Multiple sequence alignment - TraesCS4A01G030000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G030000 chr4A 100.000 2459 0 0 1 2459 22082032 22084490 0.000000e+00 4542
1 TraesCS4A01G030000 chr4D 95.766 1110 41 4 504 1611 444884958 444886063 0.000000e+00 1784
2 TraesCS4A01G030000 chr4D 95.322 171 7 1 1608 1777 444886097 444886267 1.120000e-68 270
3 TraesCS4A01G030000 chr4B 94.365 1118 50 3 504 1611 555215077 555213963 0.000000e+00 1703
4 TraesCS4A01G030000 chr4B 92.483 1011 65 6 504 1504 555539595 555538586 0.000000e+00 1435
5 TraesCS4A01G030000 chr4B 97.947 682 14 0 1778 2459 32962370 32963051 0.000000e+00 1182
6 TraesCS4A01G030000 chr4B 95.266 169 6 2 1608 1774 555213928 555213760 1.450000e-67 267
7 TraesCS4A01G030000 chr4B 92.398 171 11 2 1608 1777 555515673 555515504 2.440000e-60 243
8 TraesCS4A01G030000 chr5A 97.956 685 14 0 1775 2459 3305382 3306066 0.000000e+00 1188
9 TraesCS4A01G030000 chr7B 97.664 685 16 0 1775 2459 473635611 473636295 0.000000e+00 1177
10 TraesCS4A01G030000 chr7B 95.468 684 31 0 1776 2459 745587697 745588380 0.000000e+00 1092
11 TraesCS4A01G030000 chr1A 97.804 683 14 1 1777 2459 497247113 497247794 0.000000e+00 1177
12 TraesCS4A01G030000 chr5B 97.522 686 15 2 1774 2459 669727080 669726397 0.000000e+00 1171
13 TraesCS4A01G030000 chr5B 92.576 229 15 2 276 502 337836263 337836491 6.560000e-86 327
14 TraesCS4A01G030000 chr2B 97.080 685 19 1 1775 2459 17516895 17516212 0.000000e+00 1153
15 TraesCS4A01G030000 chr2B 89.474 475 40 8 35 503 66467830 66467360 2.110000e-165 592
16 TraesCS4A01G030000 chr3B 95.210 689 32 1 1771 2459 11226411 11227098 0.000000e+00 1088
17 TraesCS4A01G030000 chr3B 92.308 260 19 1 35 293 85081586 85081327 3.860000e-98 368
18 TraesCS4A01G030000 chr3A 95.328 685 31 1 1775 2459 40869268 40868585 0.000000e+00 1086
19 TraesCS4A01G030000 chr3A 86.765 476 47 9 35 503 20506839 20506373 1.300000e-142 516
20 TraesCS4A01G030000 chr3A 92.070 227 18 0 253 479 13347395 13347621 1.100000e-83 320
21 TraesCS4A01G030000 chr2D 89.625 453 44 3 35 485 638879377 638879828 7.630000e-160 573
22 TraesCS4A01G030000 chr2D 80.537 447 76 8 40 479 445938184 445937742 1.410000e-87 333
23 TraesCS4A01G030000 chr7D 92.097 329 25 1 158 485 81888259 81887931 1.720000e-126 462
24 TraesCS4A01G030000 chr7A 85.645 411 54 5 69 479 1446563 1446968 6.280000e-116 427
25 TraesCS4A01G030000 chr6D 91.791 268 16 6 29 293 420707049 420707313 3.860000e-98 368
26 TraesCS4A01G030000 chr6B 92.308 260 19 1 35 293 33970418 33970677 3.860000e-98 368
27 TraesCS4A01G030000 chr1B 92.342 222 13 4 292 511 352332157 352331938 1.840000e-81 313


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G030000 chr4A 22082032 22084490 2458 False 4542 4542 100.0000 1 2459 1 chr4A.!!$F1 2458
1 TraesCS4A01G030000 chr4D 444884958 444886267 1309 False 1027 1784 95.5440 504 1777 2 chr4D.!!$F1 1273
2 TraesCS4A01G030000 chr4B 555538586 555539595 1009 True 1435 1435 92.4830 504 1504 1 chr4B.!!$R2 1000
3 TraesCS4A01G030000 chr4B 32962370 32963051 681 False 1182 1182 97.9470 1778 2459 1 chr4B.!!$F1 681
4 TraesCS4A01G030000 chr4B 555213760 555215077 1317 True 985 1703 94.8155 504 1774 2 chr4B.!!$R3 1270
5 TraesCS4A01G030000 chr5A 3305382 3306066 684 False 1188 1188 97.9560 1775 2459 1 chr5A.!!$F1 684
6 TraesCS4A01G030000 chr7B 473635611 473636295 684 False 1177 1177 97.6640 1775 2459 1 chr7B.!!$F1 684
7 TraesCS4A01G030000 chr7B 745587697 745588380 683 False 1092 1092 95.4680 1776 2459 1 chr7B.!!$F2 683
8 TraesCS4A01G030000 chr1A 497247113 497247794 681 False 1177 1177 97.8040 1777 2459 1 chr1A.!!$F1 682
9 TraesCS4A01G030000 chr5B 669726397 669727080 683 True 1171 1171 97.5220 1774 2459 1 chr5B.!!$R1 685
10 TraesCS4A01G030000 chr2B 17516212 17516895 683 True 1153 1153 97.0800 1775 2459 1 chr2B.!!$R1 684
11 TraesCS4A01G030000 chr3B 11226411 11227098 687 False 1088 1088 95.2100 1771 2459 1 chr3B.!!$F1 688
12 TraesCS4A01G030000 chr3A 40868585 40869268 683 True 1086 1086 95.3280 1775 2459 1 chr3A.!!$R2 684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.036875 GCTAGGGTTTGTGTCCTGCT 59.963 55.0 0.00 0.00 34.75 4.24 F
