Multiple sequence alignment - TraesCS4A01G032100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G032100 chr4A 100.000 2304 0 0 948 3251 24828196 24825893 0.000000e+00 4255.0
1 TraesCS4A01G032100 chr4A 100.000 575 0 0 1 575 24829143 24828569 0.000000e+00 1062.0
2 TraesCS4A01G032100 chr4A 98.077 104 2 0 378 481 4005875 4005978 7.170000e-42 182.0
3 TraesCS4A01G032100 chr4A 98.969 97 1 0 385 481 7127272 7127368 1.200000e-39 174.0
4 TraesCS4A01G032100 chr4D 95.138 1563 62 9 949 2500 442738326 442739885 0.000000e+00 2453.0
5 TraesCS4A01G032100 chr4D 82.062 708 65 28 2382 3065 442740068 442740737 6.130000e-152 547.0
6 TraesCS4A01G032100 chr4D 93.213 221 11 3 159 379 442738055 442738271 4.050000e-84 322.0
7 TraesCS4A01G032100 chr4D 85.714 189 11 6 3064 3237 442740771 442740958 5.540000e-43 185.0
8 TraesCS4A01G032100 chr4B 90.972 1728 93 33 948 2624 551075243 551076958 0.000000e+00 2268.0
9 TraesCS4A01G032100 chr4B 90.876 274 20 4 2757 3026 551077639 551077911 2.380000e-96 363.0
10 TraesCS4A01G032100 chr4B 90.811 185 4 4 159 343 551073962 551074133 5.420000e-58 235.0
11 TraesCS4A01G032100 chr4B 78.492 358 47 24 2382 2727 551077299 551077638 1.180000e-49 207.0
12 TraesCS4A01G032100 chr4B 76.752 314 45 19 2382 2681 551077004 551077303 2.020000e-32 150.0
13 TraesCS4A01G032100 chr4B 96.296 54 2 0 3088 3141 551748269 551748322 4.470000e-14 89.8
14 TraesCS4A01G032100 chr1D 93.128 713 47 2 1055 1766 58960847 58960136 0.000000e+00 1044.0
15 TraesCS4A01G032100 chr6D 94.595 222 7 3 159 380 225945361 225945145 4.020000e-89 339.0
16 TraesCS4A01G032100 chr5B 98.969 97 1 0 385 481 688104332 688104236 1.200000e-39 174.0
17 TraesCS4A01G032100 chr3A 97.087 103 3 0 379 481 13241593 13241695 1.200000e-39 174.0
18 TraesCS4A01G032100 chr5A 98.000 100 1 1 383 481 531614576 531614675 4.310000e-39 172.0
19 TraesCS4A01G032100 chr5A 100.000 28 0 0 16 43 355869726 355869753 6.000000e-03 52.8
20 TraesCS4A01G032100 chr1A 98.958 96 1 0 386 481 385269113 385269208 4.310000e-39 172.0
21 TraesCS4A01G032100 chr1A 98.958 96 1 0 386 481 558592180 558592085 4.310000e-39 172.0
22 TraesCS4A01G032100 chr1A 98.958 96 1 0 386 481 572746836 572746931 4.310000e-39 172.0
23 TraesCS4A01G032100 chr1A 98.958 96 1 0 386 481 585628430 585628335 4.310000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G032100 chr4A 24825893 24829143 3250 True 2658.50 4255 100.00000 1 3251 2 chr4A.!!$R1 3250
1 TraesCS4A01G032100 chr4D 442738055 442740958 2903 False 876.75 2453 89.03175 159 3237 4 chr4D.!!$F1 3078
2 TraesCS4A01G032100 chr4B 551073962 551077911 3949 False 644.60 2268 85.58060 159 3026 5 chr4B.!!$F2 2867
3 TraesCS4A01G032100 chr1D 58960136 58960847 711 True 1044.00 1044 93.12800 1055 1766 1 chr1D.!!$R1 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.032952 CTTTTCACACGACGGAGGGA 59.967 55.0 0.0 0.0 0.0 4.20 F
141 142 0.323957 AGGGAGTTTACGGCAAGACC 59.676 55.0 0.0 0.0 0.0 3.85 F
566 1606 0.996762 TCTCTCCTCTCCTCCCCTCC 60.997 65.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 2633 0.615331 TGGAGCAGATGTGGAGGAAC 59.385 55.0 0.00 0.0 0.00 3.62 R
2087 3136 0.737715 GGCGATGAACTGCTTCTCGT 60.738 55.0 0.00 0.0 33.34 4.18 R
2346 3403 0.108377 ATATGAGCGACGGTGCACAA 60.108 50.0 20.43 0.0 38.89 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.490962 TTCGTCACAGTTCTGATGTATTTTT 57.509 32.000 6.83 0.00 0.00 1.94
46 47 6.969993 TTTACCCCACTCCATAATTTATGC 57.030 37.500 10.38 0.00 34.85 3.14
47 48 4.534647 ACCCCACTCCATAATTTATGCA 57.465 40.909 10.38 0.00 34.85 3.96
48 49 5.078683 ACCCCACTCCATAATTTATGCAT 57.921 39.130 3.79 3.79 34.85 3.96
49 50 5.079643 ACCCCACTCCATAATTTATGCATC 58.920 41.667 0.19 0.00 34.85 3.91
50 51 5.162947 ACCCCACTCCATAATTTATGCATCT 60.163 40.000 0.19 0.00 34.85 2.90
51 52 5.416952 CCCCACTCCATAATTTATGCATCTC 59.583 44.000 0.19 0.00 34.85 2.75
52 53 6.243900 CCCACTCCATAATTTATGCATCTCT 58.756 40.000 0.19 0.00 34.85 3.10
53 54 6.373774 CCCACTCCATAATTTATGCATCTCTC 59.626 42.308 0.19 0.00 34.85 3.20
54 55 6.373774 CCACTCCATAATTTATGCATCTCTCC 59.626 42.308 0.19 0.00 34.85 3.71
55 56 6.938596 CACTCCATAATTTATGCATCTCTCCA 59.061 38.462 0.19 0.00 34.85 3.86
56 57 7.446319 CACTCCATAATTTATGCATCTCTCCAA 59.554 37.037 0.19 0.00 34.85 3.53
57 58 7.446625 ACTCCATAATTTATGCATCTCTCCAAC 59.553 37.037 0.19 0.00 34.85 3.77
58 59 6.427853 TCCATAATTTATGCATCTCTCCAACG 59.572 38.462 0.19 0.00 34.85 4.10
59 60 4.558538 AATTTATGCATCTCTCCAACGC 57.441 40.909 0.19 0.00 0.00 4.84
60 61 1.570813 TTATGCATCTCTCCAACGCG 58.429 50.000 0.19 3.53 0.00 6.01
61 62 0.459899 TATGCATCTCTCCAACGCGT 59.540 50.000 5.58 5.58 0.00 6.01
62 63 0.391661 ATGCATCTCTCCAACGCGTT 60.392 50.000 20.79 20.79 0.00 4.84
63 64 0.602638 TGCATCTCTCCAACGCGTTT 60.603 50.000 24.21 2.38 0.00 3.60
64 65 0.517316 GCATCTCTCCAACGCGTTTT 59.483 50.000 24.21 0.00 0.00 2.43
65 66 1.069227 GCATCTCTCCAACGCGTTTTT 60.069 47.619 24.21 0.00 0.00 1.94
88 89 8.602472 TTTTACCCCACTTCATAATTTATGCT 57.398 30.769 10.92 0.00 36.14 3.79
89 90 9.702253 TTTTACCCCACTTCATAATTTATGCTA 57.298 29.630 10.92 2.31 36.14 3.49
90 91 9.702253 TTTACCCCACTTCATAATTTATGCTAA 57.298 29.630 10.92 1.97 36.14 3.09
91 92 9.702253 TTACCCCACTTCATAATTTATGCTAAA 57.298 29.630 10.92 1.36 36.14 1.85
92 93 8.602472 ACCCCACTTCATAATTTATGCTAAAA 57.398 30.769 10.92 1.06 36.14 1.52
93 94 9.041354 ACCCCACTTCATAATTTATGCTAAAAA 57.959 29.630 10.92 0.75 36.14 1.94
117 118 9.887406 AAAAATTATAGGTACACTTTTCACACG 57.113 29.630 0.00 0.00 0.00 4.49
118 119 8.836268 AAATTATAGGTACACTTTTCACACGA 57.164 30.769 0.00 0.00 0.00 4.35
119 120 7.823149 ATTATAGGTACACTTTTCACACGAC 57.177 36.000 0.00 0.00 0.00 4.34
120 121 2.466846 AGGTACACTTTTCACACGACG 58.533 47.619 0.00 0.00 0.00 5.12
