Multiple sequence alignment - TraesCS4A01G031200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G031200 chr4A 100.000 1640 0 0 1 1640 24227419 24229058 0.000000e+00 3029.0
1 TraesCS4A01G031200 chr4A 100.000 1250 0 0 1873 3122 24229291 24230540 0.000000e+00 2309.0
2 TraesCS4A01G031200 chr4A 82.490 257 21 6 1873 2111 24228800 24229050 1.470000e-48 204.0
3 TraesCS4A01G031200 chr4A 82.490 257 21 6 1382 1632 24229291 24229529 1.470000e-48 204.0
4 TraesCS4A01G031200 chr4A 81.166 223 41 1 2831 3053 292123012 292123233 8.900000e-41 178.0
5 TraesCS4A01G031200 chr4D 89.701 1573 76 21 1 1531 443510535 443509007 0.000000e+00 1929.0
6 TraesCS4A01G031200 chr4D 89.613 1059 64 10 1938 2972 443508569 443507533 0.000000e+00 1304.0
7 TraesCS4A01G031200 chr4D 87.081 209 21 1 1424 1632 443508604 443508402 6.730000e-57 231.0
8 TraesCS4A01G031200 chr4D 90.476 105 8 1 2023 2125 443508676 443508572 1.510000e-28 137.0
9 TraesCS4A01G031200 chr4D 79.412 136 22 1 1873 2008 443509144 443509015 1.190000e-14 91.6
10 TraesCS4A01G031200 chr4D 88.312 77 3 3 1897 1967 443509144 443509068 1.540000e-13 87.9
11 TraesCS4A01G031200 chr4B 88.730 1402 80 28 1 1354 552830015 552828644 0.000000e+00 1642.0
12 TraesCS4A01G031200 chr4B 86.185 1093 105 23 1919 2980 552827978 552826901 0.000000e+00 1140.0
13 TraesCS4A01G031200 chr4B 89.286 196 9 6 1336 1531 552828692 552828509 5.210000e-58 235.0
14 TraesCS4A01G031200 chr4B 87.970 133 10 2 1990 2116 552828093 552827961 5.390000e-33 152.0
15 TraesCS4A01G031200 chr4B 90.265 113 10 1 1361 1473 552828498 552828387 2.510000e-31 147.0
16 TraesCS4A01G031200 chr4B 88.421 95 5 1 1873 1967 552828478 552828390 3.290000e-20 110.0
17 TraesCS4A01G031200 chr4B 94.872 39 2 0 1897 1935 552828478 552828440 9.350000e-06 62.1
18 TraesCS4A01G031200 chr1A 83.550 231 36 2 2825 3054 359942994 359942765 6.780000e-52 215.0
19 TraesCS4A01G031200 chr1A 80.804 224 42 1 2831 3054 313443588 313443810 1.150000e-39 174.0
20 TraesCS4A01G031200 chr1A 82.857 140 23 1 2613 2751 382101890 382102029 1.180000e-24 124.0
21 TraesCS4A01G031200 chr2B 80.833 240 43 3 2816 3054 40943036 40943273 5.320000e-43 185.0
22 TraesCS4A01G031200 chr2B 82.143 140 24 1 2613 2751 541634901 541635040 5.470000e-23 119.0
23 TraesCS4A01G031200 chr5A 81.221 213 39 1 2831 3043 475865230 475865441 1.490000e-38 171.0
24 TraesCS4A01G031200 chr3B 80.374 214 41 1 2830 3043 228672804 228673016 8.960000e-36 161.0
25 TraesCS4A01G031200 chr7A 79.464 224 45 1 2831 3054 700128727 700128505 1.160000e-34 158.0
26 TraesCS4A01G031200 chr5D 84.286 140 21 1 2613 2751 345681957 345682096 5.430000e-28 135.0
27 TraesCS4A01G031200 chr5D 82.857 140 23 1 2613 2751 47010620 47010759 1.180000e-24 124.0
28 TraesCS4A01G031200 chr6D 82.857 140 23 1 2613 2751 208548791 208548652 1.180000e-24 124.0
29 TraesCS4A01G031200 chr6D 82.143 140 24 1 2613 2751 143474771 143474910 5.470000e-23 119.0
30 TraesCS4A01G031200 chr1D 82.857 140 23 1 2613 2751 327014878 327015017 1.180000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G031200 chr4A 24227419 24230540 3121 False 1436.500000 3029 91.245000 1 3122 4 chr4A.!!$F2 3121
1 TraesCS4A01G031200 chr4D 443507533 443510535 3002 True 630.083333 1929 87.432500 1 2972 6 chr4D.!!$R1 2971
2 TraesCS4A01G031200 chr4B 552826901 552830015 3114 True 498.300000 1642 89.389857 1 2980 7 chr4B.!!$R1 2979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 463 0.035534 AGCATACATTGTGGGTGCGA 60.036 50.0 14.02 0.00 37.09 5.10 F
1549 1611 0.036765 TGAATGGAGGCGCTAACGTT 60.037 50.0 7.64 5.88 42.83 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1571 1633 0.035056 AGACCAGCATTGCCACCTAC 60.035 55.0 4.7 0.0 0.0 3.18 R
2848 3415 0.032017 AGAGAGCGGGGATTAGGTGT 60.032 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 0.792640 AGTACTACGTCACCGTCACG 59.207 55.000 0.00 0.00 46.28 4.35
281 286 3.053842 TACTACTGAGTACTGACCCCCAG 60.054 52.174 0.00 2.49 41.72 4.45
306 311 7.443879 AGAAGCTACCTAGTTACGGTTATCTAC 59.556 40.741 0.00 0.00 35.98 2.59
310 315 6.456795 ACCTAGTTACGGTTATCTACAACC 57.543 41.667 0.00 0.00 43.88 3.77
339 344 2.592308 GGCTTCCGGGCTTCAGAT 59.408 61.111 0.00 0.00 37.53 2.90
351 363 1.485895 GCTTCAGATCAGGGCTTCTCT 59.514 52.381 0.00 0.00 0.00 3.10
352 364 2.093021 GCTTCAGATCAGGGCTTCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
353 365 3.133721 GCTTCAGATCAGGGCTTCTCTTA 59.866 47.826 0.00 0.00 0.00 2.10
360 372 1.065854 CAGGGCTTCTCTTAGTGTGGG 60.066 57.143 0.00 0.00 0.00 4.61
367 379 2.846193 TCTCTTAGTGTGGGTTTGTGC 58.154 47.619 0.00 0.00 0.00 4.57
370 382 3.561143 TCTTAGTGTGGGTTTGTGCAAT 58.439 40.909 0.00 0.00 0.00 3.56
447 463 0.035534 AGCATACATTGTGGGTGCGA 60.036 50.000 14.02 0.00 37.09 5.10
455 471 2.500509 TTGTGGGTGCGACAAATTTC 57.499 45.000 0.00 0.00 29.80 2.17
457 473 1.751351 TGTGGGTGCGACAAATTTCAA 59.249 42.857 0.00 0.00 0.00 2.69
466 482 5.342259 GTGCGACAAATTTCAAAGTGATACC 59.658 40.000 0.00 0.00 0.00 2.73
468 484 5.918011 GCGACAAATTTCAAAGTGATACCAA 59.082 36.000 0.00 0.00 0.00 3.67
469 485 6.088085 GCGACAAATTTCAAAGTGATACCAAG 59.912 38.462 0.00 0.00 0.00 3.61
470 486 6.088085 CGACAAATTTCAAAGTGATACCAAGC 59.912 38.462 0.00 0.00 0.00 4.01
471 487 6.815089 ACAAATTTCAAAGTGATACCAAGCA 58.185 32.000 0.00 0.00 0.00 3.91
475 491 2.813754 TCAAAGTGATACCAAGCAGCAC 59.186 45.455 0.00 0.00 0.00 4.40
487 503 3.676216 CAGCACATGCAGGCTCAA 58.324 55.556 6.64 0.00 45.16 3.02
488 504 1.211969 CAGCACATGCAGGCTCAAC 59.788 57.895 6.64 0.00 45.16 3.18
513 531 6.862608 CGTTTGATGATTCATTTCACCTTCAA 59.137 34.615 0.00 0.00 0.00 2.69
518 536 6.564709 TGATTCATTTCACCTTCAACTCTG 57.435 37.500 0.00 0.00 0.00 3.35
519 537 5.474532 TGATTCATTTCACCTTCAACTCTGG 59.525 40.000 0.00 0.00 0.00 3.86
532 550 4.389374 TCAACTCTGGGAACATTTGAGAC 58.611 43.478 0.00 0.00 41.51 3.36
538 563 1.468914 GGGAACATTTGAGACGCCTTC 59.531 52.381 0.00 0.00 0.00 3.46
572 597 2.401766 CGATGCTGGGCAGTGGAAC 61.402 63.158 0.00 0.00 43.65 3.62
754 799 5.290493 TGAAATCCGTTCCAGCTATATGT 57.710 39.130 0.00 0.00 35.12 2.29
