Multiple sequence alignment - TraesCS4A01G033700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G033700 chr4A 100.000 3358 0 0 1 3358 25801956 25805313 0.000000e+00 6202.0
1 TraesCS4A01G033700 chr4A 100.000 2704 0 0 3601 6304 25805556 25808259 0.000000e+00 4994.0
2 TraesCS4A01G033700 chr4A 83.015 1101 172 14 926 2015 26012548 26013644 0.000000e+00 983.0
3 TraesCS4A01G033700 chr4A 83.670 643 87 13 2152 2783 26013668 26014303 1.960000e-164 590.0
4 TraesCS4A01G033700 chr4A 90.000 410 34 6 3653 4061 139717652 139718055 2.010000e-144 523.0
5 TraesCS4A01G033700 chr4A 82.465 576 78 11 2152 2719 26065856 26066416 3.420000e-132 483.0
6 TraesCS4A01G033700 chr4A 71.510 702 172 25 5616 6304 584384396 584385082 5.060000e-36 163.0
7 TraesCS4A01G033700 chr4D 93.183 2259 97 16 4064 6304 441636837 441634618 0.000000e+00 3265.0
8 TraesCS4A01G033700 chr4D 92.150 1898 91 26 155 2043 441640041 441638193 0.000000e+00 2627.0
9 TraesCS4A01G033700 chr4D 96.947 1212 29 5 2149 3358 441638161 441636956 0.000000e+00 2026.0
10 TraesCS4A01G033700 chr4D 84.472 644 81 13 2152 2783 441513585 441512949 8.980000e-173 617.0
11 TraesCS4A01G033700 chr4D 82.504 583 71 15 2152 2723 441493599 441493037 3.420000e-132 483.0
12 TraesCS4A01G033700 chr4D 100.000 52 0 0 3601 3652 441636880 441636829 5.200000e-16 97.1
13 TraesCS4A01G033700 chr4B 92.716 1771 93 25 279 2039 548106371 548104627 0.000000e+00 2523.0
14 TraesCS4A01G033700 chr4B 91.845 1214 77 9 2149 3358 548104549 548103354 0.000000e+00 1674.0
15 TraesCS4A01G033700 chr4B 85.514 1567 137 39 4762 6304 548102410 548100910 0.000000e+00 1554.0
16 TraesCS4A01G033700 chr4B 83.102 1083 170 12 934 2007 547580476 547579398 0.000000e+00 974.0
17 TraesCS4A01G033700 chr4B 82.882 701 111 7 4064 4763 548103226 548102534 6.940000e-174 621.0
18 TraesCS4A01G033700 chr4B 83.051 649 83 17 2152 2783 547579373 547578735 1.190000e-156 564.0
19 TraesCS4A01G033700 chr4B 97.647 85 2 0 2059 2143 16082499 16082415 5.090000e-31 147.0
20 TraesCS4A01G033700 chr4B 100.000 28 0 0 5622 5649 437856389 437856362 1.100000e-02 52.8
21 TraesCS4A01G033700 chr2B 84.287 821 105 16 2152 2960 676679230 676678422 0.000000e+00 780.0
22 TraesCS4A01G033700 chr2B 81.076 1004 165 10 934 1926 676194659 676193670 0.000000e+00 778.0
23 TraesCS4A01G033700 chr2B 79.901 1010 166 19 937 1926 676680330 676679338 0.000000e+00 706.0
24 TraesCS4A01G033700 chr2B 83.465 762 102 13 2152 2902 676193566 676192818 0.000000e+00 688.0
25 TraesCS4A01G033700 chr2B 81.884 828 119 20 2151 2960 676476728 676475914 0.000000e+00 669.0
26 TraesCS4A01G033700 chr2B 78.018 1110 202 24 929 2017 676477837 676476749 0.000000e+00 660.0
27 TraesCS4A01G033700 chr2B 84.132 668 80 16 2152 2799 676589830 676589169 1.930000e-174 623.0
28 TraesCS4A01G033700 chr2B 82.095 754 98 22 2151 2877 676484874 676484131 1.500000e-170 610.0
29 TraesCS4A01G033700 chr2B 80.029 701 120 11 929 1622 676590862 676590175 9.430000e-138 501.0
30 TraesCS4A01G033700 chr2B 78.788 561 98 13 929 1484 676485940 676485396 2.160000e-94 357.0
31 TraesCS4A01G033700 chr2B 81.679 262 32 11 5144 5400 676192281 676192031 2.980000e-48 204.0
32 TraesCS4A01G033700 chr2B 96.512 86 3 0 2058 2143 682222868 682222783 6.590000e-30 143.0
33 TraesCS4A01G033700 chr2A 80.597 1005 156 24 929 1912 705527889 705526903 0.000000e+00 739.0
34 TraesCS4A01G033700 chr2A 83.009 771 101 19 2152 2902 705526776 705526016 0.000000e+00 671.0
35 TraesCS4A01G033700 chr2A 80.377 265 33 12 5144 5400 705525561 705525308 3.880000e-42 183.0
36 TraesCS4A01G033700 chr2D 79.961 1018 170 22 929 1926 564923593 564922590 0.000000e+00 719.0
37 TraesCS4A01G033700 chr2D 84.361 665 82 12 2152 2799 564922482 564921823 3.210000e-177 632.0
38 TraesCS4A01G033700 chr2D 88.942 416 43 2 3650 4065 3731802 3732214 1.570000e-140 510.0
39 TraesCS4A01G033700 chr2D 81.439 264 35 8 5141 5400 564921055 564920802 2.980000e-48 204.0
40 TraesCS4A01G033700 chr2D 80.377 265 36 8 5141 5400 564686622 564686369 3.000000e-43 187.0
41 TraesCS4A01G033700 chr2D 96.774 93 3 0 2051 2143 405281260 405281168 8.460000e-34 156.0
42 TraesCS4A01G033700 chr6D 90.511 411 33 5 3652 4061 5731930 5732335 7.190000e-149 538.0
43 TraesCS4A01G033700 chr6D 88.312 77 5 3 549 622 473119109 473119034 8.700000e-14 89.8
44 TraesCS4A01G033700 chr6D 95.238 42 1 1 3310 3350 14158392 14158433 1.470000e-06 65.8
45 TraesCS4A01G033700 chr5B 89.786 421 35 8 3653 4070 477557624 477558039 3.350000e-147 532.0
46 TraesCS4A01G033700 chr5B 81.613 310 38 17 549 850 558567792 558568090 8.170000e-59 239.0
47 TraesCS4A01G033700 chr5B 97.647 85 2 0 2059 2143 419475881 419475965 5.090000e-31 147.0
48 TraesCS4A01G033700 chrUn 90.099 404 35 5 3648 4049 11619311 11619711 2.600000e-143 520.0
49 TraesCS4A01G033700 chrUn 70.392 689 183 18 5627 6304 81314990 81315668 8.580000e-24 122.0
50 TraesCS4A01G033700 chr7B 89.563 412 39 3 3656 4064 221920314 221919904 2.600000e-143 520.0
51 TraesCS4A01G033700 chr7B 82.609 161 25 3 526 684 433879894 433880053 8.520000e-29 139.0
52 TraesCS4A01G033700 chr5D 89.588 413 37 4 3649 4061 63154579 63154985 2.600000e-143 520.0
53 TraesCS4A01G033700 chr5D 82.308 260 29 13 580 833 456679106 456679354 6.400000e-50 209.0
54 TraesCS4A01G033700 chr5D 70.742 687 181 18 5627 6304 311470381 311471056 3.070000e-28 137.0
55 TraesCS4A01G033700 chr5D 94.595 37 0 2 3241 3277 260790076 260790110 8.830000e-04 56.5
56 TraesCS4A01G033700 chr7D 89.512 410 39 3 3653 4061 589511200 589510794 3.370000e-142 516.0
57 TraesCS4A01G033700 chr7D 85.549 173 19 5 534 705 417938085 417938252 6.500000e-40 176.0
58 TraesCS4A01G033700 chr1D 89.512 410 40 2 3653 4061 13748210 13748617 3.370000e-142 516.0
59 TraesCS4A01G033700 chr3D 84.404 327 35 14 547 864 56235782 56235463 2.210000e-79 307.0
60 TraesCS4A01G033700 chr6B 97.647 85 2 0 2059 2143 513140452 513140536 5.090000e-31 147.0
61 TraesCS4A01G033700 chr5A 97.674 86 1 1 2059 2143 632445812 632445727 5.090000e-31 147.0
62 TraesCS4A01G033700 chr3B 95.604 91 4 0 2053 2143 810449787 810449877 5.090000e-31 147.0
63 TraesCS4A01G033700 chr3B 96.471 85 3 0 2059 2143 16915014 16915098 2.370000e-29 141.0
64 TraesCS4A01G033700 chr1B 94.681 94 3 2 2050 2143 607530110 607530201 1.830000e-30 145.0
65 TraesCS4A01G033700 chr1A 81.513 119 15 6 5032 5145 428996787 428996671 2.420000e-14 91.6
66 TraesCS4A01G033700 chr3A 91.667 48 2 2 573 619 586578740 586578694 1.470000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G033700 chr4A 25801956 25808259 6303 False 5598.000000 6202 100.000000 1 6304 2 chr4A.!!$F4 6303
1 TraesCS4A01G033700 chr4A 26012548 26014303 1755 False 786.500000 983 83.342500 926 2783 2 chr4A.!!$F5 1857
