTGGCCCTTTCTTAAAA 57.380 32.000 0.00 0.00 0.00 1.52
2957 3073 7.806680 TCCTTATTTGGCCCTTTCTTAAAAT 57.193 32.000 0.00 0.00 0.00 1.82
2958 3074 8.213489 TCCTTATTTGGCCCTTTCTTAAAATT 57.787 30.769 0.00 0.00 0.00 1.82
2959 3075 8.664992 TCCTTATTTGGCCCTTTCTTAAAATTT 58.335 29.630 0.00 0.00 0.00 1.82
2960 3076 8.729756 CCTTATTTGGCCCTTTCTTAAAATTTG 58.270 33.333 0.00 0.00 0.00 2.32
2961 3077 6.573664 ATTTGGCCCTTTCTTAAAATTTGC 57.426 33.333 0.00 0.00 0.00 3.68
2962 3078 4.972751 TGGCCCTTTCTTAAAATTTGCT 57.027 36.364 0.00 0.00 0.00 3.91
2963 3079 5.303259 TGGCCCTTTCTTAAAATTTGCTT 57.697 34.783 0.00 0.00 0.00 3.91
2964 3080 5.304778 TGGCCCTTTCTTAAAATTTGCTTC 58.695 37.500 0.00 0.00 0.00 3.86
2965 3081 5.071653 TGGCCCTTTCTTAAAATTTGCTTCT 59.928 36.000 0.00 0.00 0.00 2.85
2966 3082 5.639506 GGCCCTTTCTTAAAATTTGCTTCTC 59.360 40.000 0.00 0.00 0.00 2.87
2967 3083 6.459066 GCCCTTTCTTAAAATTTGCTTCTCT 58.541 36.000 0.00 0.00 0.00 3.10
2968 3084 7.309805 GGCCCTTTCTTAAAATTTGCTTCTCTA 60.310 37.037 0.00 0.00 0.00 2.43
2969 3085 8.253810 GCCCTTTCTTAAAATTTGCTTCTCTAT 58.746 33.333 0.00 0.00 0.00 1.98
2974 3090 8.986477 TCTTAAAATTTGCTTCTCTATTTGGC 57.014 30.769 0.00 0.00 0.00 4.52
2975 3091 8.034804 TCTTAAAATTTGCTTCTCTATTTGGCC 58.965 33.333 0.00 0.00 0.00 5.36
2976 3092 6.364568 AAAATTTGCTTCTCTATTTGGCCT 57.635 33.333 3.32 0.00 0.00 5.19
2977 3093 7.480760 AAAATTTGCTTCTCTATTTGGCCTA 57.519 32.000 3.32 0.00 0.00 3.93
2978 3094 7.480760 AAATTTGCTTCTCTATTTGGCCTAA 57.519 32.000 3.32 2.09 0.00 2.69
2979 3095 7.480760 AATTTGCTTCTCTATTTGGCCTAAA 57.519 32.000 3.32 3.33 0.00 1.85
2980 3096 6.909550 TTTGCTTCTCTATTTGGCCTAAAA 57.090 33.333 3.32 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 148 7.336931 GCAGAAAATCTCCTACCAAGTTTATCA 59.663 37.037 0.00 0.00 0.00 2.15
235 243 6.317391 ACAAAAGCAGAATACTCTATTGAGCC 59.683 38.462 3.93 0.00 43.85 4.70
360 368 6.660521 ACCATATTTTGAAGATGTTCAGCTCA 59.339 34.615 5.34 0.00 43.66 4.26
636 644 5.142635 TCATCATTTGTTATGCGACGAAG 57.857 39.130 0.00 0.00 0.00 3.79
1205 1222 9.303116 TCAGAGTCAATCCTTCTCCTATATTAC 57.697 37.037 0.00 0.00 0.00 1.89
1549 1576 6.237595 GCTATTTCTACTGCAGTAGTGAAACG 60.238 42.308 39.51 28.75 46.08 3.60