121 122 1.523934 GGTACACTTTTCACACGACGG 59.476 52.381 0.00 0.00 0.00 4.79
122 123 2.462889 GTACACTTTTCACACGACGGA 58.537 47.619 0.00 0.00 0.00 4.69
123 124 1.567504 ACACTTTTCACACGACGGAG 58.432 50.000 0.00 0.00 0.00 4.63
124 125 0.859232 CACTTTTCACACGACGGAGG 59.141 55.000 0.00 0.00 0.00 4.30
125 126 0.249741 ACTTTTCACACGACGGAGGG 60.250 55.000 0.00 0.00 0.00 4.30
126 127 0.032952 CTTTTCACACGACGGAGGGA 59.967 55.000 0.00 0.00 0.00 4.20
127 128 0.032952 TTTTCACACGACGGAGGGAG 59.967 55.000 0.00 0.00 0.00 4.30
128 129 1.111116 TTTCACACGACGGAGGGAGT 61.111 55.000 0.00 0.00 0.00 3.85
129 130 1.111116 TTCACACGACGGAGGGAGTT 61.111 55.000 0.00 0.00 0.00 3.01
130 131 1.111116 TCACACGACGGAGGGAGTTT 61.111 55.000 0.00 0.00 0.00 2.66
131 132 0.599558 CACACGACGGAGGGAGTTTA 59.400 55.000 0.00 0.00 0.00 2.01
132 133 0.600057 ACACGACGGAGGGAGTTTAC 59.400 55.000 0.00 0.00 0.00 2.01
133 134 0.455633 CACGACGGAGGGAGTTTACG 60.456 60.000 0.00 0.00 0.00 3.18
134 135 1.138247 CGACGGAGGGAGTTTACGG 59.862 63.158 0.00 0.00 0.00 4.02
135 136 1.153686 GACGGAGGGAGTTTACGGC 60.154 63.158 0.00 0.00 0.00 5.68
136 137 1.880819 GACGGAGGGAGTTTACGGCA 61.881 60.000 0.00 0.00 31.79 5.69
137 138 1.294138 CGGAGGGAGTTTACGGCAA 59.706 57.895 0.00 0.00 0.00 4.52
138 139 0.739813 CGGAGGGAGTTTACGGCAAG 60.740 60.000 0.00 0.00 0.00 4.01
139 140 0.611714 GGAGGGAGTTTACGGCAAGA 59.388 55.000 0.00 0.00 0.00 3.02
140 141 1.675116 GGAGGGAGTTTACGGCAAGAC 60.675 57.143 0.00 0.00 0.00 3.01
141 142 0.323957 AGGGAGTTTACGGCAAGACC 59.676 55.000 0.00 0.00 0.00 3.85
152 153 2.460757 GGCAAGACCGTACCTAACAA 57.539 50.000 0.00 0.00 0.00 2.83
153 154 2.769893 GGCAAGACCGTACCTAACAAA 58.230 47.619 0.00 0.00 0.00 2.83
154 155 3.140623 GGCAAGACCGTACCTAACAAAA 58.859 45.455 0.00 0.00 0.00 2.44
155 156 3.754850 GGCAAGACCGTACCTAACAAAAT 59.245 43.478 0.00 0.00 0.00 1.82
156 157 4.937015 GGCAAGACCGTACCTAACAAAATA 59.063 41.667 0.00 0.00 0.00 1.40
157 158 5.587443 GGCAAGACCGTACCTAACAAAATAT 59.413 40.000 0.00 0.00 0.00 1.28
161 162 5.360714 AGACCGTACCTAACAAAATATCGGA 59.639 40.000 0.00 0.00 38.92 4.55
181 182 2.698274 GACAAACAATTCACCAACCCCT 59.302 45.455 0.00 0.00 0.00 4.79
182 183 3.892588 GACAAACAATTCACCAACCCCTA 59.107 43.478 0.00 0.00 0.00 3.53
351 352 3.246226 GCTGCAGTATATACACACAGCAC 59.754 47.826 30.17 14.94 42.74 4.40
380 1416 4.297891 CACGGCGCACACACACTG 62.298 66.667 10.83 0.00 0.00 3.66
381 1417 4.522689 ACGGCGCACACACACTGA 62.523 61.111 10.83 0.00 0.00 3.41
382 1418 4.000557 CGGCGCACACACACTGAC 62.001 66.667 10.83 0.00 0.00 3.51
383 1419 4.000557 GGCGCACACACACTGACG 62.001 66.667 10.83 0.00 0.00 4.35
384 1420 4.649954 GCGCACACACACTGACGC 62.650 66.667 0.30 0.00 40.14 5.19
385 1421 4.339809 CGCACACACACTGACGCG 62.340 66.667 3.53 3.53 38.38 6.01
386 1422 4.000557 GCACACACACTGACGCGG 62.001 66.667 12.47 0.00 0.00 6.46
387 1423 2.279186 CACACACACTGACGCGGA 60.279 61.111 12.47 0.00 0.00 5.54
388 1424 2.027605 ACACACACTGACGCGGAG 59.972 61.111 12.47 8.63 0.00 4.63
402 1438 3.551407 GGAGCCGGATCCCCTGAC 61.551 72.222 28.96 0.78 32.79 3.51
403 1439 3.917760 GAGCCGGATCCCCTGACG 61.918 72.222 9.02 0.00 0.00 4.35
404 1440 4.779733 AGCCGGATCCCCTGACGT 62.780 66.667 5.05 0.00 0.00 4.34
405 1441 2.836360 GCCGGATCCCCTGACGTA 60.836 66.667 5.05 0.00 0.00 3.57
406 1442 3.126528 CCGGATCCCCTGACGTAC 58.873 66.667 6.06 0.00 0.00 3.67
407 1443 2.719979 CGGATCCCCTGACGTACG 59.280 66.667 15.01 15.01 0.00 3.67
408 1444 2.842256 CGGATCCCCTGACGTACGG 61.842 68.421 21.06 1.19 0.00 4.02
409 1445 2.416260 GATCCCCTGACGTACGGC 59.584 66.667 21.06 18.72 0.00 5.68
410 1446 3.148031 GATCCCCTGACGTACGGCC 62.148 68.421 20.48 10.81 0.00 6.13
411 1447 3.968837 ATCCCCTGACGTACGGCCA 62.969 63.158 20.48 14.99 0.00 5.36
412 1448 4.446413 CCCCTGACGTACGGCCAC 62.446 72.222 20.48 7.80 0.00 5.01
413 1449 4.446413 CCCTGACGTACGGCCACC 62.446 72.222 20.48 2.90 0.00 4.61
414 1450 3.379445 CCTGACGTACGGCCACCT 61.379 66.667 20.48 0.00 0.00 4.00
415 1451 2.126071 CTGACGTACGGCCACCTG 60.126 66.667 20.48 0.00 0.00 4.00
416 1452 2.598099 TGACGTACGGCCACCTGA 60.598 61.111 20.48 0.00 0.00 3.86
417 1453 2.126189 GACGTACGGCCACCTGAC 60.126 66.667 21.06 0.00 0.00 3.51
418 1454 3.958822 GACGTACGGCCACCTGACG 62.959 68.421 21.06 6.95 36.05 4.35
419 1455 4.047059 CGTACGGCCACCTGACGT 62.047 66.667 7.57 0.00 43.88 4.34
420 1456 2.341176 GTACGGCCACCTGACGTT 59.659 61.111 2.24 0.00 41.53 3.99
421 1457 2.025418 GTACGGCCACCTGACGTTG 61.025 63.158 2.24 0.00 41.53 4.10
422 1458 3.229156 TACGGCCACCTGACGTTGG 62.229 63.158 2.24 6.95 41.53 3.77
426 1462 4.263572 CCACCTGACGTTGGGCCA 62.264 66.667 0.00 0.00 0.00 5.36
427 1463 2.978010 CACCTGACGTTGGGCCAC 60.978 66.667 5.23 0.00 0.00 5.01
428 1464 3.168528 ACCTGACGTTGGGCCACT 61.169 61.111 5.23 0.00 0.00 4.00
429 1465 2.669569 CCTGACGTTGGGCCACTG 60.670 66.667 5.23 3.70 0.00 3.66
430 1466 2.425592 CTGACGTTGGGCCACTGA 59.574 61.111 5.23 0.00 0.00 3.41
431 1467 1.961277 CTGACGTTGGGCCACTGAC 60.961 63.158 5.23 0.00 0.00 3.51
432 1468 3.041940 GACGTTGGGCCACTGACG 61.042 66.667 23.66 23.66 41.00 4.35
442 1478 2.734723 CACTGACGCGTGGGTCTG 60.735 66.667 20.70 18.04 40.47 3.51
443 1479 3.991051 ACTGACGCGTGGGTCTGG 61.991 66.667 20.70 14.89 39.39 3.86
444 1480 4.742201 CTGACGCGTGGGTCTGGG 62.742 72.222 20.70 5.17 37.81 4.45
446 1482 4.736896 GACGCGTGGGTCTGGGTC 62.737 72.222 20.70 0.00 40.19 4.46
452 1488 3.238497 TGGGTCTGGGTCCACACG 61.238 66.667 0.00 0.00 0.00 4.49
453 1489 3.239253 GGGTCTGGGTCCACACGT 61.239 66.667 0.00 0.00 0.00 4.49
454 1490 2.342648 GGTCTGGGTCCACACGTC 59.657 66.667 0.00 0.00 0.00 4.34
455 1491 2.504274 GGTCTGGGTCCACACGTCA 61.504 63.158 0.00 0.00 0.00 4.35
456 1492 1.006102 GTCTGGGTCCACACGTCAG 60.006 63.158 0.00 0.00 0.00 3.51
457 1493 2.357517 CTGGGTCCACACGTCAGC 60.358 66.667 0.00 0.00 0.00 4.26