2 TraesCS4A01G033700 chr4A 26065856 26066416 560 False 483.000000 483 82.465000 2152 2719 1 chr4A.!!$F1 567
3 TraesCS4A01G033700 chr4D 441634618 441640041 5423 True 2003.775000 3265 95.570000 155 6304 4 chr4D.!!$R3 6149
4 TraesCS4A01G033700 chr4D 441512949 441513585 636 True 617.000000 617 84.472000 2152 2783 1 chr4D.!!$R2 631
5 TraesCS4A01G033700 chr4D 441493037 441493599 562 True 483.000000 483 82.504000 2152 2723 1 chr4D.!!$R1 571
6 TraesCS4A01G033700 chr4B 548100910 548106371 5461 True 1593.000000 2523 88.239250 279 6304 4 chr4B.!!$R4 6025
7 TraesCS4A01G033700 chr4B 547578735 547580476 1741 True 769.000000 974 83.076500 934 2783 2 chr4B.!!$R3 1849
8 TraesCS4A01G033700 chr2B 676678422 676680330 1908 True 743.000000 780 82.094000 937 2960 2 chr2B.!!$R6 2023
9 TraesCS4A01G033700 chr2B 676475914 676477837 1923 True 664.500000 669 79.951000 929 2960 2 chr2B.!!$R3 2031
10 TraesCS4A01G033700 chr2B 676589169 676590862 1693 True 562.000000 623 82.080500 929 2799 2 chr2B.!!$R5 1870
11 TraesCS4A01G033700 chr2B 676192031 676194659 2628 True 556.666667 778 82.073333 934 5400 3 chr2B.!!$R2 4466
12 TraesCS4A01G033700 chr2B 676484131 676485940 1809 True 483.500000 610 80.441500 929 2877 2 chr2B.!!$R4 1948
13 TraesCS4A01G033700 chr2A 705525308 705527889 2581 True 531.000000 739 81.327667 929 5400 3 chr2A.!!$R1 4471
14 TraesCS4A01G033700 chr2D 564920802 564923593 2791 True 518.333333 719 81.920333 929 5400 3 chr2D.!!$R3 4471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 884 0.179148 TGCGTCACGTGCTGTATAGG 60.179 55.000 11.67 0.0 0.00 2.57 F
1610 1651 0.032130 GCCGAGGATAGTCGCATTCA 59.968 55.000 0.00 0.0 38.69 2.57 F
1979 2057 0.098200 CTCATGCAGCAACACATCCG 59.902 55.000 0.00 0.0 0.00 4.18 F
1985 2063 1.328680 GCAGCAACACATCCGTCATAG 59.671 52.381 0.00 0.0 0.00 2.23 F
3675 4176 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.0 0.00 4.63 F
3820 4321 0.181114 ACCTTGAACTGTGAGCTGCA 59.819 50.000 1.02 0.0 0.00 4.41 F
4579 5080 0.248621 GGCGTAAATGGATGTGCAGC 60.249 55.000 0.00 0.0 0.00 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2208 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.0 0.0 0.00 2.57 R
3059 3475 2.719531 TGCAAGTTTGTACAGGGTCA 57.280 45.000 0.0 0.0 0.00 4.02 R
3656 4157 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.0 0.0 0.00 5.19 R
3801 4302 0.181114 TGCAGCTCACAGTTCAAGGT 59.819 50.000 0.0 0.0 0.00 3.50 R
4785 5412 0.178879 CCCCATCTAGCAGATCCCCT 60.179 60.000 0.0 0.0 31.32 4.79 R
4930 5605 1.633945 ACGAGGGGCTCAAATAAACCT 59.366 47.619 0.0 0.0 0.00 3.50 R
6170 6892 2.579860 TCCTCGGTAACTAAGTCCTCCT 59.420 50.000 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.721876 TTGCTTTGCAAACATCTTTCAAG 57.278 34.783 8.05 0.00 45.96 3.02
59 60 4.757594 TGCTTTGCAAACATCTTTCAAGT 58.242 34.783 8.05 0.00 34.76 3.16
60 61 5.177326 TGCTTTGCAAACATCTTTCAAGTT 58.823 33.333 8.05 0.00 34.76 2.66
61 62 5.642919 TGCTTTGCAAACATCTTTCAAGTTT 59.357 32.000 8.05 0.00 34.76 2.66
62 63 7.834625 TTGCTTTGCAAACATCTTTCAAGTTTG 60.835 33.333 8.05 11.64 45.96 2.93
221 222 8.901793 ACTGACCATTTTTACATTTTTGCAAAT 58.098 25.926 13.65 0.00 32.36 2.32
642 651 6.647334 TCCAGTAAGCATTTTGTGATTTCA 57.353 33.333 0.00 0.00 37.64 2.69
644 653 7.669427 TCCAGTAAGCATTTTGTGATTTCATT 58.331 30.769 0.00 0.00 37.64 2.57
645 654 8.801299 TCCAGTAAGCATTTTGTGATTTCATTA 58.199 29.630 0.00 0.00 37.64 1.90
646 655 9.421806 CCAGTAAGCATTTTGTGATTTCATTAA 57.578 29.630 0.00 0.00 37.64 1.40
810 833 1.300697 CCTAATAGGCGTGCGGGAC 60.301 63.158 0.00 0.00 0.00 4.46
859 882 0.457166 GGTGCGTCACGTGCTGTATA 60.457 55.000 11.67 0.00 34.83 1.47
860 883 0.914551 GTGCGTCACGTGCTGTATAG 59.085 55.000 11.67 0.00 0.00 1.31
861 884 0.179148 TGCGTCACGTGCTGTATAGG 60.179 55.000 11.67 0.00 0.00 2.57
917 940 4.351874 TCCGTTTTGTCTGAAATCCTCT 57.648 40.909 0.00 0.00 0.00 3.69
920 943 4.757149 CCGTTTTGTCTGAAATCCTCTCTT 59.243 41.667 0.00 0.00 0.00 2.85
921 944 5.106908 CCGTTTTGTCTGAAATCCTCTCTTC 60.107 44.000 0.00 0.00 0.00 2.87
922 945 5.106908 CGTTTTGTCTGAAATCCTCTCTTCC 60.107 44.000 0.00 0.00 0.00 3.46
923 946 3.876274 TGTCTGAAATCCTCTCTTCCG 57.124 47.619 0.00 0.00 0.00 4.30
924 947 2.093973 TGTCTGAAATCCTCTCTTCCGC 60.094 50.000 0.00 0.00 0.00 5.54
976 999 1.135527 CGCCTGTTCTACCGAATACCA 59.864 52.381 0.00 0.00 0.00 3.25
980 1003 3.446161 CCTGTTCTACCGAATACCACTCA 59.554 47.826 0.00 0.00 0.00 3.41
1074 1097 2.104859 GCTCCGTTTACTTCCGGCC 61.105 63.158 0.00 0.00 43.87 6.13
1197 1220 0.389948 ACAGATTCGCCCAGTTCGTC 60.390 55.000 0.00 0.00 0.00 4.20
1294 1326 1.062525 GCCGACGGATTCATGCAAC 59.937 57.895 20.50 0.00 0.00 4.17
1380 1418 1.079503 GGCTTCATGTCACCGAGTTC 58.920 55.000 0.00 0.00 0.00 3.01
1383 1421 1.986378 CTTCATGTCACCGAGTTCGAC 59.014 52.381 2.59 0.00 43.02 4.20
1486 1527 4.088648 CGACAGCGTTATGGATTTTTCAC 58.911 43.478 0.00 0.00 0.00 3.18
1601 1642 3.609644 CGCTACTTTACTGCCGAGGATAG 60.610 52.174 0.00 0.00 0.00 2.08
1610 1651 0.032130 GCCGAGGATAGTCGCATTCA 59.968 55.000 0.00 0.00 38.69 2.57
1673 1714 1.454663 GCCAAGGAAGGAGCCCATC 60.455 63.158 0.00 0.00 0.00 3.51
1979 2057 0.098200 CTCATGCAGCAACACATCCG 59.902 55.000 0.00 0.00 0.00 4.18
1985 2063 1.328680 GCAGCAACACATCCGTCATAG 59.671 52.381 0.00 0.00 0.00 2.23
2018 2096 7.921214 ACAATTAGGTTACATCTGACATACTCG 59.079 37.037 0.00 0.00 0.00 4.18
2022 2100 4.036971 GGTTACATCTGACATACTCGCTCT 59.963 45.833 0.00 0.00 0.00 4.09
2039 2117 5.245531 TCGCTCTGTTCCATAATTCTTGTT 58.754 37.500 0.00 0.00 0.00 2.83
2043 2121 6.072508 GCTCTGTTCCATAATTCTTGTTGTGA 60.073 38.462 0.00 0.00 0.00 3.58
2060 2176 4.345859 TGTGAAACGGATGGAGTACTTT 57.654 40.909 0.00 0.00 42.39 2.66
2061 2177 4.710324 TGTGAAACGGATGGAGTACTTTT 58.290 39.130 0.00 0.00 42.39 2.27
2062 2178 5.127491 TGTGAAACGGATGGAGTACTTTTT 58.873 37.500 0.00 0.00 42.39 1.94
2101 2217 9.503399 TTCTGATCTATTCATCTTCAATCATGG 57.497 33.333 0.00 0.00 32.72 3.66
2102 2218 7.606839 TCTGATCTATTCATCTTCAATCATGGC 59.393 37.037 0.00 0.00 32.72 4.40
2103 2219 7.228590 TGATCTATTCATCTTCAATCATGGCA 58.771 34.615 0.00 0.00 0.00 4.92
2104 2220 7.390718 TGATCTATTCATCTTCAATCATGGCAG 59.609 37.037 0.00 0.00 0.00 4.85
2105 2221 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
2106 2222 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
2107 2223 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
2108 2224 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
2109 2225 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
2110 2226 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
2111 2227 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
2112 2228 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
2113 2229 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
2114 2230 4.260985 TCAATCATGGCAGTACAACGAAT 58.739 39.130 0.00 0.00 0.00 3.34