792 803 0.037232 CGATCCCCGGGCTTATCTTC 60.037 60.0 17.73 2.24 33.91 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1440 1452 1.153647 CTATTGCACGGCCACGAGA 60.154 57.895 2.24 0.0 44.6 4.04 R
2213 2265 0.893727 AAGATGGTGGTCGGTTTGGC 60.894 55.000 0.00 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.785982 AGATAAAGATAAAGATAGGGTTTCTGC 57.214 33.333 0.00 0.00 0.00 4.26
51 52 8.926092 ATAAAGATAAAGATAGGGTTTCTGCC 57.074 34.615 0.00 0.00 0.00 4.85
52 53 6.582929 AAGATAAAGATAGGGTTTCTGCCT 57.417 37.500 0.00 0.00 0.00 4.75
53 54 6.181206 AGATAAAGATAGGGTTTCTGCCTC 57.819 41.667 0.00 0.00 0.00 4.70
54 55 3.653835 AAAGATAGGGTTTCTGCCTCC 57.346 47.619 0.00 0.00 0.00 4.30
55 56 1.512735 AGATAGGGTTTCTGCCTCCC 58.487 55.000 0.00 0.00 41.36 4.30
56 57 0.106894 GATAGGGTTTCTGCCTCCCG 59.893 60.000 0.00 0.00 45.27 5.14
57 58 0.620700 ATAGGGTTTCTGCCTCCCGT 60.621 55.000 0.00 0.00 45.27 5.28
58 59 1.262640 TAGGGTTTCTGCCTCCCGTC 61.263 60.000 0.00 0.00 45.27 4.79
59 60 2.434359 GGTTTCTGCCTCCCGTCG 60.434 66.667 0.00 0.00 0.00 5.12
60 61 3.119096 GTTTCTGCCTCCCGTCGC 61.119 66.667 0.00 0.00 0.00 5.19
61 62 3.311110 TTTCTGCCTCCCGTCGCT 61.311 61.111 0.00 0.00 0.00 4.93
62 63 3.589654 TTTCTGCCTCCCGTCGCTG 62.590 63.158 0.00 0.00 0.00 5.18
64 65 4.803426 CTGCCTCCCGTCGCTGTC 62.803 72.222 0.00 0.00 0.00 3.51
85 86 3.844090 GCAGGTCCGCCTCCTCTC 61.844 72.222 0.00 0.00 44.97 3.20
86 87 3.151022 CAGGTCCGCCTCCTCTCC 61.151 72.222 0.00 0.00 44.97 3.71
87 88 3.673597 AGGTCCGCCTCCTCTCCA 61.674 66.667 0.00 0.00 42.67 3.86
88 89 2.683933 GGTCCGCCTCCTCTCCAA 60.684 66.667 0.00 0.00 0.00 3.53
89 90 2.066999 GGTCCGCCTCCTCTCCAAT 61.067 63.158 0.00 0.00 0.00 3.16
90 91 1.144936 GTCCGCCTCCTCTCCAATG 59.855 63.158 0.00 0.00 0.00 2.82
91 92 2.066393 TCCGCCTCCTCTCCAATGG 61.066 63.158 0.00 0.00 0.00 3.16
92 93 2.203126 CGCCTCCTCTCCAATGGC 60.203 66.667 0.00 0.00 40.14 4.40
93 94 2.194326 GCCTCCTCTCCAATGGCC 59.806 66.667 0.00 0.00 37.81 5.36
94 95 2.922234 CCTCCTCTCCAATGGCCC 59.078 66.667 0.00 0.00 0.00 5.80
95 96 1.695597 CCTCCTCTCCAATGGCCCT 60.696 63.158 0.00 0.00 0.00 5.19
96 97 0.400525 CCTCCTCTCCAATGGCCCTA 60.401 60.000 0.00 0.00 0.00 3.53
97 98 1.511613 CTCCTCTCCAATGGCCCTAA 58.488 55.000 0.00 0.00 0.00 2.69
98 99 1.846439 CTCCTCTCCAATGGCCCTAAA 59.154 52.381 0.00 0.00 0.00 1.85
99 100 1.846439 TCCTCTCCAATGGCCCTAAAG 59.154 52.381 0.00 0.00 0.00 1.85
100 101 1.685148 CTCTCCAATGGCCCTAAAGC 58.315 55.000 0.00 0.00 0.00 3.51
108 109 2.123295 GCCCTAAAGCCATGGGGG 60.123 66.667 15.13 16.01 41.19 5.40
117 118 3.753319 CCATGGGGGCATGGTGGA 61.753 66.667 2.85 0.00 45.28 4.02
118 119 2.610501 CATGGGGGCATGGTGGAT 59.389 61.111 0.00 0.00 0.00 3.41
119 120 1.532316 CATGGGGGCATGGTGGATC 60.532 63.158 0.00 0.00 0.00 3.36
120 121 1.702491 ATGGGGGCATGGTGGATCT 60.702 57.895 0.00 0.00 0.00 2.75
121 122 1.723128 ATGGGGGCATGGTGGATCTC 61.723 60.000 0.00 0.00 0.00 2.75
122 123 2.111878 GGGGCATGGTGGATCTCG 59.888 66.667 0.00 0.00 0.00 4.04
123 124 2.111878 GGGCATGGTGGATCTCGG 59.888 66.667 0.00 0.00 0.00 4.63
124 125 2.592861 GGCATGGTGGATCTCGGC 60.593 66.667 0.00 0.00 0.00 5.54
125 126 2.190313 GCATGGTGGATCTCGGCA 59.810 61.111 0.00 0.00 0.00 5.69
126 127 1.451927 GCATGGTGGATCTCGGCAA 60.452 57.895 0.00 0.00 0.00 4.52
127 128 1.442526 GCATGGTGGATCTCGGCAAG 61.443 60.000 0.00 0.00 0.00 4.01
128 129 0.816825 CATGGTGGATCTCGGCAAGG 60.817 60.000 0.00 0.00 0.00 3.61
129 130 1.987807 ATGGTGGATCTCGGCAAGGG 61.988 60.000 0.00 0.00 0.00 3.95
130 131 2.514824 GTGGATCTCGGCAAGGGC 60.515 66.667 0.00 0.00 40.13 5.19
156 157 1.669265 GGAGGGCTCCGTTTTTAATCG 59.331 52.381 0.00 0.00 40.36 3.34
157 158 2.353323 GAGGGCTCCGTTTTTAATCGT 58.647 47.619 0.00 0.00 0.00 3.73
158 159 2.745821 GAGGGCTCCGTTTTTAATCGTT 59.254 45.455 0.00 0.00 0.00 3.85
159 160 3.151554 AGGGCTCCGTTTTTAATCGTTT 58.848 40.909 0.00 0.00 0.00 3.60
160 161 3.189910 AGGGCTCCGTTTTTAATCGTTTC 59.810 43.478 0.00 0.00 0.00 2.78