1799 1827 6.801539 TTAGTGCATGAGAAGTAAACAAGG 57.198 37.500 0.00 0.00 0.00 3.61
2100 2133 5.637810 TGTAGAACGCAAATAGGACTTCAAG 59.362 40.000 0.00 0.00 0.00 3.02
2292 2406 8.326713 CAATCTTCTGAATAACATCTTGTCTCG 58.673 37.037 0.00 0.00 0.00 4.04
2478 2592 7.588497 ACTAGCACATCTATGATCAGTACAA 57.412 36.000 0.09 0.00 0.00 2.41
2483 2597 9.486497 AATTTGTACTAGCACATCTATGATCAG 57.514 33.333 0.09 0.00 0.00 2.90
2495 2609 8.438676 AACATCCATAGAATTTGTACTAGCAC 57.561 34.615 0.00 0.00 0.00 4.40
2510 2624 8.465999 TGTAAAAGCCATACAAAACATCCATAG 58.534 33.333 0.00 0.00 30.65 2.23
2516 2630 6.699642 GTGTGTGTAAAAGCCATACAAAACAT 59.300 34.615 11.06 0.00 36.01 2.71
2526 2640 2.294074 GGTCTGTGTGTGTAAAAGCCA 58.706 47.619 0.00 0.00 0.00 4.75
2527 2641 2.290641 CTGGTCTGTGTGTGTAAAAGCC 59.709 50.000 0.00 0.00 0.00 4.35
2537 2651 5.047306 TGTCTTAGGTAATCTGGTCTGTGTG 60.047 44.000 0.00 0.00 0.00 3.82
2538 2652 5.084519 TGTCTTAGGTAATCTGGTCTGTGT 58.915 41.667 0.00 0.00 0.00 3.72
2539 2653 5.661056 TGTCTTAGGTAATCTGGTCTGTG 57.339 43.478 0.00 0.00 0.00 3.66
2543 2657 9.099454 CACTATTTTGTCTTAGGTAATCTGGTC 57.901 37.037 0.00 0.00 0.00 4.02
2545 2659 8.265055 TCCACTATTTTGTCTTAGGTAATCTGG 58.735 37.037 0.00 0.00 0.00 3.86
2567 2682 6.311445 GCTGCACATGTATATGTATACTCCAC 59.689 42.308 4.64 0.00 45.53 4.02
2570 2685 7.223582 GGATGCTGCACATGTATATGTATACTC 59.776 40.741 3.57 0.00 45.53 2.59
2573 2688 6.156775 AGGGATGCTGCACATGTATATGTATA 59.843 38.462 3.57 0.00 45.53 1.47
2591 2706 6.071051 TGTTTTAGGGATGTTTAAAGGGATGC 60.071 38.462 0.00 0.00 0.00 3.91
2610 2725 4.832266 AGCAATCAGTTCACCCATGTTTTA 59.168 37.500 0.00 0.00 0.00 1.52
2634 2749 4.086706 ACTGTCCAGGGTGAAGTAAAAG 57.913 45.455 0.00 0.00 0.00 2.27
2642 2757 3.935818 TTTTGTAACTGTCCAGGGTGA 57.064 42.857 0.00 0.00 0.00 4.02
2645 2760 2.890311 TGCATTTTGTAACTGTCCAGGG 59.110 45.455 0.00 0.00 0.00 4.45
2648 2763 4.759693 CCTAGTGCATTTTGTAACTGTCCA 59.240 41.667 0.00 0.00 0.00 4.02
2649 2764 4.156008 CCCTAGTGCATTTTGTAACTGTCC 59.844 45.833 0.00 0.00 0.00 4.02
2650 2765 4.156008 CCCCTAGTGCATTTTGTAACTGTC 59.844 45.833 0.00 0.00 0.00 3.51
2652 2767 3.119495 GCCCCTAGTGCATTTTGTAACTG 60.119 47.826 0.00 0.00 0.00 3.16