758 803 1.419374 CGTTCCAGCTATATGTCGGC 58.581 55.000 0.00 0.00 0.00 5.54
822 867 2.438434 GTGCCCTCGGGACCAATG 60.438 66.667 6.08 0.00 38.12 2.82
909 954 4.103311 AGACAGCCAAATATAGGAGGGAAC 59.897 45.833 0.00 0.00 0.00 3.62
932 977 9.477484 GAACATCGTTCTATATAAATGTGTCCT 57.523 33.333 0.00 0.00 0.00 3.85
1047 1093 2.135933 GTTCTCCTGGTGTTTCTCGTG 58.864 52.381 0.00 0.00 0.00 4.35
1050 1096 1.068588 CTCCTGGTGTTTCTCGTGTCA 59.931 52.381 0.00 0.00 0.00 3.58
1203 1258 8.092068 CCACATATATAACATGACGGGTCTTTA 58.908 37.037 0.00 0.00 0.00 1.85
1247 1302 1.066929 TCACACTCATGCATGCGTAGT 60.067 47.619 21.17 16.53 0.00 2.73
1284 1345 8.296000 TGTATATGTTGTTCCTGATGTTTGTTG 58.704 33.333 0.00 0.00 0.00 3.33
1310 1372 4.974368 TTTCATATTAGGGCAAACGGTG 57.026 40.909 0.00 0.00 0.00 4.94
1311 1373 2.925724 TCATATTAGGGCAAACGGTGG 58.074 47.619 0.00 0.00 0.00 4.61
1312 1374 2.240160 TCATATTAGGGCAAACGGTGGT 59.760 45.455 0.00 0.00 0.00 4.16
1313 1375 2.116827 TATTAGGGCAAACGGTGGTG 57.883 50.000 0.00 0.00 0.00 4.17
1314 1376 1.248101 ATTAGGGCAAACGGTGGTGC 61.248 55.000 8.20 8.20 40.14 5.01
1315 1377 2.346284 TTAGGGCAAACGGTGGTGCT 62.346 55.000 14.48 1.87 40.70 4.40
1316 1378 1.481901 TAGGGCAAACGGTGGTGCTA 61.482 55.000 14.48 1.08 40.70 3.49
1317 1379 1.899534 GGGCAAACGGTGGTGCTAA 60.900 57.895 14.48 0.00 40.70 3.09
1318 1380 1.248101 GGGCAAACGGTGGTGCTAAT 61.248 55.000 14.48 0.00 40.70 1.73
1319 1381 0.109319 GGCAAACGGTGGTGCTAATG 60.109 55.000 14.48 0.00 40.70 1.90
1320 1382 0.596082 GCAAACGGTGGTGCTAATGT 59.404 50.000 9.21 0.00 37.78 2.71
1321 1383 1.000717 GCAAACGGTGGTGCTAATGTT 60.001 47.619 9.21 0.00 37.78 2.71
1322 1384 2.660490 CAAACGGTGGTGCTAATGTTG 58.340 47.619 0.00 0.00 0.00 3.33
1323 1385 1.243902 AACGGTGGTGCTAATGTTGG 58.756 50.000 0.00 0.00 0.00 3.77
1324 1386 0.608035 ACGGTGGTGCTAATGTTGGG 60.608 55.000 0.00 0.00 0.00 4.12
1325 1387 1.890174 GGTGGTGCTAATGTTGGGC 59.110 57.895 0.00 0.00 0.00 5.36
1326 1388 0.611896 GGTGGTGCTAATGTTGGGCT 60.612 55.000 0.00 0.00 0.00 5.19
1327 1389 1.256812 GTGGTGCTAATGTTGGGCTT 58.743 50.000 0.00 0.00 0.00 4.35
1328 1390 1.067635 GTGGTGCTAATGTTGGGCTTG 60.068 52.381 0.00 0.00 0.00 4.01
1329 1391 1.202989 TGGTGCTAATGTTGGGCTTGA 60.203 47.619 0.00 0.00 0.00 3.02
1330 1392 1.892474 GGTGCTAATGTTGGGCTTGAA 59.108 47.619 0.00 0.00 0.00 2.69
1331 1393 2.298729 GGTGCTAATGTTGGGCTTGAAA 59.701 45.455 0.00 0.00 0.00 2.69
1332 1394 3.244044 GGTGCTAATGTTGGGCTTGAAAA 60.244 43.478 0.00 0.00 0.00 2.29
1409 1471 3.197790 CGAATGGAGGCGCTGGTG 61.198 66.667 7.64 0.00 0.00 4.17
1410 1472 3.512516 GAATGGAGGCGCTGGTGC 61.513 66.667 7.64 0.00 0.00 5.01
1420 1482 3.512516 GCTGGTGCGAATGGAGGC 61.513 66.667 0.00 0.00 0.00 4.70
1428 1490 2.045926 GAATGGAGGCGCTGGTGT 60.046 61.111 7.64 0.00 0.00 4.16
1516 1578 4.748409 GCAAATGCAAACGGTGGT 57.252 50.000 0.00 0.00 41.59 4.16
1517 1579 2.224428 GCAAATGCAAACGGTGGTG 58.776 52.632 0.00 0.00 41.59 4.17
1518 1580 1.830368 GCAAATGCAAACGGTGGTGC 61.830 55.000 9.48 9.48 41.59 5.01
1519 1581 1.068921 AAATGCAAACGGTGGTGCC 59.931 52.632 12.84 0.00 40.14 5.01
1532 1594 4.927782 GTGCCGGTGCTGGTGTGA 62.928 66.667 1.90 0.00 38.71 3.58
1533 1595 4.182433 TGCCGGTGCTGGTGTGAA 62.182 61.111 1.90 0.00 38.71 3.18
1534 1596 2.672996 GCCGGTGCTGGTGTGAAT 60.673 61.111 1.90 0.00 33.53 2.57
1535 1597 2.981560 GCCGGTGCTGGTGTGAATG 61.982 63.158 1.90 0.00 33.53 2.67
1536 1598 2.334946 CCGGTGCTGGTGTGAATGG 61.335 63.158 0.00 0.00 0.00 3.16
1537 1599 1.302431 CGGTGCTGGTGTGAATGGA 60.302 57.895 0.00 0.00 0.00 3.41
1538 1600 1.300971 CGGTGCTGGTGTGAATGGAG 61.301 60.000 0.00 0.00 0.00 3.86
1539 1601 0.962356 GGTGCTGGTGTGAATGGAGG 60.962 60.000 0.00 0.00 0.00 4.30
1540 1602 1.303561 TGCTGGTGTGAATGGAGGC 60.304 57.895 0.00 0.00 0.00 4.70
1541 1603 2.401766 GCTGGTGTGAATGGAGGCG 61.402 63.158 0.00 0.00 0.00 5.52
1542 1604 2.359850 TGGTGTGAATGGAGGCGC 60.360 61.111 0.00 0.00 0.00 6.53
1543 1605 2.045926 GGTGTGAATGGAGGCGCT 60.046 61.111 7.64 0.00 0.00 5.92
1544 1606 1.220749 GGTGTGAATGGAGGCGCTA 59.779 57.895 7.64 0.00 0.00 4.26
1545 1607 0.392461 GGTGTGAATGGAGGCGCTAA 60.392 55.000 7.64 0.00 0.00 3.09
1546 1608 0.727398 GTGTGAATGGAGGCGCTAAC 59.273 55.000 7.64 0.00 0.00 2.34
1547 1609 0.739462 TGTGAATGGAGGCGCTAACG 60.739 55.000 7.64 0.00 44.07 3.18
1548 1610 0.739813 GTGAATGGAGGCGCTAACGT 60.740 55.000 7.64 0.00 42.83 3.99
1549 1611 0.036765 TGAATGGAGGCGCTAACGTT 60.037 50.000 7.64 5.88 42.83 3.99
1550 1612 0.373716 GAATGGAGGCGCTAACGTTG 59.626 55.000 11.99 2.07 42.83 4.10
1551 1613 1.024579 AATGGAGGCGCTAACGTTGG 61.025 55.000 11.99 9.60 42.83 3.77
1552 1614 1.895020 ATGGAGGCGCTAACGTTGGA 61.895 55.000 16.60 0.00 42.83 3.53
1553 1615 1.810030 GGAGGCGCTAACGTTGGAG 60.810 63.158 16.60 13.64 42.83 3.86
1554 1616 2.434359 AGGCGCTAACGTTGGAGC 60.434 61.111 27.57 27.57 42.83 4.70
1555 1617 2.434359 GGCGCTAACGTTGGAGCT 60.434 61.111 31.96 0.10 42.83 4.09
1556 1618 2.740714 GGCGCTAACGTTGGAGCTG 61.741 63.158 31.96 19.85 42.83 4.24
1557 1619 2.740714 GCGCTAACGTTGGAGCTGG 61.741 63.158 28.03 12.03 42.83 4.85
1558 1620 1.374252 CGCTAACGTTGGAGCTGGT 60.374 57.895 16.60 0.00 36.50 4.00
1559 1621 1.352156 CGCTAACGTTGGAGCTGGTC 61.352 60.000 16.60 0.00 36.50 4.02
1560 1622 0.037232 GCTAACGTTGGAGCTGGTCT 60.037 55.000 16.60 0.00 35.73 3.85
1561 1623 1.608283 GCTAACGTTGGAGCTGGTCTT 60.608 52.381 16.60 0.00 35.73 3.01
1562 1624 2.069273 CTAACGTTGGAGCTGGTCTTG 58.931 52.381 11.99 0.00 0.00 3.02
1563 1625 0.535102 AACGTTGGAGCTGGTCTTGG 60.535 55.000 0.00 0.00 0.00 3.61
1564 1626 1.371183 CGTTGGAGCTGGTCTTGGA 59.629 57.895 6.83 0.00 0.00 3.53
1565 1627 0.671781 CGTTGGAGCTGGTCTTGGAG 60.672 60.000 6.83 0.00 0.00 3.86
1566 1628 0.957888 GTTGGAGCTGGTCTTGGAGC 60.958 60.000 6.83 0.00 35.28 4.70
1567 1629 1.418097 TTGGAGCTGGTCTTGGAGCA 61.418 55.000 6.83 0.00 37.70 4.26
1568 1630 1.376466 GGAGCTGGTCTTGGAGCAA 59.624 57.895 6.83 0.00 39.59 3.91
1569 1631 0.250901 GGAGCTGGTCTTGGAGCAAA 60.251 55.000 6.83 0.00 39.59 3.68
1570 1632 1.615384 GGAGCTGGTCTTGGAGCAAAT 60.615 52.381 6.83 0.00 39.59 2.32