161 162 3.189910 GGGCTCCGTTTTTAATCGTTTCT 59.810 43.478 0.00 0.00 0.00 2.52
162 163 4.320714 GGGCTCCGTTTTTAATCGTTTCTT 60.321 41.667 0.00 0.00 0.00 2.52
163 164 4.849926 GGCTCCGTTTTTAATCGTTTCTTC 59.150 41.667 0.00 0.00 0.00 2.87
164 165 5.445845 GCTCCGTTTTTAATCGTTTCTTCA 58.554 37.500 0.00 0.00 0.00 3.02
165 166 5.910723 GCTCCGTTTTTAATCGTTTCTTCAA 59.089 36.000 0.00 0.00 0.00 2.69
166 167 6.581166 GCTCCGTTTTTAATCGTTTCTTCAAT 59.419 34.615 0.00 0.00 0.00 2.57
167 168 7.114388 GCTCCGTTTTTAATCGTTTCTTCAATT 59.886 33.333 0.00 0.00 0.00 2.32
168 169 8.859517 TCCGTTTTTAATCGTTTCTTCAATTT 57.140 26.923 0.00 0.00 0.00 1.82
169 170 9.303537 TCCGTTTTTAATCGTTTCTTCAATTTT 57.696 25.926 0.00 0.00 0.00 1.82
170 171 9.352163 CCGTTTTTAATCGTTTCTTCAATTTTG 57.648 29.630 0.00 0.00 0.00 2.44
171 172 8.868732 CGTTTTTAATCGTTTCTTCAATTTTGC 58.131 29.630 0.00 0.00 0.00 3.68
172 173 9.914923 GTTTTTAATCGTTTCTTCAATTTTGCT 57.085 25.926 0.00 0.00 0.00 3.91
175 176 8.964420 TTAATCGTTTCTTCAATTTTGCTAGG 57.036 30.769 0.00 0.00 0.00 3.02
176 177 5.371115 TCGTTTCTTCAATTTTGCTAGGG 57.629 39.130 0.00 0.00 0.00 3.53
177 178 4.825085 TCGTTTCTTCAATTTTGCTAGGGT 59.175 37.500 0.00 0.00 0.00 4.34
178 179 5.300792 TCGTTTCTTCAATTTTGCTAGGGTT 59.699 36.000 0.00 0.00 0.00 4.11
179 180 5.983118 CGTTTCTTCAATTTTGCTAGGGTTT 59.017 36.000 0.00 0.00 0.00 3.27
180 181 6.074356 CGTTTCTTCAATTTTGCTAGGGTTTG 60.074 38.462 0.00 0.00 0.00 2.93
181 182 6.478512 TTCTTCAATTTTGCTAGGGTTTGT 57.521 33.333 0.00 0.00 0.00 2.83
182 183 5.841810 TCTTCAATTTTGCTAGGGTTTGTG 58.158 37.500 0.00 0.00 0.00 3.33
183 184 5.362430 TCTTCAATTTTGCTAGGGTTTGTGT 59.638 36.000 0.00 0.00 0.00 3.72
184 185 5.195001 TCAATTTTGCTAGGGTTTGTGTC 57.805 39.130 0.00 0.00 0.00 3.67
185 186 4.038642 TCAATTTTGCTAGGGTTTGTGTCC 59.961 41.667 0.00 0.00 0.00 4.02
186 187 3.306472 TTTTGCTAGGGTTTGTGTCCT 57.694 42.857 0.00 0.00 37.18 3.85
187 188 2.270352 TTGCTAGGGTTTGTGTCCTG 57.730 50.000 0.00 0.00 34.75 3.86
188 189 0.250727 TGCTAGGGTTTGTGTCCTGC 60.251 55.000 0.00 0.00 34.75 4.85
189 190 0.036875 GCTAGGGTTTGTGTCCTGCT 59.963 55.000 0.00 0.00 34.75 4.24
190 191 1.946283 GCTAGGGTTTGTGTCCTGCTC 60.946 57.143 0.00 0.00 34.75 4.26
191 192 1.347707 CTAGGGTTTGTGTCCTGCTCA 59.652 52.381 0.00 0.00 34.75 4.26
192 193 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
203 204 3.712020 CTGCTCAGGAAGACGAGAC 57.288 57.895 0.00 0.00 0.00 3.36
204 205 0.179176 CTGCTCAGGAAGACGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
205 206 1.137825 GCTCAGGAAGACGAGACGG 59.862 63.158 0.00 0.00 0.00 4.79
206 207 1.137825 CTCAGGAAGACGAGACGGC 59.862 63.158 0.00 0.00 33.59 5.68
207 208 2.202492 CAGGAAGACGAGACGGCG 60.202 66.667 4.80 4.80 41.28 6.46
208 209 3.441290 AGGAAGACGAGACGGCGG 61.441 66.667 13.24 0.00 41.28 6.13
223 224 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
224 225 2.203126 GGCGGCTCCCTGAAGATG 60.203 66.667 0.00 0.00 0.00 2.90
225 226 2.203126 GCGGCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
226 227 2.735772 GCGGCTCCCTGAAGATGGA 61.736 63.158 0.00 0.00 0.00 3.41
227 228 1.907739 CGGCTCCCTGAAGATGGAA 59.092 57.895 0.00 0.00 0.00 3.53
228 229 0.471617 CGGCTCCCTGAAGATGGAAT 59.528 55.000 0.00 0.00 0.00 3.01
229 230 1.694150 CGGCTCCCTGAAGATGGAATA 59.306 52.381 0.00 0.00 0.00 1.75
230 231 2.104792 CGGCTCCCTGAAGATGGAATAA 59.895 50.000 0.00 0.00 0.00 1.40
231 232 3.433598 CGGCTCCCTGAAGATGGAATAAA 60.434 47.826 0.00 0.00 0.00 1.40
232 233 4.140536 GGCTCCCTGAAGATGGAATAAAG 58.859 47.826 0.00 0.00 0.00 1.85
233 234 4.141390 GGCTCCCTGAAGATGGAATAAAGA 60.141 45.833 0.00 0.00 0.00 2.52
234 235 5.457342 GGCTCCCTGAAGATGGAATAAAGAT 60.457 44.000 0.00 0.00 0.00 2.40
235 236 5.704978 GCTCCCTGAAGATGGAATAAAGATC 59.295 44.000 0.00 0.00 0.00 2.75
236 237 6.465607 GCTCCCTGAAGATGGAATAAAGATCT 60.466 42.308 0.00 0.00 0.00 2.75
237 238 7.457380 TCCCTGAAGATGGAATAAAGATCTT 57.543 36.000 0.88 0.88 38.80 2.40
238 239 7.876371 TCCCTGAAGATGGAATAAAGATCTTT 58.124 34.615 23.53 23.53 36.73 2.52
239 240 7.995488 TCCCTGAAGATGGAATAAAGATCTTTC 59.005 37.037 23.70 10.32 36.73 2.62