458 1494 4.293648 TGGGTCCACACGTCAGCG 62.294 66.667 0.00 0.00 44.93 5.18
459 1495 3.986006 GGGTCCACACGTCAGCGA 61.986 66.667 0.00 0.00 42.00 4.93
460 1496 2.430921 GGTCCACACGTCAGCGAG 60.431 66.667 0.00 0.00 42.00 5.03
461 1497 2.335369 GTCCACACGTCAGCGAGT 59.665 61.111 0.00 0.00 42.28 4.18
474 1510 4.746951 CGAGTGCGCCGTACGTCA 62.747 66.667 15.21 6.28 46.11 4.35
475 1511 2.874780 GAGTGCGCCGTACGTCAG 60.875 66.667 15.21 6.03 46.11 3.51
476 1512 3.318539 GAGTGCGCCGTACGTCAGA 62.319 63.158 15.21 0.00 46.11 3.27
477 1513 2.874780 GTGCGCCGTACGTCAGAG 60.875 66.667 15.21 1.85 46.11 3.35
478 1514 4.111016 TGCGCCGTACGTCAGAGG 62.111 66.667 15.21 0.00 46.11 3.69
479 1515 3.807538 GCGCCGTACGTCAGAGGA 61.808 66.667 15.21 0.00 46.11 3.71
480 1516 2.403987 CGCCGTACGTCAGAGGAG 59.596 66.667 15.21 0.00 36.87 3.69
481 1517 2.396955 CGCCGTACGTCAGAGGAGT 61.397 63.158 15.21 0.00 36.87 3.85
482 1518 1.428620 GCCGTACGTCAGAGGAGTC 59.571 63.158 15.21 0.00 0.00 3.36
483 1519 1.991099 GCCGTACGTCAGAGGAGTCC 61.991 65.000 15.21 0.00 0.00 3.85
489 1525 1.649390 CGTCAGAGGAGTCCCACTCG 61.649 65.000 5.25 3.43 45.96 4.18
494 1534 4.477975 GGAGTCCCACTCGACGCG 62.478 72.222 3.53 3.53 45.96 6.01
527 1567 4.416738 GCCCCAGCCTCTGACACC 62.417 72.222 0.00 0.00 32.44 4.16
528 1568 2.608988 CCCCAGCCTCTGACACCT 60.609 66.667 0.00 0.00 32.44 4.00
556 1596 3.199946 CGCCCTCTATAGATCTCTCCTCT 59.800 52.174 2.11 0.00 0.00 3.69
557 1597 4.683400 CGCCCTCTATAGATCTCTCCTCTC 60.683 54.167 2.11 0.00 0.00 3.20
558 1598 4.385310 GCCCTCTATAGATCTCTCCTCTCC 60.385 54.167 2.11 0.00 0.00 3.71
559 1599 5.039645 CCCTCTATAGATCTCTCCTCTCCT 58.960 50.000 2.11 0.00 0.00 3.69
560 1600 5.131142 CCCTCTATAGATCTCTCCTCTCCTC 59.869 52.000 2.11 0.00 0.00 3.71
561 1601 5.131142 CCTCTATAGATCTCTCCTCTCCTCC 59.869 52.000 2.11 0.00 0.00 4.30
562 1602 5.036916 TCTATAGATCTCTCCTCTCCTCCC 58.963 50.000 0.00 0.00 0.00 4.30
563 1603 1.158007 AGATCTCTCCTCTCCTCCCC 58.842 60.000 0.00 0.00 0.00 4.81
564 1604 1.158007 GATCTCTCCTCTCCTCCCCT 58.842 60.000 0.00 0.00 0.00 4.79
565 1605 1.075536 GATCTCTCCTCTCCTCCCCTC 59.924 61.905 0.00 0.00 0.00 4.30
566 1606 0.996762 TCTCTCCTCTCCTCCCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
567 1607 2.015726 TCTCCTCTCCTCCCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
568 1608 3.036959 TCCTCTCCTCCCCTCCCC 61.037 72.222 0.00 0.00 0.00 4.81
569 1609 4.548513 CCTCTCCTCCCCTCCCCG 62.549 77.778 0.00 0.00 0.00 5.73
570 1610 3.756783 CTCTCCTCCCCTCCCCGT 61.757 72.222 0.00 0.00 0.00 5.28
571 1611 3.742248 CTCTCCTCCCCTCCCCGTC 62.742 73.684 0.00 0.00 0.00 4.79
572 1612 4.862823 CTCCTCCCCTCCCCGTCC 62.863 77.778 0.00 0.00 0.00 4.79
1501 2550 4.867599 GGAAGTACTCCGCCGCCG 62.868 72.222 0.00 0.00 33.37 6.46
1990 3039 2.278596 CCGGCATCCTGTACGACG 60.279 66.667 0.00 0.00 0.00 5.12
2217 3266 2.258591 GTGGAGAAGCTCGTCGCA 59.741 61.111 0.00 0.00 42.61 5.10
2252 3301 1.089920 CAAGCGAGGAACCCTTGATG 58.910 55.000 4.46 0.00 37.20 3.07
2276 3329 3.458163 TCGTCGCCATGGTCCTCC 61.458 66.667 14.67 0.00 0.00 4.30
2282 3335 1.371558 GCCATGGTCCTCCGGTATC 59.628 63.158 14.67 0.00 36.30 2.24
2302 3355 1.195900 CGCTCGCTCTAGTAGGATGTC 59.804 57.143 0.00 0.00 0.00 3.06
2303 3356 2.500229 GCTCGCTCTAGTAGGATGTCT 58.500 52.381 0.00 0.00 0.00 3.41
2344 3401 6.830912 TCATAACATAAGTAGGCTGCAAGAT 58.169 36.000 5.14 0.00 34.07 2.40
2345 3402 6.707608 TCATAACATAAGTAGGCTGCAAGATG 59.292 38.462 5.14 7.50 34.07 2.90
2346 3403 4.494091 ACATAAGTAGGCTGCAAGATGT 57.506 40.909 5.14 8.11 34.07 3.06
2380 3437 4.267214 CGCTCATATGAGATTTGCTATCCG 59.733 45.833 32.38 18.86 44.74 4.18
2454 3530 0.537188 TTGCGGGACTCTTCTCCATC 59.463 55.000 0.00 0.00 30.97 3.51
2462 3538 0.249405 CTCTTCTCCATCTGCTCGCC 60.249 60.000 0.00 0.00 0.00 5.54
2502 4181 5.482175 TGTTGTATTGGGGAATAAAGGTTGG 59.518 40.000 0.00 0.00 0.00 3.77
2504 4183 5.265989 TGTATTGGGGAATAAAGGTTGGTC 58.734 41.667 0.00 0.00 0.00 4.02
2509 4188 2.949644 GGGAATAAAGGTTGGTCGATGG 59.050 50.000 0.00 0.00 0.00 3.51
2510 4189 3.617284 GGAATAAAGGTTGGTCGATGGT 58.383 45.455 0.00 0.00 0.00 3.55
2511 4190 3.626217 GGAATAAAGGTTGGTCGATGGTC 59.374 47.826 0.00 0.00 0.00 4.02
2512 4191 3.992943 ATAAAGGTTGGTCGATGGTCA 57.007 42.857 0.00 0.00 0.00 4.02
2513 4192 2.649531 AAAGGTTGGTCGATGGTCAA 57.350 45.000 0.00 0.00 0.00 3.18
2514 4193 2.879103 AAGGTTGGTCGATGGTCAAT 57.121 45.000 0.00 0.00 0.00 2.57
2515 4194 2.879103 AGGTTGGTCGATGGTCAATT 57.121 45.000 0.00 0.00 0.00 2.32
2516 4195 2.436417 AGGTTGGTCGATGGTCAATTG 58.564 47.619 0.00 0.00 0.00 2.32
2519 4198 3.005367 GGTTGGTCGATGGTCAATTGTTT 59.995 43.478 5.13 0.00 0.00 2.83
2520 4199 4.500716 GGTTGGTCGATGGTCAATTGTTTT 60.501 41.667 5.13 0.00 0.00 2.43
2521 4200 4.497473 TGGTCGATGGTCAATTGTTTTC 57.503 40.909 5.13 0.00 0.00 2.29
2522 4201 3.885901 TGGTCGATGGTCAATTGTTTTCA 59.114 39.130 5.13 0.81 0.00 2.69
2523 4202 4.023279 TGGTCGATGGTCAATTGTTTTCAG 60.023 41.667 5.13 0.00 0.00 3.02
2524 4203 4.215399 GGTCGATGGTCAATTGTTTTCAGA 59.785 41.667 5.13 0.00 0.00 3.27
2525 4204 5.106157 GGTCGATGGTCAATTGTTTTCAGAT 60.106 40.000 5.13 0.00 0.00 2.90
2526 4205 6.381801 GTCGATGGTCAATTGTTTTCAGATT 58.618 36.000 5.13 0.00 0.00 2.40
2535 4214 9.125906 GTCAATTGTTTTCAGATTCTGATTCTG 57.874 33.333 16.82 18.79 40.39 3.02
2536 4215 7.811236 TCAATTGTTTTCAGATTCTGATTCTGC 59.189 33.333 16.82 9.90 40.39 4.26
2543 4222 6.475596 TCAGATTCTGATTCTGCTGTATGA 57.524 37.500 19.65 3.89 40.35 2.15
2549 4228 5.608449 TCTGATTCTGCTGTATGATTGAGG 58.392 41.667 0.00 0.00 0.00 3.86
2551 4230 2.627515 TCTGCTGTATGATTGAGGGC 57.372 50.000 0.00 0.00 0.00 5.19
2553 4232 3.308401 TCTGCTGTATGATTGAGGGCTA 58.692 45.455 0.00 0.00 0.00 3.93
2555 4234 4.164030 TCTGCTGTATGATTGAGGGCTAAA 59.836 41.667 0.00 0.00 0.00 1.85