2115 2231 5.423886 TCAATCATGGCAGTACAACGAATA 58.576 37.500 0.00 0.00 0.00 1.75
2116 2232 6.054941 TCAATCATGGCAGTACAACGAATAT 58.945 36.000 0.00 0.00 0.00 1.28
2117 2233 6.202762 TCAATCATGGCAGTACAACGAATATC 59.797 38.462 0.00 0.00 0.00 1.63
2118 2234 5.017294 TCATGGCAGTACAACGAATATCA 57.983 39.130 0.00 0.00 0.00 2.15
2119 2235 5.049828 TCATGGCAGTACAACGAATATCAG 58.950 41.667 0.00 0.00 0.00 2.90
2120 2236 4.729227 TGGCAGTACAACGAATATCAGA 57.271 40.909 0.00 0.00 0.00 3.27
2121 2237 5.079689 TGGCAGTACAACGAATATCAGAA 57.920 39.130 0.00 0.00 0.00 3.02
2122 2238 5.483811 TGGCAGTACAACGAATATCAGAAA 58.516 37.500 0.00 0.00 0.00 2.52
2123 2239 6.112734 TGGCAGTACAACGAATATCAGAAAT 58.887 36.000 0.00 0.00 0.00 2.17
2124 2240 7.269316 TGGCAGTACAACGAATATCAGAAATA 58.731 34.615 0.00 0.00 0.00 1.40
2125 2241 7.766738 TGGCAGTACAACGAATATCAGAAATAA 59.233 33.333 0.00 0.00 0.00 1.40
2126 2242 8.774586 GGCAGTACAACGAATATCAGAAATAAT 58.225 33.333 0.00 0.00 0.00 1.28
2339 2455 4.365514 TCTCCAGCACTCACCAATTTTA 57.634 40.909 0.00 0.00 0.00 1.52
2430 2568 7.448420 TCCATGATTACCTGATTGATCTTCTC 58.552 38.462 0.00 0.00 0.00 2.87
3016 3432 3.777106 ATCATCCATACAGGCGAATGT 57.223 42.857 0.00 0.00 37.29 2.71
3028 3444 4.588951 ACAGGCGAATGTTATCCTCTATCA 59.411 41.667 0.00 0.00 0.00 2.15
3059 3475 6.317789 TCGATTGAGCTTTGTTTTCATCTT 57.682 33.333 0.00 0.00 0.00 2.40
3138 3637 5.229423 TGTGGATGTTGCTTATTCTTTTGC 58.771 37.500 0.00 0.00 0.00 3.68
3164 3664 6.183360 CCCTTCTTTTTAGCTGACATCTCATG 60.183 42.308 0.00 0.00 0.00 3.07
3302 3802 7.386015 ACTTTAATCCCCTATCCTATCCCTA 57.614 40.000 0.00 0.00 0.00 3.53
3655 4156 8.517062 AGTCAATTACCTACTACATAACGAGT 57.483 34.615 0.00 0.00 0.00 4.18
3656 4157 9.618890 AGTCAATTACCTACTACATAACGAGTA 57.381 33.333 0.00 0.00 0.00 2.59
3657 4158 9.875675 GTCAATTACCTACTACATAACGAGTAG 57.124 37.037 0.00 2.68 43.20 2.57
3662 4163 5.961396 CTACTACATAACGAGTAGGGCAT 57.039 43.478 0.00 0.00 42.47 4.40
3663 4164 6.328641 CTACTACATAACGAGTAGGGCATT 57.671 41.667 0.00 0.00 42.47 3.56
3664 4165 5.609533 ACTACATAACGAGTAGGGCATTT 57.390 39.130 0.00 0.00 42.47 2.32
3665 4166 5.985911 ACTACATAACGAGTAGGGCATTTT 58.014 37.500 0.00 0.00 42.47 1.82
3666 4167 5.815740 ACTACATAACGAGTAGGGCATTTTG 59.184 40.000 0.00 0.00 42.47 2.44
3667 4168 3.945285 ACATAACGAGTAGGGCATTTTGG 59.055 43.478 0.00 0.00 0.00 3.28
3668 4169 2.871096 AACGAGTAGGGCATTTTGGA 57.129 45.000 0.00 0.00 0.00 3.53
3669 4170 2.403252 ACGAGTAGGGCATTTTGGAG 57.597 50.000 0.00 0.00 0.00 3.86
3670 4171 1.906574 ACGAGTAGGGCATTTTGGAGA 59.093 47.619 0.00 0.00 0.00 3.71
3671 4172 2.280628 CGAGTAGGGCATTTTGGAGAC 58.719 52.381 0.00 0.00 0.00 3.36
3672 4173 2.644676 GAGTAGGGCATTTTGGAGACC 58.355 52.381 0.00 0.00 0.00 3.85
3673 4174 1.065418 AGTAGGGCATTTTGGAGACCG 60.065 52.381 0.00 0.00 0.00 4.79
3674 4175 1.065709 GTAGGGCATTTTGGAGACCGA 60.066 52.381 0.00 0.00 0.00 4.69
3675 4176 0.035056 AGGGCATTTTGGAGACCGAG 60.035 55.000 0.00 0.00 0.00 4.63
3676 4177 1.657751 GGGCATTTTGGAGACCGAGC 61.658 60.000 0.00 0.00 0.00 5.03
3677 4178 0.678048 GGCATTTTGGAGACCGAGCT 60.678 55.000 0.00 0.00 0.00 4.09
3678 4179 0.729690 GCATTTTGGAGACCGAGCTC 59.270 55.000 2.73 2.73 0.00 4.09
3684 4185 3.941081 GAGACCGAGCTCCATGGA 58.059 61.111 15.27 15.27 0.00 3.41
3685 4186 1.739049 GAGACCGAGCTCCATGGAG 59.261 63.158 33.73 33.73 44.56 3.86
3699 4200 6.790232 CTCCATGGAGCCCTTTATTTAAAA 57.210 37.500 28.45 0.00 35.31 1.52
3700 4201 6.538945 TCCATGGAGCCCTTTATTTAAAAC 57.461 37.500 11.44 0.00 0.00 2.43
3701 4202 6.019748 TCCATGGAGCCCTTTATTTAAAACA 58.980 36.000 11.44 0.00 0.00 2.83
3702 4203 6.498651 TCCATGGAGCCCTTTATTTAAAACAA 59.501 34.615 11.44 0.00 0.00 2.83
3703 4204 7.181845 TCCATGGAGCCCTTTATTTAAAACAAT 59.818 33.333 11.44 0.00 0.00 2.71
3704 4205 7.828717 CCATGGAGCCCTTTATTTAAAACAATT 59.171 33.333 5.56 0.00 0.00 2.32
3705 4206 8.882736 CATGGAGCCCTTTATTTAAAACAATTC 58.117 33.333 0.00 0.00 0.00 2.17
3706 4207 7.967908 TGGAGCCCTTTATTTAAAACAATTCA 58.032 30.769 0.00 0.00 0.00 2.57
3707 4208 8.432805 TGGAGCCCTTTATTTAAAACAATTCAA 58.567 29.630 0.00 0.00 0.00 2.69
3708 4209 9.278978 GGAGCCCTTTATTTAAAACAATTCAAA 57.721 29.630 0.00 0.00 0.00 2.69
3771 4272 9.955208 AATACACATGTATGCAATGATGTAAAG 57.045 29.630 0.00 0.00 40.78 1.85
3772 4273 7.395190 ACACATGTATGCAATGATGTAAAGT 57.605 32.000 0.00 0.00 31.35 2.66
3773 4274 7.252708 ACACATGTATGCAATGATGTAAAGTG 58.747 34.615 0.00 0.00 31.35 3.16
3774 4275 7.094248 ACACATGTATGCAATGATGTAAAGTGT 60.094 33.333 0.00 0.00 31.35 3.55
3775 4276 8.397148 CACATGTATGCAATGATGTAAAGTGTA 58.603 33.333 0.00 0.00 31.35 2.90
3776 4277 9.123902 ACATGTATGCAATGATGTAAAGTGTAT 57.876 29.630 0.00 0.00 31.35 2.29
3777 4278 9.389570 CATGTATGCAATGATGTAAAGTGTATG 57.610 33.333 0.00 0.00 0.00 2.39
3778 4279 8.504812 TGTATGCAATGATGTAAAGTGTATGT 57.495 30.769 0.00 0.00 0.00 2.29
3779 4280 8.397148 TGTATGCAATGATGTAAAGTGTATGTG 58.603 33.333 0.00 0.00 0.00 3.21
3780 4281 5.639757 TGCAATGATGTAAAGTGTATGTGC 58.360 37.500 0.00 0.00 0.00 4.57
3781 4282 4.730042 GCAATGATGTAAAGTGTATGTGCG 59.270 41.667 0.00 0.00 0.00 5.34
3782 4283 5.447144 GCAATGATGTAAAGTGTATGTGCGA 60.447 40.000 0.00 0.00 0.00 5.10
3783 4284 6.541969 CAATGATGTAAAGTGTATGTGCGAA 58.458 36.000 0.00 0.00 0.00 4.70
3784 4285 6.735678 ATGATGTAAAGTGTATGTGCGAAA 57.264 33.333 0.00 0.00 0.00 3.46
3785 4286 6.546972 TGATGTAAAGTGTATGTGCGAAAA 57.453 33.333 0.00 0.00 0.00 2.29
3786 4287 6.960468 TGATGTAAAGTGTATGTGCGAAAAA 58.040 32.000 0.00 0.00 0.00 1.94
3812 4313 6.126863 TCAGGATGAAATACCTTGAACTGT 57.873 37.500 0.00 0.00 45.97 3.55
3813 4314 5.939883 TCAGGATGAAATACCTTGAACTGTG 59.060 40.000 0.00 0.00 45.97 3.66
3814 4315 5.939883 CAGGATGAAATACCTTGAACTGTGA 59.060 40.000 0.00 0.00 39.69 3.58
3815 4316 6.093219 CAGGATGAAATACCTTGAACTGTGAG 59.907 42.308 0.00 0.00 39.69 3.51
3816 4317 5.163713 GGATGAAATACCTTGAACTGTGAGC 60.164 44.000 0.00 0.00 0.00 4.26
3817 4318 4.973168 TGAAATACCTTGAACTGTGAGCT 58.027 39.130 0.00 0.00 0.00 4.09
3818 4319 4.756642 TGAAATACCTTGAACTGTGAGCTG 59.243 41.667 0.00 0.00 0.00 4.24
3819 4320 2.169832 TACCTTGAACTGTGAGCTGC 57.830 50.000 0.00 0.00 0.00 5.25
3820 4321 0.181114 ACCTTGAACTGTGAGCTGCA 59.819 50.000 1.02 0.00 0.00 4.41
3854 4355 9.883142 AAACAAAATCATGGACTTTAAAGTTGA 57.117 25.926 21.40 19.88 39.88 3.18
3855 4356 9.883142 AACAAAATCATGGACTTTAAAGTTGAA 57.117 25.926 21.40 10.90 39.88 2.69
3856 4357 9.313118 ACAAAATCATGGACTTTAAAGTTGAAC 57.687 29.630 21.40 12.70 39.88 3.18
3857 4358 9.311916 CAAAATCATGGACTTTAAAGTTGAACA 57.688 29.630 21.40 17.11 39.88 3.18
3858 4359 9.533253 AAAATCATGGACTTTAAAGTTGAACAG 57.467 29.630 21.40 10.27 39.88 3.16
3859 4360 7.823745 ATCATGGACTTTAAAGTTGAACAGT 57.176 32.000 21.40 4.77 39.88 3.55
3860 4361 8.918202 ATCATGGACTTTAAAGTTGAACAGTA 57.082 30.769 21.40 10.82 39.88 2.74