240 241 7.230309 CCCTGAAGATGGAATAAAGATCTTTCC 59.770 40.741 23.70 18.93 36.73 3.13
241 242 7.041508 CCTGAAGATGGAATAAAGATCTTTCCG 60.042 40.741 23.70 5.47 41.50 4.30
242 243 6.260936 TGAAGATGGAATAAAGATCTTTCCGC 59.739 38.462 23.70 14.45 41.50 5.54
243 244 5.066593 AGATGGAATAAAGATCTTTCCGCC 58.933 41.667 23.70 20.75 41.50 6.13
244 245 4.503714 TGGAATAAAGATCTTTCCGCCT 57.496 40.909 23.70 2.03 41.50 5.52
245 246 5.623956 TGGAATAAAGATCTTTCCGCCTA 57.376 39.130 23.70 6.27 41.50 3.93
246 247 5.611374 TGGAATAAAGATCTTTCCGCCTAG 58.389 41.667 23.70 0.00 41.50 3.02
247 248 4.452795 GGAATAAAGATCTTTCCGCCTAGC 59.547 45.833 23.70 6.57 34.23 3.42
248 249 2.333688 AAAGATCTTTCCGCCTAGCC 57.666 50.000 15.11 0.00 0.00 3.93
249 250 0.470341 AAGATCTTTCCGCCTAGCCC 59.530 55.000 0.88 0.00 0.00 5.19
250 251 1.071642 GATCTTTCCGCCTAGCCCC 59.928 63.158 0.00 0.00 0.00 5.80
251 252 2.398840 GATCTTTCCGCCTAGCCCCC 62.399 65.000 0.00 0.00 0.00 5.40
252 253 4.547367 CTTTCCGCCTAGCCCCCG 62.547 72.222 0.00 0.00 0.00 5.73
280 281 2.663196 GCCTCTAGCACCGTTGGT 59.337 61.111 0.00 0.00 42.97 3.67
291 292 4.920112 CGTTGGTGGGCGTGTGGA 62.920 66.667 0.00 0.00 0.00 4.02
292 293 2.978010 GTTGGTGGGCGTGTGGAG 60.978 66.667 0.00 0.00 0.00 3.86
293 294 4.947147 TTGGTGGGCGTGTGGAGC 62.947 66.667 0.00 0.00 0.00 4.70
302 303 2.335369 GTGTGGAGCACGACGACT 59.665 61.111 0.00 0.00 38.45 4.18
303 304 1.299926 GTGTGGAGCACGACGACTT 60.300 57.895 0.00 0.00 38.45 3.01
304 305 1.007734 TGTGGAGCACGACGACTTC 60.008 57.895 0.00 0.00 37.14 3.01
305 306 1.733399 GTGGAGCACGACGACTTCC 60.733 63.158 0.00 5.62 0.00 3.46
306 307 2.126031 GGAGCACGACGACTTCCC 60.126 66.667 0.00 0.00 0.00 3.97
307 308 2.504244 GAGCACGACGACTTCCCG 60.504 66.667 0.00 0.00 0.00 5.14
308 309 2.974489 GAGCACGACGACTTCCCGA 61.974 63.158 0.00 0.00 0.00 5.14
309 310 2.804090 GCACGACGACTTCCCGAC 60.804 66.667 0.00 0.00 0.00 4.79
310 311 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
311 312 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
312 313 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
313 314 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
314 315 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
315 316 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
316 317 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
317 318 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
318 319 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
319 320 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
320 321 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
321 322 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
322 323 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
323 324 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
324 325 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
325 326 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
326 327 3.255149 CCCGACTGTCTACTACAACAAGT 59.745 47.826 6.21 0.00 37.74 3.16
327 328 4.261909 CCCGACTGTCTACTACAACAAGTT 60.262 45.833 6.21 0.00 37.74 2.66
328 329 4.680110 CCGACTGTCTACTACAACAAGTTG 59.320 45.833 11.16 11.16 45.58 3.16
337 338 2.404083 CAACAAGTTGTGCCCGACT 58.596 52.632 9.79 0.00 36.86 4.18
338 339 0.307760 CAACAAGTTGTGCCCGACTC 59.692 55.000 9.79 0.00 34.00 3.36
339 340 0.818040 AACAAGTTGTGCCCGACTCC 60.818 55.000 9.79 0.00 34.00 3.85
340 341 2.030562 AAGTTGTGCCCGACTCCG 59.969 61.111 0.00 0.00 34.00 4.63
356 357 3.606662 CGGCGATGGAGGGACGAT 61.607 66.667 0.00 0.00 0.00 3.73
357 358 2.029666 GGCGATGGAGGGACGATG 59.970 66.667 0.00 0.00 0.00 3.84
358 359 2.498941 GGCGATGGAGGGACGATGA 61.499 63.158 0.00 0.00 0.00 2.92
359 360 1.300233 GCGATGGAGGGACGATGAC 60.300 63.158 0.00 0.00 0.00 3.06
360 361 1.008424 CGATGGAGGGACGATGACG 60.008 63.158 0.00 0.00 45.75 4.35
361 362 1.364171 GATGGAGGGACGATGACGG 59.636 63.158 0.00 0.00 44.46 4.79
385 386 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
386 387 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
387 388 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