2556 4235 5.052693 TGCTGTATGATTGAGGGCTAAAT 57.947 39.130 0.00 0.00 0.00 1.40
2558 4237 5.532406 TGCTGTATGATTGAGGGCTAAATTC 59.468 40.000 0.00 0.00 0.00 2.17
2567 4263 2.166459 GAGGGCTAAATTCAGGTTTGGC 59.834 50.000 0.00 0.00 42.63 4.52
2575 4271 2.600470 TTCAGGTTTGGCTGCTTTTG 57.400 45.000 0.00 0.00 0.00 2.44
2583 4279 2.574006 TGGCTGCTTTTGTGATCTCT 57.426 45.000 0.00 0.00 0.00 3.10
2584 4280 2.156917 TGGCTGCTTTTGTGATCTCTG 58.843 47.619 0.00 0.00 0.00 3.35
2588 4284 4.142730 GGCTGCTTTTGTGATCTCTGTAAG 60.143 45.833 0.00 0.00 0.00 2.34
2602 4298 4.640201 TCTCTGTAAGCAAGCAAGTTTGTT 59.360 37.500 0.00 0.00 0.00 2.83
2623 4319 3.646534 TGATCATTGTCTCCTAGAGGCA 58.353 45.455 0.00 0.00 42.88 4.75
2624 4320 3.386078 TGATCATTGTCTCCTAGAGGCAC 59.614 47.826 0.00 0.00 44.32 5.01
2625 4321 2.111384 TCATTGTCTCCTAGAGGCACC 58.889 52.381 0.00 0.00 44.32 5.01
2626 4322 2.114616 CATTGTCTCCTAGAGGCACCT 58.885 52.381 0.00 0.00 44.32 4.00
2627 4323 1.561643 TTGTCTCCTAGAGGCACCTG 58.438 55.000 0.00 0.00 44.32 4.00
2628 4324 0.409876 TGTCTCCTAGAGGCACCTGT 59.590 55.000 0.00 0.00 39.51 4.00
2629 4325 1.203187 TGTCTCCTAGAGGCACCTGTT 60.203 52.381 0.00 0.00 39.51 3.16
2630 4326 1.205893 GTCTCCTAGAGGCACCTGTTG 59.794 57.143 0.00 0.00 34.02 3.33
2631 4327 0.539051 CTCCTAGAGGCACCTGTTGG 59.461 60.000 7.83 7.83 34.54 3.77
2645 4341 1.406539 CTGTTGGCTTGCTGTTCTTGT 59.593 47.619 0.00 0.00 0.00 3.16
2658 4354 4.629200 GCTGTTCTTGTGATCTTGGTAGAG 59.371 45.833 0.00 0.00 32.92 2.43
2664 4360 7.067496 TCTTGTGATCTTGGTAGAGTTTTCT 57.933 36.000 0.00 0.00 37.46 2.52
2671 4367 1.270625 TGGTAGAGTTTTCTGGGTGCG 60.271 52.381 0.00 0.00 34.79 5.34
2702 4398 2.893489 GGAAGATTGGGTGCACTCTTTT 59.107 45.455 19.48 6.77 0.00 2.27
2703 4399 3.305608 GGAAGATTGGGTGCACTCTTTTG 60.306 47.826 19.48 0.00 0.00 2.44
2704 4400 2.949447 AGATTGGGTGCACTCTTTTGT 58.051 42.857 19.48 0.00 0.00 2.83
2705 4401 2.624838 AGATTGGGTGCACTCTTTTGTG 59.375 45.455 19.48 0.00 40.62 3.33
2706 4402 1.846007 TTGGGTGCACTCTTTTGTGT 58.154 45.000 19.48 0.00 39.89 3.72
2707 4403 2.719531 TGGGTGCACTCTTTTGTGTA 57.280 45.000 19.48 0.00 39.89 2.90
2708 4404 2.571212 TGGGTGCACTCTTTTGTGTAG 58.429 47.619 19.48 0.00 39.89 2.74
2709 4405 1.266989 GGGTGCACTCTTTTGTGTAGC 59.733 52.381 17.98 6.42 45.53 3.58
2710 4406 1.946768 GGTGCACTCTTTTGTGTAGCA 59.053 47.619 17.98 0.00 45.55 3.49
2711 4407 2.031682 GGTGCACTCTTTTGTGTAGCAG 60.032 50.000 17.98 0.00 45.55 4.24
2727 4423 6.601217 TGTGTAGCAGCCATTTATGTGATTTA 59.399 34.615 0.00 0.00 0.00 1.40
2729 4425 7.805071 GTGTAGCAGCCATTTATGTGATTTATC 59.195 37.037 0.00 0.00 0.00 1.75
2730 4426 6.964807 AGCAGCCATTTATGTGATTTATCA 57.035 33.333 0.00 0.00 0.00 2.15
2731 4427 6.978338 AGCAGCCATTTATGTGATTTATCAG 58.022 36.000 0.00 0.00 37.51 2.90
2732 4428 6.774170 AGCAGCCATTTATGTGATTTATCAGA 59.226 34.615 0.00 0.00 37.51 3.27
2733 4429 6.860023 GCAGCCATTTATGTGATTTATCAGAC 59.140 38.462 0.00 0.00 37.51 3.51
2734 4430 7.469043 GCAGCCATTTATGTGATTTATCAGACA 60.469 37.037 0.00 0.00 37.51 3.41
2735 4431 8.074370 CAGCCATTTATGTGATTTATCAGACAG 58.926 37.037 0.00 0.00 37.51 3.51
2736 4432 7.994911 AGCCATTTATGTGATTTATCAGACAGA 59.005 33.333 0.00 0.00 37.51 3.41
2737 4433 8.072567 GCCATTTATGTGATTTATCAGACAGAC 58.927 37.037 0.00 0.00 37.51 3.51
2738 4434 9.112725 CCATTTATGTGATTTATCAGACAGACA 57.887 33.333 0.00 0.00 37.51 3.41
2741 4437 8.932945 TTATGTGATTTATCAGACAGACAGAC 57.067 34.615 0.00 0.00 37.51 3.51
2742 4438 6.345096 TGTGATTTATCAGACAGACAGACA 57.655 37.500 0.00 0.00 37.51 3.41
2743 4439 6.393171 TGTGATTTATCAGACAGACAGACAG 58.607 40.000 0.00 0.00 37.51 3.51
2744 4440 6.209391 TGTGATTTATCAGACAGACAGACAGA 59.791 38.462 0.00 0.00 37.51 3.41
2745 4441 6.529829 GTGATTTATCAGACAGACAGACAGAC 59.470 42.308 0.00 0.00 37.51 3.51
2746 4442 6.209391 TGATTTATCAGACAGACAGACAGACA 59.791 38.462 0.00 0.00 32.11 3.41
2747 4443 5.635417 TTATCAGACAGACAGACAGACAG 57.365 43.478 0.00 0.00 0.00 3.51
2748 4444 3.214696 TCAGACAGACAGACAGACAGA 57.785 47.619 0.00 0.00 0.00 3.41
2752 4448 1.959985 ACAGACAGACAGACAGACAGG 59.040 52.381 0.00 0.00 0.00 4.00
2759 4455 0.760567 ACAGACAGACAGGCAGGTCA 60.761 55.000 11.18 0.00 40.29 4.02
2787 4483 0.321122 GAGGACCAAGCACAGACCAG 60.321 60.000 0.00 0.00 0.00 4.00
2809 4507 7.093377 ACCAGTGCATCATTACATATTTTTGGT 60.093 33.333 0.00 0.00 0.00 3.67
2859 4557 4.202030 CCCGAGAGTTTGGTGATCTACTAC 60.202 50.000 0.00 0.00 0.00 2.73
2860 4558 4.641094 CCGAGAGTTTGGTGATCTACTACT 59.359 45.833 0.00 0.00 0.00 2.57
2898 4598 0.394565 AGTGTCCCTGTCTGTCTTGC 59.605 55.000 0.00 0.00 0.00 4.01
2910 4610 4.069232 TCTTGCCTCAGTCGCCGG 62.069 66.667 0.00 0.00 0.00 6.13
2925 4625 4.977126 CGGGCCGATACGACGAGC 62.977 72.222 24.41 0.00 35.09 5.03
2926 4626 3.593794 GGGCCGATACGACGAGCT 61.594 66.667 0.00 0.00 35.09 4.09
3011 4711 2.416680 GCTCTCAAGCTCCCAAATCT 57.583 50.000 0.00 0.00 45.55 2.40
3016 4716 1.089920 CAAGCTCCCAAATCTCACGG 58.910 55.000 0.00 0.00 0.00 4.94
3058 4766 4.440112 CCTGTGGGTTTGTTCTGACTTTTC 60.440 45.833 0.00 0.00 0.00 2.29
3061 4769 5.245075 TGTGGGTTTGTTCTGACTTTTCTTT 59.755 36.000 0.00 0.00 0.00 2.52
3086 4830 2.069273 GTCCTCTGTTTGATGGTGTCG 58.931 52.381 0.00 0.00 0.00 4.35
3120 4864 0.469494 TTCCTGCAGTGAAGCTGTGA 59.531 50.000 13.81 0.00 46.64 3.58
3129 4873 2.159099 AGTGAAGCTGTGAGTCGTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
3137 4881 1.986378 GTGAGTCGTTTGATCACTCCG 59.014 52.381 0.00 0.00 40.14 4.63
3147 4891 1.142060 TGATCACTCCGTGTGGGTTTT 59.858 47.619 0.00 0.00 46.20 2.43
3155 4899 2.424246 TCCGTGTGGGTTTTCTTTTCAC 59.576 45.455 0.00 0.00 37.00 3.18
3158 4902 3.691498 GTGTGGGTTTTCTTTTCACTCG 58.309 45.455 0.00 0.00 0.00 4.18
3161 4905 2.616842 TGGGTTTTCTTTTCACTCGAGC 59.383 45.455 13.61 0.00 0.00 5.03
3237 4996 2.356665 TTTGCTGCCACTTGGTTAGA 57.643 45.000 0.00 0.00 37.57 2.10