2677 2792 8.375506 TGTTAACTGTGAGATGAAAGGACTATT 58.624 33.333 7.22 0.00 0.00 1.73
2680 2795 5.992217 GTGTTAACTGTGAGATGAAAGGACT 59.008 40.000 7.22 0.00 0.00 3.85
2684 2799 6.808008 ATGGTGTTAACTGTGAGATGAAAG 57.192 37.500 7.22 0.00 0.00 2.62
2690 2805 4.994852 GCACTAATGGTGTTAACTGTGAGA 59.005 41.667 7.22 0.00 46.86 3.27
2749 2864 9.715121 TCTTCCTTATTTGACACGTAAAGTAAT 57.285 29.630 0.00 0.00 0.00 1.89
2797 2913 5.513094 GGCCCTTTCTTAAAATTTGCTTCCT 60.513 40.000 0.00 0.00 0.00 3.36
2841 2957 3.049344 GTGTGATATCCCCCTTTCTCCT 58.951 50.000 0.00 0.00 0.00 3.69
2842 2958 2.777692 TGTGTGATATCCCCCTTTCTCC 59.222 50.000 0.00 0.00 0.00 3.71
2843 2959 3.711704 TCTGTGTGATATCCCCCTTTCTC 59.288 47.826 0.00 0.00 0.00 2.87
2844 2960 3.736094 TCTGTGTGATATCCCCCTTTCT 58.264 45.455 0.00 0.00 0.00 2.52
2845 2961 4.503714 TTCTGTGTGATATCCCCCTTTC 57.496 45.455 0.00 0.00 0.00 2.62
2846 2962 4.478317 TCATTCTGTGTGATATCCCCCTTT 59.522 41.667 0.00 0.00 0.00 3.11
2847 2963 4.047166 TCATTCTGTGTGATATCCCCCTT 58.953 43.478 0.00 0.00 0.00 3.95
2848 2964 3.392616 GTCATTCTGTGTGATATCCCCCT 59.607 47.826 0.00 0.00 0.00 4.79
2849 2965 3.136443 TGTCATTCTGTGTGATATCCCCC 59.864 47.826 0.00 0.00 0.00 5.40
2850 2966 4.101585 TCTGTCATTCTGTGTGATATCCCC 59.898 45.833 0.00 0.00 0.00 4.81
2851 2967 5.282055 TCTGTCATTCTGTGTGATATCCC 57.718 43.478 0.00 0.00 0.00 3.85
2852 2968 5.233050 CGTTCTGTCATTCTGTGTGATATCC 59.767 44.000 0.00 0.00 0.00 2.59
2853 2969 6.036470 TCGTTCTGTCATTCTGTGTGATATC 58.964 40.000 0.00 0.00 0.00 1.63
2854 2970 5.965922 TCGTTCTGTCATTCTGTGTGATAT 58.034 37.500 0.00 0.00 0.00 1.63
2855 2971 5.385509 TCGTTCTGTCATTCTGTGTGATA 57.614 39.130 0.00 0.00 0.00 2.15
2856 2972 4.257267 TCGTTCTGTCATTCTGTGTGAT 57.743 40.909 0.00 0.00 0.00 3.06
2857 2973 3.726291 TCGTTCTGTCATTCTGTGTGA 57.274 42.857 0.00 0.00 0.00 3.58
2858 2974 4.319046 CCTTTCGTTCTGTCATTCTGTGTG 60.319 45.833 0.00 0.00 0.00 3.82
2859 2975 3.809832 CCTTTCGTTCTGTCATTCTGTGT 59.190 43.478 0.00 0.00 0.00 3.72
2860 2976 3.364366 GCCTTTCGTTCTGTCATTCTGTG 60.364 47.826 0.00 0.00 0.00 3.66
2861 2977 2.808543 GCCTTTCGTTCTGTCATTCTGT 59.191 45.455 0.00 0.00 0.00 3.41
2862 2978 2.159787 CGCCTTTCGTTCTGTCATTCTG 60.160 50.000 0.00 0.00 0.00 3.02