1571 1633 1.471684 GAGCTGGTCTTGGAGCAAATG 59.528 52.381 0.00 0.00 39.59 2.32
1572 1634 1.202976 AGCTGGTCTTGGAGCAAATGT 60.203 47.619 0.00 0.00 39.59 2.71
1573 1635 2.040278 AGCTGGTCTTGGAGCAAATGTA 59.960 45.455 0.00 0.00 39.59 2.29
1574 1636 2.421424 GCTGGTCTTGGAGCAAATGTAG 59.579 50.000 1.26 0.00 39.59 2.74
1575 1637 3.012518 CTGGTCTTGGAGCAAATGTAGG 58.987 50.000 1.26 0.00 39.59 3.18
1576 1638 2.375174 TGGTCTTGGAGCAAATGTAGGT 59.625 45.455 0.00 0.00 37.11 3.08
1577 1639 2.749621 GGTCTTGGAGCAAATGTAGGTG 59.250 50.000 0.00 0.00 0.00 4.00
1578 1640 2.749621 GTCTTGGAGCAAATGTAGGTGG 59.250 50.000 0.00 0.00 0.00 4.61
1579 1641 1.474077 CTTGGAGCAAATGTAGGTGGC 59.526 52.381 0.00 0.00 0.00 5.01
1580 1642 0.403655 TGGAGCAAATGTAGGTGGCA 59.596 50.000 0.00 0.00 0.00 4.92
1581 1643 1.202989 TGGAGCAAATGTAGGTGGCAA 60.203 47.619 0.00 0.00 0.00 4.52
1598 1660 1.608055 CAATGCTGGTCTTGGTGTCA 58.392 50.000 0.00 0.00 0.00 3.58
1604 1666 0.254462 TGGTCTTGGTGTCAGTGCAA 59.746 50.000 0.00 0.00 0.00 4.08
1608 1670 3.189287 GGTCTTGGTGTCAGTGCAAATAG 59.811 47.826 0.00 0.00 0.00 1.73
1611 1673 5.182001 GTCTTGGTGTCAGTGCAAATAGATT 59.818 40.000 0.00 0.00 0.00 2.40
1622 1684 6.474427 CAGTGCAAATAGATTTATTGGTGCTG 59.526 38.462 11.71 7.56 35.48 4.41
1623 1685 5.750067 GTGCAAATAGATTTATTGGTGCTGG 59.250 40.000 11.71 0.00 35.48 4.85
1627 1689 7.322664 CAAATAGATTTATTGGTGCTGGTGTT 58.677 34.615 0.00 0.00 30.00 3.32
1628 1690 4.789012 AGATTTATTGGTGCTGGTGTTG 57.211 40.909 0.00 0.00 0.00 3.33
1629 1691 3.511146 AGATTTATTGGTGCTGGTGTTGG 59.489 43.478 0.00 0.00 0.00 3.77
1630 1692 2.373335 TTATTGGTGCTGGTGTTGGT 57.627 45.000 0.00 0.00 0.00 3.67
1631 1693 1.614996 TATTGGTGCTGGTGTTGGTG 58.385 50.000 0.00 0.00 0.00 4.17
1632 1694 1.747325 ATTGGTGCTGGTGTTGGTGC 61.747 55.000 0.00 0.00 0.00 5.01
1633 1695 2.832661 GGTGCTGGTGTTGGTGCA 60.833 61.111 0.00 0.00 0.00 4.57
1634 1696 2.422231 GGTGCTGGTGTTGGTGCAA 61.422 57.895 0.00 0.00 37.17 4.08
1635 1697 1.515020 GTGCTGGTGTTGGTGCAAA 59.485 52.632 0.00 0.00 37.17 3.68
1636 1698 0.104671 GTGCTGGTGTTGGTGCAAAT 59.895 50.000 0.00 0.00 37.17 2.32
1637 1699 0.104487 TGCTGGTGTTGGTGCAAATG 59.896 50.000 0.00 0.00 32.12 2.32
1638 1700 0.600782 GCTGGTGTTGGTGCAAATGG 60.601 55.000 0.00 0.00 0.00 3.16
1639 1701 1.039068 CTGGTGTTGGTGCAAATGGA 58.961 50.000 0.00 0.00 0.00 3.41
1901 1963 2.045926 GAATGGAGGCGCTGGTGT 60.046 61.111 7.64 0.00 0.00 4.16
1912 1974 1.081242 GCTGGTGTTGGTGCGAATG 60.081 57.895 0.00 0.00 0.00 2.67
1913 1975 1.580942 CTGGTGTTGGTGCGAATGG 59.419 57.895 0.00 0.00 0.00 3.16
1914 1976 0.888736 CTGGTGTTGGTGCGAATGGA 60.889 55.000 0.00 0.00 0.00 3.41
1915 1977 0.888736 TGGTGTTGGTGCGAATGGAG 60.889 55.000 0.00 0.00 0.00 3.86
1916 1978 1.586154 GGTGTTGGTGCGAATGGAGG 61.586 60.000 0.00 0.00 0.00 4.30
1917 1979 1.971167 TGTTGGTGCGAATGGAGGC 60.971 57.895 0.00 0.00 0.00 4.70
1954 2016 1.745653 GCCTTGGAGCAAATGTAGGTC 59.254 52.381 0.00 0.00 0.00 3.85
1968 2502 0.107703 TAGGTCTTGGAGCCAATGCG 60.108 55.000 1.86 0.00 44.33 4.73
1979 2513 2.568090 CAATGCGGGTCTTGGTGC 59.432 61.111 0.00 0.00 0.00 5.01
2076 2616 1.178534 CCAATGCCGGTCTTGGTGTT 61.179 55.000 22.16 0.00 37.67 3.32
2104 2644 5.416326 GCACATAAAGGTATTGGTGTTGGTA 59.584 40.000 0.00 0.00 0.00 3.25
2105 2645 6.624204 GCACATAAAGGTATTGGTGTTGGTAC 60.624 42.308 0.00 0.00 0.00 3.34
2138 2678 3.923017 ATGAAGGAAGCCGAAAACAAG 57.077 42.857 0.00 0.00 0.00 3.16
2139 2679 1.336755 TGAAGGAAGCCGAAAACAAGC 59.663 47.619 0.00 0.00 0.00 4.01
2154 2694 3.990318 ACAAGCAAGTCAACTAAAGGC 57.010 42.857 0.00 0.00 0.00 4.35
2208 2758 2.220824 CGAAGCAAGTCAATCAACACGA 59.779 45.455 0.00 0.00 0.00 4.35
2384 2948 5.162947 ACATTGGAGGGTGCAAATATCCTAT 60.163 40.000 9.22 5.28 29.75 2.57
2535 3100 2.500369 GCTTGCGACACACATGCG 60.500 61.111 0.00 0.00 0.00 4.73
2548 3113 1.599071 CACATGCGTGATGGTGTATCC 59.401 52.381 14.17 0.00 46.80 2.59
2618 3183 4.036262 CCAAAAGTTCTCCATCGAACACAA 59.964 41.667 6.47 0.00 44.37 3.33
2642 3207 1.129251 CGGCACATCATGTCTCAACAC 59.871 52.381 0.00 0.00 38.48 3.32
2670 3236 6.765989 ACATCACTACAAACAACTACACATGT 59.234 34.615 0.00 0.00 0.00 3.21
2684 3250 7.426606 ACTACACATGTATGTACCCAATGTA 57.573 36.000 0.00 0.00 39.39 2.29
2710 3276 3.054802 AGACTTAGCATGTCTCAAAGGGG 60.055 47.826 0.00 0.00 40.35 4.79
2735 3301 2.557869 ACTATGCTAGGGTGGGAACAA 58.442 47.619 0.00 0.00 46.06 2.83
2751 3317 1.670791 ACAACTACCAAACACACCCG 58.329 50.000 0.00 0.00 0.00 5.28
2778 3344 1.355381 TCACAAGGATGCACCCATCTT 59.645 47.619 0.00 0.00 45.73 2.40
2796 3362 2.888834 TTTGAAAGCAAAGAGGCACC 57.111 45.000 0.00 0.00 38.99 5.01
2797 3363 1.774110 TTGAAAGCAAAGAGGCACCA 58.226 45.000 0.00 0.00 35.83 4.17
2808 3374 3.788227 AGAGGCACCAACACATTTCTA 57.212 42.857 0.00 0.00 0.00 2.10
2809 3375 3.679389 AGAGGCACCAACACATTTCTAG 58.321 45.455 0.00 0.00 0.00 2.43
2810 3376 3.327757 AGAGGCACCAACACATTTCTAGA 59.672 43.478 0.00 0.00 0.00 2.43
2811 3377 4.018960 AGAGGCACCAACACATTTCTAGAT 60.019 41.667 0.00 0.00 0.00 1.98
2847 3414 7.248437 GCATGTACATTAGGAACAGTAAAACC 58.752 38.462 5.37 0.00 0.00 3.27
2848 3415 7.094549 GCATGTACATTAGGAACAGTAAAACCA 60.095 37.037 5.37 0.00 0.00 3.67
2892 3459 5.186256 TGAATTAGGTGTTTCTGGCCATA 57.814 39.130 5.51 0.00 0.00 2.74
2899 3466 5.025453 AGGTGTTTCTGGCCATATGATTTT 58.975 37.500 5.51 0.00 0.00 1.82
2903 3470 5.716228 TGTTTCTGGCCATATGATTTTGTCT 59.284 36.000 5.51 0.00 0.00 3.41
2904 3471 5.840243 TTCTGGCCATATGATTTTGTCTG 57.160 39.130 5.51 0.00 0.00 3.51
2906 3473 4.883585 TCTGGCCATATGATTTTGTCTGTC 59.116 41.667 5.51 0.00 0.00 3.51
2925 3492 2.875933 GTCAAACATTTCTGACCGTCCA 59.124 45.455 0.00 0.00 36.72 4.02
2939 3506 4.020928 TGACCGTCCAATCTAAAGTAAGCA 60.021 41.667 0.00 0.00 0.00 3.91
2975 3542 1.139058 ACTAGGCCTAATGTCGCAAGG 59.861 52.381 14.85 0.12 38.47 3.61
2980 3547 1.718757 CCTAATGTCGCAAGGGCAGC 61.719 60.000 0.00 0.00 41.24 5.25
2981 3548 0.745845 CTAATGTCGCAAGGGCAGCT 60.746 55.000 0.00 0.00 41.24 4.24
2982 3549 0.539518 TAATGTCGCAAGGGCAGCTA 59.460 50.000 0.00 0.00 41.24 3.32