3238 4997 2.356665 TTGCTGCCACTTGGTTAGAA 57.643 45.000 0.00 0.00 37.57 2.10
3239 4998 2.356665 TGCTGCCACTTGGTTAGAAA 57.643 45.000 0.00 0.00 37.57 2.52
3240 4999 2.660572 TGCTGCCACTTGGTTAGAAAA 58.339 42.857 0.00 0.00 37.57 2.29
3241 5000 2.360801 TGCTGCCACTTGGTTAGAAAAC 59.639 45.455 0.00 0.00 37.57 2.43
3242 5001 2.360801 GCTGCCACTTGGTTAGAAAACA 59.639 45.455 0.00 0.00 37.34 2.83
3243 5002 3.181480 GCTGCCACTTGGTTAGAAAACAA 60.181 43.478 0.00 0.00 37.34 2.83
3244 5003 4.359706 CTGCCACTTGGTTAGAAAACAAC 58.640 43.478 0.00 0.00 37.34 3.32
3245 5004 3.764434 TGCCACTTGGTTAGAAAACAACA 59.236 39.130 0.00 0.00 37.34 3.33
3246 5005 4.220821 TGCCACTTGGTTAGAAAACAACAA 59.779 37.500 0.00 0.00 37.34 2.83
3247 5006 5.105146 TGCCACTTGGTTAGAAAACAACAAT 60.105 36.000 0.00 0.00 37.34 2.71
3248 5007 6.096987 TGCCACTTGGTTAGAAAACAACAATA 59.903 34.615 0.00 0.00 37.34 1.90
3249 5008 6.640907 GCCACTTGGTTAGAAAACAACAATAG 59.359 38.462 0.00 0.00 37.34 1.73
3250 5009 7.683463 GCCACTTGGTTAGAAAACAACAATAGT 60.683 37.037 0.00 0.00 37.34 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.490962 AAAAATACATCAGAACTGTGACGAA 57.509 32.000 0.00 0.00 0.00 3.85
21 22 7.400339 TGCATAAATTATGGAGTGGGGTAAAAA 59.600 33.333 14.11 0.00 36.68 1.94
22 23 6.897966 TGCATAAATTATGGAGTGGGGTAAAA 59.102 34.615 14.11 0.00 36.68 1.52
23 24 6.436027 TGCATAAATTATGGAGTGGGGTAAA 58.564 36.000 14.11 0.00 36.68 2.01
24 25 6.019656 TGCATAAATTATGGAGTGGGGTAA 57.980 37.500 14.11 0.00 36.68 2.85
25 26 5.654901 TGCATAAATTATGGAGTGGGGTA 57.345 39.130 14.11 0.00 36.68 3.69
26 27 4.534647 TGCATAAATTATGGAGTGGGGT 57.465 40.909 14.11 0.00 36.68 4.95
27 28 5.327732 AGATGCATAAATTATGGAGTGGGG 58.672 41.667 14.11 0.00 39.90 4.96
28 29 6.243900 AGAGATGCATAAATTATGGAGTGGG 58.756 40.000 14.11 0.00 39.90 4.61
29 30 6.373774 GGAGAGATGCATAAATTATGGAGTGG 59.626 42.308 14.11 0.00 39.90 4.00
30 31 6.938596 TGGAGAGATGCATAAATTATGGAGTG 59.061 38.462 14.11 0.00 39.90 3.51
31 32 7.083062 TGGAGAGATGCATAAATTATGGAGT 57.917 36.000 14.11 3.89 39.90 3.85
32 33 7.360691 CGTTGGAGAGATGCATAAATTATGGAG 60.361 40.741 14.11 0.00 39.90 3.86
33 34 6.427853 CGTTGGAGAGATGCATAAATTATGGA 59.572 38.462 14.11 11.93 40.83 3.41
34 35 6.605849 CGTTGGAGAGATGCATAAATTATGG 58.394 40.000 14.11 0.00 36.68 2.74
35 36 6.082338 GCGTTGGAGAGATGCATAAATTATG 58.918 40.000 8.55 8.55 39.18 1.90
36 37 5.106948 CGCGTTGGAGAGATGCATAAATTAT 60.107 40.000 0.00 0.00 0.00 1.28
37 38 4.211164 CGCGTTGGAGAGATGCATAAATTA 59.789 41.667 0.00 0.00 0.00 1.40
38 39 3.002656 CGCGTTGGAGAGATGCATAAATT 59.997 43.478 0.00 0.00 0.00 1.82
39 40 2.545526 CGCGTTGGAGAGATGCATAAAT 59.454 45.455 0.00 0.00 0.00 1.40
40 41 1.933181 CGCGTTGGAGAGATGCATAAA 59.067 47.619 0.00 0.00 0.00 1.40
41 42 1.134818 ACGCGTTGGAGAGATGCATAA 60.135 47.619 5.58 0.00 0.00 1.90
42 43 0.459899 ACGCGTTGGAGAGATGCATA 59.540 50.000 5.58 0.00 0.00 3.14
43 44 0.391661 AACGCGTTGGAGAGATGCAT 60.392 50.000 26.00 0.00 0.00 3.96
44 45 0.602638 AAACGCGTTGGAGAGATGCA 60.603 50.000 27.34 0.00 0.00 3.96
45 46 0.517316 AAAACGCGTTGGAGAGATGC 59.483 50.000 27.34 0.00 0.00 3.91
46 47 2.969443 AAAAACGCGTTGGAGAGATG 57.031 45.000 27.34 0.00 0.00 2.90
62 63 9.041354 AGCATAAATTATGAAGTGGGGTAAAAA 57.959 29.630 16.45 0.00 38.45 1.94
63 64 8.602472 AGCATAAATTATGAAGTGGGGTAAAA 57.398 30.769 16.45 0.00 38.45 1.52
64 65 9.702253 TTAGCATAAATTATGAAGTGGGGTAAA 57.298 29.630 16.45 0.00 38.45 2.01
65 66 9.702253 TTTAGCATAAATTATGAAGTGGGGTAA 57.298 29.630 16.45 1.90 38.45 2.85
66 67 9.702253 TTTTAGCATAAATTATGAAGTGGGGTA 57.298 29.630 16.45 0.00 38.45 3.69
67 68 8.602472 TTTTAGCATAAATTATGAAGTGGGGT 57.398 30.769 16.45 0.00 38.45 4.95
91 92 9.887406 CGTGTGAAAAGTGTACCTATAATTTTT 57.113 29.630 0.00 0.00 0.00 1.94
92 93 9.275398 TCGTGTGAAAAGTGTACCTATAATTTT 57.725 29.630 0.00 0.00 0.00 1.82
93 94 8.715088 GTCGTGTGAAAAGTGTACCTATAATTT 58.285 33.333 0.00 0.00 0.00 1.82
94 95 7.062605 CGTCGTGTGAAAAGTGTACCTATAATT 59.937 37.037 0.00 0.00 0.00 1.40
95 96 6.529125 CGTCGTGTGAAAAGTGTACCTATAAT 59.471 38.462 0.00 0.00 0.00 1.28
96 97 5.858049 CGTCGTGTGAAAAGTGTACCTATAA 59.142 40.000 0.00 0.00 0.00 0.98
97 98 5.393124 CGTCGTGTGAAAAGTGTACCTATA 58.607 41.667 0.00 0.00 0.00 1.31
98 99 4.232221 CGTCGTGTGAAAAGTGTACCTAT 58.768 43.478 0.00 0.00 0.00 2.57
99 100 3.550639 CCGTCGTGTGAAAAGTGTACCTA 60.551 47.826 0.00 0.00 0.00 3.08
100 101 2.466846 CGTCGTGTGAAAAGTGTACCT 58.533 47.619 0.00 0.00 0.00 3.08
101 102 1.523934 CCGTCGTGTGAAAAGTGTACC 59.476 52.381 0.00 0.00 0.00 3.34
102 103 2.462889 TCCGTCGTGTGAAAAGTGTAC 58.537 47.619 0.00 0.00 0.00 2.90
103 104 2.544277 CCTCCGTCGTGTGAAAAGTGTA 60.544 50.000 0.00 0.00 0.00 2.90
104 105 1.567504 CTCCGTCGTGTGAAAAGTGT 58.432 50.000 0.00 0.00 0.00 3.55
105 106 0.859232 CCTCCGTCGTGTGAAAAGTG 59.141 55.000 0.00 0.00 0.00 3.16
106 107 0.249741 CCCTCCGTCGTGTGAAAAGT 60.250 55.000 0.00 0.00 0.00 2.66
107 108 0.032952 TCCCTCCGTCGTGTGAAAAG 59.967 55.000 0.00 0.00 0.00 2.27
108 109 0.032952 CTCCCTCCGTCGTGTGAAAA 59.967 55.000 0.00 0.00 0.00 2.29
109 110 1.111116 ACTCCCTCCGTCGTGTGAAA 61.111 55.000 0.00 0.00 0.00 2.69
110 111 1.111116 AACTCCCTCCGTCGTGTGAA 61.111 55.000 0.00 0.00 0.00 3.18
111 112 1.111116 AAACTCCCTCCGTCGTGTGA 61.111 55.000 0.00 0.00 0.00 3.58
112 113 0.599558 TAAACTCCCTCCGTCGTGTG 59.400 55.000 0.00 0.00 0.00 3.82
113 114 0.600057 GTAAACTCCCTCCGTCGTGT 59.400 55.000 0.00 0.00 0.00 4.49
114 115 0.455633 CGTAAACTCCCTCCGTCGTG 60.456 60.000 0.00 0.00 0.00 4.35
115 116 1.589716 CCGTAAACTCCCTCCGTCGT 61.590 60.000 0.00 0.00 0.00 4.34
116 117 1.138247 CCGTAAACTCCCTCCGTCG 59.862 63.158 0.00 0.00 0.00 5.12
117 118 1.153686 GCCGTAAACTCCCTCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
118 119 1.474332 TTGCCGTAAACTCCCTCCGT 61.474 55.000 0.00 0.00 0.00 4.69
