Multiple sequence alignment - TraesCS4A01G031400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G031400 chr4A 100.000 3494 0 0 1 3494 24555144 24558637 0.000000e+00 6453.0
1 TraesCS4A01G031400 chr4A 88.057 1189 138 4 1018 2204 600367514 600366328 0.000000e+00 1406.0
2 TraesCS4A01G031400 chr4A 94.677 263 14 0 3052 3314 207362952 207362690 3.250000e-110 409.0
3 TraesCS4A01G031400 chr4A 90.909 176 15 1 1 175 321329263 321329088 5.830000e-58 235.0
4 TraesCS4A01G031400 chr4D 96.796 1810 57 1 880 2688 443208090 443206281 0.000000e+00 3020.0
5 TraesCS4A01G031400 chr4D 85.868 1394 192 5 1018 2410 4066189 4067578 0.000000e+00 1478.0
6 TraesCS4A01G031400 chr4D 91.808 647 23 14 259 901 443208733 443208113 0.000000e+00 874.0
7 TraesCS4A01G031400 chr4D 92.258 310 22 2 2670 2979 443206267 443205960 4.140000e-119 438.0
8 TraesCS4A01G031400 chr4D 93.431 274 18 0 1 274 443209022 443208749 1.170000e-109 407.0
9 TraesCS4A01G031400 chr4D 92.513 187 14 0 1 187 145579690 145579504 5.750000e-68 268.0
10 TraesCS4A01G031400 chr4B 95.447 1823 71 1 866 2688 552746040 552744230 0.000000e+00 2896.0
11 TraesCS4A01G031400 chr4B 86.328 1397 186 5 1018 2413 4689916 4688524 0.000000e+00 1517.0
12 TraesCS4A01G031400 chr4B 93.264 193 10 2 2670 2860 552744215 552744024 7.380000e-72 281.0
13 TraesCS4A01G031400 chr4B 73.357 563 94 28 198 740 552746914 552746388 1.300000e-34 158.0
14 TraesCS4A01G031400 chr4B 90.909 66 6 0 3429 3494 28697586 28697521 4.800000e-14 89.8
15 TraesCS4A01G031400 chr5B 86.256 1397 187 5 1018 2413 641315744 641314352 0.000000e+00 1511.0
16 TraesCS4A01G031400 chr5B 81.443 194 18 7 3314 3494 491882665 491882477 3.640000e-30 143.0
17 TraesCS4A01G031400 chr7D 83.385 1294 199 13 1020 2301 617376729 617378018 0.000000e+00 1184.0
18 TraesCS4A01G031400 chr7D 89.730 185 17 2 1 184 363048740 363048923 5.830000e-58 235.0
19 TraesCS4A01G031400 chr7D 95.000 60 2 1 2996 3054 112758443 112758384 3.710000e-15 93.5
20 TraesCS4A01G031400 chr7B 83.756 1262 188 14 1023 2271 711476970 711475713 0.000000e+00 1179.0
21 TraesCS4A01G031400 chr7B 83.023 1290 205 11 1020 2301 711488064 711489347 0.000000e+00 1157.0
22 TraesCS4A01G031400 chr7B 89.189 185 18 2 1 184 322488528 322488711 2.710000e-56 230.0
23 TraesCS4A01G031400 chr6A 96.198 263 10 0 3051 3313 162832694 162832956 6.930000e-117 431.0
24 TraesCS4A01G031400 chr6A 94.253 261 14 1 3053 3313 376474046 376473787 7.030000e-107 398.0
25 TraesCS4A01G031400 chr6A 93.561 264 17 0 3051 3314 410576036 410575773 9.090000e-106 394.0
26 TraesCS4A01G031400 chr6A 78.000 150 19 14 3354 3494 11877042 11876898 8.040000e-12 82.4
27 TraesCS4A01G031400 chr2A 93.939 264 16 0 3051 3314 606519061 606519324 1.950000e-107 399.0
28 TraesCS4A01G031400 chr2A 89.773 176 17 1 1 175 193703105 193703280 1.260000e-54 224.0
29 TraesCS4A01G031400 chr7A 93.893 262 16 0 3052 3313 329488279 329488540 2.530000e-106 396.0
30 TraesCS4A01G031400 chr7A 95.000 60 2 1 2996 3054 118104277 118104218 3.710000e-15 93.5
31 TraesCS4A01G031400 chr5A 93.893 262 16 0 3052 3313 512225984 512225723 2.530000e-106 396.0
32 TraesCS4A01G031400 chr1A 93.585 265 16 1 3053 3316 572865326 572865062 9.090000e-106 394.0
33 TraesCS4A01G031400 chr2D 92.336 274 19 2 3041 3313 455942213 455942485 4.230000e-104 388.0
34 TraesCS4A01G031400 chr2D 88.360 189 18 3 1 188 82141686 82141871 1.260000e-54 224.0
35 TraesCS4A01G031400 chr2D 86.957 69 8 1 3426 3494 154845662 154845729 3.740000e-10 76.8
36 TraesCS4A01G031400 chr3D 92.398 171 13 0 1 171 698555 698725 9.690000e-61 244.0
37 TraesCS4A01G031400 chr6B 89.362 188 15 4 1 184 50480711 50480525 7.540000e-57 231.0
38 TraesCS4A01G031400 chr6B 81.026 195 17 14 3311 3494 276227000 276227185 1.690000e-28 137.0
39 TraesCS4A01G031400 chr2B 84.343 198 15 8 3311 3493 73624240 73624044 2.770000e-41 180.0
40 TraesCS4A01G031400 chr2B 84.343 198 16 11 3311 3494 798314052 798313856 2.770000e-41 180.0
41 TraesCS4A01G031400 chr2B 83.920 199 15 10 3311 3494 300557248 300557444 1.290000e-39 174.0
42 TraesCS4A01G031400 chr1B 84.422 199 14 14 3311 3494 669657625 669657429 2.770000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G031400 chr4A 24555144 24558637 3493 False 6453.000000 6453 100.00000 1 3494 1 chr4A.!!$F1 3493
1 TraesCS4A01G031400 chr4A 600366328 600367514 1186 True 1406.000000 1406 88.05700 1018 2204 1 chr4A.!!$R3 1186
2 TraesCS4A01G031400 chr4D 4066189 4067578 1389 False 1478.000000 1478 85.86800 1018 2410 1 chr4D.!!$F1 1392
3 TraesCS4A01G031400 chr4D 443205960 443209022 3062 True 1184.750000 3020 93.57325 1 2979 4 chr4D.!!$R2 2978
4 TraesCS4A01G031400 chr4B 4688524 4689916 1392 True 1517.000000 1517 86.32800 1018 2413 1 chr4B.!!$R1 1395
5 TraesCS4A01G031400 chr4B 552744024 552746914 2890 True 1111.666667 2896 87.35600 198 2860 3 chr4B.!!$R3 2662
6 TraesCS4A01G031400 chr5B 641314352 641315744 1392 True 1511.000000 1511 86.25600 1018 2413 1 chr5B.!!$R2 1395
7 TraesCS4A01G031400 chr7D 617376729 617378018 1289 False 1184.000000 1184 83.38500 1020 2301 1 chr7D.!!$F2 1281
8 TraesCS4A01G031400 chr7B 711475713 711476970 1257 True 1179.000000 1179 83.75600 1023 2271 1 chr7B.!!$R1 1248
9 TraesCS4A01G031400 chr7B 711488064 711489347 1283 False 1157.000000 1157 83.02300 1020 2301 1 chr7B.!!$F2 1281

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 650 1.003718 CTCGCGGGGTCTCCTTTTT 60.004 57.895 6.13 0.00 0.0 1.94 F