2863 2979 2.069273 CGCCTTTCGTTCTGTCATTCT 58.931 47.619 0.00 0.00 0.00 2.40
2864 2980 2.066262 TCGCCTTTCGTTCTGTCATTC 58.934 47.619 0.00 0.00 39.67 2.67
2865 2981 2.069273 CTCGCCTTTCGTTCTGTCATT 58.931 47.619 0.00 0.00 39.67 2.57
2866 2982 1.673033 CCTCGCCTTTCGTTCTGTCAT 60.673 52.381 0.00 0.00 39.67 3.06
2867 2983 0.319555 CCTCGCCTTTCGTTCTGTCA 60.320 55.000 0.00 0.00 39.67 3.58
2868 2984 1.014564 CCCTCGCCTTTCGTTCTGTC 61.015 60.000 0.00 0.00 39.67 3.51
2869 2985 1.004918 CCCTCGCCTTTCGTTCTGT 60.005 57.895 0.00 0.00 39.67 3.41
2870 2986 0.737715 CTCCCTCGCCTTTCGTTCTG 60.738 60.000 0.00 0.00 39.67 3.02
2871 2987 0.898789 TCTCCCTCGCCTTTCGTTCT 60.899 55.000 0.00 0.00 39.67 3.01
2872 2988 0.037605 TTCTCCCTCGCCTTTCGTTC 60.038 55.000 0.00 0.00 39.67 3.95
2873 2989 0.395312 TTTCTCCCTCGCCTTTCGTT 59.605 50.000 0.00 0.00 39.67 3.85
2874 2990 0.395312 TTTTCTCCCTCGCCTTTCGT 59.605 50.000 0.00 0.00 39.67 3.85
2875 2991 0.796927 GTTTTCTCCCTCGCCTTTCG 59.203 55.000 0.00 0.00 40.15 3.46
2876 2992 0.796927 CGTTTTCTCCCTCGCCTTTC 59.203 55.000 0.00 0.00 0.00 2.62
2877 2993 0.108019 ACGTTTTCTCCCTCGCCTTT 59.892 50.000 0.00 0.00 0.00 3.11
2878 2994 0.971386 TACGTTTTCTCCCTCGCCTT 59.029 50.000 0.00 0.00 0.00 4.35
2879 2995 0.531200 CTACGTTTTCTCCCTCGCCT 59.469 55.000 0.00 0.00 0.00 5.52
2880 2996 0.245813 ACTACGTTTTCTCCCTCGCC 59.754 55.000 0.00 0.00 0.00 5.54
2881 2997 2.927553 TACTACGTTTTCTCCCTCGC 57.072 50.000 0.00 0.00 0.00 5.03
2882 2998 4.802999 ACTTTACTACGTTTTCTCCCTCG 58.197 43.478 0.00 0.00 0.00 4.63
2883 2999 8.031277 TCATAACTTTACTACGTTTTCTCCCTC 58.969 37.037 0.00 0.00 0.00 4.30
2884 3000 7.816513 GTCATAACTTTACTACGTTTTCTCCCT 59.183 37.037 0.00 0.00 0.00 4.20
2885 3001 7.063898 GGTCATAACTTTACTACGTTTTCTCCC 59.936 40.741 0.00 0.00 0.00 4.30
2886 3002 7.599998 TGGTCATAACTTTACTACGTTTTCTCC 59.400 37.037 0.00 0.00 0.00 3.71
2887 3003 8.524870 TGGTCATAACTTTACTACGTTTTCTC 57.475 34.615 0.00 0.00 0.00 2.87
2888 3004 8.146412 ACTGGTCATAACTTTACTACGTTTTCT 58.854 33.333 0.00 0.00 0.00 2.52
2889 3005 8.302965 ACTGGTCATAACTTTACTACGTTTTC 57.697 34.615 0.00 0.00 0.00 2.29
2890 3006 9.762933 TTACTGGTCATAACTTTACTACGTTTT 57.237 29.630 0.00 0.00 0.00 2.43