119 120 0.739813 CTTGCCGTAAACTCCCTCCG 60.740 60.000 0.00 0.00 0.00 4.63
120 121 0.611714 TCTTGCCGTAAACTCCCTCC 59.388 55.000 0.00 0.00 0.00 4.30
121 122 1.675116 GGTCTTGCCGTAAACTCCCTC 60.675 57.143 0.00 0.00 0.00 4.30
122 123 0.323957 GGTCTTGCCGTAAACTCCCT 59.676 55.000 0.00 0.00 0.00 4.20
123 124 2.850439 GGTCTTGCCGTAAACTCCC 58.150 57.895 0.00 0.00 0.00 4.30
133 134 2.460757 TTGTTAGGTACGGTCTTGCC 57.539 50.000 0.00 0.00 0.00 4.52
134 135 6.509039 CGATATTTTGTTAGGTACGGTCTTGC 60.509 42.308 0.00 0.00 0.00 4.01
135 136 6.019318 CCGATATTTTGTTAGGTACGGTCTTG 60.019 42.308 0.00 0.00 34.39 3.02
136 137 6.044682 CCGATATTTTGTTAGGTACGGTCTT 58.955 40.000 0.00 0.00 34.39 3.01
137 138 5.360714 TCCGATATTTTGTTAGGTACGGTCT 59.639 40.000 0.00 0.00 39.06 3.85
138 139 5.460091 GTCCGATATTTTGTTAGGTACGGTC 59.540 44.000 0.00 0.00 39.06 4.79
139 140 5.105392 TGTCCGATATTTTGTTAGGTACGGT 60.105 40.000 0.00 0.00 39.06 4.83
140 141 5.350633 TGTCCGATATTTTGTTAGGTACGG 58.649 41.667 0.00 0.00 39.30 4.02
141 142 6.890663 TTGTCCGATATTTTGTTAGGTACG 57.109 37.500 0.00 0.00 0.00 3.67
142 143 8.031848 TGTTTGTCCGATATTTTGTTAGGTAC 57.968 34.615 0.00 0.00 0.00 3.34
143 144 8.618702 TTGTTTGTCCGATATTTTGTTAGGTA 57.381 30.769 0.00 0.00 0.00 3.08
144 145 7.513371 TTGTTTGTCCGATATTTTGTTAGGT 57.487 32.000 0.00 0.00 0.00 3.08
145 146 8.980143 AATTGTTTGTCCGATATTTTGTTAGG 57.020 30.769 0.00 0.00 0.00 2.69
146 147 9.619316 TGAATTGTTTGTCCGATATTTTGTTAG 57.381 29.630 0.00 0.00 0.00 2.34
147 148 9.400638 GTGAATTGTTTGTCCGATATTTTGTTA 57.599 29.630 0.00 0.00 0.00 2.41
148 149 7.383843 GGTGAATTGTTTGTCCGATATTTTGTT 59.616 33.333 0.00 0.00 0.00 2.83
149 150 6.866248 GGTGAATTGTTTGTCCGATATTTTGT 59.134 34.615 0.00 0.00 0.00 2.83
150 151 6.865726 TGGTGAATTGTTTGTCCGATATTTTG 59.134 34.615 0.00 0.00 0.00 2.44
151 152 6.987386 TGGTGAATTGTTTGTCCGATATTTT 58.013 32.000 0.00 0.00 0.00 1.82
152 153 6.582677 TGGTGAATTGTTTGTCCGATATTT 57.417 33.333 0.00 0.00 0.00 1.40
153 154 6.386654 GTTGGTGAATTGTTTGTCCGATATT 58.613 36.000 0.00 0.00 0.00 1.28
154 155 5.105917 GGTTGGTGAATTGTTTGTCCGATAT 60.106 40.000 0.00 0.00 0.00 1.63
155 156 4.216687 GGTTGGTGAATTGTTTGTCCGATA 59.783 41.667 0.00 0.00 0.00 2.92
156 157 3.005367 GGTTGGTGAATTGTTTGTCCGAT 59.995 43.478 0.00 0.00 0.00 4.18
157 158 2.359531 GGTTGGTGAATTGTTTGTCCGA 59.640 45.455 0.00 0.00 0.00 4.55
161 162 2.758130 AGGGGTTGGTGAATTGTTTGT 58.242 42.857 0.00 0.00 0.00 2.83
181 182 8.773645 CAGGATTGTTTATGTTGCGAATCTATA 58.226 33.333 0.00 0.00 0.00 1.31
182 183 7.255242 CCAGGATTGTTTATGTTGCGAATCTAT 60.255 37.037 0.00 0.00 0.00 1.98
234 235 0.650512 CGTATGTGTGTGGCGAATCC 59.349 55.000 0.00 0.00 0.00 3.01
310 311 2.558359 AGCGAAAGTGAAATCAAAGGGG 59.442 45.455 0.00 0.00 0.00 4.79
314 315 3.066621 ACTGCAGCGAAAGTGAAATCAAA 59.933 39.130 15.27 0.00 0.00 2.69
369 1405 4.000557 CCGCGTCAGTGTGTGTGC 62.001 66.667 4.92 0.00 0.00 4.57
373 1409 4.664677 GGCTCCGCGTCAGTGTGT 62.665 66.667 4.92 0.00 0.00 3.72
378 1414 4.933064 GATCCGGCTCCGCGTCAG 62.933 72.222 4.92 0.91 38.24 3.51
385 1421 3.551407 GTCAGGGGATCCGGCTCC 61.551 72.222 16.35 16.35 38.33 4.70
386 1422 3.917760 CGTCAGGGGATCCGGCTC 61.918 72.222 5.45 0.00 38.33 4.70
387 1423 3.369410 TACGTCAGGGGATCCGGCT 62.369 63.158 5.45 0.00 38.33 5.52
388 1424 2.836360 TACGTCAGGGGATCCGGC 60.836 66.667 5.45 0.00 38.33 6.13
389 1425 2.842256 CGTACGTCAGGGGATCCGG 61.842 68.421 7.22 0.00 38.33 5.14
390 1426 2.719979 CGTACGTCAGGGGATCCG 59.280 66.667 7.22 0.00 38.33 4.18
391 1427 3.126528 CCGTACGTCAGGGGATCC 58.873 66.667 15.21 1.92 0.00 3.36
392 1428 2.416260 GCCGTACGTCAGGGGATC 59.584 66.667 15.21 0.00 32.45 3.36
393 1429 3.152400 GGCCGTACGTCAGGGGAT 61.152 66.667 15.21 0.00 32.45 3.85
394 1430 4.682334 TGGCCGTACGTCAGGGGA 62.682 66.667 15.21 0.00 32.45 4.81
395 1431 4.446413 GTGGCCGTACGTCAGGGG 62.446 72.222 15.21 0.00 32.45 4.79
396 1432 4.446413 GGTGGCCGTACGTCAGGG 62.446 72.222 15.21 0.00 35.13 4.45
397 1433 3.379445 AGGTGGCCGTACGTCAGG 61.379 66.667 15.21 0.00 0.00 3.86
398 1434 2.126071 CAGGTGGCCGTACGTCAG 60.126 66.667 15.21 0.00 0.00 3.51
399 1435 2.598099 TCAGGTGGCCGTACGTCA 60.598 61.111 15.21 9.40 0.00 4.35
400 1436 2.126189 GTCAGGTGGCCGTACGTC 60.126 66.667 15.21 0.00 0.00 4.34
401 1437 4.047059 CGTCAGGTGGCCGTACGT 62.047 66.667 15.21 0.00 33.91 3.57
402 1438 3.562779 AACGTCAGGTGGCCGTACG 62.563 63.158 8.69 8.69 40.48 3.67
403 1439 2.025418 CAACGTCAGGTGGCCGTAC 61.025 63.158 0.00 0.00 33.88 3.67
404 1440 2.340809 CAACGTCAGGTGGCCGTA 59.659 61.111 0.00 0.00 33.88 4.02
410 1446 2.978010 GTGGCCCAACGTCAGGTG 60.978 66.667 0.00 0.00 34.07 4.00
411 1447 3.168528 AGTGGCCCAACGTCAGGT 61.169 61.111 0.00 0.00 0.00 4.00
412 1448 2.669569 CAGTGGCCCAACGTCAGG 60.670 66.667 0.00 0.00 0.00 3.86
413 1449 1.961277 GTCAGTGGCCCAACGTCAG 60.961 63.158 0.00 0.00 0.00 3.51
414 1450 2.110213 GTCAGTGGCCCAACGTCA 59.890 61.111 0.00 0.00 0.00 4.35
415 1451 3.041940 CGTCAGTGGCCCAACGTC 61.042 66.667 0.00 0.00 0.00 4.34
425 1461 2.734723 CAGACCCACGCGTCAGTG 60.735 66.667 9.86 0.00 41.53 3.66
426 1462 3.991051 CCAGACCCACGCGTCAGT 61.991 66.667 9.86 10.11 35.07 3.41
427 1463 4.742201 CCCAGACCCACGCGTCAG 62.742 72.222 9.86 6.05 35.07 3.51
429 1465 4.736896 GACCCAGACCCACGCGTC 62.737 72.222 9.86 0.00 0.00 5.19
432 1468 4.699522 GTGGACCCAGACCCACGC 62.700 72.222 0.00 0.00 42.73 5.34
435 1471 3.238497 CGTGTGGACCCAGACCCA 61.238 66.667 10.26 0.00 36.96 4.51
436 1472 3.236003 GACGTGTGGACCCAGACCC 62.236 68.421 10.26 0.33 36.96 4.46
437 1473 2.342648 GACGTGTGGACCCAGACC 59.657 66.667 10.26 0.00 36.96 3.85
438 1474 1.006102 CTGACGTGTGGACCCAGAC 60.006 63.158 6.28 6.28 36.94 3.51
439 1475 2.867855 GCTGACGTGTGGACCCAGA 61.868 63.158 0.00 0.00 0.00 3.86