915 1224 1.787989 GCGCAACGTGAACATGATGAG 60.788 52.381 0.30 6.18 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 1734 1.00456 CAGCTCAAGTTCGCCCTCA 60.005 57.895 0.0 0.0 0.0 3.86 R
2737 3089 0.24912 CCTTCGCATGGACCTGTGTA 59.751 55.000 0.0 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 197 3.510531 AGAGAGTATATGCCTCGTGGA 57.489 47.619 7.92 0.00 34.08 4.02
365 400 6.015856 ACTCGAGAGATCAAAACTTCTCTTGA 60.016 38.462 21.68 15.57 43.55 3.02
388 423 1.492993 GCTGTGGAGGGGGAAGTCTT 61.493 60.000 0.00 0.00 0.00 3.01
400 435 6.614657 AGGGGGAAGTCTTTATATTGATTGG 58.385 40.000 0.00 0.00 0.00 3.16
480 519 6.322201 CCAGTAAAGGAGTGGCATTTCATAAT 59.678 38.462 0.00 0.00 41.89 1.28
483 522 9.646522 AGTAAAGGAGTGGCATTTCATAATATT 57.353 29.630 0.00 0.00 32.08 1.28
579 622 1.696063 ATGGCAATGGCATGTAGGAC 58.304 50.000 21.71 0.00 46.89 3.85
587 630 2.042464 TGGCATGTAGGACTGGATCTC 58.958 52.381 0.00 0.00 0.00 2.75
598 641 2.519780 GGATCTCTCTCGCGGGGT 60.520 66.667 5.94 0.00 0.00 4.95
599 642 2.557372 GGATCTCTCTCGCGGGGTC 61.557 68.421 5.94 0.00 0.00 4.46
600 643 1.527380 GATCTCTCTCGCGGGGTCT 60.527 63.158 5.94 0.00 0.00 3.85
601 644 1.512156 GATCTCTCTCGCGGGGTCTC 61.512 65.000 5.94 0.00 0.00 3.36
602 645 2.969300 ATCTCTCTCGCGGGGTCTCC 62.969 65.000 5.94 0.00 0.00 3.71
603 646 3.707640 CTCTCTCGCGGGGTCTCCT 62.708 68.421 5.94 0.00 0.00 3.69
604 647 2.756283 CTCTCGCGGGGTCTCCTT 60.756 66.667 5.94 0.00 0.00 3.36
605 648 2.283676 TCTCGCGGGGTCTCCTTT 60.284 61.111 5.94 0.00 0.00 3.11
606 649 1.889530 CTCTCGCGGGGTCTCCTTTT 61.890 60.000 5.94 0.00 0.00 2.27
607 650 1.003718 CTCGCGGGGTCTCCTTTTT 60.004 57.895 6.13 0.00 0.00 1.94
667 710 5.928976 AGTGTCCTAGCATGCATTTGTATA 58.071 37.500 21.98 0.00 0.00 1.47
718 764 8.982685 CATCAACCAATAACTATGCTAGTGTAG 58.017 37.037 0.00 0.00 39.39 2.74
773 1019 9.209175 TGGGATTGTTTTCAAAATAATTAACCG 57.791 29.630 6.33 0.00 43.39 4.44
915 1224 1.787989 GCGCAACGTGAACATGATGAG 60.788 52.381 0.30 6.18 0.00 2.90
999 1308 4.363999 CATGACGAACTGTAATCCTCTCC 58.636 47.826 0.00 0.00 0.00 3.71
1039 1348 2.521958 AATGGCTGAGAACGTCGGGG 62.522 60.000 0.00 0.00 31.26 5.73
1237 1549 3.150895 GAGCTGCTCGACGTGTTG 58.849 61.111 14.68 0.00 0.00 3.33
1419 1734 2.509336 CTTCCGCGCGATGAAGGT 60.509 61.111 34.63 0.00 35.44 3.50
1558 1873 3.756783 CCCTCCCCGTCCTCCTCT 61.757 72.222 0.00 0.00 0.00 3.69
1576 1891 1.289109 CTTGGAACACGCACCGGTAG 61.289 60.000 6.87 7.33 39.29 3.18
2233 2551 4.124351 CGGAAGCCGGCGTAGTCA 62.124 66.667 23.20 0.00 44.15 3.41
2428 2746 1.596477 GATGGACGGGCTCATGCTC 60.596 63.158 0.00 0.00 39.59 4.26
2463 2781 3.108289 CTCGGCGAGTGCAGTGTG 61.108 66.667 27.92 0.16 45.35 3.82
2637 2956 2.822561 TCAGTGTTGCTCCTAGACAGAG 59.177 50.000 0.00 0.00 0.00 3.35
2714 3066 6.519679 TCGCCGATATATTTTCCTAGCTAA 57.480 37.500 0.00 0.00 0.00 3.09
2715 3067 6.927416 TCGCCGATATATTTTCCTAGCTAAA 58.073 36.000 0.00 0.00 0.00 1.85
2718 3070 7.104290 GCCGATATATTTTCCTAGCTAAAGGT 58.896 38.462 2.42 0.00 37.91 3.50
2720 3072 7.764901 CCGATATATTTTCCTAGCTAAAGGTCC 59.235 40.741 2.42 0.00 37.91 4.46
2734 3086 2.543037 AGGTCCACACAAACCCTTTT 57.457 45.000 0.00 0.00 36.11 2.27
2736 3088 3.983821 AGGTCCACACAAACCCTTTTAA 58.016 40.909 0.00 0.00 36.11 1.52
2737 3089 4.552674 AGGTCCACACAAACCCTTTTAAT 58.447 39.130 0.00 0.00 36.11 1.40
2748 3100 5.327737 AACCCTTTTAATACACAGGTCCA 57.672 39.130 0.00 0.00 0.00 4.02
2749 3101 5.530176 ACCCTTTTAATACACAGGTCCAT 57.470 39.130 0.00 0.00 0.00 3.41
2799 3153 9.537852 TGACTAGGTTGTTAAGAGTTAGGATAA 57.462 33.333 0.00 0.00 0.00 1.75
2860 3214 7.875971 ACTTGTCTTAAGCCTTAACAGAAATG 58.124 34.615 0.00 0.00 0.00 2.32
2866 3220 7.773690 TCTTAAGCCTTAACAGAAATGGGATAC 59.226 37.037 0.00 0.00 0.00 2.24
2872 3226 7.282585 CCTTAACAGAAATGGGATACTGATCA 58.717 38.462 0.00 0.00 33.27 2.92
2888 3242 9.330063 GATACTGATCAAATGATTAGAACACCA 57.670 33.333 18.67 0.90 39.64 4.17
2909 3263 7.448469 ACACCACATTAGATAAGAGCAAAAACT 59.552 33.333 0.00 0.00 0.00 2.66
2927 3281 6.481954 AAAACTTGGTAAGAGCATAAGACG 57.518 37.500 0.00 0.00 0.00 4.18
2930 3284 1.828595 TGGTAAGAGCATAAGACGCCA 59.171 47.619 0.00 0.00 0.00 5.69
2970 3324 0.526954 CGTAGCCGTCATGGTGGTAC 60.527 60.000 6.10 7.40 41.21 3.34
2973 3327 2.263227 CCGTCATGGTGGTACGCA 59.737 61.111 0.00 0.00 43.02 5.24
2976 3330 1.076533 CGTCATGGTGGTACGCAGTC 61.077 60.000 0.00 0.00 43.93 3.51
2979 3333 0.389296 CATGGTGGTACGCAGTCGAA 60.389 55.000 0.00 0.00 43.93 3.71
2980 3334 0.319083 ATGGTGGTACGCAGTCGAAA 59.681 50.000 0.00 0.00 43.93 3.46
2981 3335 0.104487 TGGTGGTACGCAGTCGAAAA 59.896 50.000 0.00 0.00 43.93 2.29
2982 3336 1.219646 GGTGGTACGCAGTCGAAAAA 58.780 50.000 0.00 0.00 43.93 1.94
2983 3337 1.193874 GGTGGTACGCAGTCGAAAAAG 59.806 52.381 0.00 0.00 43.93 2.27
2984 3338 1.862827 GTGGTACGCAGTCGAAAAAGT 59.137 47.619 0.00 0.00 43.93 2.66
2985 3339 2.286025 GTGGTACGCAGTCGAAAAAGTT 59.714 45.455 0.00 0.00 43.93 2.66
2986 3340 2.937799 TGGTACGCAGTCGAAAAAGTTT 59.062 40.909 0.00 0.00 43.93 2.66
2987 3341 3.374678 TGGTACGCAGTCGAAAAAGTTTT 59.625 39.130 0.00 0.00 43.93 2.43
2988 3342 4.142643 TGGTACGCAGTCGAAAAAGTTTTT 60.143 37.500 13.35 13.35 43.93 1.94
3007 3361 3.420300 TTTTTATGTACCGGTGGAGCA 57.580 42.857 19.93 11.30 0.00 4.26
3008 3362 3.637911 TTTTATGTACCGGTGGAGCAT 57.362 42.857 19.93 17.43 0.00 3.79
3009 3363 2.902705 TTATGTACCGGTGGAGCATC 57.097 50.000 19.93 0.00 0.00 3.91
3029 3383 2.969443 CACCGTTGGAGTGCTTTTAG 57.031 50.000 0.00 0.00 0.00 1.85
3030 3384 1.535462 CACCGTTGGAGTGCTTTTAGG 59.465 52.381 0.00 0.00 0.00 2.69
3031 3385 1.418637 ACCGTTGGAGTGCTTTTAGGA 59.581 47.619 0.00 0.00 0.00 2.94