2983 3550 1.026718 AATGTCGCAAGGGCAGCTAC 61.027 55.000 0.00 0.00 41.24 3.58
2984 3551 1.903877 ATGTCGCAAGGGCAGCTACT 61.904 55.000 0.00 0.00 41.24 2.57
2985 3552 1.811679 GTCGCAAGGGCAGCTACTC 60.812 63.158 0.00 0.00 41.24 2.59
2986 3553 2.512515 CGCAAGGGCAGCTACTCC 60.513 66.667 0.00 0.00 41.24 3.85
2987 3554 2.124529 GCAAGGGCAGCTACTCCC 60.125 66.667 9.27 9.27 42.94 4.30
2991 3558 3.130227 GGGCAGCTACTCCCGTAG 58.870 66.667 2.53 0.00 44.77 3.51
3001 3568 4.931661 CTACTCCCGTAGCTATTTTGGA 57.068 45.455 0.00 0.14 36.96 3.53
3002 3569 3.538634 ACTCCCGTAGCTATTTTGGAC 57.461 47.619 0.00 0.00 0.00 4.02
3003 3570 2.169978 ACTCCCGTAGCTATTTTGGACC 59.830 50.000 0.00 0.00 0.00 4.46
3004 3571 2.434702 CTCCCGTAGCTATTTTGGACCT 59.565 50.000 0.00 0.00 0.00 3.85
3005 3572 2.841881 TCCCGTAGCTATTTTGGACCTT 59.158 45.455 0.00 0.00 0.00 3.50
3006 3573 3.264964 TCCCGTAGCTATTTTGGACCTTT 59.735 43.478 0.00 0.00 0.00 3.11
3007 3574 3.377172 CCCGTAGCTATTTTGGACCTTTG 59.623 47.826 0.00 0.00 0.00 2.77
3008 3575 4.007659 CCGTAGCTATTTTGGACCTTTGT 58.992 43.478 0.00 0.00 0.00 2.83
3009 3576 4.142687 CCGTAGCTATTTTGGACCTTTGTG 60.143 45.833 0.00 0.00 0.00 3.33
3010 3577 4.142687 CGTAGCTATTTTGGACCTTTGTGG 60.143 45.833 0.00 0.00 42.93 4.17
3021 3588 2.760634 CCTTTGTGGTTAATTGGGCC 57.239 50.000 0.00 0.00 0.00 5.80
3022 3589 1.974236 CCTTTGTGGTTAATTGGGCCA 59.026 47.619 0.00 0.00 0.00 5.36
3023 3590 2.028203 CCTTTGTGGTTAATTGGGCCAG 60.028 50.000 6.23 0.00 32.31 4.85
3024 3591 2.685106 TTGTGGTTAATTGGGCCAGA 57.315 45.000 6.23 0.00 32.31 3.86
3025 3592 2.917713 TGTGGTTAATTGGGCCAGAT 57.082 45.000 6.23 1.84 32.31 2.90
3026 3593 3.182887 TGTGGTTAATTGGGCCAGATT 57.817 42.857 6.23 12.15 32.31 2.40
3027 3594 3.515562 TGTGGTTAATTGGGCCAGATTT 58.484 40.909 6.23 4.99 32.31 2.17
3028 3595 3.906846 TGTGGTTAATTGGGCCAGATTTT 59.093 39.130 6.23 2.33 32.31 1.82
3029 3596 4.020662 TGTGGTTAATTGGGCCAGATTTTC 60.021 41.667 6.23 6.65 32.31 2.29
3030 3597 3.517500 TGGTTAATTGGGCCAGATTTTCC 59.482 43.478 6.23 14.14 0.00 3.13
3031 3598 3.774766 GGTTAATTGGGCCAGATTTTCCT 59.225 43.478 6.23 0.00 0.00 3.36
3032 3599 4.383010 GGTTAATTGGGCCAGATTTTCCTG 60.383 45.833 6.23 0.00 0.00 3.86
3039 3606 0.897621 CCAGATTTTCCTGGTTGGCC 59.102 55.000 0.00 0.00 46.62 5.36
3040 3607 0.897621 CAGATTTTCCTGGTTGGCCC 59.102 55.000 0.00 0.00 35.26 5.80
3041 3608 0.486879 AGATTTTCCTGGTTGGCCCA 59.513 50.000 0.00 0.00 42.51 5.36
3042 3609 1.132881 AGATTTTCCTGGTTGGCCCAA 60.133 47.619 0.00 0.00 44.65 4.12
3043 3610 1.696884 GATTTTCCTGGTTGGCCCAAA 59.303 47.619 0.00 0.00 44.65 3.28
3044 3611 1.127343 TTTTCCTGGTTGGCCCAAAG 58.873 50.000 0.00 0.00 44.65 2.77
3045 3612 1.406860 TTTCCTGGTTGGCCCAAAGC 61.407 55.000 0.00 0.00 44.65 3.51
3046 3613 2.523902 CCTGGTTGGCCCAAAGCA 60.524 61.111 0.00 3.58 44.65 3.91
3047 3614 2.139484 CCTGGTTGGCCCAAAGCAA 61.139 57.895 0.00 0.00 44.65 3.91
3048 3615 1.069596 CTGGTTGGCCCAAAGCAAC 59.930 57.895 0.00 1.36 44.65 4.17
3049 3616 2.028925 GGTTGGCCCAAAGCAACG 59.971 61.111 0.00 0.00 46.50 4.10
3050 3617 2.494530 GGTTGGCCCAAAGCAACGA 61.495 57.895 0.00 0.00 46.50 3.85
3051 3618 1.439644 GTTGGCCCAAAGCAACGAA 59.560 52.632 0.00 0.00 46.50 3.85
3052 3619 0.597377 GTTGGCCCAAAGCAACGAAG 60.597 55.000 0.00 0.00 46.50 3.79
3053 3620 1.743321 TTGGCCCAAAGCAACGAAGG 61.743 55.000 0.00 0.00 46.50 3.46
3054 3621 1.901464 GGCCCAAAGCAACGAAGGA 60.901 57.895 0.00 0.00 46.50 3.36
3055 3622 1.460273 GGCCCAAAGCAACGAAGGAA 61.460 55.000 0.00 0.00 46.50 3.36
3056 3623 0.603065 GCCCAAAGCAACGAAGGAAT 59.397 50.000 0.00 0.00 42.97 3.01
3057 3624 1.402852 GCCCAAAGCAACGAAGGAATC 60.403 52.381 0.00 0.00 42.97 2.52
3058 3625 2.162681 CCCAAAGCAACGAAGGAATCT 58.837 47.619 0.00 0.00 0.00 2.40
3059 3626 2.162408 CCCAAAGCAACGAAGGAATCTC 59.838 50.000 0.00 0.00 0.00 2.75
3060 3627 2.813754 CCAAAGCAACGAAGGAATCTCA 59.186 45.455 0.00 0.00 0.00 3.27
3061 3628 3.441572 CCAAAGCAACGAAGGAATCTCAT 59.558 43.478 0.00 0.00 0.00 2.90
3062 3629 4.409570 CAAAGCAACGAAGGAATCTCATG 58.590 43.478 0.00 0.00 0.00 3.07
3063 3630 2.012673 AGCAACGAAGGAATCTCATGC 58.987 47.619 0.00 0.00 0.00 4.06
3064 3631 1.739466 GCAACGAAGGAATCTCATGCA 59.261 47.619 0.00 0.00 32.25 3.96
3065 3632 2.162208 GCAACGAAGGAATCTCATGCAA 59.838 45.455 0.00 0.00 32.25 4.08
3066 3633 3.730061 GCAACGAAGGAATCTCATGCAAG 60.730 47.826 0.00 0.00 32.25 4.01
3067 3634 3.340814 ACGAAGGAATCTCATGCAAGT 57.659 42.857 0.00 0.00 0.00 3.16
3068 3635 3.005554 ACGAAGGAATCTCATGCAAGTG 58.994 45.455 0.00 0.00 0.00 3.16
3069 3636 3.005554 CGAAGGAATCTCATGCAAGTGT 58.994 45.455 0.00 0.00 0.00 3.55
3070 3637 3.438087 CGAAGGAATCTCATGCAAGTGTT 59.562 43.478 0.00 0.00 0.00 3.32
3071 3638 4.436584 CGAAGGAATCTCATGCAAGTGTTC 60.437 45.833 0.00 0.00 0.00 3.18
3072 3639 3.350833 AGGAATCTCATGCAAGTGTTCC 58.649 45.455 13.08 13.08 34.87 3.62
3073 3640 2.424956 GGAATCTCATGCAAGTGTTCCC 59.575 50.000 0.00 0.00 31.67 3.97
3074 3641 3.350833 GAATCTCATGCAAGTGTTCCCT 58.649 45.455 0.00 0.00 0.00 4.20
3075 3642 4.517285 GAATCTCATGCAAGTGTTCCCTA 58.483 43.478 0.00 0.00 0.00 3.53
3076 3643 4.574674 ATCTCATGCAAGTGTTCCCTAA 57.425 40.909 0.00 0.00 0.00 2.69
3077 3644 4.365514 TCTCATGCAAGTGTTCCCTAAA 57.634 40.909 0.00 0.00 0.00 1.85
3078 3645 4.326826 TCTCATGCAAGTGTTCCCTAAAG 58.673 43.478 0.00 0.00 0.00 1.85
3079 3646 4.041567 TCTCATGCAAGTGTTCCCTAAAGA 59.958 41.667 0.00 0.00 0.00 2.52
3080 3647 4.724399 TCATGCAAGTGTTCCCTAAAGAA 58.276 39.130 0.00 0.00 0.00 2.52
3081 3648 5.136828 TCATGCAAGTGTTCCCTAAAGAAA 58.863 37.500 0.00 0.00 0.00 2.52
3082 3649 5.774690 TCATGCAAGTGTTCCCTAAAGAAAT 59.225 36.000 0.00 0.00 0.00 2.17
3083 3650 6.945435 TCATGCAAGTGTTCCCTAAAGAAATA 59.055 34.615 0.00 0.00 0.00 1.40
3084 3651 7.450014 TCATGCAAGTGTTCCCTAAAGAAATAA 59.550 33.333 0.00 0.00 0.00 1.40
3085 3652 7.589958 TGCAAGTGTTCCCTAAAGAAATAAA 57.410 32.000 0.00 0.00 0.00 1.40
3086 3653 8.189119 TGCAAGTGTTCCCTAAAGAAATAAAT 57.811 30.769 0.00 0.00 0.00 1.40
3087 3654 8.646900 TGCAAGTGTTCCCTAAAGAAATAAATT 58.353 29.630 0.00 0.00 0.00 1.82
3088 3655 9.140286 GCAAGTGTTCCCTAAAGAAATAAATTC 57.860 33.333 0.00 0.00 38.39 2.17