388 389 1.080501 CTTCGGCTCGCTTCAGTGA 60.081 57.895 0.00 0.00 0.00 3.41
389 390 0.459237 CTTCGGCTCGCTTCAGTGAT 60.459 55.000 0.00 0.00 33.67 3.06
390 391 0.737367 TTCGGCTCGCTTCAGTGATG 60.737 55.000 0.00 0.00 33.67 3.07
391 392 1.153765 CGGCTCGCTTCAGTGATGA 60.154 57.895 10.08 0.68 33.67 2.92
392 393 0.529337 CGGCTCGCTTCAGTGATGAT 60.529 55.000 10.08 0.00 33.67 2.45
393 394 1.269257 CGGCTCGCTTCAGTGATGATA 60.269 52.381 10.08 0.00 33.67 2.15
394 395 2.402305 GGCTCGCTTCAGTGATGATAG 58.598 52.381 10.08 6.88 33.67 2.08
395 396 2.223923 GGCTCGCTTCAGTGATGATAGT 60.224 50.000 10.08 0.00 33.67 2.12
396 397 3.049206 GCTCGCTTCAGTGATGATAGTC 58.951 50.000 10.08 0.52 33.67 2.59
397 398 3.243367 GCTCGCTTCAGTGATGATAGTCT 60.243 47.826 10.08 0.00 33.67 3.24
398 399 4.736168 GCTCGCTTCAGTGATGATAGTCTT 60.736 45.833 10.08 0.00 33.67 3.01
399 400 4.926244 TCGCTTCAGTGATGATAGTCTTC 58.074 43.478 10.08 0.00 0.00 2.87
400 401 3.728221 CGCTTCAGTGATGATAGTCTTCG 59.272 47.826 10.08 0.00 0.00 3.79
401 402 3.489047 GCTTCAGTGATGATAGTCTTCGC 59.511 47.826 10.08 0.00 33.02 4.70
402 403 4.736168 GCTTCAGTGATGATAGTCTTCGCT 60.736 45.833 10.08 3.85 40.56 4.93
403 404 5.506483 GCTTCAGTGATGATAGTCTTCGCTA 60.506 44.000 10.08 0.00 38.72 4.26
404 405 5.681337 TCAGTGATGATAGTCTTCGCTAG 57.319 43.478 8.11 0.00 38.72 3.42
405 406 4.517075 TCAGTGATGATAGTCTTCGCTAGG 59.483 45.833 8.11 0.40 38.72 3.02
406 407 4.277174 CAGTGATGATAGTCTTCGCTAGGT 59.723 45.833 8.11 0.00 38.72 3.08
407 408 4.277174 AGTGATGATAGTCTTCGCTAGGTG 59.723 45.833 7.02 0.00 38.90 4.00
408 409 3.570125 TGATGATAGTCTTCGCTAGGTGG 59.430 47.826 0.00 0.00 0.00 4.61
409 410 3.014304 TGATAGTCTTCGCTAGGTGGT 57.986 47.619 0.00 0.00 0.00 4.16
410 411 2.950309 TGATAGTCTTCGCTAGGTGGTC 59.050 50.000 0.00 0.00 0.00 4.02
411 412 2.803030 TAGTCTTCGCTAGGTGGTCT 57.197 50.000 0.00 0.00 0.00 3.85
412 413 2.803030 AGTCTTCGCTAGGTGGTCTA 57.197 50.000 0.00 0.00 0.00 2.59
413 414 3.300239 AGTCTTCGCTAGGTGGTCTAT 57.700 47.619 0.00 0.00 0.00 1.98
414 415 2.952978 AGTCTTCGCTAGGTGGTCTATG 59.047 50.000 0.00 0.00 0.00 2.23
415 416 2.034812 GTCTTCGCTAGGTGGTCTATGG 59.965 54.545 0.00 0.00 0.00 2.74
416 417 2.092049 TCTTCGCTAGGTGGTCTATGGA 60.092 50.000 0.00 0.00 0.00 3.41
417 418 2.677542 TCGCTAGGTGGTCTATGGAT 57.322 50.000 0.00 0.00 0.00 3.41
418 419 2.515854 TCGCTAGGTGGTCTATGGATC 58.484 52.381 0.00 0.00 0.00 3.36
419 420 2.108425 TCGCTAGGTGGTCTATGGATCT 59.892 50.000 0.00 0.00 0.00 2.75
420 421 2.230025 CGCTAGGTGGTCTATGGATCTG 59.770 54.545 0.00 0.00 0.00 2.90
421 422 2.564947 GCTAGGTGGTCTATGGATCTGG 59.435 54.545 0.00 0.00 0.00 3.86
422 423 3.755483 GCTAGGTGGTCTATGGATCTGGA 60.755 52.174 0.00 0.00 0.00 3.86
423 424 3.645053 AGGTGGTCTATGGATCTGGAT 57.355 47.619 0.00 0.00 0.00 3.41
424 425 3.246301 AGGTGGTCTATGGATCTGGATG 58.754 50.000 0.00 0.00 0.00 3.51
425 426 2.975489 GGTGGTCTATGGATCTGGATGT 59.025 50.000 0.00 0.00 0.00 3.06
426 427 4.140686 AGGTGGTCTATGGATCTGGATGTA 60.141 45.833 0.00 0.00 0.00 2.29
427 428 4.593206 GGTGGTCTATGGATCTGGATGTAA 59.407 45.833 0.00 0.00 0.00 2.41
428 429 5.249393 GGTGGTCTATGGATCTGGATGTAAT 59.751 44.000 0.00 0.00 0.00 1.89
429 430 6.240002 GGTGGTCTATGGATCTGGATGTAATT 60.240 42.308 0.00 0.00 0.00 1.40
430 431 7.227156 GTGGTCTATGGATCTGGATGTAATTT 58.773 38.462 0.00 0.00 0.00 1.82
431 432 7.721399 GTGGTCTATGGATCTGGATGTAATTTT 59.279 37.037 0.00 0.00 0.00 1.82
432 433 8.281531 TGGTCTATGGATCTGGATGTAATTTTT 58.718 33.333 0.00 0.00 0.00 1.94
433 434 9.793259 GGTCTATGGATCTGGATGTAATTTTTA 57.207 33.333 0.00 0.00 0.00 1.52
459 460 6.699575 ATTTCTGGTATTCATTGTACTGCC 57.300 37.500 0.00 0.00 0.00 4.85
460 461 4.835284 TCTGGTATTCATTGTACTGCCA 57.165 40.909 0.00 0.00 0.00 4.92
461 462 5.372343 TCTGGTATTCATTGTACTGCCAT 57.628 39.130 0.00 0.00 0.00 4.40
462 463 5.125356 TCTGGTATTCATTGTACTGCCATG 58.875 41.667 0.00 0.00 0.00 3.66
463 464 4.206375 TGGTATTCATTGTACTGCCATGG 58.794 43.478 7.63 7.63 0.00 3.66
464 465 4.207165 GGTATTCATTGTACTGCCATGGT 58.793 43.478 14.67 0.00 0.00 3.55
465 466 4.644685 GGTATTCATTGTACTGCCATGGTT 59.355 41.667 14.67 0.40 0.00 3.67