3032 3386 2.158726 ACCGTTGGAGTGCTTTTAGGAA 60.159 45.455 0.00 0.00 0.00 3.36
3033 3387 3.081804 CCGTTGGAGTGCTTTTAGGAAT 58.918 45.455 0.00 0.00 0.00 3.01
3034 3388 3.506067 CCGTTGGAGTGCTTTTAGGAATT 59.494 43.478 0.00 0.00 0.00 2.17
3035 3389 4.022329 CCGTTGGAGTGCTTTTAGGAATTT 60.022 41.667 0.00 0.00 0.00 1.82
3036 3390 4.917415 CGTTGGAGTGCTTTTAGGAATTTG 59.083 41.667 0.00 0.00 0.00 2.32
3037 3391 5.230182 GTTGGAGTGCTTTTAGGAATTTGG 58.770 41.667 0.00 0.00 0.00 3.28
3038 3392 3.831911 TGGAGTGCTTTTAGGAATTTGGG 59.168 43.478 0.00 0.00 0.00 4.12
3039 3393 3.368427 GGAGTGCTTTTAGGAATTTGGGC 60.368 47.826 0.00 0.00 0.00 5.36
3040 3394 2.567169 AGTGCTTTTAGGAATTTGGGCC 59.433 45.455 0.00 0.00 0.00 5.80
3041 3395 1.905894 TGCTTTTAGGAATTTGGGCCC 59.094 47.619 17.59 17.59 0.00 5.80
3042 3396 2.187958 GCTTTTAGGAATTTGGGCCCT 58.812 47.619 25.70 0.66 0.00 5.19
3043 3397 2.571653 GCTTTTAGGAATTTGGGCCCTT 59.428 45.455 25.70 9.32 0.00 3.95
3044 3398 3.619733 GCTTTTAGGAATTTGGGCCCTTG 60.620 47.826 25.70 0.00 0.00 3.61
3045 3399 3.268034 TTTAGGAATTTGGGCCCTTGT 57.732 42.857 25.70 5.30 0.00 3.16
3046 3400 3.268034 TTAGGAATTTGGGCCCTTGTT 57.732 42.857 25.70 14.55 0.00 2.83
3047 3401 2.116869 AGGAATTTGGGCCCTTGTTT 57.883 45.000 25.70 11.45 0.00 2.83
3048 3402 2.417652 AGGAATTTGGGCCCTTGTTTT 58.582 42.857 25.70 9.52 0.00 2.43
3049 3403 2.106338 AGGAATTTGGGCCCTTGTTTTG 59.894 45.455 25.70 0.00 0.00 2.44
3050 3404 2.158682 GGAATTTGGGCCCTTGTTTTGT 60.159 45.455 25.70 0.00 0.00 2.83
3051 3405 2.636647 ATTTGGGCCCTTGTTTTGTG 57.363 45.000 25.70 0.00 0.00 3.33
3052 3406 1.280457 TTTGGGCCCTTGTTTTGTGT 58.720 45.000 25.70 0.00 0.00 3.72
3053 3407 2.160721 TTGGGCCCTTGTTTTGTGTA 57.839 45.000 25.70 0.00 0.00 2.90
3054 3408 1.404843 TGGGCCCTTGTTTTGTGTAC 58.595 50.000 25.70 0.00 0.00 2.90
3055 3409 1.063567 TGGGCCCTTGTTTTGTGTACT 60.064 47.619 25.70 0.00 0.00 2.73
3056 3410 1.611977 GGGCCCTTGTTTTGTGTACTC 59.388 52.381 17.04 0.00 0.00 2.59
3057 3411 1.611977 GGCCCTTGTTTTGTGTACTCC 59.388 52.381 0.00 0.00 0.00 3.85
3058 3412 1.611977 GCCCTTGTTTTGTGTACTCCC 59.388 52.381 0.00 0.00 0.00 4.30
3059 3413 2.751816 GCCCTTGTTTTGTGTACTCCCT 60.752 50.000 0.00 0.00 0.00 4.20
3060 3414 3.146847 CCCTTGTTTTGTGTACTCCCTC 58.853 50.000 0.00 0.00 0.00 4.30
3061 3415 3.146847 CCTTGTTTTGTGTACTCCCTCC 58.853 50.000 0.00 0.00 0.00 4.30
3062 3416 2.536761 TGTTTTGTGTACTCCCTCCG 57.463 50.000 0.00 0.00 0.00 4.63
3063 3417 1.764134 TGTTTTGTGTACTCCCTCCGT 59.236 47.619 0.00 0.00 0.00 4.69
3064 3418 2.171027 TGTTTTGTGTACTCCCTCCGTT 59.829 45.455 0.00 0.00 0.00 4.44
3065 3419 3.208594 GTTTTGTGTACTCCCTCCGTTT 58.791 45.455 0.00 0.00 0.00 3.60
3066 3420 3.564053 TTTGTGTACTCCCTCCGTTTT 57.436 42.857 0.00 0.00 0.00 2.43
3067 3421 3.564053 TTGTGTACTCCCTCCGTTTTT 57.436 42.857 0.00 0.00 0.00 1.94
3068 3422 4.686191 TTGTGTACTCCCTCCGTTTTTA 57.314 40.909 0.00 0.00 0.00 1.52
3069 3423 4.895668 TGTGTACTCCCTCCGTTTTTAT 57.104 40.909 0.00 0.00 0.00 1.40
3070 3424 5.231702 TGTGTACTCCCTCCGTTTTTATT 57.768 39.130 0.00 0.00 0.00 1.40
3071 3425 5.623169 TGTGTACTCCCTCCGTTTTTATTT 58.377 37.500 0.00 0.00 0.00 1.40
3072 3426 6.767456 TGTGTACTCCCTCCGTTTTTATTTA 58.233 36.000 0.00 0.00 0.00 1.40
3073 3427 6.875195 TGTGTACTCCCTCCGTTTTTATTTAG 59.125 38.462 0.00 0.00 0.00 1.85
3074 3428 6.875726 GTGTACTCCCTCCGTTTTTATTTAGT 59.124 38.462 0.00 0.00 0.00 2.24
3075 3429 7.063898 GTGTACTCCCTCCGTTTTTATTTAGTC 59.936 40.741 0.00 0.00 0.00 2.59
3076 3430 5.494724 ACTCCCTCCGTTTTTATTTAGTCC 58.505 41.667 0.00 0.00 0.00 3.85
3077 3431 4.506758 TCCCTCCGTTTTTATTTAGTCCG 58.493 43.478 0.00 0.00 0.00 4.79
3078 3432 3.064408 CCCTCCGTTTTTATTTAGTCCGC 59.936 47.826 0.00 0.00 0.00 5.54
3079 3433 3.685756 CCTCCGTTTTTATTTAGTCCGCA 59.314 43.478 0.00 0.00 0.00 5.69
3080 3434 4.334481 CCTCCGTTTTTATTTAGTCCGCAT 59.666 41.667 0.00 0.00 0.00 4.73
3081 3435 5.524646 CCTCCGTTTTTATTTAGTCCGCATA 59.475 40.000 0.00 0.00 0.00 3.14
3082 3436 6.204108 CCTCCGTTTTTATTTAGTCCGCATAT 59.796 38.462 0.00 0.00 0.00 1.78
3083 3437 7.255001 CCTCCGTTTTTATTTAGTCCGCATATT 60.255 37.037 0.00 0.00 0.00 1.28
3084 3438 8.659925 TCCGTTTTTATTTAGTCCGCATATTA 57.340 30.769 0.00 0.00 0.00 0.98
3085 3439 8.767085 TCCGTTTTTATTTAGTCCGCATATTAG 58.233 33.333 0.00 0.00 0.00 1.73
3086 3440 7.532884 CCGTTTTTATTTAGTCCGCATATTAGC 59.467 37.037 0.00 0.00 0.00 3.09
3098 3452 4.616181 GCATATTAGCGTTGGTCAAAGT 57.384 40.909 0.00 0.00 0.00 2.66
3099 3453 4.588278 GCATATTAGCGTTGGTCAAAGTC 58.412 43.478 0.00 0.00 0.00 3.01
3100 3454 4.094294 GCATATTAGCGTTGGTCAAAGTCA 59.906 41.667 0.00 0.00 0.00 3.41
3101 3455 5.391523 GCATATTAGCGTTGGTCAAAGTCAA 60.392 40.000 0.00 0.00 0.00 3.18
3102 3456 4.749245 ATTAGCGTTGGTCAAAGTCAAG 57.251 40.909 0.00 0.00 0.00 3.02
3103 3457 0.663153 AGCGTTGGTCAAAGTCAAGC 59.337 50.000 0.00 0.00 0.00 4.01
3104 3458 0.663153 GCGTTGGTCAAAGTCAAGCT 59.337 50.000 0.00 0.00 0.00 3.74
3105 3459 1.065551 GCGTTGGTCAAAGTCAAGCTT 59.934 47.619 0.00 0.00 39.52 3.74
3118 3472 7.812309 AAAGTCAAGCTTTGTAAACTTTGAC 57.188 32.000 14.76 14.88 45.00 3.18
3119 3473 6.509418 AGTCAAGCTTTGTAAACTTTGACA 57.491 33.333 20.02 0.00 30.59 3.58
3120 3474 6.919721 AGTCAAGCTTTGTAAACTTTGACAA 58.080 32.000 20.02 0.88 33.81 3.18
3121 3475 7.375053 AGTCAAGCTTTGTAAACTTTGACAAA 58.625 30.769 20.02 0.00 41.90 2.83
3211 3565 9.836864 TGTACTTTCACATCATATAGATTTGCT 57.163 29.630 0.00 0.00 34.99 3.91
3216 3570 9.797642 TTTCACATCATATAGATTTGCTATGGT 57.202 29.630 0.00 0.00 40.05 3.55