3861 4362 8.149973 TCATGGACTTTAAAGTTGAACAGTAC 57.850 34.615 21.40 5.92 39.88 2.73
3862 4363 7.771361 TCATGGACTTTAAAGTTGAACAGTACA 59.229 33.333 21.40 4.75 39.88 2.90
3863 4364 8.567948 CATGGACTTTAAAGTTGAACAGTACAT 58.432 33.333 21.40 6.91 39.88 2.29
3864 4365 9.787435 ATGGACTTTAAAGTTGAACAGTACATA 57.213 29.630 21.40 0.71 39.88 2.29
3865 4366 9.787435 TGGACTTTAAAGTTGAACAGTACATAT 57.213 29.630 21.40 0.00 39.88 1.78
3867 4368 9.543018 GACTTTAAAGTTGAACAGTACATATGC 57.457 33.333 21.40 0.00 39.88 3.14
3868 4369 9.284968 ACTTTAAAGTTGAACAGTACATATGCT 57.715 29.630 15.22 0.00 35.21 3.79
3875 4376 8.237267 AGTTGAACAGTACATATGCTAAAAAGC 58.763 33.333 1.58 0.00 0.00 3.51
3876 4377 7.083875 TGAACAGTACATATGCTAAAAAGCC 57.916 36.000 1.58 0.00 0.00 4.35
3877 4378 6.094881 TGAACAGTACATATGCTAAAAAGCCC 59.905 38.462 1.58 0.00 0.00 5.19
3878 4379 4.887655 ACAGTACATATGCTAAAAAGCCCC 59.112 41.667 1.58 0.00 0.00 5.80
3879 4380 4.887071 CAGTACATATGCTAAAAAGCCCCA 59.113 41.667 1.58 0.00 0.00 4.96
3880 4381 5.009010 CAGTACATATGCTAAAAAGCCCCAG 59.991 44.000 1.58 0.00 0.00 4.45
3881 4382 4.249638 ACATATGCTAAAAAGCCCCAGA 57.750 40.909 1.58 0.00 0.00 3.86
3882 4383 4.808042 ACATATGCTAAAAAGCCCCAGAT 58.192 39.130 1.58 0.00 0.00 2.90
3883 4384 5.211201 ACATATGCTAAAAAGCCCCAGATT 58.789 37.500 1.58 0.00 0.00 2.40
3884 4385 5.662657 ACATATGCTAAAAAGCCCCAGATTT 59.337 36.000 1.58 0.00 31.52 2.17
3885 4386 6.838612 ACATATGCTAAAAAGCCCCAGATTTA 59.161 34.615 1.58 0.00 29.67 1.40
3886 4387 7.510343 ACATATGCTAAAAAGCCCCAGATTTAT 59.490 33.333 1.58 0.00 29.67 1.40
3887 4388 9.023962 CATATGCTAAAAAGCCCCAGATTTATA 57.976 33.333 0.00 0.00 29.67 0.98
3888 4389 9.774071 ATATGCTAAAAAGCCCCAGATTTATAT 57.226 29.630 0.00 0.00 29.67 0.86
3889 4390 7.912778 TGCTAAAAAGCCCCAGATTTATATT 57.087 32.000 0.00 0.00 29.67 1.28
3890 4391 8.317776 TGCTAAAAAGCCCCAGATTTATATTT 57.682 30.769 0.00 0.00 29.67 1.40
3891 4392 8.767436 TGCTAAAAAGCCCCAGATTTATATTTT 58.233 29.630 0.00 0.00 29.67 1.82
3892 4393 9.613428 GCTAAAAAGCCCCAGATTTATATTTTT 57.387 29.630 0.00 0.00 34.21 1.94
3936 4437 8.986477 ATGTATTTAGACCTGAAAATTTGCAC 57.014 30.769 0.00 0.00 0.00 4.57
3937 4438 7.946207 TGTATTTAGACCTGAAAATTTGCACA 58.054 30.769 0.00 0.00 0.00 4.57
3938 4439 7.865385 TGTATTTAGACCTGAAAATTTGCACAC 59.135 33.333 0.00 0.00 0.00 3.82
3939 4440 5.843673 TTAGACCTGAAAATTTGCACACA 57.156 34.783 0.00 0.00 0.00 3.72
3940 4441 4.942761 AGACCTGAAAATTTGCACACAT 57.057 36.364 0.00 0.00 0.00 3.21
3941 4442 7.517614 TTAGACCTGAAAATTTGCACACATA 57.482 32.000 0.00 0.00 0.00 2.29
3942 4443 6.594788 AGACCTGAAAATTTGCACACATAT 57.405 33.333 0.00 0.00 0.00 1.78
3943 4444 7.701539 AGACCTGAAAATTTGCACACATATA 57.298 32.000 0.00 0.00 0.00 0.86
3944 4445 7.538575 AGACCTGAAAATTTGCACACATATAC 58.461 34.615 0.00 0.00 0.00 1.47
3945 4446 7.176515 AGACCTGAAAATTTGCACACATATACA 59.823 33.333 0.00 0.00 0.00 2.29
3946 4447 7.839907 ACCTGAAAATTTGCACACATATACAT 58.160 30.769 0.00 0.00 0.00 2.29
3947 4448 8.313292 ACCTGAAAATTTGCACACATATACATT 58.687 29.630 0.00 0.00 0.00 2.71
3948 4449 9.800433 CCTGAAAATTTGCACACATATACATTA 57.200 29.630 0.00 0.00 0.00 1.90
3958 4459 9.218440 TGCACACATATACATTATGTATCTTGG 57.782 33.333 19.64 14.10 42.16 3.61
3959 4460 9.219603 GCACACATATACATTATGTATCTTGGT 57.780 33.333 19.64 14.56 42.16 3.67
4032 4533 8.896320 TTTAAAGTTTTCAAATAAAGGCCTCC 57.104 30.769 5.23 0.00 0.00 4.30
4033 4534 6.493189 AAAGTTTTCAAATAAAGGCCTCCA 57.507 33.333 5.23 0.00 0.00 3.86
4034 4535 6.686484 AAGTTTTCAAATAAAGGCCTCCAT 57.314 33.333 5.23 0.00 0.00 3.41
4035 4536 6.041423 AGTTTTCAAATAAAGGCCTCCATG 57.959 37.500 5.23 1.29 0.00 3.66
4036 4537 5.046376 AGTTTTCAAATAAAGGCCTCCATGG 60.046 40.000 5.23 4.97 39.35 3.66
4037 4538 4.329638 TTCAAATAAAGGCCTCCATGGA 57.670 40.909 15.27 15.27 38.35 3.41
4038 4539 3.902218 TCAAATAAAGGCCTCCATGGAG 58.098 45.455 31.69 31.69 41.63 3.86
4039 4540 2.363359 CAAATAAAGGCCTCCATGGAGC 59.637 50.000 32.97 26.44 40.69 4.70
4040 4541 1.527457 ATAAAGGCCTCCATGGAGCT 58.473 50.000 32.97 23.24 40.69 4.09
4041 4542 0.839946 TAAAGGCCTCCATGGAGCTC 59.160 55.000 32.97 25.21 40.69 4.09
4042 4543 1.210204 AAAGGCCTCCATGGAGCTCA 61.210 55.000 32.97 2.79 40.69 4.26
4043 4544 1.633915 AAGGCCTCCATGGAGCTCAG 61.634 60.000 32.97 21.23 40.69 3.35
4044 4545 2.373707 GGCCTCCATGGAGCTCAGT 61.374 63.158 32.97 0.00 40.69 3.41
4045 4546 1.145819 GCCTCCATGGAGCTCAGTC 59.854 63.158 32.97 14.41 40.69 3.51
4046 4547 1.336632 GCCTCCATGGAGCTCAGTCT 61.337 60.000 32.97 0.00 40.69 3.24
4047 4548 0.752054 CCTCCATGGAGCTCAGTCTC 59.248 60.000 32.97 0.00 40.69 3.36
4055 4556 1.377536 GAGCTCAGTCTCCATTTGGC 58.622 55.000 9.40 0.00 34.44 4.52
4056 4557 0.694771 AGCTCAGTCTCCATTTGGCA 59.305 50.000 0.00 0.00 34.44 4.92
4057 4558 1.284198 AGCTCAGTCTCCATTTGGCAT 59.716 47.619 0.00 0.00 34.44 4.40
4058 4559 2.097825 GCTCAGTCTCCATTTGGCATT 58.902 47.619 0.00 0.00 34.44 3.56
4059 4560 2.494870 GCTCAGTCTCCATTTGGCATTT 59.505 45.455 0.00 0.00 34.44 2.32
4060 4561 3.056322 GCTCAGTCTCCATTTGGCATTTT 60.056 43.478 0.00 0.00 34.44 1.82
4061 4562 4.158394 GCTCAGTCTCCATTTGGCATTTTA 59.842 41.667 0.00 0.00 34.44 1.52
4062 4563 5.678107 GCTCAGTCTCCATTTGGCATTTTAG 60.678 44.000 0.00 0.00 34.44 1.85
4149 4650 1.210672 GATAGCTCTACTCGCCGCC 59.789 63.158 0.00 0.00 0.00 6.13
4166 4667 1.880894 CCGTCCTTGCAGTAGTCGA 59.119 57.895 0.00 0.00 0.00 4.20
4295 4796 2.147958 GCCGAATGTTGTGGTACTTCA 58.852 47.619 0.00 0.00 0.00 3.02
4300 4801 0.882927 TGTTGTGGTACTTCAGCGGC 60.883 55.000 0.00 0.00 0.00 6.53
4381 4882 1.001268 GCAGTGACAGAGAAGACGACA 60.001 52.381 0.00 0.00 0.00 4.35
4385 4886 2.021457 TGACAGAGAAGACGACACACA 58.979 47.619 0.00 0.00 0.00 3.72
4406 4907 0.900647 CAGAGAGGGAGGTGACGGTT 60.901 60.000 0.00 0.00 0.00 4.44
4423 4924 2.030185 CGGTTTCAGAGTCGAGGAAGAA 60.030 50.000 0.00 0.00 0.00 2.52
4481 4982 0.250513 GAGGCGACAAGGGATCTGTT 59.749 55.000 0.00 0.00 0.00 3.16
4493 4994 0.460987 GATCTGTTGGAGGCGGTGAG 60.461 60.000 0.00 0.00 0.00 3.51
4509 5010 1.519455 GAGACTCGATTGGTGGCCG 60.519 63.158 0.00 0.00 0.00 6.13
4577 5078 1.987704 GCGGCGTAAATGGATGTGCA 61.988 55.000 9.37 0.00 0.00 4.57
4579 5080 0.248621 GGCGTAAATGGATGTGCAGC 60.249 55.000 0.00 0.00 0.00 5.25
4580 5081 0.451383 GCGTAAATGGATGTGCAGCA 59.549 50.000 0.00 0.00 0.00 4.41
4650 5151 4.096003 CCAATCGGCCGGTGTCCT 62.096 66.667 27.83 0.00 0.00 3.85
4651 5152 2.727392 CCAATCGGCCGGTGTCCTA 61.727 63.158 27.83 3.54 0.00 2.94
4845 5475 2.695147 CCCCTCCCACAATATTGCTTTC 59.305 50.000 15.48 0.00 0.00 2.62
4846 5476 3.364549 CCCTCCCACAATATTGCTTTCA 58.635 45.455 15.48 0.00 0.00 2.69
4859 5489 4.927267 TTGCTTTCAGGGGATCTTCTAA 57.073 40.909 0.00 0.00 0.00 2.10
4930 5605 4.993705 AAATGGGTACTCCTTCTGTTCA 57.006 40.909 0.00 0.00 36.20 3.18