466 467 4.724074 ATTCATTGTACTGCCATGGTTG 57.276 40.909 14.67 9.05 0.00 3.77
467 468 3.431673 TCATTGTACTGCCATGGTTGA 57.568 42.857 14.67 1.70 0.00 3.18
468 469 3.760738 TCATTGTACTGCCATGGTTGAA 58.239 40.909 14.67 0.00 0.00 2.69
469 470 3.758023 TCATTGTACTGCCATGGTTGAAG 59.242 43.478 14.67 8.80 0.00 3.02
470 471 3.500448 TTGTACTGCCATGGTTGAAGA 57.500 42.857 14.67 0.00 0.00 2.87
471 472 3.719268 TGTACTGCCATGGTTGAAGAT 57.281 42.857 14.67 0.00 0.00 2.40
472 473 3.346315 TGTACTGCCATGGTTGAAGATG 58.654 45.455 14.67 0.00 0.00 2.90
473 474 2.885135 ACTGCCATGGTTGAAGATGA 57.115 45.000 14.67 0.00 0.00 2.92
474 475 3.159213 ACTGCCATGGTTGAAGATGAA 57.841 42.857 14.67 0.00 0.00 2.57
475 476 3.705051 ACTGCCATGGTTGAAGATGAAT 58.295 40.909 14.67 0.00 0.00 2.57
476 477 4.858850 ACTGCCATGGTTGAAGATGAATA 58.141 39.130 14.67 0.00 0.00 1.75
477 478 4.885907 ACTGCCATGGTTGAAGATGAATAG 59.114 41.667 14.67 0.00 0.00 1.73
478 479 5.114764 TGCCATGGTTGAAGATGAATAGA 57.885 39.130 14.67 0.00 0.00 1.98
479 480 4.883585 TGCCATGGTTGAAGATGAATAGAC 59.116 41.667 14.67 0.00 0.00 2.59
480 481 4.883585 GCCATGGTTGAAGATGAATAGACA 59.116 41.667 14.67 0.00 0.00 3.41
481 482 5.357878 GCCATGGTTGAAGATGAATAGACAA 59.642 40.000 14.67 0.00 0.00 3.18
482 483 6.127647 GCCATGGTTGAAGATGAATAGACAAA 60.128 38.462 14.67 0.00 0.00 2.83
483 484 7.577426 GCCATGGTTGAAGATGAATAGACAAAA 60.577 37.037 14.67 0.00 0.00 2.44
484 485 8.306038 CCATGGTTGAAGATGAATAGACAAAAA 58.694 33.333 2.57 0.00 0.00 1.94
532 533 3.723681 TCCCTAGGATCAAAGAATGCCAT 59.276 43.478 11.48 0.00 0.00 4.40
609 610 1.705873 ACCGGCCTTATCTTCGAGAT 58.294 50.000 0.00 3.44 38.70 2.75
616 617 2.103094 CCTTATCTTCGAGATGCCACCA 59.897 50.000 7.40 0.00 35.37 4.17
628 629 3.569210 CCACCAGAGCCCACACCA 61.569 66.667 0.00 0.00 0.00 4.17
771 781 4.148825 CTCCCGCCACCTTCCTCG 62.149 72.222 0.00 0.00 0.00 4.63
792 803 0.037232 CGATCCCCGGGCTTATCTTC 60.037 60.000 17.73 2.24 33.91 2.87
913 924 1.729838 GGCACACTCGTCGACAGAC 60.730 63.158 17.16 2.03 43.72 3.51
962 974 1.164662 CGAAGGATCCGGAGCTCGTA 61.165 60.000 20.86 0.00 37.11 3.43
1238 1250 4.868116 GGTGGTGGTGGTGCACGT 62.868 66.667 11.45 0.00 34.83 4.49
1440 1452 1.645402 CGGGGGAGATTGGTGGGAAT 61.645 60.000 0.00 0.00 0.00 3.01
1480 1492 0.033796 CCGGTGGGGTACTAGTGAGA 60.034 60.000 5.39 0.00 0.00 3.27
1525 1537 4.406326 TCGTCTAGTCTGAGTCTATCTGGT 59.594 45.833 0.00 0.00 0.00 4.00
1526 1538 5.597594 TCGTCTAGTCTGAGTCTATCTGGTA 59.402 44.000 0.00 0.00 0.00 3.25
1527 1539 5.693104 CGTCTAGTCTGAGTCTATCTGGTAC 59.307 48.000 0.00 0.00 0.00 3.34
1553 1565 3.073798 TCTGGTTACTCCTTGCCATTTGA 59.926 43.478 0.00 0.00 37.07 2.69
1604 1616 2.626840 GTGTTCTGCTCCTTCCTGATC 58.373 52.381 0.00 0.00 0.00 2.92
1605 1617 1.556911 TGTTCTGCTCCTTCCTGATCC 59.443 52.381 0.00 0.00 0.00 3.36
1672 1722 5.898174 TGGAATCAAATGTGAATGCAGATC 58.102 37.500 0.00 0.00 37.30 2.75
1727 1778 5.659079 TGTTTACTTGGTTGGTTCCTTGATT 59.341 36.000 0.00 0.00 0.00 2.57
1753 1804 2.569059 TGGATTAGAGCAGAGCAATGC 58.431 47.619 0.00 0.00 46.88 3.56
1822 1874 5.606348 TTTGTATTCCAAAGCAACCAACT 57.394 34.783 0.00 0.00 38.12 3.16
1879 1931 3.181476 GCACAGACACACCCAAAAGAAAT 60.181 43.478 0.00 0.00 0.00 2.17
1906 1958 9.626045 GAAAGAGAAACAACAAGAGAAAAGAAA 57.374 29.630 0.00 0.00 0.00 2.52
2447 2499 2.513897 GGCCGGGAACTCCATTCG 60.514 66.667 2.18 0.00 38.31 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 9.785982 GCAGAAACCCTATCTTTATCTTTATCT 57.214 33.333 0.00 0.00 0.00 1.98
25 26 9.004717 GGCAGAAACCCTATCTTTATCTTTATC 57.995 37.037 0.00 0.00 0.00 1.75
26 27 8.728098 AGGCAGAAACCCTATCTTTATCTTTAT 58.272 33.333 0.00 0.00 0.00 1.40
27 28 8.102484 AGGCAGAAACCCTATCTTTATCTTTA 57.898 34.615 0.00 0.00 0.00 1.85
28 29 6.974795 AGGCAGAAACCCTATCTTTATCTTT 58.025 36.000 0.00 0.00 0.00 2.52
29 30 6.409810 GGAGGCAGAAACCCTATCTTTATCTT 60.410 42.308 0.00 0.00 31.41 2.40
30 31 5.072464 GGAGGCAGAAACCCTATCTTTATCT 59.928 44.000 0.00 0.00 31.41 1.98
31 32 5.309638 GGAGGCAGAAACCCTATCTTTATC 58.690 45.833 0.00 0.00 31.41 1.75
32 33 4.104897 GGGAGGCAGAAACCCTATCTTTAT 59.895 45.833 0.00 0.00 40.39 1.40