3289 3643 6.920569 ACTTTAGTCAAACCTAATATGCGG 57.079 37.500 0.00 0.00 0.00 5.69
3290 3644 6.646267 ACTTTAGTCAAACCTAATATGCGGA 58.354 36.000 0.00 0.00 0.00 5.54
3291 3645 6.761714 ACTTTAGTCAAACCTAATATGCGGAG 59.238 38.462 0.00 0.00 0.00 4.63
3292 3646 4.755266 AGTCAAACCTAATATGCGGAGT 57.245 40.909 0.00 0.00 0.00 3.85
3293 3647 5.864418 AGTCAAACCTAATATGCGGAGTA 57.136 39.130 0.00 0.00 0.00 2.59
3294 3648 6.229936 AGTCAAACCTAATATGCGGAGTAA 57.770 37.500 0.00 0.00 0.00 2.24
3295 3649 6.646267 AGTCAAACCTAATATGCGGAGTAAA 58.354 36.000 0.00 0.00 0.00 2.01
3296 3650 7.280356 AGTCAAACCTAATATGCGGAGTAAAT 58.720 34.615 0.00 0.00 0.00 1.40
3297 3651 8.426489 AGTCAAACCTAATATGCGGAGTAAATA 58.574 33.333 0.00 0.00 0.00 1.40
3298 3652 9.048446 GTCAAACCTAATATGCGGAGTAAATAA 57.952 33.333 0.00 0.00 0.00 1.40
3299 3653 9.616156 TCAAACCTAATATGCGGAGTAAATAAA 57.384 29.630 0.00 0.00 0.00 1.40
3303 3657 9.623000 ACCTAATATGCGGAGTAAATAAAAACT 57.377 29.630 0.00 0.00 0.00 2.66
3304 3658 9.878599 CCTAATATGCGGAGTAAATAAAAACTG 57.121 33.333 0.00 0.00 0.00 3.16
3307 3661 5.873179 TGCGGAGTAAATAAAAACTGAGG 57.127 39.130 0.00 0.00 0.00 3.86
3308 3662 4.698304 TGCGGAGTAAATAAAAACTGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
3309 3663 4.939439 GCGGAGTAAATAAAAACTGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
3310 3664 5.064834 GCGGAGTAAATAAAAACTGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
3311 3665 6.171213 CGGAGTAAATAAAAACTGAGGGAGT 58.829 40.000 0.00 0.00 35.94 3.85
3312 3666 7.325694 CGGAGTAAATAAAAACTGAGGGAGTA 58.674 38.462 0.00 0.00 33.09 2.59
3313 3667 7.985752 CGGAGTAAATAAAAACTGAGGGAGTAT 59.014 37.037 0.00 0.00 33.09 2.12
3321 3675 9.716556 ATAAAAACTGAGGGAGTATAAGAGAGA 57.283 33.333 0.00 0.00 33.09 3.10
3322 3676 8.616799 AAAAACTGAGGGAGTATAAGAGAGAT 57.383 34.615 0.00 0.00 33.09 2.75
3323 3677 7.595819 AAACTGAGGGAGTATAAGAGAGATG 57.404 40.000 0.00 0.00 33.09 2.90
3324 3678 6.523035 ACTGAGGGAGTATAAGAGAGATGA 57.477 41.667 0.00 0.00 30.86 2.92
3325 3679 6.916909 ACTGAGGGAGTATAAGAGAGATGAA 58.083 40.000 0.00 0.00 30.86 2.57
3326 3680 7.534852 ACTGAGGGAGTATAAGAGAGATGAAT 58.465 38.462 0.00 0.00 30.86 2.57
3327 3681 8.010105 ACTGAGGGAGTATAAGAGAGATGAATT 58.990 37.037 0.00 0.00 30.86 2.17
3328 3682 8.187913 TGAGGGAGTATAAGAGAGATGAATTG 57.812 38.462 0.00 0.00 0.00 2.32
3329 3683 8.007153 TGAGGGAGTATAAGAGAGATGAATTGA 58.993 37.037 0.00 0.00 0.00 2.57
3330 3684 8.789767 AGGGAGTATAAGAGAGATGAATTGAA 57.210 34.615 0.00 0.00 0.00 2.69
3331 3685 9.218525 AGGGAGTATAAGAGAGATGAATTGAAA 57.781 33.333 0.00 0.00 0.00 2.69
3346 3700 8.891671 ATGAATTGAAATACATAAATGTGGGC 57.108 30.769 5.85 0.00 41.89 5.36
3347 3701 7.271511 TGAATTGAAATACATAAATGTGGGCC 58.728 34.615 5.85 0.00 41.89 5.80
3348 3702 7.125507 TGAATTGAAATACATAAATGTGGGCCT 59.874 33.333 4.53 0.00 41.89 5.19
3349 3703 6.865834 TTGAAATACATAAATGTGGGCCTT 57.134 33.333 4.53 0.00 41.89 4.35
3350 3704 6.463995 TGAAATACATAAATGTGGGCCTTC 57.536 37.500 4.53 0.00 41.89 3.46
3351 3705 6.194235 TGAAATACATAAATGTGGGCCTTCT 58.806 36.000 4.53 0.00 41.89 2.85
3352 3706 6.321181 TGAAATACATAAATGTGGGCCTTCTC 59.679 38.462 4.53 0.00 41.89 2.87
3353 3707 3.018423 ACATAAATGTGGGCCTTCTCC 57.982 47.619 4.53 0.00 40.03 3.71
3354 3708 2.582636 ACATAAATGTGGGCCTTCTCCT 59.417 45.455 4.53 0.00 40.03 3.69
3355 3709 3.011708 ACATAAATGTGGGCCTTCTCCTT 59.988 43.478 4.53 0.00 40.03 3.36
3356 3710 1.928868 AAATGTGGGCCTTCTCCTTG 58.071 50.000 4.53 0.00 0.00 3.61
3357 3711 0.779997 AATGTGGGCCTTCTCCTTGT 59.220 50.000 4.53 0.00 0.00 3.16
3358 3712 0.329596 ATGTGGGCCTTCTCCTTGTC 59.670 55.000 4.53 0.00 0.00 3.18
3359 3713 1.376037 GTGGGCCTTCTCCTTGTCG 60.376 63.158 4.53 0.00 0.00 4.35
3360 3714 2.269241 GGGCCTTCTCCTTGTCGG 59.731 66.667 0.84 0.00 0.00 4.79
3361 3715 2.436824 GGCCTTCTCCTTGTCGGC 60.437 66.667 0.00 0.00 39.98 5.54
3362 3716 2.665603 GCCTTCTCCTTGTCGGCT 59.334 61.111 0.00 0.00 37.76 5.52
3363 3717 1.003233 GCCTTCTCCTTGTCGGCTT 60.003 57.895 0.00 0.00 37.76 4.35
3364 3718 0.606673 GCCTTCTCCTTGTCGGCTTT 60.607 55.000 0.00 0.00 37.76 3.51
3365 3719 1.338769 GCCTTCTCCTTGTCGGCTTTA 60.339 52.381 0.00 0.00 37.76 1.85
3366 3720 2.681097 GCCTTCTCCTTGTCGGCTTTAT 60.681 50.000 0.00 0.00 37.76 1.40
3367 3721 3.431766 GCCTTCTCCTTGTCGGCTTTATA 60.432 47.826 0.00 0.00 37.76 0.98
3368 3722 4.743955 GCCTTCTCCTTGTCGGCTTTATAT 60.744 45.833 0.00 0.00 37.76 0.86
3369 3723 4.991687 CCTTCTCCTTGTCGGCTTTATATC 59.008 45.833 0.00 0.00 0.00 1.63
3370 3724 5.453339 CCTTCTCCTTGTCGGCTTTATATCA 60.453 44.000 0.00 0.00 0.00 2.15
3371 3725 5.808366 TCTCCTTGTCGGCTTTATATCAT 57.192 39.130 0.00 0.00 0.00 2.45
3372 3726 5.541845 TCTCCTTGTCGGCTTTATATCATG 58.458 41.667 0.00 0.00 0.00 3.07
3373 3727 5.304357 TCTCCTTGTCGGCTTTATATCATGA 59.696 40.000 0.00 0.00 0.00 3.07
3374 3728 5.541845 TCCTTGTCGGCTTTATATCATGAG 58.458 41.667 0.09 0.00 0.00 2.90
3375 3729 5.304357 TCCTTGTCGGCTTTATATCATGAGA 59.696 40.000 0.09 0.00 0.00 3.27
3376 3730 5.636965 CCTTGTCGGCTTTATATCATGAGAG 59.363 44.000 0.09 0.00 0.00 3.20
3377 3731 6.405278 TTGTCGGCTTTATATCATGAGAGA 57.595 37.500 0.09 0.00 0.00 3.10
3378 3732 6.018589 TGTCGGCTTTATATCATGAGAGAG 57.981 41.667 0.09 0.00 0.00 3.20
3379 3733 5.770162 TGTCGGCTTTATATCATGAGAGAGA 59.230 40.000 0.09 0.00 0.00 3.10
3380 3734 6.265422 TGTCGGCTTTATATCATGAGAGAGAA 59.735 38.462 0.09 0.00 0.00 2.87
3381 3735 7.148641 GTCGGCTTTATATCATGAGAGAGAAA 58.851 38.462 0.09 0.00 0.00 2.52
3382 3736 7.328249 GTCGGCTTTATATCATGAGAGAGAAAG 59.672 40.741 13.70 13.70 43.51 2.62