2891 3007 9.933723 ATTACTGGTCATAACTTTACTACGTTT 57.066 29.630 0.00 0.00 0.00 3.60
2899 3015 9.675464 CCACCTTTATTACTGGTCATAACTTTA 57.325 33.333 0.00 0.00 30.72 1.85
2900 3016 8.387813 TCCACCTTTATTACTGGTCATAACTTT 58.612 33.333 0.00 0.00 30.72 2.66
2901 3017 7.924541 TCCACCTTTATTACTGGTCATAACTT 58.075 34.615 0.00 0.00 30.72 2.66
2902 3018 7.402071 TCTCCACCTTTATTACTGGTCATAACT 59.598 37.037 0.00 0.00 30.72 2.24
2903 3019 7.562135 TCTCCACCTTTATTACTGGTCATAAC 58.438 38.462 0.00 0.00 30.72 1.89
2904 3020 7.622081 TCTCTCCACCTTTATTACTGGTCATAA 59.378 37.037 0.00 0.00 30.72 1.90
2905 3021 7.130099 TCTCTCCACCTTTATTACTGGTCATA 58.870 38.462 0.00 0.00 30.72 2.15
2906 3022 5.964477 TCTCTCCACCTTTATTACTGGTCAT 59.036 40.000 0.00 0.00 30.72 3.06
2907 3023 5.338632 TCTCTCCACCTTTATTACTGGTCA 58.661 41.667 0.00 0.00 30.72 4.02
2908 3024 5.934402 TCTCTCCACCTTTATTACTGGTC 57.066 43.478 0.00 0.00 30.72 4.02
2909 3025 6.893020 ATTCTCTCCACCTTTATTACTGGT 57.107 37.500 0.00 0.00 33.87 4.00
2910 3026 6.768381 GGAATTCTCTCCACCTTTATTACTGG 59.232 42.308 5.23 0.00 35.36 4.00
2911 3027 7.569240 AGGAATTCTCTCCACCTTTATTACTG 58.431 38.462 5.23 0.00 38.02 2.74
2912 3028 7.757242 AGGAATTCTCTCCACCTTTATTACT 57.243 36.000 5.23 0.00 38.02 2.24
2915 3031 9.997172 AAATAAGGAATTCTCTCCACCTTTATT 57.003 29.630 5.23 0.00 40.68 1.40
2916 3032 9.413734 CAAATAAGGAATTCTCTCCACCTTTAT 57.586 33.333 5.23 0.00 40.68 1.40
2917 3033 7.834181 CCAAATAAGGAATTCTCTCCACCTTTA 59.166 37.037 5.23 0.00 40.68 1.85
2918 3034 6.665248 CCAAATAAGGAATTCTCTCCACCTTT 59.335 38.462 5.23 0.00 40.68 3.11
2919 3035 6.190587 CCAAATAAGGAATTCTCTCCACCTT 58.809 40.000 5.23 0.00 42.49 3.50
2920 3036 5.760131 CCAAATAAGGAATTCTCTCCACCT 58.240 41.667 5.23 0.00 38.02 4.00
2921 3037 4.339530 GCCAAATAAGGAATTCTCTCCACC 59.660 45.833 5.23 0.00 38.02 4.61
2922 3038 4.339530 GGCCAAATAAGGAATTCTCTCCAC 59.660 45.833 5.23 0.00 38.02 4.02
2923 3039 4.536765 GGCCAAATAAGGAATTCTCTCCA 58.463 43.478 5.23 0.00 38.02 3.86
2924 3040 3.891977 GGGCCAAATAAGGAATTCTCTCC 59.108 47.826 4.39 0.00 35.51 3.71
2925 3041 4.797743 AGGGCCAAATAAGGAATTCTCTC 58.202 43.478 6.18 0.00 0.00 3.20
2926 3042 4.888626 AGGGCCAAATAAGGAATTCTCT 57.111 40.909 6.18 0.00 0.00 3.10