440 1476 2.357517 GCTGACGTGTGGACCCAG 60.358 66.667 0.00 0.00 0.00 4.45
441 1477 4.293648 CGCTGACGTGTGGACCCA 62.294 66.667 0.00 0.00 33.53 4.51
442 1478 3.916392 CTCGCTGACGTGTGGACCC 62.916 68.421 0.00 0.00 41.18 4.46
443 1479 2.430921 CTCGCTGACGTGTGGACC 60.431 66.667 0.00 0.00 41.18 4.46
444 1480 2.335369 ACTCGCTGACGTGTGGAC 59.665 61.111 0.00 0.00 43.76 4.02
457 1493 4.746951 TGACGTACGGCGCACTCG 62.747 66.667 21.06 6.32 46.11 4.18
458 1494 2.874780 CTGACGTACGGCGCACTC 60.875 66.667 21.06 7.29 46.11 3.51
459 1495 3.324099 CTCTGACGTACGGCGCACT 62.324 63.158 21.06 0.00 46.11 4.40
460 1496 2.874780 CTCTGACGTACGGCGCAC 60.875 66.667 21.06 2.50 46.11 5.34
461 1497 4.111016 CCTCTGACGTACGGCGCA 62.111 66.667 21.06 13.22 46.11 6.09
462 1498 3.736482 CTCCTCTGACGTACGGCGC 62.736 68.421 21.06 0.00 46.11 6.53
464 1500 1.428620 GACTCCTCTGACGTACGGC 59.571 63.158 21.06 18.72 0.00 5.68
465 1501 1.375098 GGGACTCCTCTGACGTACGG 61.375 65.000 21.06 1.50 0.00 4.02
466 1502 0.675837 TGGGACTCCTCTGACGTACG 60.676 60.000 15.01 15.01 0.00 3.67
467 1503 0.810016 GTGGGACTCCTCTGACGTAC 59.190 60.000 0.00 0.00 0.00 3.67
468 1504 0.697079 AGTGGGACTCCTCTGACGTA 59.303 55.000 0.00 0.00 35.72 3.57
469 1505 0.609681 GAGTGGGACTCCTCTGACGT 60.610 60.000 0.00 0.00 39.28 4.34
470 1506 1.649390 CGAGTGGGACTCCTCTGACG 61.649 65.000 0.00 0.00 42.12 4.35
471 1507 0.322636 TCGAGTGGGACTCCTCTGAC 60.323 60.000 0.00 0.00 42.12 3.51
472 1508 0.322636 GTCGAGTGGGACTCCTCTGA 60.323 60.000 0.00 0.00 42.12 3.27
473 1509 1.649390 CGTCGAGTGGGACTCCTCTG 61.649 65.000 0.00 0.00 42.12 3.35
474 1510 1.377463 CGTCGAGTGGGACTCCTCT 60.377 63.158 0.00 0.00 42.12 3.69
475 1511 3.053849 GCGTCGAGTGGGACTCCTC 62.054 68.421 0.00 0.00 42.12 3.71
476 1512 3.063084 GCGTCGAGTGGGACTCCT 61.063 66.667 0.00 0.00 42.12 3.69
477 1513 4.477975 CGCGTCGAGTGGGACTCC 62.478 72.222 0.00 0.00 42.12 3.85
478 1514 4.477975 CCGCGTCGAGTGGGACTC 62.478 72.222 4.92 0.00 46.57 3.36
510 1550 4.416738 GGTGTCAGAGGCTGGGGC 62.417 72.222 0.00 0.00 37.82 5.80
511 1551 2.608988 AGGTGTCAGAGGCTGGGG 60.609 66.667 0.00 0.00 31.51 4.96
512 1552 2.664081 GGAGGTGTCAGAGGCTGGG 61.664 68.421 0.00 0.00 31.51 4.45
513 1553 2.664081 GGGAGGTGTCAGAGGCTGG 61.664 68.421 0.00 0.00 31.51 4.85
514 1554 2.664081 GGGGAGGTGTCAGAGGCTG 61.664 68.421 0.00 0.00 0.00 4.85
515 1555 2.284995 GGGGAGGTGTCAGAGGCT 60.285 66.667 0.00 0.00 0.00 4.58
516 1556 3.403558 GGGGGAGGTGTCAGAGGC 61.404 72.222 0.00 0.00 0.00 4.70
535 1575 4.385310 GGAGAGGAGAGATCTATAGAGGGC 60.385 54.167 8.70 0.64 0.00 5.19
537 1577 5.131142 GGAGGAGAGGAGAGATCTATAGAGG 59.869 52.000 8.70 0.00 0.00 3.69
1584 2633 0.615331 TGGAGCAGATGTGGAGGAAC 59.385 55.000 0.00 0.00 0.00 3.62
1719 2768 4.327885 GCGTAGATGAGGCCGAAG 57.672 61.111 0.00 0.00 32.56 3.79
2087 3136 0.737715 GGCGATGAACTGCTTCTCGT 60.738 55.000 0.00 0.00 33.34 4.18
2088 3137 1.746727 CGGCGATGAACTGCTTCTCG 61.747 60.000 0.00 0.00 33.64 4.04
2217 3266 3.012518 CGCTTGGAAGTCCTTCATGAAT 58.987 45.455 8.96 0.00 41.20 2.57
2276 3329 1.390803 CTACTAGAGCGAGCGATACCG 59.609 57.143 0.00 0.00 39.16 4.02
2282 3335 1.195900 GACATCCTACTAGAGCGAGCG 59.804 57.143 0.00 0.00 0.00 5.03
2344 3401 2.964925 GAGCGACGGTGCACAACA 60.965 61.111 20.43 0.00 37.31 3.33
2345 3402 1.011968 TATGAGCGACGGTGCACAAC 61.012 55.000 20.43 8.07 38.89 3.32
2346 3403 0.108377 ATATGAGCGACGGTGCACAA 60.108 50.000 20.43 0.00 38.89 3.33
2454 3530 0.731417 CCAATCTCAAAGGCGAGCAG 59.269 55.000 0.00 0.00 32.75 4.24
2462 3538 7.543172 CCAATACAACATGTTCCAATCTCAAAG 59.457 37.037 8.48 0.00 0.00 2.77
2502 4181 5.356882 TCTGAAAACAATTGACCATCGAC 57.643 39.130 13.59 0.00 0.00 4.20
2504 4183 6.525628 CAGAATCTGAAAACAATTGACCATCG 59.474 38.462 13.59 0.00 32.44 3.84
2509 4188 9.125906 CAGAATCAGAATCTGAAAACAATTGAC 57.874 33.333 17.59 1.44 45.74 3.18
2510 4189 7.811236 GCAGAATCAGAATCTGAAAACAATTGA 59.189 33.333 17.59 0.00 45.74 2.57
2511 4190 7.813148 AGCAGAATCAGAATCTGAAAACAATTG 59.187 33.333 17.59 3.24 45.74 2.32
2512 4191 7.813148 CAGCAGAATCAGAATCTGAAAACAATT 59.187 33.333 17.59 5.65 45.74 2.32
2513 4192 7.039923 ACAGCAGAATCAGAATCTGAAAACAAT 60.040 33.333 17.59 0.00 45.74 2.71
2514 4193 6.263842 ACAGCAGAATCAGAATCTGAAAACAA 59.736 34.615 17.59 0.00 45.74 2.83
2515 4194 5.766670 ACAGCAGAATCAGAATCTGAAAACA 59.233 36.000 17.59 0.00 45.74 2.83
2516 4195 6.251655 ACAGCAGAATCAGAATCTGAAAAC 57.748 37.500 17.59 11.04 45.74 2.43
2519 4198 6.881570 TCATACAGCAGAATCAGAATCTGAA 58.118 36.000 17.59 0.95 45.74 3.02
2520 4199 6.475596 TCATACAGCAGAATCAGAATCTGA 57.524 37.500 18.34 15.97 45.74 3.27
2521 4200 7.441458 TCAATCATACAGCAGAATCAGAATCTG 59.559 37.037 10.79 10.79 45.65 2.90
2522 4201 7.506971 TCAATCATACAGCAGAATCAGAATCT 58.493 34.615 0.00 0.00 0.00 2.40
2523 4202 7.095144 CCTCAATCATACAGCAGAATCAGAATC 60.095 40.741 0.00 0.00 0.00 2.52
2524 4203 6.711194 CCTCAATCATACAGCAGAATCAGAAT 59.289 38.462 0.00 0.00 0.00 2.40
2525 4204 6.053650 CCTCAATCATACAGCAGAATCAGAA 58.946 40.000 0.00 0.00 0.00 3.02
2526 4205 5.454329 CCCTCAATCATACAGCAGAATCAGA 60.454 44.000 0.00 0.00 0.00 3.27
2535 4214 5.532406 TGAATTTAGCCCTCAATCATACAGC 59.468 40.000 0.00 0.00 0.00 4.40
2536 4215 6.206243 CCTGAATTTAGCCCTCAATCATACAG 59.794 42.308 0.00 0.00 0.00 2.74
2543 4222 4.467438 CCAAACCTGAATTTAGCCCTCAAT 59.533 41.667 0.00 0.00 0.00 2.57
2549 4228 2.675032 GCAGCCAAACCTGAATTTAGCC 60.675 50.000 0.00 0.00 34.77 3.93
2551 4230 4.525912 AAGCAGCCAAACCTGAATTTAG 57.474 40.909 0.00 0.00 34.77 1.85
2553 4232 3.843893 AAAGCAGCCAAACCTGAATTT 57.156 38.095 0.00 0.00 34.77 1.82
2555 4234 2.435437 ACAAAAGCAGCCAAACCTGAAT 59.565 40.909 0.00 0.00 34.77 2.57
2556 4235 1.830477 ACAAAAGCAGCCAAACCTGAA 59.170 42.857 0.00 0.00 34.77 3.02
2558 4237 1.136695 TCACAAAAGCAGCCAAACCTG 59.863 47.619 0.00 0.00 35.93 4.00