33 34 3.458487 GGGAGGCAGAAACCCTATCTTTA 59.542 47.826 0.00 0.00 40.39 1.85
34 35 2.242452 GGGAGGCAGAAACCCTATCTTT 59.758 50.000 0.00 0.00 40.39 2.52
35 36 1.847088 GGGAGGCAGAAACCCTATCTT 59.153 52.381 0.00 0.00 40.39 2.40
36 37 1.512735 GGGAGGCAGAAACCCTATCT 58.487 55.000 0.00 0.00 40.39 1.98
37 38 0.106894 CGGGAGGCAGAAACCCTATC 59.893 60.000 0.00 0.00 41.28 2.08
38 39 0.620700 ACGGGAGGCAGAAACCCTAT 60.621 55.000 0.00 0.00 41.28 2.57
39 40 1.229400 ACGGGAGGCAGAAACCCTA 60.229 57.895 0.00 0.00 41.28 3.53
40 41 2.529389 ACGGGAGGCAGAAACCCT 60.529 61.111 0.00 0.00 41.28 4.34
41 42 2.046217 GACGGGAGGCAGAAACCC 60.046 66.667 0.00 0.00 38.26 4.11
42 43 2.434359 CGACGGGAGGCAGAAACC 60.434 66.667 0.00 0.00 38.29 3.27
43 44 3.119096 GCGACGGGAGGCAGAAAC 61.119 66.667 0.00 0.00 38.29 2.78
44 45 3.311110 AGCGACGGGAGGCAGAAA 61.311 61.111 0.00 0.00 38.29 2.52
45 46 4.069232 CAGCGACGGGAGGCAGAA 62.069 66.667 0.00 0.00 38.29 3.02
47 48 4.803426 GACAGCGACGGGAGGCAG 62.803 72.222 0.00 0.00 38.29 4.85
71 72 2.066999 ATTGGAGAGGAGGCGGACC 61.067 63.158 0.00 0.00 0.00 4.46
72 73 1.144936 CATTGGAGAGGAGGCGGAC 59.855 63.158 0.00 0.00 0.00 4.79
73 74 2.066393 CCATTGGAGAGGAGGCGGA 61.066 63.158 0.00 0.00 0.00 5.54
74 75 2.507944 CCATTGGAGAGGAGGCGG 59.492 66.667 0.00 0.00 0.00 6.13
75 76 2.203126 GCCATTGGAGAGGAGGCG 60.203 66.667 6.95 0.00 35.42 5.52
76 77 2.194326 GGCCATTGGAGAGGAGGC 59.806 66.667 6.95 0.00 44.48 4.70
77 78 0.400525 TAGGGCCATTGGAGAGGAGG 60.401 60.000 6.18 0.00 0.00 4.30
78 79 1.511613 TTAGGGCCATTGGAGAGGAG 58.488 55.000 6.18 0.00 0.00 3.69
79 80 1.846439 CTTTAGGGCCATTGGAGAGGA 59.154 52.381 6.18 0.00 0.00 3.71
80 81 1.752084 GCTTTAGGGCCATTGGAGAGG 60.752 57.143 6.18 0.00 0.00 3.69
81 82 1.685148 GCTTTAGGGCCATTGGAGAG 58.315 55.000 6.18 0.00 0.00 3.20
82 83 3.903208 GCTTTAGGGCCATTGGAGA 57.097 52.632 6.18 0.00 0.00 3.71
91 92 2.123295 CCCCCATGGCTTTAGGGC 60.123 66.667 6.09 0.00 41.42 5.19
101 102 1.532316 GATCCACCATGCCCCCATG 60.532 63.158 0.00 0.00 46.70 3.66
102 103 1.702491 AGATCCACCATGCCCCCAT 60.702 57.895 0.00 0.00 0.00 4.00
103 104 2.287117 AGATCCACCATGCCCCCA 60.287 61.111 0.00 0.00 0.00 4.96
104 105 2.517919 GAGATCCACCATGCCCCC 59.482 66.667 0.00 0.00 0.00 5.40
105 106 2.111878 CGAGATCCACCATGCCCC 59.888 66.667 0.00 0.00 0.00 5.80
106 107 2.111878 CCGAGATCCACCATGCCC 59.888 66.667 0.00 0.00 0.00 5.36
107 108 2.592861 GCCGAGATCCACCATGCC 60.593 66.667 0.00 0.00 0.00 4.40
108 109 1.442526 CTTGCCGAGATCCACCATGC 61.443 60.000 0.00 0.00 0.00 4.06
109 110 0.816825 CCTTGCCGAGATCCACCATG 60.817 60.000 0.00 0.00 0.00 3.66
110 111 1.528824 CCTTGCCGAGATCCACCAT 59.471 57.895 0.00 0.00 0.00 3.55
111 112 2.669133 CCCTTGCCGAGATCCACCA 61.669 63.158 0.00 0.00 0.00 4.17
112 113 2.190578 CCCTTGCCGAGATCCACC 59.809 66.667 0.00 0.00 0.00 4.61
113 114 2.514824 GCCCTTGCCGAGATCCAC 60.515 66.667 0.00 0.00 0.00 4.02
135 136 2.022195 GATTAAAAACGGAGCCCTCCC 58.978 52.381 8.68 0.00 46.96 4.30
136 137 1.669265 CGATTAAAAACGGAGCCCTCC 59.331 52.381 4.19 4.19 46.18 4.30
137 138 2.353323 ACGATTAAAAACGGAGCCCTC 58.647 47.619 0.00 0.00 0.00 4.30
138 139 2.484742 ACGATTAAAAACGGAGCCCT 57.515 45.000 0.00 0.00 0.00 5.19
139 140 3.189910 AGAAACGATTAAAAACGGAGCCC 59.810 43.478 0.00 0.00 0.00 5.19
140 141 4.414999 AGAAACGATTAAAAACGGAGCC 57.585 40.909 0.00 0.00 0.00 4.70
141 142 5.445845 TGAAGAAACGATTAAAAACGGAGC 58.554 37.500 0.00 0.00 0.00 4.70
142 143 8.502161 AATTGAAGAAACGATTAAAAACGGAG 57.498 30.769 0.00 0.00 0.00 4.63
143 144 8.859517 AAATTGAAGAAACGATTAAAAACGGA 57.140 26.923 0.00 0.00 0.00 4.69
144 145 9.352163 CAAAATTGAAGAAACGATTAAAAACGG 57.648 29.630 0.00 0.00 0.00 4.44
145 146 8.868732 GCAAAATTGAAGAAACGATTAAAAACG 58.131 29.630 0.00 0.00 0.00 3.60
146 147 9.914923 AGCAAAATTGAAGAAACGATTAAAAAC 57.085 25.926 0.00 0.00 0.00 2.43
149 150 9.405587 CCTAGCAAAATTGAAGAAACGATTAAA 57.594 29.630 0.00 0.00 0.00 1.52
150 151 8.026607 CCCTAGCAAAATTGAAGAAACGATTAA 58.973 33.333 0.00 0.00 0.00 1.40
151 152 7.175990 ACCCTAGCAAAATTGAAGAAACGATTA 59.824 33.333 0.00 0.00 0.00 1.75