2927 3043 5.658634 AGAAAGGGCCAAATAAGGAATTCTC 59.341 40.000 6.18 0.00 0.00 2.87
2928 3044 5.593786 AGAAAGGGCCAAATAAGGAATTCT 58.406 37.500 6.18 0.00 0.00 2.40
2929 3045 5.939764 AGAAAGGGCCAAATAAGGAATTC 57.060 39.130 6.18 0.00 0.00 2.17
2930 3046 7.806680 TTAAGAAAGGGCCAAATAAGGAATT 57.193 32.000 6.18 0.00 0.00 2.17
2931 3047 7.806680 TTTAAGAAAGGGCCAAATAAGGAAT 57.193 32.000 6.18 0.00 0.00 3.01
2932 3048 7.619512 TTTTAAGAAAGGGCCAAATAAGGAA 57.380 32.000 6.18 0.00 0.00 3.36
2933 3049 7.806680 ATTTTAAGAAAGGGCCAAATAAGGA 57.193 32.000 6.18 0.00 0.00 3.36
2934 3050 8.729756 CAAATTTTAAGAAAGGGCCAAATAAGG 58.270 33.333 6.18 0.00 0.00 2.69
2935 3051 8.236586 GCAAATTTTAAGAAAGGGCCAAATAAG 58.763 33.333 6.18 0.00 0.00 1.73
2936 3052 7.941790 AGCAAATTTTAAGAAAGGGCCAAATAA 59.058 29.630 6.18 0.00 0.00 1.40
2937 3053 7.457561 AGCAAATTTTAAGAAAGGGCCAAATA 58.542 30.769 6.18 0.00 0.00 1.40
2938 3054 6.306199 AGCAAATTTTAAGAAAGGGCCAAAT 58.694 32.000 6.18 0.00 0.00 2.32
2939 3055 5.689835 AGCAAATTTTAAGAAAGGGCCAAA 58.310 33.333 6.18 0.00 0.00 3.28
2940 3056 5.303259 AGCAAATTTTAAGAAAGGGCCAA 57.697 34.783 6.18 0.00 0.00 4.52
2941 3057 4.972751 AGCAAATTTTAAGAAAGGGCCA 57.027 36.364 6.18 0.00 0.00 5.36
2942 3058 5.551233 AGAAGCAAATTTTAAGAAAGGGCC 58.449 37.500 0.00 0.00 0.00 5.80
2943 3059 6.459066 AGAGAAGCAAATTTTAAGAAAGGGC 58.541 36.000 0.00 0.00 0.00 5.19
2948 3064 9.423061 GCCAAATAGAGAAGCAAATTTTAAGAA 57.577 29.630 0.00 0.00 0.00 2.52
2949 3065 8.034804 GGCCAAATAGAGAAGCAAATTTTAAGA 58.965 33.333 0.00 0.00 0.00 2.10
2950 3066 8.037166 AGGCCAAATAGAGAAGCAAATTTTAAG 58.963 33.333 5.01 0.00 0.00 1.85
2951 3067 7.906327 AGGCCAAATAGAGAAGCAAATTTTAA 58.094 30.769 5.01 0.00 0.00 1.52
2952 3068 7.480760 AGGCCAAATAGAGAAGCAAATTTTA 57.519 32.000 5.01 0.00 0.00 1.52
2953 3069 6.364568 AGGCCAAATAGAGAAGCAAATTTT 57.635 33.333 5.01 0.00 0.00 1.82
2954 3070 7.480760 TTAGGCCAAATAGAGAAGCAAATTT 57.519 32.000 5.01 0.00 0.00 1.82
2955 3071 7.480760 TTTAGGCCAAATAGAGAAGCAAATT 57.519 32.000 5.01 0.00 0.00 1.82
2956 3072 7.480760 TTTTAGGCCAAATAGAGAAGCAAAT 57.519 32.000 5.01 0.00 0.00 2.32
2957 3073 6.909550 TTTTAGGCCAAATAGAGAAGCAAA 57.090 33.333 5.01 0.00 0.00 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.