3089 3656 9.341899 CAAGTGTTCCCTAAAGAAATAAATTCG 57.658 33.333 0.00 0.00 43.15 3.34
3090 3657 8.631480 AGTGTTCCCTAAAGAAATAAATTCGT 57.369 30.769 0.00 0.00 43.15 3.85
3091 3658 9.074576 AGTGTTCCCTAAAGAAATAAATTCGTT 57.925 29.630 0.00 0.00 43.15 3.85
3092 3659 9.124807 GTGTTCCCTAAAGAAATAAATTCGTTG 57.875 33.333 0.65 0.00 43.15 4.10
3093 3660 9.069082 TGTTCCCTAAAGAAATAAATTCGTTGA 57.931 29.630 0.65 0.00 43.15 3.18
3094 3661 9.338291 GTTCCCTAAAGAAATAAATTCGTTGAC 57.662 33.333 0.65 0.00 43.15 3.18
3095 3662 8.624367 TCCCTAAAGAAATAAATTCGTTGACA 57.376 30.769 0.65 0.00 43.15 3.58
3096 3663 8.508875 TCCCTAAAGAAATAAATTCGTTGACAC 58.491 33.333 0.65 0.00 43.15 3.67
3097 3664 8.293867 CCCTAAAGAAATAAATTCGTTGACACA 58.706 33.333 0.65 0.00 43.15 3.72
3098 3665 9.329913 CCTAAAGAAATAAATTCGTTGACACAG 57.670 33.333 0.65 0.00 43.15 3.66
3099 3666 9.329913 CTAAAGAAATAAATTCGTTGACACAGG 57.670 33.333 0.65 0.00 43.15 4.00
3100 3667 7.504924 AAGAAATAAATTCGTTGACACAGGA 57.495 32.000 0.00 0.00 43.15 3.86
3101 3668 7.504924 AGAAATAAATTCGTTGACACAGGAA 57.495 32.000 0.00 0.00 43.15 3.36
3102 3669 7.936584 AGAAATAAATTCGTTGACACAGGAAA 58.063 30.769 0.00 0.00 43.15 3.13
3103 3670 8.076178 AGAAATAAATTCGTTGACACAGGAAAG 58.924 33.333 0.00 0.00 43.15 2.62
3104 3671 7.504924 AATAAATTCGTTGACACAGGAAAGA 57.495 32.000 0.00 0.00 0.00 2.52
3105 3672 5.828299 AAATTCGTTGACACAGGAAAGAA 57.172 34.783 0.00 0.00 0.00 2.52
3106 3673 6.391227 AAATTCGTTGACACAGGAAAGAAT 57.609 33.333 0.00 0.00 33.45 2.40
3107 3674 5.613358 ATTCGTTGACACAGGAAAGAATC 57.387 39.130 0.00 0.00 28.08 2.52
3108 3675 3.057019 TCGTTGACACAGGAAAGAATCG 58.943 45.455 0.00 0.00 0.00 3.34
3109 3676 2.157668 CGTTGACACAGGAAAGAATCGG 59.842 50.000 0.00 0.00 0.00 4.18
3110 3677 1.808411 TGACACAGGAAAGAATCGGC 58.192 50.000 0.00 0.00 0.00 5.54
3111 3678 0.721718 GACACAGGAAAGAATCGGCG 59.278 55.000 0.00 0.00 0.00 6.46
3112 3679 0.673644 ACACAGGAAAGAATCGGCGG 60.674 55.000 7.21 0.00 0.00 6.13
3113 3680 1.745489 ACAGGAAAGAATCGGCGGC 60.745 57.895 7.21 0.00 0.00 6.53
3114 3681 2.511600 AGGAAAGAATCGGCGGCG 60.512 61.111 27.15 27.15 0.00 6.46
3115 3682 3.573491 GGAAAGAATCGGCGGCGG 61.573 66.667 31.73 13.01 0.00 6.13
3116 3683 2.818274 GAAAGAATCGGCGGCGGT 60.818 61.111 31.73 23.77 0.00 5.68
3117 3684 2.810012 GAAAGAATCGGCGGCGGTC 61.810 63.158 31.73 26.27 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 2.741985 TCGCCGAAGTCGTACCGA 60.742 61.111 0.00 2.62 37.74 4.69
281 286 6.631971 AGATAACCGTAACTAGGTAGCTTC 57.368 41.667 0.00 0.00 41.95 3.86
339 344 1.902508 CCACACTAAGAGAAGCCCTGA 59.097 52.381 0.00 0.00 0.00 3.86
351 363 3.027412 ACATTGCACAAACCCACACTAA 58.973 40.909 0.00 0.00 0.00 2.24
352 364 2.660572 ACATTGCACAAACCCACACTA 58.339 42.857 0.00 0.00 0.00 2.74
353 365 1.484038 ACATTGCACAAACCCACACT 58.516 45.000 0.00 0.00 0.00 3.55
360 372 5.895889 GTGAAATCGAAAACATTGCACAAAC 59.104 36.000 2.54 0.00 39.00 2.93
367 379 5.115472 CCAACGAGTGAAATCGAAAACATTG 59.885 40.000 7.20 0.27 45.56 2.82
370 382 3.002862 CCCAACGAGTGAAATCGAAAACA 59.997 43.478 7.20 0.00 45.56 2.83
411 423 3.410631 TGCTCCTTTAACATGACCGAA 57.589 42.857 0.00 0.00 0.00 4.30
413 425 4.188462 TGTATGCTCCTTTAACATGACCG 58.812 43.478 0.00 0.00 0.00 4.79
447 463 6.815089 TGCTTGGTATCACTTTGAAATTTGT 58.185 32.000 0.00 0.00 0.00 2.83
455 471 2.553602 TGTGCTGCTTGGTATCACTTTG 59.446 45.455 0.00 0.00 0.00 2.77
457 473 2.566833 TGTGCTGCTTGGTATCACTT 57.433 45.000 0.00 0.00 0.00 3.16
470 486 1.211969 GTTGAGCCTGCATGTGCTG 59.788 57.895 9.91 5.75 42.66 4.41
471 487 2.330372 CGTTGAGCCTGCATGTGCT 61.330 57.895 6.55 5.33 42.66 4.40
475 491 0.592637 TCAAACGTTGAGCCTGCATG 59.407 50.000 0.00 0.00 34.08 4.06
487 503 5.964958 AGGTGAAATGAATCATCAAACGT 57.035 34.783 0.00 0.00 39.49 3.99
488 504 6.380995 TGAAGGTGAAATGAATCATCAAACG 58.619 36.000 0.00 0.00 39.49 3.60
513 531 2.872038 GCGTCTCAAATGTTCCCAGAGT 60.872 50.000 0.00 0.00 0.00 3.24
518 536 1.468914 GAAGGCGTCTCAAATGTTCCC 59.531 52.381 0.00 0.00 0.00 3.97
519 537 2.427506 AGAAGGCGTCTCAAATGTTCC 58.572 47.619 0.00 0.00 0.00 3.62
532 550 2.125350 GCTGGTCAGGAGAAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
538 563 4.463879 CGCCCAGCTGGTCAGGAG 62.464 72.222 30.63 15.52 36.04 3.69
733 778 4.386049 CGACATATAGCTGGAACGGATTTC 59.614 45.833 0.00 0.00 36.31 2.17
754 799 1.544691 GAGTGGAGTAGAAAGTGCCGA 59.455 52.381 0.00 0.00 0.00 5.54
758 803 4.950050 ACTTGTGAGTGGAGTAGAAAGTG 58.050 43.478 0.00 0.00 33.99 3.16
804 849 2.610859 ATTGGTCCCGAGGGCACT 60.611 61.111 2.58 0.00 34.68 4.40
822 867 5.825151 ACTAGAGTGATACCCGGTTAACTAC 59.175 44.000 5.42 0.00 0.00 2.73
889 934 4.437682 TGTTCCCTCCTATATTTGGCTG 57.562 45.455 0.00 0.00 0.00 4.85
932 977 4.202749 TGGAGGGTTCACTCTAGGACTTTA 60.203 45.833 2.05 0.00 37.63 1.85
935 980 1.717077 TGGAGGGTTCACTCTAGGACT 59.283 52.381 2.05 0.00 37.63 3.85
1084 1130 1.047002 CCTCCTCCATCCTGTAGCTG 58.953 60.000 0.00 0.00 0.00 4.24
1085 1131 0.762461 GCCTCCTCCATCCTGTAGCT 60.762 60.000 0.00 0.00 0.00 3.32
1089 1135 2.765807 CCGCCTCCTCCATCCTGT 60.766 66.667 0.00 0.00 0.00 4.00
1090 1136 2.946988 TACCCGCCTCCTCCATCCTG 62.947 65.000 0.00 0.00 0.00 3.86
1188 1234 8.974060 AAACATTATATAAAGACCCGTCATGT 57.026 30.769 4.77 0.00 0.00 3.21
1193 1239 7.986889 ACGGTTAAACATTATATAAAGACCCGT 59.013 33.333 4.77 10.14 0.00 5.28
1203 1258 7.830201 TGAAAGGGTGACGGTTAAACATTATAT 59.170 33.333 0.00 0.00 0.00 0.86
1284 1345 6.149633 CCGTTTGCCCTAATATGAAAATAGC 58.850 40.000 0.00 0.00 0.00 2.97
1301 1363 0.596082 ACATTAGCACCACCGTTTGC 59.404 50.000 0.00 0.00 39.16 3.68
1310 1372 1.544724 TCAAGCCCAACATTAGCACC 58.455 50.000 0.00 0.00 0.00 5.01
1311 1373 3.658757 TTTCAAGCCCAACATTAGCAC 57.341 42.857 0.00 0.00 0.00 4.40
1312 1374 3.006752 CCTTTTCAAGCCCAACATTAGCA 59.993 43.478 0.00 0.00 0.00 3.49
1313 1375 3.588955 CCTTTTCAAGCCCAACATTAGC 58.411 45.455 0.00 0.00 0.00 3.09
1314 1376 3.578282 ACCCTTTTCAAGCCCAACATTAG 59.422 43.478 0.00 0.00 0.00 1.73
1315 1377 3.582164 ACCCTTTTCAAGCCCAACATTA 58.418 40.909 0.00 0.00 0.00 1.90