4939 5614 6.940867 GGTACTCCTTCTGTTCAGGTTTATTT 59.059 38.462 0.00 0.00 32.59 1.40
4941 5616 6.601332 ACTCCTTCTGTTCAGGTTTATTTGA 58.399 36.000 0.00 0.00 32.59 2.69
5228 5919 0.609131 AAGTCCCATTTGTCTGCGGG 60.609 55.000 0.00 0.00 40.32 6.13
5229 5920 2.046285 GTCCCATTTGTCTGCGGGG 61.046 63.158 0.00 0.00 39.34 5.73
5366 6061 9.831737 CTTAGATTTAGGTCTGTGTGATTTTTG 57.168 33.333 0.00 0.00 0.00 2.44
5368 6063 7.875971 AGATTTAGGTCTGTGTGATTTTTGAC 58.124 34.615 0.00 0.00 0.00 3.18
5418 6115 3.007940 TGTGGCAGACAGTAGCTATGTTT 59.992 43.478 0.00 0.00 0.00 2.83
5438 6135 6.414732 TGTTTTGTCTGTAGGGATCTTATGG 58.585 40.000 0.00 0.00 0.00 2.74
5486 6183 2.159254 GGCAAGTGCTTTTGTGTCTCAA 60.159 45.455 2.85 0.00 41.70 3.02
5490 6187 4.361451 AGTGCTTTTGTGTCTCAACTTG 57.639 40.909 0.00 0.00 35.61 3.16
5497 6195 6.645700 TTTTGTGTCTCAACTTGCATTTTC 57.354 33.333 0.00 0.00 35.61 2.29
5554 6252 6.659668 GCCTTTTCTCCTTCTTACCTTAACAT 59.340 38.462 0.00 0.00 0.00 2.71
5555 6253 7.362142 GCCTTTTCTCCTTCTTACCTTAACATG 60.362 40.741 0.00 0.00 0.00 3.21
5625 6323 3.585732 CCCCTTCTCCTACTACCAAAACA 59.414 47.826 0.00 0.00 0.00 2.83
5727 6425 5.290493 TCACTTCTGTTATTGACACCTGT 57.710 39.130 0.00 0.00 33.82 4.00
6003 6707 9.647797 TGACAAGAATACTACATATTTTCGTGT 57.352 29.630 0.00 0.00 40.17 4.49
6148 6853 9.787435 GATATGAACCTAAACCCAATATACACA 57.213 33.333 0.00 0.00 0.00 3.72
6177 6899 4.663334 ACCATTTTTGGTCTAAGGAGGAC 58.337 43.478 0.00 0.00 37.74 3.85
6178 6900 4.354087 ACCATTTTTGGTCTAAGGAGGACT 59.646 41.667 0.00 0.00 37.74 3.85
6179 6901 5.162980 ACCATTTTTGGTCTAAGGAGGACTT 60.163 40.000 0.00 0.00 37.74 3.01
6180 6902 6.045106 ACCATTTTTGGTCTAAGGAGGACTTA 59.955 38.462 0.00 0.00 37.74 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.757594 ACTTGAAAGATGTTTGCAAAGCA 58.242 34.783 13.26 13.78 42.58 3.91
38 39 5.723492 AACTTGAAAGATGTTTGCAAAGC 57.277 34.783 13.26 8.36 0.00 3.51
39 40 6.957077 CACAAACTTGAAAGATGTTTGCAAAG 59.043 34.615 13.26 0.00 46.44 2.77
40 41 6.648310 TCACAAACTTGAAAGATGTTTGCAAA 59.352 30.769 8.05 8.05 46.44 3.68
41 42 6.162079 TCACAAACTTGAAAGATGTTTGCAA 58.838 32.000 14.97 0.00 46.44 4.08
42 43 5.718146 TCACAAACTTGAAAGATGTTTGCA 58.282 33.333 14.97 0.00 46.44 4.08
43 44 6.833342 ATCACAAACTTGAAAGATGTTTGC 57.167 33.333 14.97 0.00 46.44 3.68
156 157 9.513727 GTTTGCAAAAATGTAAAAATGGTCAAT 57.486 25.926 14.67 0.00 0.00 2.57
157 158 8.514594 TGTTTGCAAAAATGTAAAAATGGTCAA 58.485 25.926 14.67 0.00 0.00 3.18
158 159 8.044060 TGTTTGCAAAAATGTAAAAATGGTCA 57.956 26.923 14.67 0.00 0.00 4.02
159 160 9.513727 AATGTTTGCAAAAATGTAAAAATGGTC 57.486 25.926 15.61 0.00 0.00 4.02
160 161 9.866798 AAATGTTTGCAAAAATGTAAAAATGGT 57.133 22.222 15.61 0.00 0.00 3.55
231 232 9.767228 TCATGAATTCAGAAAATGTTCACAATT 57.233 25.926 14.54 1.89 36.09 2.32
568 576 9.906660 AAAATGTTCGCATATTCAGAAAAACTA 57.093 25.926 0.00 0.00 36.70 2.24
705 722 9.886132 TTTCTGTTTCAGTTTCTTCTACTACTT 57.114 29.630 0.00 0.00 32.61 2.24
706 723 9.886132 TTTTCTGTTTCAGTTTCTTCTACTACT 57.114 29.630 0.00 0.00 32.61 2.57
840 863 0.457166 TATACAGCACGTGACGCACC 60.457 55.000 22.23 0.00 0.00 5.01
842 865 0.179148 CCTATACAGCACGTGACGCA 60.179 55.000 22.23 0.00 0.00 5.24
851 874 2.755952 TGAGCTCCTCCTATACAGCA 57.244 50.000 12.15 0.00 34.08 4.41
883 906 1.786407 AAACGGAAAGGGAGGGGGTC 61.786 60.000 0.00 0.00 0.00 4.46
1074 1097 2.432628 GTCCGCACCACCTCTTCG 60.433 66.667 0.00 0.00 0.00 3.79
1197 1220 3.302347 GAGGTGGAGCAGGTGGTCG 62.302 68.421 3.22 0.00 43.03 4.79
1240 1263 4.918201 GGAATCCAGAGGCGCCCG 62.918 72.222 26.15 12.44 0.00 6.13
1380 1418 2.214216 TGGTGAGGGTTCCTGGTCG 61.214 63.158 0.00 0.00 31.76 4.79
1383 1421 1.486726 GATAGTGGTGAGGGTTCCTGG 59.513 57.143 0.00 0.00 31.76 4.45
1486 1527 3.803082 CACCAATGCCGGACAGCG 61.803 66.667 5.05 0.00 34.65 5.18
1583 1624 2.358267 CGACTATCCTCGGCAGTAAAGT 59.642 50.000 0.00 0.00 0.00 2.66
1601 1642 6.480320 ACTTGGTAGAGAAATATGAATGCGAC 59.520 38.462 0.00 0.00 0.00 5.19
1610 1651 6.973474 CGAAACGAGACTTGGTAGAGAAATAT 59.027 38.462 0.00 0.00 0.00 1.28
1979 2057 8.673711 TGTAACCTAATTGTGATTTGCTATGAC 58.326 33.333 0.00 0.00 0.00 3.06
1985 2063 7.698130 GTCAGATGTAACCTAATTGTGATTTGC 59.302 37.037 0.00 0.00 0.00 3.68
2022 2100 6.915300 CGTTTCACAACAAGAATTATGGAACA 59.085 34.615 0.00 0.00 36.13 3.18
2039 2117 4.345859 AAAGTACTCCATCCGTTTCACA 57.654 40.909 0.00 0.00 0.00 3.58
2076 2192 7.606839 GCCATGATTGAAGATGAATAGATCAGA 59.393 37.037 0.00 0.00 42.53 3.27
2078 2194 7.228590 TGCCATGATTGAAGATGAATAGATCA 58.771 34.615 0.00 0.00 43.67 2.92
2079 2195 7.390996 ACTGCCATGATTGAAGATGAATAGATC 59.609 37.037 0.00 0.00 0.00 2.75
2080 2196 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
2081 2197 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
2082 2198 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
2083 2199 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
2084 2200 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
2085 2201 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
2086 2202 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
2087 2203 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
2088 2204 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
2089 2205 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
2090 2206 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
2091 2207 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
2092 2208 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
2093 2209 4.621068 ATTCGTTGTACTGCCATGATTG 57.379 40.909 0.00 0.00 0.00 2.67
2094 2210 6.054941 TGATATTCGTTGTACTGCCATGATT 58.945 36.000 0.00 0.00 0.00 2.57
2095 2211 5.610398 TGATATTCGTTGTACTGCCATGAT 58.390 37.500 0.00 0.00 0.00 2.45
2096 2212 5.017294 TGATATTCGTTGTACTGCCATGA 57.983 39.130 0.00 0.00 0.00 3.07
2097 2213 5.049828 TCTGATATTCGTTGTACTGCCATG 58.950 41.667 0.00 0.00 0.00 3.66
2098 2214 5.276461 TCTGATATTCGTTGTACTGCCAT 57.724 39.130 0.00 0.00 0.00 4.40
2099 2215 4.729227 TCTGATATTCGTTGTACTGCCA 57.271 40.909 0.00 0.00 0.00 4.92
2100 2216 6.604735 ATTTCTGATATTCGTTGTACTGCC 57.395 37.500 0.00 0.00 0.00 4.85
2123 2239 9.817809 GTCTGTGTCTGGATGTAATTTCTATTA 57.182 33.333 0.00 0.00 0.00 0.98
2124 2240 8.543774 AGTCTGTGTCTGGATGTAATTTCTATT 58.456 33.333 0.00 0.00 0.00 1.73
2125 2241 8.083828 AGTCTGTGTCTGGATGTAATTTCTAT 57.916 34.615 0.00 0.00 0.00 1.98
2126 2242 7.482169 AGTCTGTGTCTGGATGTAATTTCTA 57.518 36.000 0.00 0.00 0.00 2.10
2127 2243 6.365970 AGTCTGTGTCTGGATGTAATTTCT 57.634 37.500 0.00 0.00 0.00 2.52
2128 2244 7.440523 AAAGTCTGTGTCTGGATGTAATTTC 57.559 36.000 0.00 0.00 0.00 2.17
2129 2245 7.285401 ACAAAAGTCTGTGTCTGGATGTAATTT 59.715 33.333 0.00 0.00 0.00 1.82
2130 2246 6.772716 ACAAAAGTCTGTGTCTGGATGTAATT 59.227 34.615 0.00 0.00 0.00 1.40
2131 2247 6.299141 ACAAAAGTCTGTGTCTGGATGTAAT 58.701 36.000 0.00 0.00 0.00 1.89