2567 4263 4.453478 TGCTTACAGAGATCACAAAAGCAG 59.547 41.667 16.80 0.00 41.93 4.24
2575 4271 3.999663 ACTTGCTTGCTTACAGAGATCAC 59.000 43.478 0.00 0.00 0.00 3.06
2583 4279 4.710423 TCAACAAACTTGCTTGCTTACA 57.290 36.364 0.00 0.00 0.00 2.41
2584 4280 5.280945 TGATCAACAAACTTGCTTGCTTAC 58.719 37.500 0.00 0.00 0.00 2.34
2588 4284 4.508861 ACAATGATCAACAAACTTGCTTGC 59.491 37.500 0.00 0.00 0.00 4.01
2602 4298 3.386078 GTGCCTCTAGGAGACAATGATCA 59.614 47.826 0.00 0.00 37.39 2.92
2623 4319 0.106519 AGAACAGCAAGCCAACAGGT 60.107 50.000 0.00 0.00 0.00 4.00
2624 4320 1.035139 AAGAACAGCAAGCCAACAGG 58.965 50.000 0.00 0.00 0.00 4.00
2625 4321 1.406539 ACAAGAACAGCAAGCCAACAG 59.593 47.619 0.00 0.00 0.00 3.16
2626 4322 1.134753 CACAAGAACAGCAAGCCAACA 59.865 47.619 0.00 0.00 0.00 3.33
2627 4323 1.405105 TCACAAGAACAGCAAGCCAAC 59.595 47.619 0.00 0.00 0.00 3.77
2628 4324 1.761449 TCACAAGAACAGCAAGCCAA 58.239 45.000 0.00 0.00 0.00 4.52
2629 4325 1.881973 GATCACAAGAACAGCAAGCCA 59.118 47.619 0.00 0.00 0.00 4.75
2630 4326 2.157738 AGATCACAAGAACAGCAAGCC 58.842 47.619 0.00 0.00 0.00 4.35
2631 4327 3.562505 CAAGATCACAAGAACAGCAAGC 58.437 45.455 0.00 0.00 0.00 4.01
2645 4341 4.597507 ACCCAGAAAACTCTACCAAGATCA 59.402 41.667 0.00 0.00 0.00 2.92
2658 4354 1.886542 AGAATTCCGCACCCAGAAAAC 59.113 47.619 0.65 0.00 0.00 2.43
2664 4360 1.303236 CCACAGAATTCCGCACCCA 60.303 57.895 0.65 0.00 0.00 4.51
2671 4367 3.445096 CACCCAATCTTCCACAGAATTCC 59.555 47.826 0.65 0.00 34.16 3.01
2702 4398 3.949132 TCACATAAATGGCTGCTACACA 58.051 40.909 0.00 0.00 0.00 3.72
2703 4399 5.505173 AATCACATAAATGGCTGCTACAC 57.495 39.130 0.00 0.00 0.00 2.90
2704 4400 7.501892 TGATAAATCACATAAATGGCTGCTACA 59.498 33.333 0.00 0.00 0.00 2.74
2705 4401 7.874940 TGATAAATCACATAAATGGCTGCTAC 58.125 34.615 0.00 0.00 0.00 3.58
2706 4402 7.938490 TCTGATAAATCACATAAATGGCTGCTA 59.062 33.333 0.00 0.00 32.50 3.49
2707 4403 6.774170 TCTGATAAATCACATAAATGGCTGCT 59.226 34.615 0.00 0.00 32.50 4.24
2708 4404 6.860023 GTCTGATAAATCACATAAATGGCTGC 59.140 38.462 0.00 0.00 32.50 5.25
2709 4405 7.933396 TGTCTGATAAATCACATAAATGGCTG 58.067 34.615 0.00 0.00 32.50 4.85
2710 4406 7.994911 TCTGTCTGATAAATCACATAAATGGCT 59.005 33.333 0.00 0.00 32.50 4.75
2711 4407 8.072567 GTCTGTCTGATAAATCACATAAATGGC 58.927 37.037 0.00 0.00 32.50 4.40
2727 4423 3.505680 GTCTGTCTGTCTGTCTGTCTGAT 59.494 47.826 0.00 0.00 0.00 2.90
2729 4425 2.620585 TGTCTGTCTGTCTGTCTGTCTG 59.379 50.000 0.00 0.00 0.00 3.51
2730 4426 2.884012 CTGTCTGTCTGTCTGTCTGTCT 59.116 50.000 0.00 0.00 0.00 3.41
2731 4427 2.030363 CCTGTCTGTCTGTCTGTCTGTC 60.030 54.545 0.00 0.00 0.00 3.51
2732 4428 1.959985 CCTGTCTGTCTGTCTGTCTGT 59.040 52.381 0.00 0.00 0.00 3.41
2733 4429 1.336702 GCCTGTCTGTCTGTCTGTCTG 60.337 57.143 0.00 0.00 0.00 3.51
2734 4430 0.965439 GCCTGTCTGTCTGTCTGTCT 59.035 55.000 0.00 0.00 0.00 3.41
2735 4431 0.676184 TGCCTGTCTGTCTGTCTGTC 59.324 55.000 0.00 0.00 0.00 3.51
2736 4432 0.678395 CTGCCTGTCTGTCTGTCTGT 59.322 55.000 0.00 0.00 0.00 3.41
2737 4433 0.037512 CCTGCCTGTCTGTCTGTCTG 60.038 60.000 0.00 0.00 0.00 3.51
2738 4434 0.470833 ACCTGCCTGTCTGTCTGTCT 60.471 55.000 0.00 0.00 0.00 3.41
2739 4435 0.037790 GACCTGCCTGTCTGTCTGTC 60.038 60.000 0.00 0.00 32.39 3.51
2740 4436 0.760567 TGACCTGCCTGTCTGTCTGT 60.761 55.000 4.59 0.00 36.21 3.41
2741 4437 0.394192 TTGACCTGCCTGTCTGTCTG 59.606 55.000 4.59 0.00 36.21 3.51
2742 4438 1.356124 ATTGACCTGCCTGTCTGTCT 58.644 50.000 4.59 0.00 36.21 3.41
2743 4439 2.191128 AATTGACCTGCCTGTCTGTC 57.809 50.000 4.59 0.00 36.21 3.51
2744 4440 3.009473 ACATAATTGACCTGCCTGTCTGT 59.991 43.478 4.59 0.00 36.21 3.41
2745 4441 3.614092 ACATAATTGACCTGCCTGTCTG 58.386 45.455 4.59 0.00 36.21 3.51
2746 4442 4.012374 CAACATAATTGACCTGCCTGTCT 58.988 43.478 4.59 0.00 36.21 3.41
2747 4443 4.009675 TCAACATAATTGACCTGCCTGTC 58.990 43.478 0.00 0.00 35.77 3.51
2748 4444 4.012374 CTCAACATAATTGACCTGCCTGT 58.988 43.478 0.00 0.00 0.00 4.00
2752 4448 3.378427 GGTCCTCAACATAATTGACCTGC 59.622 47.826 0.00 0.00 39.30 4.85
2759 4455 4.406456 TGTGCTTGGTCCTCAACATAATT 58.594 39.130 0.00 0.00 0.00 1.40
2809 4507 1.833630 CTGCTCACCAACCTCCAGATA 59.166 52.381 0.00 0.00 0.00 1.98
2812 4510 1.673665 GCTGCTCACCAACCTCCAG 60.674 63.158 0.00 0.00 0.00 3.86
2910 4610 1.082235 GTAGCTCGTCGTATCGGCC 60.082 63.158 0.00 0.00 0.00 6.13
2925 4625 2.878406 CCCCGCATCTGTATTTTGGTAG 59.122 50.000 0.00 0.00 0.00 3.18
2926 4626 2.506231 TCCCCGCATCTGTATTTTGGTA 59.494 45.455 0.00 0.00 0.00 3.25
2980 4680 3.194062 GCTTGAGAGCTGGTAGTGATTC 58.806 50.000 0.00 0.00 45.65 2.52
3011 4711 1.588674 CTTGCTGTTTACCACCGTGA 58.411 50.000 0.00 0.00 0.00 4.35
3016 4716 0.313987 GGCACCTTGCTGTTTACCAC 59.686 55.000 0.00 0.00 44.28 4.16
3061 4769 5.690865 ACACCATCAAACAGAGGACTAAAA 58.309 37.500 0.00 0.00 0.00 1.52
3065 4773 2.289072 CGACACCATCAAACAGAGGACT 60.289 50.000 0.00 0.00 0.00 3.85
3066 4774 2.069273 CGACACCATCAAACAGAGGAC 58.931 52.381 0.00 0.00 0.00 3.85
3068 4776 1.442769 CCGACACCATCAAACAGAGG 58.557 55.000 0.00 0.00 0.00 3.69
3069 4777 0.798776 GCCGACACCATCAAACAGAG 59.201 55.000 0.00 0.00 0.00 3.35
3070 4778 0.396435 AGCCGACACCATCAAACAGA 59.604 50.000 0.00 0.00 0.00 3.41
3071 4779 1.238439 AAGCCGACACCATCAAACAG 58.762 50.000 0.00 0.00 0.00 3.16
3086 4830 2.803133 GCAGGAACTCAAACCAAAAGCC 60.803 50.000 0.00 0.00 34.60 4.35
3137 4881 3.375922 TCGAGTGAAAAGAAAACCCACAC 59.624 43.478 0.00 0.00 0.00 3.82
3147 4891 1.623311 TCATGGGCTCGAGTGAAAAGA 59.377 47.619 15.13 3.06 0.00 2.52
3155 4899 2.288702 CCAGAAGTATCATGGGCTCGAG 60.289 54.545 8.45 8.45 0.00 4.04
3158 4902 3.643792 AGTACCAGAAGTATCATGGGCTC 59.356 47.826 0.00 0.00 38.48 4.70
3161 4905 3.005897 CGGAGTACCAGAAGTATCATGGG 59.994 52.174 0.00 0.00 38.48 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.