3383 3737 6.589523 CGGCTTTATATCATGAGAGAGAAAGG 59.410 42.308 17.19 4.37 41.90 3.11
3384 3738 7.524532 CGGCTTTATATCATGAGAGAGAAAGGA 60.525 40.741 17.19 0.00 41.90 3.36
3385 3739 8.320617 GGCTTTATATCATGAGAGAGAAAGGAT 58.679 37.037 17.19 0.00 41.90 3.24
3386 3740 9.723601 GCTTTATATCATGAGAGAGAAAGGATT 57.276 33.333 17.19 0.00 41.90 3.01
3390 3744 8.724113 ATATCATGAGAGAGAAAGGATTGAGA 57.276 34.615 0.09 0.00 0.00 3.27
3391 3745 6.468333 TCATGAGAGAGAAAGGATTGAGAG 57.532 41.667 0.00 0.00 0.00 3.20
3392 3746 6.193504 TCATGAGAGAGAAAGGATTGAGAGA 58.806 40.000 0.00 0.00 0.00 3.10
3393 3747 6.666980 TCATGAGAGAGAAAGGATTGAGAGAA 59.333 38.462 0.00 0.00 0.00 2.87
3394 3748 6.528537 TGAGAGAGAAAGGATTGAGAGAAG 57.471 41.667 0.00 0.00 0.00 2.85
3395 3749 6.252233 TGAGAGAGAAAGGATTGAGAGAAGA 58.748 40.000 0.00 0.00 0.00 2.87
3396 3750 6.152661 TGAGAGAGAAAGGATTGAGAGAAGAC 59.847 42.308 0.00 0.00 0.00 3.01
3397 3751 6.256053 AGAGAGAAAGGATTGAGAGAAGACT 58.744 40.000 0.00 0.00 0.00 3.24
3398 3752 6.153340 AGAGAGAAAGGATTGAGAGAAGACTG 59.847 42.308 0.00 0.00 0.00 3.51
3399 3753 5.779771 AGAGAAAGGATTGAGAGAAGACTGT 59.220 40.000 0.00 0.00 0.00 3.55
3400 3754 6.036577 AGAAAGGATTGAGAGAAGACTGTC 57.963 41.667 0.00 0.00 37.02 3.51
3401 3755 5.779771 AGAAAGGATTGAGAGAAGACTGTCT 59.220 40.000 4.06 4.06 37.33 3.41
3402 3756 5.404466 AAGGATTGAGAGAAGACTGTCTG 57.596 43.478 11.71 0.00 37.33 3.51
3403 3757 3.195396 AGGATTGAGAGAAGACTGTCTGC 59.805 47.826 11.71 9.69 37.33 4.26
3404 3758 3.056250 GGATTGAGAGAAGACTGTCTGCA 60.056 47.826 17.86 6.12 37.33 4.41
3405 3759 4.382901 GGATTGAGAGAAGACTGTCTGCAT 60.383 45.833 17.86 5.93 37.33 3.96
3406 3760 3.589495 TGAGAGAAGACTGTCTGCATG 57.411 47.619 17.86 0.00 37.33 4.06
3407 3761 2.270047 GAGAGAAGACTGTCTGCATGC 58.730 52.381 17.86 11.82 34.23 4.06
3408 3762 1.622312 AGAGAAGACTGTCTGCATGCA 59.378 47.619 21.29 21.29 0.00 3.96
3409 3763 2.236644 AGAGAAGACTGTCTGCATGCAT 59.763 45.455 22.97 5.46 0.00 3.96
3410 3764 3.450096 AGAGAAGACTGTCTGCATGCATA 59.550 43.478 22.97 11.96 0.00 3.14
3411 3765 4.101274 AGAGAAGACTGTCTGCATGCATAT 59.899 41.667 22.97 0.00 0.00 1.78
3412 3766 4.127907 AGAAGACTGTCTGCATGCATATG 58.872 43.478 22.97 10.20 37.36 1.78
3426 3780 5.723295 CATGCATATGCTAAAATAACCCCC 58.277 41.667 27.13 0.00 42.66 5.40
3447 3801 7.675161 CCCCCTCAAAATACTTCCATTTAAT 57.325 36.000 0.00 0.00 0.00 1.40
3448 3802 8.089625 CCCCCTCAAAATACTTCCATTTAATT 57.910 34.615 0.00 0.00 0.00 1.40
3449 3803 8.548025 CCCCCTCAAAATACTTCCATTTAATTT 58.452 33.333 0.00 0.00 0.00 1.82
3450 3804 9.599866 CCCCTCAAAATACTTCCATTTAATTTC 57.400 33.333 0.00 0.00 0.00 2.17
3472 3826 9.826574 ATTTCATTGTGGAAATTTGGATGATAG 57.173 29.630 0.00 0.00 43.13 2.08
3473 3827 8.592529 TTCATTGTGGAAATTTGGATGATAGA 57.407 30.769 0.00 0.00 0.00 1.98
3474 3828 8.771521 TCATTGTGGAAATTTGGATGATAGAT 57.228 30.769 0.00 0.00 0.00 1.98
3475 3829 9.865152 TCATTGTGGAAATTTGGATGATAGATA 57.135 29.630 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 8.744568 TTCACCATTGCATATACTTTGACATA 57.255 30.769 0.00 0.00 0.00 2.29
58 59 8.084073 CCACCAAACATATATCATTGGATTCAC 58.916 37.037 23.60 0.00 44.01 3.18
173 174 4.038042 TCCACGAGGCATATACTCTCTTTG 59.962 45.833 0.00 0.00 32.83 2.77
174 175 4.215908 TCCACGAGGCATATACTCTCTTT 58.784 43.478 0.00 0.00 32.83 2.52
175 176 3.833732 TCCACGAGGCATATACTCTCTT 58.166 45.455 0.00 0.00 32.83 2.85
178 179 3.259374 CCATTCCACGAGGCATATACTCT 59.741 47.826 0.00 0.00 32.83 3.24
196 197 1.880027 GCAGTTTGAGTTCGACCCATT 59.120 47.619 0.00 0.00 0.00 3.16
253 256 4.567537 CCCAAGTCACATGGTGGAGAAATA 60.568 45.833 0.00 0.00 36.14 1.40
327 361 4.378774 TCTCTCGAGTAGTCCGGATTTAG 58.621 47.826 7.81 0.00 0.00 1.85
365 400 4.974438 TCCCCCTCCACAGCCGTT 62.974 66.667 0.00 0.00 0.00 4.44
388 423 7.878547 TGCAAGACATGACCAATCAATATAA 57.121 32.000 0.00 0.00 38.69 0.98
446 482 6.998074 TGCCACTCCTTTACTGGATAATTATG 59.002 38.462 1.78 0.00 35.30 1.90
484 523 9.839185 ATGTACTTGGGATGTATTAGTACCTAT 57.161 33.333 0.00 0.00 40.09 2.57
579 622 2.560119 CCCCGCGAGAGAGATCCAG 61.560 68.421 8.23 0.00 0.00 3.86
587 630 1.889530 AAAAGGAGACCCCGCGAGAG 61.890 60.000 8.23 0.00 40.87 3.20
607 650 2.865079 TGGTATGAGAACCCGCAAAAA 58.135 42.857 0.00 0.00 38.90 1.94
608 651 2.570415 TGGTATGAGAACCCGCAAAA 57.430 45.000 0.00 0.00 38.90 2.44
609 652 2.290641 ACATGGTATGAGAACCCGCAAA 60.291 45.455 0.00 0.00 38.90 3.68
610 653 1.280710 ACATGGTATGAGAACCCGCAA 59.719 47.619 0.00 0.00 38.90 4.85
611 654 0.908910 ACATGGTATGAGAACCCGCA 59.091 50.000 0.00 0.00 38.90 5.69
612 655 1.583054 GACATGGTATGAGAACCCGC 58.417 55.000 0.00 0.00 38.90 6.13
613 656 1.407618 TCGACATGGTATGAGAACCCG 59.592 52.381 0.00 0.00 38.90 5.28
614 657 2.483188 GGTCGACATGGTATGAGAACCC 60.483 54.545 18.91 0.00 38.90 4.11
615 658 2.483188 GGGTCGACATGGTATGAGAACC 60.483 54.545 18.91 0.08 39.53 3.62
616 659 2.167693 TGGGTCGACATGGTATGAGAAC 59.832 50.000 18.91 0.00 0.00 3.01
617 660 2.462723 TGGGTCGACATGGTATGAGAA 58.537 47.619 18.91 0.00 0.00 2.87
667 710 5.245531 ACACATGACATCAAACCGATAGTT 58.754 37.500 0.00 0.00 41.81 2.24
730 780 2.693591 TCCCACTCGACCAATATCTCAC 59.306 50.000 0.00 0.00 0.00 3.51
740 790 2.500229 TGAAAACAATCCCACTCGACC 58.500 47.619 0.00 0.00 0.00 4.79
790 1036 8.944212 AGTACGCAACTTGTTTGTATAATTTC 57.056 30.769 0.00 0.00 37.54 2.17
874 1141 9.660180 TTGCGCCAAATAATATACTGTATGATA 57.340 29.630 4.18 4.13 0.00 2.15
876 1143 7.359681 CGTTGCGCCAAATAATATACTGTATGA 60.360 37.037 4.18 0.00 0.00 2.15
895 1204 0.165727 TCATCATGTTCACGTTGCGC 59.834 50.000 0.00 0.00 0.00 6.09