1316 1378 2.407562 ACCCTTTTCAAGCCCAACATT 58.592 42.857 0.00 0.00 0.00 2.71
1317 1379 2.101640 ACCCTTTTCAAGCCCAACAT 57.898 45.000 0.00 0.00 0.00 2.71
1318 1380 2.757894 TACCCTTTTCAAGCCCAACA 57.242 45.000 0.00 0.00 0.00 3.33
1319 1381 2.163613 CGATACCCTTTTCAAGCCCAAC 59.836 50.000 0.00 0.00 0.00 3.77
1320 1382 2.442413 CGATACCCTTTTCAAGCCCAA 58.558 47.619 0.00 0.00 0.00 4.12
1321 1383 1.340600 CCGATACCCTTTTCAAGCCCA 60.341 52.381 0.00 0.00 0.00 5.36
1322 1384 1.340697 ACCGATACCCTTTTCAAGCCC 60.341 52.381 0.00 0.00 0.00 5.19
1323 1385 1.743394 CACCGATACCCTTTTCAAGCC 59.257 52.381 0.00 0.00 0.00 4.35
1324 1386 1.132453 GCACCGATACCCTTTTCAAGC 59.868 52.381 0.00 0.00 0.00 4.01
1325 1387 2.711542 AGCACCGATACCCTTTTCAAG 58.288 47.619 0.00 0.00 0.00 3.02
1326 1388 2.871096 AGCACCGATACCCTTTTCAA 57.129 45.000 0.00 0.00 0.00 2.69
1327 1389 3.985019 TTAGCACCGATACCCTTTTCA 57.015 42.857 0.00 0.00 0.00 2.69
1328 1390 6.072673 CCAATATTAGCACCGATACCCTTTTC 60.073 42.308 0.00 0.00 0.00 2.29
1329 1391 5.768164 CCAATATTAGCACCGATACCCTTTT 59.232 40.000 0.00 0.00 0.00 2.27
1330 1392 5.313712 CCAATATTAGCACCGATACCCTTT 58.686 41.667 0.00 0.00 0.00 3.11
1331 1393 4.263331 CCCAATATTAGCACCGATACCCTT 60.263 45.833 0.00 0.00 0.00 3.95
1332 1394 3.263425 CCCAATATTAGCACCGATACCCT 59.737 47.826 0.00 0.00 0.00 4.34
1333 1395 3.606687 CCCAATATTAGCACCGATACCC 58.393 50.000 0.00 0.00 0.00 3.69
1410 1472 3.197790 CACCAGCGCCTCCATTCG 61.198 66.667 2.29 0.00 0.00 3.34
1411 1473 1.675641 AACACCAGCGCCTCCATTC 60.676 57.895 2.29 0.00 0.00 2.67
1412 1474 1.973281 CAACACCAGCGCCTCCATT 60.973 57.895 2.29 0.00 0.00 3.16
1413 1475 2.360350 CAACACCAGCGCCTCCAT 60.360 61.111 2.29 0.00 0.00 3.41
1414 1476 4.641645 CCAACACCAGCGCCTCCA 62.642 66.667 2.29 0.00 0.00 3.86
1435 1497 0.734889 CTACATTTGCTCCAAGGCCG 59.265 55.000 0.00 0.00 0.00 6.13
1439 1501 3.057315 CCAACACCTACATTTGCTCCAAG 60.057 47.826 0.00 0.00 0.00 3.61
1516 1578 3.490031 ATTCACACCAGCACCGGCA 62.490 57.895 0.00 0.00 44.61 5.69
1517 1579 2.672996 ATTCACACCAGCACCGGC 60.673 61.111 0.00 0.00 41.61 6.13
1518 1580 2.334946 CCATTCACACCAGCACCGG 61.335 63.158 0.00 0.00 0.00 5.28
1519 1581 1.300971 CTCCATTCACACCAGCACCG 61.301 60.000 0.00 0.00 0.00 4.94
1520 1582 0.962356 CCTCCATTCACACCAGCACC 60.962 60.000 0.00 0.00 0.00 5.01
1521 1583 1.589716 GCCTCCATTCACACCAGCAC 61.590 60.000 0.00 0.00 0.00 4.40
1522 1584 1.303561 GCCTCCATTCACACCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
1523 1585 2.401766 CGCCTCCATTCACACCAGC 61.402 63.158 0.00 0.00 0.00 4.85
1524 1586 2.401766 GCGCCTCCATTCACACCAG 61.402 63.158 0.00 0.00 0.00 4.00
1525 1587 1.549243 TAGCGCCTCCATTCACACCA 61.549 55.000 2.29 0.00 0.00 4.17
1526 1588 0.392461 TTAGCGCCTCCATTCACACC 60.392 55.000 2.29 0.00 0.00 4.16
1527 1589 0.727398 GTTAGCGCCTCCATTCACAC 59.273 55.000 2.29 0.00 0.00 3.82
1528 1590 0.739462 CGTTAGCGCCTCCATTCACA 60.739 55.000 2.29 0.00 0.00 3.58
1529 1591 0.739813 ACGTTAGCGCCTCCATTCAC 60.740 55.000 2.29 0.00 42.83 3.18
1530 1592 0.036765 AACGTTAGCGCCTCCATTCA 60.037 50.000 2.29 0.00 42.83 2.57
1531 1593 0.373716 CAACGTTAGCGCCTCCATTC 59.626 55.000 2.29 0.00 42.83 2.67
1532 1594 1.024579 CCAACGTTAGCGCCTCCATT 61.025 55.000 2.29 0.00 42.83 3.16
1533 1595 1.449601 CCAACGTTAGCGCCTCCAT 60.450 57.895 2.29 0.00 42.83 3.41
1534 1596 2.047655 CCAACGTTAGCGCCTCCA 60.048 61.111 2.29 0.00 42.83 3.86
1535 1597 1.810030 CTCCAACGTTAGCGCCTCC 60.810 63.158 2.29 0.00 42.83 4.30
1536 1598 2.453638 GCTCCAACGTTAGCGCCTC 61.454 63.158 2.29 0.00 42.83 4.70
1537 1599 2.434359 GCTCCAACGTTAGCGCCT 60.434 61.111 2.29 0.00 42.83 5.52
1538 1600 2.434359 AGCTCCAACGTTAGCGCC 60.434 61.111 15.45 0.00 43.63 6.53
1539 1601 2.740714 CCAGCTCCAACGTTAGCGC 61.741 63.158 15.45 8.82 43.63 5.92
1540 1602 1.352156 GACCAGCTCCAACGTTAGCG 61.352 60.000 15.45 11.06 43.63 4.26
1541 1603 0.037232 AGACCAGCTCCAACGTTAGC 60.037 55.000 13.97 13.97 39.08 3.09
1542 1604 2.069273 CAAGACCAGCTCCAACGTTAG 58.931 52.381 0.00 0.00 0.00 2.34
1543 1605 1.270625 CCAAGACCAGCTCCAACGTTA 60.271 52.381 0.00 0.00 0.00 3.18
1544 1606 0.535102 CCAAGACCAGCTCCAACGTT 60.535 55.000 0.00 0.00 0.00 3.99
1545 1607 1.071471 CCAAGACCAGCTCCAACGT 59.929 57.895 0.00 0.00 0.00 3.99
1546 1608 0.671781 CTCCAAGACCAGCTCCAACG 60.672 60.000 0.00 0.00 0.00 4.10
1547 1609 0.957888 GCTCCAAGACCAGCTCCAAC 60.958 60.000 0.00 0.00 32.48 3.77
1548 1610 1.376466 GCTCCAAGACCAGCTCCAA 59.624 57.895 0.00 0.00 32.48 3.53
1549 1611 1.418097 TTGCTCCAAGACCAGCTCCA 61.418 55.000 0.00 0.00 36.53 3.86
1550 1612 0.250901 TTTGCTCCAAGACCAGCTCC 60.251 55.000 0.00 0.00 36.53 4.70
1551 1613 1.471684 CATTTGCTCCAAGACCAGCTC 59.528 52.381 0.00 0.00 36.53 4.09
1552 1614 1.202976 ACATTTGCTCCAAGACCAGCT 60.203 47.619 0.00 0.00 36.53 4.24
1553 1615 1.251251 ACATTTGCTCCAAGACCAGC 58.749 50.000 0.00 0.00 36.08 4.85
1554 1616 3.012518 CCTACATTTGCTCCAAGACCAG 58.987 50.000 0.00 0.00 0.00 4.00
1555 1617 2.375174 ACCTACATTTGCTCCAAGACCA 59.625 45.455 0.00 0.00 0.00 4.02
1556 1618 2.749621 CACCTACATTTGCTCCAAGACC 59.250 50.000 0.00 0.00 0.00 3.85
1557 1619 2.749621 CCACCTACATTTGCTCCAAGAC 59.250 50.000 0.00 0.00 0.00 3.01
1558 1620 2.879756 GCCACCTACATTTGCTCCAAGA 60.880 50.000 0.00 0.00 0.00 3.02
1559 1621 1.474077 GCCACCTACATTTGCTCCAAG 59.526 52.381 0.00 0.00 0.00 3.61
1560 1622 1.202989 TGCCACCTACATTTGCTCCAA 60.203 47.619 0.00 0.00 0.00 3.53
1561 1623 0.403655 TGCCACCTACATTTGCTCCA 59.596 50.000 0.00 0.00 0.00 3.86
1562 1624 1.544724 TTGCCACCTACATTTGCTCC 58.455 50.000 0.00 0.00 0.00 4.70
1563 1625 2.736400 GCATTGCCACCTACATTTGCTC 60.736 50.000 0.00 0.00 0.00 4.26
1564 1626 1.205417 GCATTGCCACCTACATTTGCT 59.795 47.619 0.00 0.00 0.00 3.91
1565 1627 1.205417 AGCATTGCCACCTACATTTGC 59.795 47.619 4.70 0.00 0.00 3.68
1566 1628 2.417651 CCAGCATTGCCACCTACATTTG 60.418 50.000 4.70 0.00 0.00 2.32
1567 1629 1.826720 CCAGCATTGCCACCTACATTT 59.173 47.619 4.70 0.00 0.00 2.32
1568 1630 1.272648 ACCAGCATTGCCACCTACATT 60.273 47.619 4.70 0.00 0.00 2.71
1569 1631 0.332632 ACCAGCATTGCCACCTACAT 59.667 50.000 4.70 0.00 0.00 2.29