2132 2248 5.680619 ACAAAAGTCTGTGTCTGGATGTAA 58.319 37.500 0.00 0.00 0.00 2.41
2133 2249 5.290493 ACAAAAGTCTGTGTCTGGATGTA 57.710 39.130 0.00 0.00 0.00 2.29
2134 2250 4.156455 ACAAAAGTCTGTGTCTGGATGT 57.844 40.909 0.00 0.00 0.00 3.06
2135 2251 6.808008 AATACAAAAGTCTGTGTCTGGATG 57.192 37.500 0.00 0.00 0.00 3.51
2136 2252 6.998074 TGAAATACAAAAGTCTGTGTCTGGAT 59.002 34.615 0.00 0.00 0.00 3.41
2137 2253 6.353323 TGAAATACAAAAGTCTGTGTCTGGA 58.647 36.000 0.00 0.00 0.00 3.86
2138 2254 6.618287 TGAAATACAAAAGTCTGTGTCTGG 57.382 37.500 0.00 0.00 0.00 3.86
2139 2255 7.645340 CCTTTGAAATACAAAAGTCTGTGTCTG 59.355 37.037 0.00 0.00 45.97 3.51
2140 2256 7.682021 GCCTTTGAAATACAAAAGTCTGTGTCT 60.682 37.037 0.00 0.00 45.97 3.41
2141 2257 6.417930 GCCTTTGAAATACAAAAGTCTGTGTC 59.582 38.462 0.00 0.00 45.97 3.67
2142 2258 6.273071 GCCTTTGAAATACAAAAGTCTGTGT 58.727 36.000 0.00 0.00 45.97 3.72
2143 2259 5.691754 GGCCTTTGAAATACAAAAGTCTGTG 59.308 40.000 0.00 0.00 45.97 3.66
2144 2260 5.362430 TGGCCTTTGAAATACAAAAGTCTGT 59.638 36.000 3.32 0.00 45.97 3.41
2145 2261 5.841810 TGGCCTTTGAAATACAAAAGTCTG 58.158 37.500 3.32 0.00 45.97 3.51
2146 2262 6.478512 TTGGCCTTTGAAATACAAAAGTCT 57.521 33.333 3.32 0.00 45.97 3.24
2147 2263 7.254761 CCTTTTGGCCTTTGAAATACAAAAGTC 60.255 37.037 23.94 5.50 46.42 3.01
2339 2455 6.587273 AGAAAGTTGAAGTGTAAGCTTCTCT 58.413 36.000 0.00 0.00 43.74 3.10
2439 2587 4.133013 ACATATGAACGTCCCTAACACC 57.867 45.455 10.38 0.00 0.00 4.16
3016 3432 6.419484 TCGAAATGGCTTGATAGAGGATAA 57.581 37.500 0.00 0.00 0.00 1.75
3028 3444 3.256631 ACAAAGCTCAATCGAAATGGCTT 59.743 39.130 16.90 16.90 40.97 4.35
3059 3475 2.719531 TGCAAGTTTGTACAGGGTCA 57.280 45.000 0.00 0.00 0.00 4.02
3138 3637 4.593956 AGATGTCAGCTAAAAAGAAGGGG 58.406 43.478 0.00 0.00 0.00 4.79
3302 3802 6.218938 TCCCCTAAAATAGCTTTTTCTAGGGT 59.781 38.462 29.11 11.96 37.54 4.34
3643 4144 5.236478 CCAAAATGCCCTACTCGTTATGTAG 59.764 44.000 0.00 0.00 37.66 2.74
3644 4145 5.104859 TCCAAAATGCCCTACTCGTTATGTA 60.105 40.000 0.00 0.00 0.00 2.29
3645 4146 3.945285 CCAAAATGCCCTACTCGTTATGT 59.055 43.478 0.00 0.00 0.00 2.29
3646 4147 4.196193 TCCAAAATGCCCTACTCGTTATG 58.804 43.478 0.00 0.00 0.00 1.90
3647 4148 4.163458 TCTCCAAAATGCCCTACTCGTTAT 59.837 41.667 0.00 0.00 0.00 1.89
3648 4149 3.516300 TCTCCAAAATGCCCTACTCGTTA 59.484 43.478 0.00 0.00 0.00 3.18
3649 4150 2.304761 TCTCCAAAATGCCCTACTCGTT 59.695 45.455 0.00 0.00 0.00 3.85
3650 4151 1.906574 TCTCCAAAATGCCCTACTCGT 59.093 47.619 0.00 0.00 0.00 4.18
3651 4152 2.280628 GTCTCCAAAATGCCCTACTCG 58.719 52.381 0.00 0.00 0.00 4.18
3652 4153 2.644676 GGTCTCCAAAATGCCCTACTC 58.355 52.381 0.00 0.00 0.00 2.59
3653 4154 1.065418 CGGTCTCCAAAATGCCCTACT 60.065 52.381 0.00 0.00 0.00 2.57
3654 4155 1.065709 TCGGTCTCCAAAATGCCCTAC 60.066 52.381 0.00 0.00 0.00 3.18
3655 4156 1.209504 CTCGGTCTCCAAAATGCCCTA 59.790 52.381 0.00 0.00 0.00 3.53
3656 4157 0.035056 CTCGGTCTCCAAAATGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
3657 4158 1.657751 GCTCGGTCTCCAAAATGCCC 61.658 60.000 0.00 0.00 0.00 5.36
3658 4159 0.678048 AGCTCGGTCTCCAAAATGCC 60.678 55.000 0.00 0.00 0.00 4.40
3659 4160 0.729690 GAGCTCGGTCTCCAAAATGC 59.270 55.000 0.00 0.00 0.00 3.56
3667 4168 1.739049 CTCCATGGAGCTCGGTCTC 59.261 63.158 28.45 0.00 35.31 3.36
3668 4169 3.947173 CTCCATGGAGCTCGGTCT 58.053 61.111 28.45 0.00 35.31 3.85
3676 4177 6.154363 TGTTTTAAATAAAGGGCTCCATGGAG 59.846 38.462 33.73 33.73 44.56 3.86
3677 4178 6.019748 TGTTTTAAATAAAGGGCTCCATGGA 58.980 36.000 15.27 15.27 0.00 3.41
3678 4179 6.293004 TGTTTTAAATAAAGGGCTCCATGG 57.707 37.500 4.97 4.97 0.00 3.66
3679 4180 8.791327 AATTGTTTTAAATAAAGGGCTCCATG 57.209 30.769 0.00 0.00 0.00 3.66
3680 4181 8.601546 TGAATTGTTTTAAATAAAGGGCTCCAT 58.398 29.630 0.00 0.00 0.00 3.41
3681 4182 7.967908 TGAATTGTTTTAAATAAAGGGCTCCA 58.032 30.769 0.00 0.00 0.00 3.86
3682 4183 8.840833 TTGAATTGTTTTAAATAAAGGGCTCC 57.159 30.769 0.00 0.00 0.00 4.70
3745 4246 9.955208 CTTTACATCATTGCATACATGTGTATT 57.045 29.630 9.11 0.00 39.06 1.89
3746 4247 9.123902 ACTTTACATCATTGCATACATGTGTAT 57.876 29.630 9.11 0.00 41.58 2.29
3747 4248 8.397148 CACTTTACATCATTGCATACATGTGTA 58.603 33.333 9.11 9.95 31.83 2.90
3748 4249 7.094248 ACACTTTACATCATTGCATACATGTGT 60.094 33.333 9.11 0.00 31.83 3.72
3749 4250 7.252708 ACACTTTACATCATTGCATACATGTG 58.747 34.615 9.11 0.00 31.83 3.21
3750 4251 7.395190 ACACTTTACATCATTGCATACATGT 57.605 32.000 2.69 2.69 33.95 3.21
3751 4252 9.389570 CATACACTTTACATCATTGCATACATG 57.610 33.333 0.00 0.00 0.00 3.21
3752 4253 9.123902 ACATACACTTTACATCATTGCATACAT 57.876 29.630 0.00 0.00 0.00 2.29
3753 4254 8.397148 CACATACACTTTACATCATTGCATACA 58.603 33.333 0.00 0.00 0.00 2.29
3754 4255 7.376866 GCACATACACTTTACATCATTGCATAC 59.623 37.037 0.00 0.00 0.00 2.39
3755 4256 7.416817 GCACATACACTTTACATCATTGCATA 58.583 34.615 0.00 0.00 0.00 3.14
3756 4257 6.267817 GCACATACACTTTACATCATTGCAT 58.732 36.000 0.00 0.00 0.00 3.96
3757 4258 5.639757 GCACATACACTTTACATCATTGCA 58.360 37.500 0.00 0.00 0.00 4.08
3758 4259 4.730042 CGCACATACACTTTACATCATTGC 59.270 41.667 0.00 0.00 0.00 3.56
3759 4260 6.105657 TCGCACATACACTTTACATCATTG 57.894 37.500 0.00 0.00 0.00 2.82
3760 4261 6.735678 TTCGCACATACACTTTACATCATT 57.264 33.333 0.00 0.00 0.00 2.57
3761 4262 6.735678 TTTCGCACATACACTTTACATCAT 57.264 33.333 0.00 0.00 0.00 2.45
3762 4263 6.546972 TTTTCGCACATACACTTTACATCA 57.453 33.333 0.00 0.00 0.00 3.07
3783 4284 9.710900 GTTCAAGGTATTTCATCCTGAATTTTT 57.289 29.630 0.00 0.00 36.11 1.94
3784 4285 9.093458 AGTTCAAGGTATTTCATCCTGAATTTT 57.907 29.630 0.00 0.00 36.11 1.82
3785 4286 8.526147 CAGTTCAAGGTATTTCATCCTGAATTT 58.474 33.333 0.00 0.00 36.11 1.82
3786 4287 7.671398 ACAGTTCAAGGTATTTCATCCTGAATT 59.329 33.333 0.00 0.00 36.11 2.17
3787 4288 7.121759 CACAGTTCAAGGTATTTCATCCTGAAT 59.878 37.037 0.00 0.00 36.11 2.57
3788 4289 6.430925 CACAGTTCAAGGTATTTCATCCTGAA 59.569 38.462 0.00 0.00 34.03 3.02
3789 4290 5.939883 CACAGTTCAAGGTATTTCATCCTGA 59.060 40.000 0.00 0.00 33.97 3.86
3790 4291 5.939883 TCACAGTTCAAGGTATTTCATCCTG 59.060 40.000 0.00 0.00 33.97 3.86
3791 4292 6.126863 TCACAGTTCAAGGTATTTCATCCT 57.873 37.500 0.00 0.00 35.34 3.24
3792 4293 5.163713 GCTCACAGTTCAAGGTATTTCATCC 60.164 44.000 0.00 0.00 0.00 3.51
3793 4294 5.645497 AGCTCACAGTTCAAGGTATTTCATC 59.355 40.000 0.00 0.00 0.00 2.92
3794 4295 5.413833 CAGCTCACAGTTCAAGGTATTTCAT 59.586 40.000 0.00 0.00 0.00 2.57
3795 4296 4.756642 CAGCTCACAGTTCAAGGTATTTCA 59.243 41.667 0.00 0.00 0.00 2.69
3796 4297 4.378874 GCAGCTCACAGTTCAAGGTATTTC 60.379 45.833 0.00 0.00 0.00 2.17
3797 4298 3.503748 GCAGCTCACAGTTCAAGGTATTT 59.496 43.478 0.00 0.00 0.00 1.40
3798 4299 3.077359 GCAGCTCACAGTTCAAGGTATT 58.923 45.455 0.00 0.00 0.00 1.89
3799 4300 2.038952 TGCAGCTCACAGTTCAAGGTAT 59.961 45.455 0.00 0.00 0.00 2.73