897 1206 1.197492 TGCTCATCATGTTCACGTTGC 59.803 47.619 0.00 0.00 0.00 4.17
1039 1348 1.120530 ACAGATACCCGGTGGACATC 58.879 55.000 0.00 0.00 34.81 3.06
1237 1549 3.579626 GACGCTGCACAAGTTCGGC 62.580 63.158 0.00 0.00 0.00 5.54
1419 1734 1.004560 CAGCTCAAGTTCGCCCTCA 60.005 57.895 0.00 0.00 0.00 3.86
1558 1873 1.301087 CTACCGGTGCGTGTTCCAA 60.301 57.895 19.93 0.00 0.00 3.53
2428 2746 1.131504 GAGCTGGCTATACGATCGAGG 59.868 57.143 24.34 9.32 0.00 4.63
2457 2775 5.808540 CCAAAAATATCCATGCTTCACACTG 59.191 40.000 0.00 0.00 0.00 3.66
2463 2781 3.798337 CGCACCAAAAATATCCATGCTTC 59.202 43.478 0.00 0.00 0.00 3.86
2599 2917 2.025037 ACTGAGCCAATTGATGCCCTTA 60.025 45.455 7.12 0.00 0.00 2.69
2605 2923 2.230508 AGCAACACTGAGCCAATTGATG 59.769 45.455 7.12 0.00 0.00 3.07
2637 2956 1.797537 GCCGCGCATCAACAACTTC 60.798 57.895 8.75 0.00 0.00 3.01
2714 3066 2.543037 AAAGGGTTTGTGTGGACCTT 57.457 45.000 0.00 0.00 43.01 3.50
2715 3067 2.543037 AAAAGGGTTTGTGTGGACCT 57.457 45.000 0.00 0.00 36.18 3.85
2718 3070 5.892119 TGTGTATTAAAAGGGTTTGTGTGGA 59.108 36.000 0.00 0.00 0.00 4.02
2720 3072 6.183360 ACCTGTGTATTAAAAGGGTTTGTGTG 60.183 38.462 0.00 0.00 33.87 3.82
2734 3086 3.431626 CCTTCGCATGGACCTGTGTATTA 60.432 47.826 0.00 0.00 0.00 0.98
2736 3088 1.134401 CCTTCGCATGGACCTGTGTAT 60.134 52.381 0.00 0.00 0.00 2.29
2737 3089 0.249120 CCTTCGCATGGACCTGTGTA 59.751 55.000 0.00 0.00 0.00 2.90
2748 3100 1.006832 GTTACATGTCGCCTTCGCAT 58.993 50.000 0.00 0.00 34.50 4.73
2749 3101 1.017177 GGTTACATGTCGCCTTCGCA 61.017 55.000 0.00 0.00 35.26 5.10
2860 3214 8.778358 GTGTTCTAATCATTTGATCAGTATCCC 58.222 37.037 0.00 0.00 32.75 3.85
2866 3220 7.381766 TGTGGTGTTCTAATCATTTGATCAG 57.618 36.000 0.00 0.00 32.75 2.90
2888 3242 8.409358 ACCAAGTTTTTGCTCTTATCTAATGT 57.591 30.769 0.00 0.00 32.79 2.71
2909 3263 2.235155 TGGCGTCTTATGCTCTTACCAA 59.765 45.455 0.00 0.00 0.00 3.67
2940 3294 1.215647 CGGCTACGTCTTTGCCTCT 59.784 57.895 16.06 0.00 44.09 3.69
2941 3295 3.782042 CGGCTACGTCTTTGCCTC 58.218 61.111 16.06 0.00 44.09 4.70
2958 3312 1.076533 CGACTGCGTACCACCATGAC 61.077 60.000 0.00 0.00 0.00 3.06
2987 3341 3.420300 TGCTCCACCGGTACATAAAAA 57.580 42.857 6.87 0.00 0.00 1.94
2988 3342 3.537580 GATGCTCCACCGGTACATAAAA 58.462 45.455 6.87 0.00 0.00 1.52
2989 3343 2.158871 GGATGCTCCACCGGTACATAAA 60.159 50.000 6.87 0.00 36.28 1.40
2990 3344 1.414919 GGATGCTCCACCGGTACATAA 59.585 52.381 6.87 0.00 36.28 1.90
2991 3345 1.045407 GGATGCTCCACCGGTACATA 58.955 55.000 6.87 0.00 36.28 2.29
2992 3346 0.980754 TGGATGCTCCACCGGTACAT 60.981 55.000 6.87 9.16 42.67 2.29
2993 3347 1.610967 TGGATGCTCCACCGGTACA 60.611 57.895 6.87 3.68 42.67 2.90
2994 3348 3.305314 TGGATGCTCCACCGGTAC 58.695 61.111 6.87 0.00 42.67 3.34
3010 3364 1.535462 CCTAAAAGCACTCCAACGGTG 59.465 52.381 0.00 0.00 37.70 4.94
3011 3365 1.418637 TCCTAAAAGCACTCCAACGGT 59.581 47.619 0.00 0.00 0.00 4.83
3012 3366 2.178912 TCCTAAAAGCACTCCAACGG 57.821 50.000 0.00 0.00 0.00 4.44
3013 3367 4.766404 AATTCCTAAAAGCACTCCAACG 57.234 40.909 0.00 0.00 0.00 4.10
3014 3368 5.230182 CCAAATTCCTAAAAGCACTCCAAC 58.770 41.667 0.00 0.00 0.00 3.77
3015 3369 4.283212 CCCAAATTCCTAAAAGCACTCCAA 59.717 41.667 0.00 0.00 0.00 3.53
3016 3370 3.831911 CCCAAATTCCTAAAAGCACTCCA 59.168 43.478 0.00 0.00 0.00 3.86
3017 3371 3.368427 GCCCAAATTCCTAAAAGCACTCC 60.368 47.826 0.00 0.00 0.00 3.85
3018 3372 3.368427 GGCCCAAATTCCTAAAAGCACTC 60.368 47.826 0.00 0.00 0.00 3.51
3019 3373 2.567169 GGCCCAAATTCCTAAAAGCACT 59.433 45.455 0.00 0.00 0.00 4.40
3020 3374 2.354704 GGGCCCAAATTCCTAAAAGCAC 60.355 50.000 19.95 0.00 0.00 4.40
3021 3375 1.905894 GGGCCCAAATTCCTAAAAGCA 59.094 47.619 19.95 0.00 0.00 3.91
3022 3376 2.187958 AGGGCCCAAATTCCTAAAAGC 58.812 47.619 27.56 0.00 0.00 3.51
3023 3377 3.582647 ACAAGGGCCCAAATTCCTAAAAG 59.417 43.478 27.56 0.00 0.00 2.27
3024 3378 3.592865 ACAAGGGCCCAAATTCCTAAAA 58.407 40.909 27.56 0.00 0.00 1.52
3025 3379 3.268034 ACAAGGGCCCAAATTCCTAAA 57.732 42.857 27.56 0.00 0.00 1.85
3026 3380 3.268034 AACAAGGGCCCAAATTCCTAA 57.732 42.857 27.56 0.00 0.00 2.69
3027 3381 3.268034 AAACAAGGGCCCAAATTCCTA 57.732 42.857 27.56 0.00 0.00 2.94
3028 3382 2.106338 CAAAACAAGGGCCCAAATTCCT 59.894 45.455 27.56 0.00 0.00 3.36
3029 3383 2.158682 ACAAAACAAGGGCCCAAATTCC 60.159 45.455 27.56 0.00 0.00 3.01
3030 3384 2.877786 CACAAAACAAGGGCCCAAATTC 59.122 45.455 27.56 0.00 0.00 2.17
3031 3385 2.240921 ACACAAAACAAGGGCCCAAATT 59.759 40.909 27.56 11.92 0.00 1.82
3032 3386 1.843206 ACACAAAACAAGGGCCCAAAT 59.157 42.857 27.56 6.76 0.00 2.32
3033 3387 1.280457 ACACAAAACAAGGGCCCAAA 58.720 45.000 27.56 0.00 0.00 3.28
3034 3388 1.757699 GTACACAAAACAAGGGCCCAA 59.242 47.619 27.56 0.00 0.00 4.12
3035 3389 1.063567 AGTACACAAAACAAGGGCCCA 60.064 47.619 27.56 0.00 0.00 5.36
3036 3390 1.611977 GAGTACACAAAACAAGGGCCC 59.388 52.381 16.46 16.46 0.00 5.80
3037 3391 1.611977 GGAGTACACAAAACAAGGGCC 59.388 52.381 0.00 0.00 0.00 5.80
3038 3392 1.611977 GGGAGTACACAAAACAAGGGC 59.388 52.381 0.00 0.00 0.00 5.19
3039 3393 3.146847 GAGGGAGTACACAAAACAAGGG 58.853 50.000 0.00 0.00 0.00 3.95
3040 3394 3.146847 GGAGGGAGTACACAAAACAAGG 58.853 50.000 0.00 0.00 0.00 3.61
3041 3395 2.806244 CGGAGGGAGTACACAAAACAAG 59.194 50.000 0.00 0.00 0.00 3.16
3042 3396 2.171027 ACGGAGGGAGTACACAAAACAA 59.829 45.455 0.00 0.00 0.00 2.83
3043 3397 1.764134 ACGGAGGGAGTACACAAAACA 59.236 47.619 0.00 0.00 0.00 2.83
3044 3398 2.538512 ACGGAGGGAGTACACAAAAC 57.461 50.000 0.00 0.00 0.00 2.43