1570 1632 0.322456 GACCAGCATTGCCACCTACA 60.322 55.000 4.70 0.00 0.00 2.74
1571 1633 0.035056 AGACCAGCATTGCCACCTAC 60.035 55.000 4.70 0.00 0.00 3.18
1572 1634 0.698238 AAGACCAGCATTGCCACCTA 59.302 50.000 4.70 0.00 0.00 3.08
1573 1635 0.896940 CAAGACCAGCATTGCCACCT 60.897 55.000 4.70 0.00 0.00 4.00
1574 1636 1.588082 CAAGACCAGCATTGCCACC 59.412 57.895 4.70 0.00 0.00 4.61
1575 1637 1.181098 ACCAAGACCAGCATTGCCAC 61.181 55.000 4.70 0.00 0.00 5.01
1576 1638 1.153524 ACCAAGACCAGCATTGCCA 59.846 52.632 4.70 0.00 0.00 4.92
1577 1639 1.181098 ACACCAAGACCAGCATTGCC 61.181 55.000 4.70 0.00 0.00 4.52
1578 1640 0.242017 GACACCAAGACCAGCATTGC 59.758 55.000 0.00 0.00 0.00 3.56
1579 1641 1.538512 CTGACACCAAGACCAGCATTG 59.461 52.381 0.00 0.00 0.00 2.82
1580 1642 1.143684 ACTGACACCAAGACCAGCATT 59.856 47.619 0.00 0.00 0.00 3.56
1581 1643 0.767375 ACTGACACCAAGACCAGCAT 59.233 50.000 0.00 0.00 0.00 3.79
1598 1660 6.406177 CCAGCACCAATAAATCTATTTGCACT 60.406 38.462 0.00 0.00 35.22 4.40
1604 1666 6.127366 CCAACACCAGCACCAATAAATCTATT 60.127 38.462 0.00 0.00 0.00 1.73
1608 1670 3.258123 ACCAACACCAGCACCAATAAATC 59.742 43.478 0.00 0.00 0.00 2.17
1611 1673 1.959985 CACCAACACCAGCACCAATAA 59.040 47.619 0.00 0.00 0.00 1.40
1901 1963 2.745884 CGCCTCCATTCGCACCAA 60.746 61.111 0.00 0.00 0.00 3.67
1908 1970 1.675641 AACACCAGCGCCTCCATTC 60.676 57.895 2.29 0.00 0.00 2.67
1909 1971 1.973281 CAACACCAGCGCCTCCATT 60.973 57.895 2.29 0.00 0.00 3.16
1910 1972 2.360350 CAACACCAGCGCCTCCAT 60.360 61.111 2.29 0.00 0.00 3.41
1912 1974 4.643387 ACCAACACCAGCGCCTCC 62.643 66.667 2.29 0.00 0.00 4.30
1913 1975 3.357079 CACCAACACCAGCGCCTC 61.357 66.667 2.29 0.00 0.00 4.70
1916 1978 4.332637 CAGCACCAACACCAGCGC 62.333 66.667 0.00 0.00 0.00 5.92
1917 1979 3.663176 CCAGCACCAACACCAGCG 61.663 66.667 0.00 0.00 0.00 5.18
1954 2016 2.361610 ACCCGCATTGGCTCCAAG 60.362 61.111 7.47 1.50 39.47 3.61
1979 2513 2.993471 GCACCTCCATTTGCACCGG 61.993 63.158 0.00 0.00 38.68 5.28
1989 2529 2.382770 ACCAACACCAGCACCTCCA 61.383 57.895 0.00 0.00 0.00 3.86
1992 2532 2.519302 GCACCAACACCAGCACCT 60.519 61.111 0.00 0.00 0.00 4.00
2038 2578 1.474077 GGCACCTACATTTGCTCCAAG 59.526 52.381 0.00 0.00 38.85 3.61
2076 2616 3.761218 CACCAATACCTTTATGTGCACCA 59.239 43.478 15.69 2.61 0.00 4.17
2104 2644 1.688197 CCTTCATTTGCCAACACCAGT 59.312 47.619 0.00 0.00 0.00 4.00
2105 2645 1.962807 TCCTTCATTTGCCAACACCAG 59.037 47.619 0.00 0.00 0.00 4.00
2138 2678 1.069227 CACCGCCTTTAGTTGACTTGC 60.069 52.381 0.00 0.00 0.00 4.01
2139 2679 2.218603 ACACCGCCTTTAGTTGACTTG 58.781 47.619 0.00 0.00 0.00 3.16
2154 2694 1.596260 TCGTAGCTAGAATCGACACCG 59.404 52.381 0.00 0.00 37.07 4.94
2208 2758 9.573133 CTTGTTCTTTGAAATGTAGTCAAAACT 57.427 29.630 1.69 0.00 42.73 2.66
2347 2911 1.012086 CCAATGTGAGGCATGACTCG 58.988 55.000 23.51 8.69 40.39 4.18
2398 2962 8.677871 TCTCTTCTCTAGAATTATCTCTGGGAT 58.322 37.037 0.00 0.00 37.10 3.85
2618 3183 1.758862 TGAGACATGATGTGCCGAGAT 59.241 47.619 1.23 0.00 0.00 2.75
2642 3207 8.305441 TGTGTAGTTGTTTGTAGTGATGTATG 57.695 34.615 0.00 0.00 0.00 2.39
2670 3236 9.021807 GCTAAGTCTAGATACATTGGGTACATA 57.978 37.037 0.00 0.00 34.07 2.29
2684 3250 6.183360 CCCTTTGAGACATGCTAAGTCTAGAT 60.183 42.308 0.00 0.00 45.79 1.98
2710 3276 2.504175 TCCCACCCTAGCATAGTTGTTC 59.496 50.000 0.00 0.00 36.82 3.18
2735 3301 1.202722 CCTTCGGGTGTGTTTGGTAGT 60.203 52.381 0.00 0.00 0.00 2.73
2745 3311 0.324943 CTTGTGATCCCTTCGGGTGT 59.675 55.000 0.00 0.00 44.74 4.16
2751 3317 2.019984 GTGCATCCTTGTGATCCCTTC 58.980 52.381 0.00 0.00 0.00 3.46
2766 3332 2.250031 TGCTTTCAAAGATGGGTGCAT 58.750 42.857 0.00 0.00 0.00 3.96
2778 3344 1.774110 TGGTGCCTCTTTGCTTTCAA 58.226 45.000 0.00 0.00 0.00 2.69
2790 3356 3.788227 TCTAGAAATGTGTTGGTGCCT 57.212 42.857 0.00 0.00 0.00 4.75
2796 3362 7.699391 CCTTGCATGTTATCTAGAAATGTGTTG 59.301 37.037 0.00 0.00 0.00 3.33
2797 3363 7.629222 GCCTTGCATGTTATCTAGAAATGTGTT 60.629 37.037 0.00 0.00 0.00 3.32
2834 3401 5.182570 GGATTAGGTGTGGTTTTACTGTTCC 59.817 44.000 0.00 0.00 0.00 3.62
2847 3414 0.105039 GAGAGCGGGGATTAGGTGTG 59.895 60.000 0.00 0.00 0.00 3.82
2848 3415 0.032017 AGAGAGCGGGGATTAGGTGT 60.032 55.000 0.00 0.00 0.00 4.16
2899 3466 3.559655 CGGTCAGAAATGTTTGACAGACA 59.440 43.478 8.70 0.70 44.23 3.41
2903 3470 2.875933 GGACGGTCAGAAATGTTTGACA 59.124 45.455 10.76 0.00 44.23 3.58
2904 3471 2.875933 TGGACGGTCAGAAATGTTTGAC 59.124 45.455 10.76 0.00 42.25 3.18
2906 3473 3.980646 TTGGACGGTCAGAAATGTTTG 57.019 42.857 10.76 0.00 0.00 2.93
2939 3506 2.552315 CCTAGTTCGCCACAAACATTGT 59.448 45.455 0.00 0.00 46.75 2.71
2964 3531 1.026718 GTAGCTGCCCTTGCGACATT 61.027 55.000 0.00 0.00 41.78 2.71
2981 3548 3.385755 GGTCCAAAATAGCTACGGGAGTA 59.614 47.826 0.00 0.00 46.17 2.59
2983 3550 2.434702 AGGTCCAAAATAGCTACGGGAG 59.565 50.000 0.00 0.00 0.00 4.30
2984 3551 2.474112 AGGTCCAAAATAGCTACGGGA 58.526 47.619 0.00 0.00 0.00 5.14
2985 3552 3.277142 AAGGTCCAAAATAGCTACGGG 57.723 47.619 0.00 0.00 0.00 5.28
2986 3553 4.007659 ACAAAGGTCCAAAATAGCTACGG 58.992 43.478 0.00 0.00 0.00 4.02
2987 3554 4.142687 CCACAAAGGTCCAAAATAGCTACG 60.143 45.833 0.00 0.00 0.00 3.51
2988 3555 5.310720 CCACAAAGGTCCAAAATAGCTAC 57.689 43.478 0.00 0.00 0.00 3.58
3002 3569 1.974236 TGGCCCAATTAACCACAAAGG 59.026 47.619 0.00 0.00 45.67 3.11
3003 3570 2.896685 TCTGGCCCAATTAACCACAAAG 59.103 45.455 0.00 0.00 0.00 2.77
3004 3571 2.964209 TCTGGCCCAATTAACCACAAA 58.036 42.857 0.00 0.00 0.00 2.83
3005 3572 2.685106 TCTGGCCCAATTAACCACAA 57.315 45.000 0.00 0.00 0.00 3.33
3006 3573 2.917713 ATCTGGCCCAATTAACCACA 57.082 45.000 0.00 0.00 0.00 4.17
3007 3574 4.503910 GAAAATCTGGCCCAATTAACCAC 58.496 43.478 0.00 0.00 0.00 4.16
3008 3575 3.517500 GGAAAATCTGGCCCAATTAACCA 59.482 43.478 0.00 0.00 0.00 3.67
3009 3576 3.774766 AGGAAAATCTGGCCCAATTAACC 59.225 43.478 0.00 7.27 0.00 2.85
3010 3577 4.383010 CCAGGAAAATCTGGCCCAATTAAC 60.383 45.833 0.00 0.00 46.47 2.01
3011 3578 3.774216 CCAGGAAAATCTGGCCCAATTAA 59.226 43.478 0.00 0.00 46.47 1.40