3800 4301 1.416030 TGCAGCTCACAGTTCAAGGTA 59.584 47.619 0.00 0.00 0.00 3.08
3801 4302 0.181114 TGCAGCTCACAGTTCAAGGT 59.819 50.000 0.00 0.00 0.00 3.50
3802 4303 0.590195 GTGCAGCTCACAGTTCAAGG 59.410 55.000 10.30 0.00 44.98 3.61
3828 4329 9.883142 TCAACTTTAAAGTCCATGATTTTGTTT 57.117 25.926 20.78 0.00 38.57 2.83
3829 4330 9.883142 TTCAACTTTAAAGTCCATGATTTTGTT 57.117 25.926 20.78 0.00 38.57 2.83
3830 4331 9.313118 GTTCAACTTTAAAGTCCATGATTTTGT 57.687 29.630 20.78 0.00 38.57 2.83
3831 4332 9.311916 TGTTCAACTTTAAAGTCCATGATTTTG 57.688 29.630 20.78 11.96 38.57 2.44
3832 4333 9.533253 CTGTTCAACTTTAAAGTCCATGATTTT 57.467 29.630 20.78 0.00 38.57 1.82
3833 4334 8.695456 ACTGTTCAACTTTAAAGTCCATGATTT 58.305 29.630 20.78 0.24 38.57 2.17
3834 4335 8.237811 ACTGTTCAACTTTAAAGTCCATGATT 57.762 30.769 20.78 0.99 38.57 2.57
3835 4336 7.823745 ACTGTTCAACTTTAAAGTCCATGAT 57.176 32.000 20.78 1.74 38.57 2.45
3836 4337 7.771361 TGTACTGTTCAACTTTAAAGTCCATGA 59.229 33.333 20.78 17.20 38.57 3.07
3837 4338 7.925993 TGTACTGTTCAACTTTAAAGTCCATG 58.074 34.615 20.78 15.28 38.57 3.66
3838 4339 8.691661 ATGTACTGTTCAACTTTAAAGTCCAT 57.308 30.769 20.78 3.25 38.57 3.41
3839 4340 9.787435 ATATGTACTGTTCAACTTTAAAGTCCA 57.213 29.630 20.78 13.52 38.57 4.02
3841 4342 9.543018 GCATATGTACTGTTCAACTTTAAAGTC 57.457 33.333 20.78 9.27 38.57 3.01
3842 4343 9.284968 AGCATATGTACTGTTCAACTTTAAAGT 57.715 29.630 15.22 15.22 42.04 2.66
3849 4350 8.237267 GCTTTTTAGCATATGTACTGTTCAACT 58.763 33.333 4.29 0.00 34.41 3.16
3850 4351 7.484959 GGCTTTTTAGCATATGTACTGTTCAAC 59.515 37.037 4.29 0.00 36.33 3.18
3851 4352 7.362574 GGGCTTTTTAGCATATGTACTGTTCAA 60.363 37.037 4.29 0.00 36.33 2.69
3852 4353 6.094881 GGGCTTTTTAGCATATGTACTGTTCA 59.905 38.462 4.29 0.00 36.33 3.18
3853 4354 6.459710 GGGGCTTTTTAGCATATGTACTGTTC 60.460 42.308 4.29 0.00 36.33 3.18
3854 4355 5.359860 GGGGCTTTTTAGCATATGTACTGTT 59.640 40.000 4.29 0.00 36.33 3.16
3855 4356 4.887655 GGGGCTTTTTAGCATATGTACTGT 59.112 41.667 4.29 0.00 36.33 3.55
3856 4357 4.887071 TGGGGCTTTTTAGCATATGTACTG 59.113 41.667 4.29 0.00 36.33 2.74
3857 4358 5.104109 TCTGGGGCTTTTTAGCATATGTACT 60.104 40.000 4.29 0.00 36.33 2.73
3858 4359 5.130350 TCTGGGGCTTTTTAGCATATGTAC 58.870 41.667 4.29 0.00 36.33 2.90
3859 4360 5.381184 TCTGGGGCTTTTTAGCATATGTA 57.619 39.130 4.29 0.00 36.33 2.29
3860 4361 4.249638 TCTGGGGCTTTTTAGCATATGT 57.750 40.909 4.29 0.00 36.33 2.29
3861 4362 5.796424 AATCTGGGGCTTTTTAGCATATG 57.204 39.130 0.00 0.00 36.33 1.78
3862 4363 9.774071 ATATAAATCTGGGGCTTTTTAGCATAT 57.226 29.630 0.00 0.00 36.33 1.78
3863 4364 9.600432 AATATAAATCTGGGGCTTTTTAGCATA 57.400 29.630 0.00 0.00 36.33 3.14
3864 4365 8.496534 AATATAAATCTGGGGCTTTTTAGCAT 57.503 30.769 0.00 0.00 36.33 3.79
3865 4366 7.912778 AATATAAATCTGGGGCTTTTTAGCA 57.087 32.000 0.00 0.00 36.33 3.49
3866 4367 9.613428 AAAAATATAAATCTGGGGCTTTTTAGC 57.387 29.630 0.00 0.00 0.00 3.09
3910 4411 9.423061 GTGCAAATTTTCAGGTCTAAATACATT 57.577 29.630 0.00 0.00 0.00 2.71
3911 4412 8.584157 TGTGCAAATTTTCAGGTCTAAATACAT 58.416 29.630 0.00 0.00 0.00 2.29
3912 4413 7.865385 GTGTGCAAATTTTCAGGTCTAAATACA 59.135 33.333 0.00 0.00 0.00 2.29
3913 4414 7.865385 TGTGTGCAAATTTTCAGGTCTAAATAC 59.135 33.333 0.00 0.00 0.00 1.89
3914 4415 7.946207 TGTGTGCAAATTTTCAGGTCTAAATA 58.054 30.769 0.00 0.00 0.00 1.40
3915 4416 6.815089 TGTGTGCAAATTTTCAGGTCTAAAT 58.185 32.000 0.00 0.00 0.00 1.40
3916 4417 6.214191 TGTGTGCAAATTTTCAGGTCTAAA 57.786 33.333 0.00 0.00 0.00 1.85
3917 4418 5.843673 TGTGTGCAAATTTTCAGGTCTAA 57.156 34.783 0.00 0.00 0.00 2.10
3918 4419 7.701539 ATATGTGTGCAAATTTTCAGGTCTA 57.298 32.000 0.00 0.00 0.00 2.59
3919 4420 4.942761 ATGTGTGCAAATTTTCAGGTCT 57.057 36.364 0.00 0.00 0.00 3.85
3920 4421 7.312154 TGTATATGTGTGCAAATTTTCAGGTC 58.688 34.615 0.00 0.00 0.00 3.85
3921 4422 7.225784 TGTATATGTGTGCAAATTTTCAGGT 57.774 32.000 0.00 0.00 0.00 4.00
3922 4423 8.706492 AATGTATATGTGTGCAAATTTTCAGG 57.294 30.769 0.00 0.00 0.00 3.86
3932 4433 9.218440 CCAAGATACATAATGTATATGTGTGCA 57.782 33.333 7.01 0.00 43.08 4.57
3933 4434 9.219603 ACCAAGATACATAATGTATATGTGTGC 57.780 33.333 7.01 0.00 43.08 4.57
4006 4507 9.332502 GGAGGCCTTTATTTGAAAACTTTAAAA 57.667 29.630 6.77 0.00 0.00 1.52
4007 4508 8.487028 TGGAGGCCTTTATTTGAAAACTTTAAA 58.513 29.630 6.77 0.00 0.00 1.52
4008 4509 8.024145 TGGAGGCCTTTATTTGAAAACTTTAA 57.976 30.769 6.77 0.00 0.00 1.52
4009 4510 7.604657 TGGAGGCCTTTATTTGAAAACTTTA 57.395 32.000 6.77 0.00 0.00 1.85
4010 4511 6.493189 TGGAGGCCTTTATTTGAAAACTTT 57.507 33.333 6.77 0.00 0.00 2.66
4011 4512 6.466812 CATGGAGGCCTTTATTTGAAAACTT 58.533 36.000 6.77 0.00 0.00 2.66
4012 4513 5.046376 CCATGGAGGCCTTTATTTGAAAACT 60.046 40.000 6.77 0.00 0.00 2.66
4013 4514 5.046663 TCCATGGAGGCCTTTATTTGAAAAC 60.047 40.000 11.44 0.00 37.29 2.43
4014 4515 5.090139 TCCATGGAGGCCTTTATTTGAAAA 58.910 37.500 11.44 0.00 37.29 2.29
4015 4516 4.682563 TCCATGGAGGCCTTTATTTGAAA 58.317 39.130 11.44 0.00 37.29 2.69
4016 4517 4.280819 CTCCATGGAGGCCTTTATTTGAA 58.719 43.478 31.14 0.00 38.51 2.69
4017 4518 3.902218 CTCCATGGAGGCCTTTATTTGA 58.098 45.455 31.14 3.17 38.51 2.69
4018 4519 2.363359 GCTCCATGGAGGCCTTTATTTG 59.637 50.000 36.92 13.51 42.19 2.32
4019 4520 2.245806 AGCTCCATGGAGGCCTTTATTT 59.754 45.455 36.92 13.14 42.19 1.40
4020 4521 1.855599 AGCTCCATGGAGGCCTTTATT 59.144 47.619 36.92 13.75 42.19 1.40
4021 4522 1.423161 GAGCTCCATGGAGGCCTTTAT 59.577 52.381 36.92 16.48 42.19 1.40
4022 4523 0.839946 GAGCTCCATGGAGGCCTTTA 59.160 55.000 36.92 4.58 42.19 1.85
4023 4524 1.210204 TGAGCTCCATGGAGGCCTTT 61.210 55.000 36.92 17.10 42.19 3.11
4024 4525 1.617536 TGAGCTCCATGGAGGCCTT 60.618 57.895 36.92 17.72 42.19 4.35
4025 4526 2.041762 TGAGCTCCATGGAGGCCT 59.958 61.111 36.92 27.78 42.19 5.19
4026 4527 2.322638 GACTGAGCTCCATGGAGGCC 62.323 65.000 36.92 23.97 42.19 5.19
4027 4528 1.145819 GACTGAGCTCCATGGAGGC 59.854 63.158 36.92 28.76 42.19 4.70
4028 4529 0.752054 GAGACTGAGCTCCATGGAGG 59.248 60.000 36.92 24.67 42.19 4.30
4036 4537 1.339438 TGCCAAATGGAGACTGAGCTC 60.339 52.381 6.82 6.82 37.39 4.09
4037 4538 0.694771 TGCCAAATGGAGACTGAGCT 59.305 50.000 2.98 0.00 37.39 4.09
4038 4539 1.760192 ATGCCAAATGGAGACTGAGC 58.240 50.000 2.98 0.00 37.39 4.26
4039 4540 4.796038 AAAATGCCAAATGGAGACTGAG 57.204 40.909 2.98 0.00 37.39 3.35
4040 4541 4.158394 GCTAAAATGCCAAATGGAGACTGA 59.842 41.667 2.98 0.00 37.39 3.41
4041 4542 4.159135 AGCTAAAATGCCAAATGGAGACTG 59.841 41.667 2.98 0.00 37.39 3.51
4042 4543 4.347607 AGCTAAAATGCCAAATGGAGACT 58.652 39.130 2.98 0.00 37.39 3.24
4043 4544 4.725790 AGCTAAAATGCCAAATGGAGAC 57.274 40.909 2.98 0.00 37.39 3.36
4044 4545 5.260424 TGTAGCTAAAATGCCAAATGGAGA 58.740 37.500 2.98 0.00 37.39 3.71
4045 4546 5.581126 TGTAGCTAAAATGCCAAATGGAG 57.419 39.130 2.98 0.00 37.39 3.86