3045 3399 3.564053 AAACGGAGGGAGTACACAAAA 57.436 42.857 0.00 0.00 0.00 2.44
3046 3400 3.564053 AAAACGGAGGGAGTACACAAA 57.436 42.857 0.00 0.00 0.00 2.83
3047 3401 3.564053 AAAAACGGAGGGAGTACACAA 57.436 42.857 0.00 0.00 0.00 3.33
3048 3402 4.895668 ATAAAAACGGAGGGAGTACACA 57.104 40.909 0.00 0.00 0.00 3.72
3049 3403 6.875726 ACTAAATAAAAACGGAGGGAGTACAC 59.124 38.462 0.00 0.00 0.00 2.90
3050 3404 7.008021 ACTAAATAAAAACGGAGGGAGTACA 57.992 36.000 0.00 0.00 0.00 2.90
3051 3405 6.536582 GGACTAAATAAAAACGGAGGGAGTAC 59.463 42.308 0.00 0.00 0.00 2.73
3052 3406 6.627953 CGGACTAAATAAAAACGGAGGGAGTA 60.628 42.308 0.00 0.00 0.00 2.59
3053 3407 5.494724 GGACTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
3054 3408 4.569564 CGGACTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
3055 3409 4.506758 CGGACTAAATAAAAACGGAGGGA 58.493 43.478 0.00 0.00 0.00 4.20
3056 3410 3.064408 GCGGACTAAATAAAAACGGAGGG 59.936 47.826 0.00 0.00 0.00 4.30
3057 3411 3.685756 TGCGGACTAAATAAAAACGGAGG 59.314 43.478 0.00 0.00 0.00 4.30
3058 3412 4.932268 TGCGGACTAAATAAAAACGGAG 57.068 40.909 0.00 0.00 0.00 4.63
3059 3413 7.556733 AATATGCGGACTAAATAAAAACGGA 57.443 32.000 0.00 0.00 0.00 4.69
3060 3414 7.532884 GCTAATATGCGGACTAAATAAAAACGG 59.467 37.037 0.00 0.00 0.00 4.44
3061 3415 8.418267 GCTAATATGCGGACTAAATAAAAACG 57.582 34.615 0.00 0.00 0.00 3.60
3077 3431 4.094294 TGACTTTGACCAACGCTAATATGC 59.906 41.667 0.00 0.00 0.00 3.14
3078 3432 5.794687 TGACTTTGACCAACGCTAATATG 57.205 39.130 0.00 0.00 0.00 1.78
3079 3433 5.163754 GCTTGACTTTGACCAACGCTAATAT 60.164 40.000 0.00 0.00 0.00 1.28
3080 3434 4.153475 GCTTGACTTTGACCAACGCTAATA 59.847 41.667 0.00 0.00 0.00 0.98
3081 3435 3.058224 GCTTGACTTTGACCAACGCTAAT 60.058 43.478 0.00 0.00 0.00 1.73
3082 3436 2.289547 GCTTGACTTTGACCAACGCTAA 59.710 45.455 0.00 0.00 0.00 3.09
3083 3437 1.871039 GCTTGACTTTGACCAACGCTA 59.129 47.619 0.00 0.00 0.00 4.26
3084 3438 0.663153 GCTTGACTTTGACCAACGCT 59.337 50.000 0.00 0.00 0.00 5.07
3085 3439 0.663153 AGCTTGACTTTGACCAACGC 59.337 50.000 0.00 0.00 0.00 4.84
3086 3440 3.420839 AAAGCTTGACTTTGACCAACG 57.579 42.857 0.00 0.00 47.00 4.10
3095 3449 6.919721 TGTCAAAGTTTACAAAGCTTGACTT 58.080 32.000 19.48 3.36 39.29 3.01
3096 3450 6.509418 TGTCAAAGTTTACAAAGCTTGACT 57.491 33.333 19.48 0.00 39.29 3.41
3097 3451 7.575332 TTTGTCAAAGTTTACAAAGCTTGAC 57.425 32.000 0.00 15.49 39.88 3.18
3185 3539 9.836864 AGCAAATCTATATGATGTGAAAGTACA 57.163 29.630 0.00 0.00 41.79 2.90
3190 3544 9.797642 ACCATAGCAAATCTATATGATGTGAAA 57.202 29.630 8.62 0.00 41.79 2.69
3265 3619 6.759827 TCCGCATATTAGGTTTGACTAAAGTC 59.240 38.462 3.08 3.08 44.97 3.01
3266 3620 6.646267 TCCGCATATTAGGTTTGACTAAAGT 58.354 36.000 0.00 0.00 36.60 2.66
3267 3621 6.761714 ACTCCGCATATTAGGTTTGACTAAAG 59.238 38.462 0.00 0.00 36.60 1.85
3268 3622 6.646267 ACTCCGCATATTAGGTTTGACTAAA 58.354 36.000 0.00 0.00 36.60 1.85
3269 3623 6.229936 ACTCCGCATATTAGGTTTGACTAA 57.770 37.500 0.00 0.00 37.35 2.24
3270 3624 5.864418 ACTCCGCATATTAGGTTTGACTA 57.136 39.130 0.00 0.00 0.00 2.59
3271 3625 4.755266 ACTCCGCATATTAGGTTTGACT 57.245 40.909 0.00 0.00 0.00 3.41
3272 3626 6.913873 TTTACTCCGCATATTAGGTTTGAC 57.086 37.500 0.00 0.00 0.00 3.18
3273 3627 9.616156 TTTATTTACTCCGCATATTAGGTTTGA 57.384 29.630 0.00 0.00 0.00 2.69
3277 3631 9.623000 AGTTTTTATTTACTCCGCATATTAGGT 57.377 29.630 0.00 0.00 0.00 3.08
3278 3632 9.878599 CAGTTTTTATTTACTCCGCATATTAGG 57.121 33.333 0.00 0.00 0.00 2.69
3281 3635 8.621286 CCTCAGTTTTTATTTACTCCGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
3282 3636 7.228706 CCCTCAGTTTTTATTTACTCCGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
3283 3637 6.540914 CCCTCAGTTTTTATTTACTCCGCATA 59.459 38.462 0.00 0.00 0.00 3.14
3284 3638 5.357032 CCCTCAGTTTTTATTTACTCCGCAT 59.643 40.000 0.00 0.00 0.00 4.73
3285 3639 4.698304 CCCTCAGTTTTTATTTACTCCGCA 59.302 41.667 0.00 0.00 0.00 5.69
3286 3640 4.939439 TCCCTCAGTTTTTATTTACTCCGC 59.061 41.667 0.00 0.00 0.00 5.54
3287 3641 6.171213 ACTCCCTCAGTTTTTATTTACTCCG 58.829 40.000 0.00 0.00 26.56 4.63
3295 3649 9.716556 TCTCTCTTATACTCCCTCAGTTTTTAT 57.283 33.333 0.00 0.00 36.43 1.40
3296 3650 9.716556 ATCTCTCTTATACTCCCTCAGTTTTTA 57.283 33.333 0.00 0.00 36.43 1.52
3297 3651 8.482128 CATCTCTCTTATACTCCCTCAGTTTTT 58.518 37.037 0.00 0.00 36.43 1.94
3298 3652 7.841729 TCATCTCTCTTATACTCCCTCAGTTTT 59.158 37.037 0.00 0.00 36.43 2.43
3299 3653 7.358263 TCATCTCTCTTATACTCCCTCAGTTT 58.642 38.462 0.00 0.00 36.43 2.66
3300 3654 6.916909 TCATCTCTCTTATACTCCCTCAGTT 58.083 40.000 0.00 0.00 36.43 3.16
3301 3655 6.523035 TCATCTCTCTTATACTCCCTCAGT 57.477 41.667 0.00 0.00 39.41 3.41
3302 3656 8.306038 CAATTCATCTCTCTTATACTCCCTCAG 58.694 40.741 0.00 0.00 0.00 3.35
3303 3657 8.007153 TCAATTCATCTCTCTTATACTCCCTCA 58.993 37.037 0.00 0.00 0.00 3.86
3304 3658 8.415950 TCAATTCATCTCTCTTATACTCCCTC 57.584 38.462 0.00 0.00 0.00 4.30
3305 3659 8.789767 TTCAATTCATCTCTCTTATACTCCCT 57.210 34.615 0.00 0.00 0.00 4.20
3320 3674 8.981647 GCCCACATTTATGTATTTCAATTCATC 58.018 33.333 0.00 0.00 39.39 2.92
3321 3675 7.933033 GGCCCACATTTATGTATTTCAATTCAT 59.067 33.333 0.00 0.00 39.39 2.57
3322 3676 7.125507 AGGCCCACATTTATGTATTTCAATTCA 59.874 33.333 0.00 0.00 39.39 2.57
3323 3677 7.500141 AGGCCCACATTTATGTATTTCAATTC 58.500 34.615 0.00 0.00 39.39 2.17
3324 3678 7.436320 AGGCCCACATTTATGTATTTCAATT 57.564 32.000 0.00 0.00 39.39 2.32
3325 3679 7.345392 AGAAGGCCCACATTTATGTATTTCAAT 59.655 33.333 0.00 0.00 39.39 2.57
3326 3680 6.667414 AGAAGGCCCACATTTATGTATTTCAA 59.333 34.615 0.00 0.00 39.39 2.69