3012 3579 3.373830 CCAGGAAAATCTGGCCCAATTA 58.626 45.455 0.00 0.00 46.47 1.40
3013 3580 2.190538 CCAGGAAAATCTGGCCCAATT 58.809 47.619 0.00 0.00 46.47 2.32
3014 3581 1.870064 CCAGGAAAATCTGGCCCAAT 58.130 50.000 0.00 0.00 46.47 3.16
3015 3582 3.379617 CCAGGAAAATCTGGCCCAA 57.620 52.632 0.00 0.00 46.47 4.12
3021 3588 0.897621 GGGCCAACCAGGAAAATCTG 59.102 55.000 4.39 0.00 41.22 2.90
3022 3589 0.486879 TGGGCCAACCAGGAAAATCT 59.513 50.000 2.13 0.00 46.80 2.40
3023 3590 3.065462 TGGGCCAACCAGGAAAATC 57.935 52.632 2.13 0.00 46.80 2.17
3032 3599 2.022240 TTCGTTGCTTTGGGCCAACC 62.022 55.000 20.79 13.68 40.92 3.77
3033 3600 0.597377 CTTCGTTGCTTTGGGCCAAC 60.597 55.000 20.79 9.39 40.92 3.77
3034 3601 1.739049 CTTCGTTGCTTTGGGCCAA 59.261 52.632 16.66 16.66 40.92 4.52
3035 3602 2.199652 CCTTCGTTGCTTTGGGCCA 61.200 57.895 0.00 0.00 40.92 5.36
3036 3603 1.460273 TTCCTTCGTTGCTTTGGGCC 61.460 55.000 0.00 0.00 40.92 5.80
3037 3604 0.603065 ATTCCTTCGTTGCTTTGGGC 59.397 50.000 0.00 0.00 42.22 5.36
3038 3605 2.162408 GAGATTCCTTCGTTGCTTTGGG 59.838 50.000 0.00 0.00 0.00 4.12
3039 3606 2.813754 TGAGATTCCTTCGTTGCTTTGG 59.186 45.455 0.00 0.00 0.00 3.28
3040 3607 4.409570 CATGAGATTCCTTCGTTGCTTTG 58.590 43.478 0.00 0.00 0.00 2.77
3041 3608 3.119708 GCATGAGATTCCTTCGTTGCTTT 60.120 43.478 0.00 0.00 0.00 3.51
3042 3609 2.421424 GCATGAGATTCCTTCGTTGCTT 59.579 45.455 0.00 0.00 0.00 3.91
3043 3610 2.012673 GCATGAGATTCCTTCGTTGCT 58.987 47.619 0.00 0.00 0.00 3.91
3044 3611 1.739466 TGCATGAGATTCCTTCGTTGC 59.261 47.619 0.00 0.00 0.00 4.17
3045 3612 3.438087 ACTTGCATGAGATTCCTTCGTTG 59.562 43.478 6.60 0.00 0.00 4.10
3046 3613 3.438087 CACTTGCATGAGATTCCTTCGTT 59.562 43.478 6.60 0.00 0.00 3.85
3047 3614 3.005554 CACTTGCATGAGATTCCTTCGT 58.994 45.455 6.60 0.00 0.00 3.85
3048 3615 3.005554 ACACTTGCATGAGATTCCTTCG 58.994 45.455 6.60 0.00 0.00 3.79
3049 3616 4.142513 GGAACACTTGCATGAGATTCCTTC 60.143 45.833 18.29 7.44 34.97 3.46
3050 3617 3.760684 GGAACACTTGCATGAGATTCCTT 59.239 43.478 18.29 0.59 34.97 3.36
3051 3618 3.350833 GGAACACTTGCATGAGATTCCT 58.649 45.455 18.29 0.00 34.97 3.36
3052 3619 2.424956 GGGAACACTTGCATGAGATTCC 59.575 50.000 17.77 17.77 36.03 3.01
3053 3620 3.350833 AGGGAACACTTGCATGAGATTC 58.649 45.455 6.60 6.64 0.00 2.52
3054 3621 3.446442 AGGGAACACTTGCATGAGATT 57.554 42.857 6.60 0.00 0.00 2.40
3055 3622 4.574674 TTAGGGAACACTTGCATGAGAT 57.425 40.909 6.60 0.00 0.00 2.75
3056 3623 4.041567 TCTTTAGGGAACACTTGCATGAGA 59.958 41.667 6.60 0.00 0.00 3.27
3057 3624 4.326826 TCTTTAGGGAACACTTGCATGAG 58.673 43.478 6.60 0.66 0.00 2.90
3058 3625 4.365514 TCTTTAGGGAACACTTGCATGA 57.634 40.909 6.60 0.00 0.00 3.07
3059 3626 5.452078 TTTCTTTAGGGAACACTTGCATG 57.548 39.130 0.00 0.00 0.00 4.06
3060 3627 7.775053 TTATTTCTTTAGGGAACACTTGCAT 57.225 32.000 0.00 0.00 0.00 3.96
3061 3628 7.589958 TTTATTTCTTTAGGGAACACTTGCA 57.410 32.000 0.00 0.00 0.00 4.08
3062 3629 9.140286 GAATTTATTTCTTTAGGGAACACTTGC 57.860 33.333 0.00 0.00 0.00 4.01
3063 3630 9.341899 CGAATTTATTTCTTTAGGGAACACTTG 57.658 33.333 0.00 0.00 31.73 3.16
3064 3631 9.074576 ACGAATTTATTTCTTTAGGGAACACTT 57.925 29.630 0.00 0.00 31.73 3.16
3065 3632 8.631480 ACGAATTTATTTCTTTAGGGAACACT 57.369 30.769 0.00 0.00 31.73 3.55
3066 3633 9.124807 CAACGAATTTATTTCTTTAGGGAACAC 57.875 33.333 0.00 0.00 31.73 3.32
3067 3634 9.069082 TCAACGAATTTATTTCTTTAGGGAACA 57.931 29.630 0.00 0.00 31.73 3.18
3068 3635 9.338291 GTCAACGAATTTATTTCTTTAGGGAAC 57.662 33.333 0.00 0.00 31.73 3.62
3069 3636 9.069082 TGTCAACGAATTTATTTCTTTAGGGAA 57.931 29.630 0.00 0.00 31.73 3.97
3070 3637 8.508875 GTGTCAACGAATTTATTTCTTTAGGGA 58.491 33.333 0.00 0.00 31.73 4.20
3071 3638 8.293867 TGTGTCAACGAATTTATTTCTTTAGGG 58.706 33.333 0.00 0.00 31.73 3.53
3072 3639 9.329913 CTGTGTCAACGAATTTATTTCTTTAGG 57.670 33.333 0.00 0.00 31.73 2.69
3073 3640 9.329913 CCTGTGTCAACGAATTTATTTCTTTAG 57.670 33.333 0.00 0.00 31.73 1.85
3074 3641 9.058174 TCCTGTGTCAACGAATTTATTTCTTTA 57.942 29.630 0.00 0.00 31.73 1.85
3075 3642 7.936584 TCCTGTGTCAACGAATTTATTTCTTT 58.063 30.769 0.00 0.00 31.73 2.52
3076 3643 7.504924 TCCTGTGTCAACGAATTTATTTCTT 57.495 32.000 0.00 0.00 31.73 2.52
3077 3644 7.504924 TTCCTGTGTCAACGAATTTATTTCT 57.495 32.000 0.00 0.00 31.73 2.52
3078 3645 8.073768 TCTTTCCTGTGTCAACGAATTTATTTC 58.926 33.333 0.00 0.00 0.00 2.17
3079 3646 7.936584 TCTTTCCTGTGTCAACGAATTTATTT 58.063 30.769 0.00 0.00 0.00 1.40
3080 3647 7.504924 TCTTTCCTGTGTCAACGAATTTATT 57.495 32.000 0.00 0.00 0.00 1.40
3081 3648 7.504924 TTCTTTCCTGTGTCAACGAATTTAT 57.495 32.000 0.00 0.00 0.00 1.40
3082 3649 6.928979 TTCTTTCCTGTGTCAACGAATTTA 57.071 33.333 0.00 0.00 0.00 1.40
3083 3650 5.828299 TTCTTTCCTGTGTCAACGAATTT 57.172 34.783 0.00 0.00 0.00 1.82
3084 3651 5.334105 CGATTCTTTCCTGTGTCAACGAATT 60.334 40.000 0.00 0.00 0.00 2.17
3085 3652 4.152402 CGATTCTTTCCTGTGTCAACGAAT 59.848 41.667 0.00 0.00 0.00 3.34
3086 3653 3.493129 CGATTCTTTCCTGTGTCAACGAA 59.507 43.478 0.00 0.00 0.00 3.85
3087 3654 3.057019 CGATTCTTTCCTGTGTCAACGA 58.943 45.455 0.00 0.00 0.00 3.85
3088 3655 2.157668 CCGATTCTTTCCTGTGTCAACG 59.842 50.000 0.00 0.00 0.00 4.10
3089 3656 2.095718 GCCGATTCTTTCCTGTGTCAAC 60.096 50.000 0.00 0.00 0.00 3.18
3090 3657 2.151202 GCCGATTCTTTCCTGTGTCAA 58.849 47.619 0.00 0.00 0.00 3.18
3091 3658 1.808411 GCCGATTCTTTCCTGTGTCA 58.192 50.000 0.00 0.00 0.00 3.58
3092 3659 0.721718 CGCCGATTCTTTCCTGTGTC 59.278 55.000 0.00 0.00 0.00 3.67
3093 3660 0.673644 CCGCCGATTCTTTCCTGTGT 60.674 55.000 0.00 0.00 0.00 3.72
3094 3661 1.982073 GCCGCCGATTCTTTCCTGTG 61.982 60.000 0.00 0.00 0.00 3.66
3095 3662 1.745489 GCCGCCGATTCTTTCCTGT 60.745 57.895 0.00 0.00 0.00 4.00
3096 3663 2.813179 CGCCGCCGATTCTTTCCTG 61.813 63.158 0.00 0.00 36.29 3.86
3097 3664 2.511600 CGCCGCCGATTCTTTCCT 60.512 61.111 0.00 0.00 36.29 3.36
3098 3665 3.573491 CCGCCGCCGATTCTTTCC 61.573 66.667 0.00 0.00 36.29 3.13
3099 3666 2.810012 GACCGCCGCCGATTCTTTC 61.810 63.158 0.00 0.00 36.29 2.62
3100 3667 2.818274 GACCGCCGCCGATTCTTT 60.818 61.111 0.00 0.00 36.29 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.