4046 4547 7.123397 TGTTATGTAGCTAAAATGCCAAATGGA 59.877 33.333 2.98 0.00 37.39 3.41
4047 4548 7.222611 GTGTTATGTAGCTAAAATGCCAAATGG 59.777 37.037 0.00 0.00 38.53 3.16
4048 4549 7.975616 AGTGTTATGTAGCTAAAATGCCAAATG 59.024 33.333 0.00 0.00 0.00 2.32
4049 4550 8.066612 AGTGTTATGTAGCTAAAATGCCAAAT 57.933 30.769 0.00 0.00 0.00 2.32
4050 4551 7.461182 AGTGTTATGTAGCTAAAATGCCAAA 57.539 32.000 0.00 0.00 0.00 3.28
4051 4552 7.608376 TGTAGTGTTATGTAGCTAAAATGCCAA 59.392 33.333 0.00 0.00 0.00 4.52
4052 4553 7.106890 TGTAGTGTTATGTAGCTAAAATGCCA 58.893 34.615 0.00 0.00 0.00 4.92
4053 4554 7.548196 TGTAGTGTTATGTAGCTAAAATGCC 57.452 36.000 0.00 0.00 0.00 4.40
4054 4555 9.438291 CAATGTAGTGTTATGTAGCTAAAATGC 57.562 33.333 0.00 0.00 0.00 3.56
4057 4558 9.713713 TGTCAATGTAGTGTTATGTAGCTAAAA 57.286 29.630 0.00 0.00 0.00 1.52
4058 4559 9.884636 ATGTCAATGTAGTGTTATGTAGCTAAA 57.115 29.630 0.00 0.00 0.00 1.85
4059 4560 9.529325 GATGTCAATGTAGTGTTATGTAGCTAA 57.471 33.333 0.00 0.00 0.00 3.09
4060 4561 8.691797 TGATGTCAATGTAGTGTTATGTAGCTA 58.308 33.333 0.00 0.00 0.00 3.32
4061 4562 7.555965 TGATGTCAATGTAGTGTTATGTAGCT 58.444 34.615 0.00 0.00 0.00 3.32
4062 4563 7.770801 TGATGTCAATGTAGTGTTATGTAGC 57.229 36.000 0.00 0.00 0.00 3.58
4130 4631 1.516365 GGCGGCGAGTAGAGCTATCA 61.516 60.000 12.98 0.00 34.52 2.15
4149 4650 1.199327 TCTTCGACTACTGCAAGGACG 59.801 52.381 0.00 0.00 39.30 4.79
4345 4846 4.966787 GCCACCTCCCCAACGCAA 62.967 66.667 0.00 0.00 0.00 4.85
4381 4882 1.051812 CACCTCCCTCTCTGTTGTGT 58.948 55.000 0.00 0.00 0.00 3.72
4385 4886 0.900647 CCGTCACCTCCCTCTCTGTT 60.901 60.000 0.00 0.00 0.00 3.16
4406 4907 2.351835 CGCTTTCTTCCTCGACTCTGAA 60.352 50.000 0.00 0.00 0.00 3.02
4440 4941 2.561956 CCGTCGTCACCACCACTCT 61.562 63.158 0.00 0.00 0.00 3.24
4470 4971 1.604378 CGCCTCCAACAGATCCCTT 59.396 57.895 0.00 0.00 0.00 3.95
4481 4982 2.838748 ATCGAGTCTCACCGCCTCCA 62.839 60.000 0.00 0.00 0.00 3.86
4493 4994 3.195698 GCGGCCACCAATCGAGTC 61.196 66.667 2.24 0.00 0.00 3.36
4517 5018 1.831652 CTGCCACCTTCCTCGAACCT 61.832 60.000 0.00 0.00 0.00 3.50
4577 5078 1.427072 AAACACTAGCCCACCCTGCT 61.427 55.000 0.00 0.00 42.81 4.24
4579 5080 0.609131 CCAAACACTAGCCCACCCTG 60.609 60.000 0.00 0.00 0.00 4.45
4580 5081 1.767692 CCAAACACTAGCCCACCCT 59.232 57.895 0.00 0.00 0.00 4.34
4650 5151 0.180171 CATTCATGGCGTGGGGACTA 59.820 55.000 6.90 0.00 0.00 2.59
4651 5152 1.077501 CATTCATGGCGTGGGGACT 60.078 57.895 6.90 0.00 0.00 3.85
4713 5214 4.012374 CTCTAGCCCATTTTTGCTCTTGA 58.988 43.478 0.00 0.00 39.00 3.02
4715 5216 4.268359 CTCTCTAGCCCATTTTTGCTCTT 58.732 43.478 0.00 0.00 39.00 2.85
4742 5243 6.916360 AAATAGCTTTTGATCCTCCAAACA 57.084 33.333 0.00 0.00 35.95 2.83
4784 5411 1.079490 CCCCATCTAGCAGATCCCCTA 59.921 57.143 0.00 0.00 31.32 3.53
4785 5412 0.178879 CCCCATCTAGCAGATCCCCT 60.179 60.000 0.00 0.00 31.32 4.79
4789 5416 5.249420 GGATTAAACCCCATCTAGCAGATC 58.751 45.833 0.00 0.00 31.32 2.75
4790 5417 4.043435 GGGATTAAACCCCATCTAGCAGAT 59.957 45.833 9.69 0.00 43.81 2.90
4791 5418 3.394606 GGGATTAAACCCCATCTAGCAGA 59.605 47.826 9.69 0.00 43.81 4.26
4792 5419 3.756117 GGGATTAAACCCCATCTAGCAG 58.244 50.000 9.69 0.00 43.81 4.24
4845 5475 3.217626 GGCATGTTTAGAAGATCCCCTG 58.782 50.000 0.00 0.00 0.00 4.45
4846 5476 2.175715 GGGCATGTTTAGAAGATCCCCT 59.824 50.000 0.00 0.00 0.00 4.79
4930 5605 1.633945 ACGAGGGGCTCAAATAAACCT 59.366 47.619 0.00 0.00 0.00 3.50
4939 5614 3.452990 TGACATTAAATACGAGGGGCTCA 59.547 43.478 0.00 0.00 0.00 4.26
4941 5616 4.497291 TTGACATTAAATACGAGGGGCT 57.503 40.909 0.00 0.00 0.00 5.19
5008 5684 7.947782 AAGAGGATTCCCACTACCATATAAA 57.052 36.000 0.00 0.00 32.83 1.40
5198 5889 7.330208 CAGACAAATGGGACTTTTCAATGATTC 59.670 37.037 0.00 0.00 0.00 2.52
5211 5902 2.046285 CCCCGCAGACAAATGGGAC 61.046 63.158 0.00 0.00 44.88 4.46
5228 5919 9.220767 ACAAGTAATCAATTTAGAGAGAACACC 57.779 33.333 0.00 0.00 0.00 4.16
5355 6050 5.050837 GCTCCACATTTGTCAAAAATCACAC 60.051 40.000 1.31 0.00 0.00 3.82
5366 6061 3.367703 CCCAAATCTGCTCCACATTTGTC 60.368 47.826 0.00 0.00 36.27 3.18
5368 6063 2.093869 CCCCAAATCTGCTCCACATTTG 60.094 50.000 0.00 0.00 37.29 2.32
5418 6115 7.931015 ATAACCATAAGATCCCTACAGACAA 57.069 36.000 0.00 0.00 0.00 3.18
5452 6149 9.168353 CAAAAGCACTTGCCAAAATTTAATAAC 57.832 29.630 0.00 0.00 43.38 1.89
5453 6150 8.897752 ACAAAAGCACTTGCCAAAATTTAATAA 58.102 25.926 0.00 0.00 43.38 1.40
5459 6156 4.009002 ACACAAAAGCACTTGCCAAAATT 58.991 34.783 0.00 0.00 43.38 1.82
5460 6157 3.608796 ACACAAAAGCACTTGCCAAAAT 58.391 36.364 0.00 0.00 43.38 1.82
5516 6214 4.082733 GGAGAAAAGGCAAACACCTATGAC 60.083 45.833 0.00 0.00 39.93 3.06
5596 6294 5.851138 TGGTAGTAGGAGAAGGGGTTTTAAA 59.149 40.000 0.00 0.00 0.00 1.52
5625 6323 5.086621 AGCCACCATTTCTCAAACCTAAAT 58.913 37.500 0.00 0.00 0.00 1.40
5802 6500 7.929941 AATTCCTGGAGTAGATCTTTGTTTC 57.070 36.000 0.00 0.00 0.00 2.78
5803 6501 7.944554 TCAAATTCCTGGAGTAGATCTTTGTTT 59.055 33.333 0.00 0.00 0.00 2.83
5804 6502 7.461749 TCAAATTCCTGGAGTAGATCTTTGTT 58.538 34.615 0.00 0.00 0.00 2.83
5909 6613 5.940617 TCTCTTCCTTCTTCCAAATGTCAA 58.059 37.500 0.00 0.00 0.00 3.18
5990 6694 6.487331 TGGTTTTCCACTACACGAAAATATGT 59.513 34.615 0.00 0.00 46.22 2.29
6169 6891 3.011032 TCCTCGGTAACTAAGTCCTCCTT 59.989 47.826 0.00 0.00 37.17 3.36
6170 6892 2.579860 TCCTCGGTAACTAAGTCCTCCT 59.420 50.000 0.00 0.00 0.00 3.69
6171 6893 2.950975 CTCCTCGGTAACTAAGTCCTCC 59.049 54.545 0.00 0.00 0.00 4.30
6172 6894 2.950975 CCTCCTCGGTAACTAAGTCCTC 59.049 54.545 0.00 0.00 0.00 3.71
6173 6895 2.579860 TCCTCCTCGGTAACTAAGTCCT 59.420 50.000 0.00 0.00 0.00 3.85
6174 6896 2.950975 CTCCTCCTCGGTAACTAAGTCC 59.049 54.545 0.00 0.00 0.00 3.85
6175 6897 3.883669 TCTCCTCCTCGGTAACTAAGTC 58.116 50.000 0.00 0.00 0.00 3.01
6176 6898 4.313020 TTCTCCTCCTCGGTAACTAAGT 57.687 45.455 0.00 0.00 0.00 2.24
6177 6899 6.715718 TGATATTCTCCTCCTCGGTAACTAAG 59.284 42.308 0.00 0.00 0.00 2.18
6178 6900 6.607970 TGATATTCTCCTCCTCGGTAACTAA 58.392 40.000 0.00 0.00 0.00 2.24
6179 6901 6.196918 TGATATTCTCCTCCTCGGTAACTA 57.803 41.667 0.00 0.00 0.00 2.24
6180 6902 5.063017 TGATATTCTCCTCCTCGGTAACT 57.937 43.478 0.00 0.00 0.00 2.24
6181 6903 5.302313 AGTTGATATTCTCCTCCTCGGTAAC 59.698 44.000 0.00 0.00 0.00 2.50
6182 6904 5.455872 AGTTGATATTCTCCTCCTCGGTAA 58.544 41.667 0.00 0.00 0.00 2.85
6183 6905 5.063017 AGTTGATATTCTCCTCCTCGGTA 57.937 43.478 0.00 0.00 0.00 4.02
6184 6906 3.917300 AGTTGATATTCTCCTCCTCGGT 58.083 45.455 0.00 0.00 0.00 4.69
6185 6907 4.946478 AAGTTGATATTCTCCTCCTCGG 57.054 45.455 0.00 0.00 0.00 4.63
6186 6908 6.885952 TCTAAGTTGATATTCTCCTCCTCG 57.114 41.667 0.00 0.00 0.00 4.63
6218 6940 9.594478 GTCTCCTTAATCTCTTCCTTAGAAAAG 57.406 37.037 0.00 0.00 30.91 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.