3327 3681 6.194235 AGAAGGCCCACATTTATGTATTTCA 58.806 36.000 0.00 0.00 39.39 2.69
3328 3682 6.239036 GGAGAAGGCCCACATTTATGTATTTC 60.239 42.308 0.00 0.00 39.39 2.17
3329 3683 5.598417 GGAGAAGGCCCACATTTATGTATTT 59.402 40.000 0.00 0.00 39.39 1.40
3330 3684 5.103515 AGGAGAAGGCCCACATTTATGTATT 60.104 40.000 0.00 0.00 39.39 1.89
3331 3685 4.416848 AGGAGAAGGCCCACATTTATGTAT 59.583 41.667 0.00 0.00 39.39 2.29
3332 3686 3.785887 AGGAGAAGGCCCACATTTATGTA 59.214 43.478 0.00 0.00 39.39 2.29
3333 3687 2.582636 AGGAGAAGGCCCACATTTATGT 59.417 45.455 0.00 0.00 42.84 2.29
3334 3688 3.303351 AGGAGAAGGCCCACATTTATG 57.697 47.619 0.00 0.00 0.00 1.90
3335 3689 3.011708 ACAAGGAGAAGGCCCACATTTAT 59.988 43.478 0.00 0.00 0.00 1.40
3336 3690 2.378547 ACAAGGAGAAGGCCCACATTTA 59.621 45.455 0.00 0.00 0.00 1.40
3337 3691 1.147817 ACAAGGAGAAGGCCCACATTT 59.852 47.619 0.00 0.00 0.00 2.32
3338 3692 0.779997 ACAAGGAGAAGGCCCACATT 59.220 50.000 0.00 0.00 0.00 2.71
3339 3693 0.329596 GACAAGGAGAAGGCCCACAT 59.670 55.000 0.00 0.00 0.00 3.21
3340 3694 1.761174 GACAAGGAGAAGGCCCACA 59.239 57.895 0.00 0.00 0.00 4.17
3341 3695 1.376037 CGACAAGGAGAAGGCCCAC 60.376 63.158 0.00 0.00 0.00 4.61
3342 3696 2.592993 CCGACAAGGAGAAGGCCCA 61.593 63.158 0.00 0.00 45.00 5.36
3343 3697 2.269241 CCGACAAGGAGAAGGCCC 59.731 66.667 0.00 0.00 45.00 5.80
3344 3698 2.436824 GCCGACAAGGAGAAGGCC 60.437 66.667 0.00 0.00 45.00 5.19
3346 3700 2.762535 TAAAGCCGACAAGGAGAAGG 57.237 50.000 0.00 0.00 45.00 3.46
3347 3701 5.601662 TGATATAAAGCCGACAAGGAGAAG 58.398 41.667 0.00 0.00 45.00 2.85
3348 3702 5.607939 TGATATAAAGCCGACAAGGAGAA 57.392 39.130 0.00 0.00 45.00 2.87
3349 3703 5.304357 TCATGATATAAAGCCGACAAGGAGA 59.696 40.000 0.00 0.00 45.00 3.71
3350 3704 5.541845 TCATGATATAAAGCCGACAAGGAG 58.458 41.667 0.00 0.00 45.00 3.69
3351 3705 5.304357 TCTCATGATATAAAGCCGACAAGGA 59.696 40.000 0.00 0.00 45.00 3.36
3352 3706 5.541845 TCTCATGATATAAAGCCGACAAGG 58.458 41.667 0.00 0.00 44.97 3.61
3353 3707 6.450545 TCTCTCATGATATAAAGCCGACAAG 58.549 40.000 0.00 0.00 0.00 3.16
3354 3708 6.265422 TCTCTCTCATGATATAAAGCCGACAA 59.735 38.462 0.00 0.00 0.00 3.18
3355 3709 5.770162 TCTCTCTCATGATATAAAGCCGACA 59.230 40.000 0.00 0.00 0.00 4.35
3356 3710 6.260870 TCTCTCTCATGATATAAAGCCGAC 57.739 41.667 0.00 0.00 0.00 4.79
3357 3711 6.901081 TTCTCTCTCATGATATAAAGCCGA 57.099 37.500 0.00 0.00 0.00 5.54
3358 3712 6.589523 CCTTTCTCTCTCATGATATAAAGCCG 59.410 42.308 0.00 0.00 0.00 5.52
3359 3713 7.675062 TCCTTTCTCTCTCATGATATAAAGCC 58.325 38.462 0.00 0.00 0.00 4.35
3360 3714 9.723601 AATCCTTTCTCTCTCATGATATAAAGC 57.276 33.333 0.00 0.00 0.00 3.51
3364 3718 9.819754 TCTCAATCCTTTCTCTCTCATGATATA 57.180 33.333 0.00 0.00 0.00 0.86
3365 3719 8.724113 TCTCAATCCTTTCTCTCTCATGATAT 57.276 34.615 0.00 0.00 0.00 1.63
3366 3720 8.003629 TCTCTCAATCCTTTCTCTCTCATGATA 58.996 37.037 0.00 0.00 0.00 2.15
3367 3721 6.840181 TCTCTCAATCCTTTCTCTCTCATGAT 59.160 38.462 0.00 0.00 0.00 2.45
3368 3722 6.193504 TCTCTCAATCCTTTCTCTCTCATGA 58.806 40.000 0.00 0.00 0.00 3.07
3369 3723 6.468333 TCTCTCAATCCTTTCTCTCTCATG 57.532 41.667 0.00 0.00 0.00 3.07
3370 3724 6.896860 TCTTCTCTCAATCCTTTCTCTCTCAT 59.103 38.462 0.00 0.00 0.00 2.90
3371 3725 6.152661 GTCTTCTCTCAATCCTTTCTCTCTCA 59.847 42.308 0.00 0.00 0.00 3.27
3372 3726 6.378280 AGTCTTCTCTCAATCCTTTCTCTCTC 59.622 42.308 0.00 0.00 0.00 3.20
3373 3727 6.153340 CAGTCTTCTCTCAATCCTTTCTCTCT 59.847 42.308 0.00 0.00 0.00 3.10
3374 3728 6.071391 ACAGTCTTCTCTCAATCCTTTCTCTC 60.071 42.308 0.00 0.00 0.00 3.20
3375 3729 5.779771 ACAGTCTTCTCTCAATCCTTTCTCT 59.220 40.000 0.00 0.00 0.00 3.10
3376 3730 6.036577 ACAGTCTTCTCTCAATCCTTTCTC 57.963 41.667 0.00 0.00 0.00 2.87
3377 3731 5.779771 AGACAGTCTTCTCTCAATCCTTTCT 59.220 40.000 0.00 0.00 0.00 2.52
3378 3732 5.868801 CAGACAGTCTTCTCTCAATCCTTTC 59.131 44.000 0.00 0.00 0.00 2.62
3379 3733 5.792741 CAGACAGTCTTCTCTCAATCCTTT 58.207 41.667 0.00 0.00 0.00 3.11
3380 3734 4.322650 GCAGACAGTCTTCTCTCAATCCTT 60.323 45.833 0.00 0.00 0.00 3.36
3381 3735 3.195396 GCAGACAGTCTTCTCTCAATCCT 59.805 47.826 0.00 0.00 0.00 3.24
3382 3736 3.056250 TGCAGACAGTCTTCTCTCAATCC 60.056 47.826 0.00 0.00 0.00 3.01
3383 3737 4.185467 TGCAGACAGTCTTCTCTCAATC 57.815 45.455 0.00 0.00 0.00 2.67
3384 3738 4.505808 CATGCAGACAGTCTTCTCTCAAT 58.494 43.478 0.00 0.00 0.00 2.57
3385 3739 3.863780 GCATGCAGACAGTCTTCTCTCAA 60.864 47.826 14.21 0.00 0.00 3.02
3386 3740 2.353505 GCATGCAGACAGTCTTCTCTCA 60.354 50.000 14.21 0.00 0.00 3.27
3387 3741 2.270047 GCATGCAGACAGTCTTCTCTC 58.730 52.381 14.21 0.00 0.00 3.20
3388 3742 1.622312 TGCATGCAGACAGTCTTCTCT 59.378 47.619 18.46 0.00 0.00 3.10
3389 3743 2.090400 TGCATGCAGACAGTCTTCTC 57.910 50.000 18.46 0.00 0.00 2.87
3390 3744 2.783609 ATGCATGCAGACAGTCTTCT 57.216 45.000 26.69 1.43 0.00 2.85
3391 3745 4.469625 CATATGCATGCAGACAGTCTTC 57.530 45.455 26.69 0.00 0.00 2.87
3403 3757 5.723295 GGGGGTTATTTTAGCATATGCATG 58.277 41.667 28.62 0.00 45.16 4.06
3423 3777 7.675161 ATTAAATGGAAGTATTTTGAGGGGG 57.325 36.000 0.00 0.00 32.79 5.40
3424 3778 9.599866 GAAATTAAATGGAAGTATTTTGAGGGG 57.400 33.333 0.00 0.00 32.79 4.79
3446 3800 9.826574 CTATCATCCAAATTTCCACAATGAAAT 57.173 29.630 0.00 0.00 44.67 2.17
3447 3801 9.033711 TCTATCATCCAAATTTCCACAATGAAA 57.966 29.630 0.00 0.00 38.51 2.69
3448 3802 8.592529 TCTATCATCCAAATTTCCACAATGAA 57.407 30.769 0.00 0.00 0.00 2.57
3449 3803 8.771521 ATCTATCATCCAAATTTCCACAATGA 57.228 30.769 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.