152 153 6.015434 ACCCTAGCAAAATTGAAGAAACGATT 60.015 34.615 0.00 0.00 0.00 3.34
153 154 5.476945 ACCCTAGCAAAATTGAAGAAACGAT 59.523 36.000 0.00 0.00 0.00 3.73
154 155 4.825085 ACCCTAGCAAAATTGAAGAAACGA 59.175 37.500 0.00 0.00 0.00 3.85
155 156 5.121221 ACCCTAGCAAAATTGAAGAAACG 57.879 39.130 0.00 0.00 0.00 3.60
156 157 6.761242 ACAAACCCTAGCAAAATTGAAGAAAC 59.239 34.615 0.00 0.00 0.00 2.78
157 158 6.760770 CACAAACCCTAGCAAAATTGAAGAAA 59.239 34.615 0.00 0.00 0.00 2.52
158 159 6.127196 ACACAAACCCTAGCAAAATTGAAGAA 60.127 34.615 0.00 0.00 0.00 2.52
159 160 5.362430 ACACAAACCCTAGCAAAATTGAAGA 59.638 36.000 0.00 0.00 0.00 2.87
160 161 5.600696 ACACAAACCCTAGCAAAATTGAAG 58.399 37.500 0.00 0.00 0.00 3.02
161 162 5.452636 GGACACAAACCCTAGCAAAATTGAA 60.453 40.000 0.00 0.00 0.00 2.69
162 163 4.038642 GGACACAAACCCTAGCAAAATTGA 59.961 41.667 0.00 0.00 0.00 2.57
163 164 4.039124 AGGACACAAACCCTAGCAAAATTG 59.961 41.667 0.00 0.00 0.00 2.32
164 165 4.039124 CAGGACACAAACCCTAGCAAAATT 59.961 41.667 0.00 0.00 0.00 1.82
165 166 3.573967 CAGGACACAAACCCTAGCAAAAT 59.426 43.478 0.00 0.00 0.00 1.82
166 167 2.955660 CAGGACACAAACCCTAGCAAAA 59.044 45.455 0.00 0.00 0.00 2.44
167 168 2.582052 CAGGACACAAACCCTAGCAAA 58.418 47.619 0.00 0.00 0.00 3.68
168 169 1.817740 GCAGGACACAAACCCTAGCAA 60.818 52.381 0.00 0.00 31.50 3.91
169 170 0.250727 GCAGGACACAAACCCTAGCA 60.251 55.000 0.00 0.00 31.50 3.49
170 171 0.036875 AGCAGGACACAAACCCTAGC 59.963 55.000 0.00 0.00 0.00 3.42
171 172 1.347707 TGAGCAGGACACAAACCCTAG 59.652 52.381 0.00 0.00 0.00 3.02
172 173 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
173 174 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
174 175 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
185 186 0.179176 CGTCTCGTCTTCCTGAGCAG 60.179 60.000 0.00 0.00 32.20 4.24
186 187 1.587043 CCGTCTCGTCTTCCTGAGCA 61.587 60.000 0.00 0.00 32.20 4.26
187 188 1.137825 CCGTCTCGTCTTCCTGAGC 59.862 63.158 0.00 0.00 32.20 4.26
188 189 1.137825 GCCGTCTCGTCTTCCTGAG 59.862 63.158 0.00 0.00 0.00 3.35
189 190 2.687805 CGCCGTCTCGTCTTCCTGA 61.688 63.158 0.00 0.00 0.00 3.86
190 191 2.202492 CGCCGTCTCGTCTTCCTG 60.202 66.667 0.00 0.00 0.00 3.86
191 192 3.441290 CCGCCGTCTCGTCTTCCT 61.441 66.667 0.00 0.00 0.00 3.36
206 207 3.854669 ATCTTCAGGGAGCCGCCG 61.855 66.667 0.00 0.00 37.63 6.46
207 208 2.203126 CATCTTCAGGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
208 209 2.203126 CCATCTTCAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
209 210 0.471617 ATTCCATCTTCAGGGAGCCG 59.528 55.000 0.00 0.00 34.02 5.52
210 211 3.864789 TTATTCCATCTTCAGGGAGCC 57.135 47.619 0.00 0.00 34.02 4.70
211 212 5.041191 TCTTTATTCCATCTTCAGGGAGC 57.959 43.478 0.00 0.00 34.02 4.70
212 213 7.077050 AGATCTTTATTCCATCTTCAGGGAG 57.923 40.000 0.00 0.00 34.02 4.30
213 214 7.457380 AAGATCTTTATTCCATCTTCAGGGA 57.543 36.000 0.88 0.00 32.44 4.20
214 215 7.230309 GGAAAGATCTTTATTCCATCTTCAGGG 59.770 40.741 20.51 0.00 41.80 4.45
215 216 7.041508 CGGAAAGATCTTTATTCCATCTTCAGG 60.042 40.741 20.51 0.10 42.20 3.86
216 217 7.519649 GCGGAAAGATCTTTATTCCATCTTCAG 60.520 40.741 20.51 6.48 42.20 3.02
217 218 6.260936 GCGGAAAGATCTTTATTCCATCTTCA 59.739 38.462 20.51 0.00 42.20 3.02
218 219 6.293680 GGCGGAAAGATCTTTATTCCATCTTC 60.294 42.308 20.51 4.45 42.20 2.87
219 220 5.532779 GGCGGAAAGATCTTTATTCCATCTT 59.467 40.000 20.51 0.00 42.20 2.40
220 221 5.066593 GGCGGAAAGATCTTTATTCCATCT 58.933 41.667 20.51 0.00 42.20 2.90
221 222 5.066593 AGGCGGAAAGATCTTTATTCCATC 58.933 41.667 20.51 11.91 42.20 3.51
222 223 5.053978 AGGCGGAAAGATCTTTATTCCAT 57.946 39.130 20.51 5.06 42.20 3.41
223 224 4.503714 AGGCGGAAAGATCTTTATTCCA 57.496 40.909 20.51 0.00 42.20 3.53
224 225 4.452795 GCTAGGCGGAAAGATCTTTATTCC 59.547 45.833 20.51 18.78 39.38 3.01
225 226 4.452795 GGCTAGGCGGAAAGATCTTTATTC 59.547 45.833 20.51 8.77 32.11 1.75
226 227 4.390264 GGCTAGGCGGAAAGATCTTTATT 58.610 43.478 20.51 0.00 32.11 1.40
227 228 3.244596 GGGCTAGGCGGAAAGATCTTTAT 60.245 47.826 20.51 0.00 32.11 1.40
228 229 2.104281 GGGCTAGGCGGAAAGATCTTTA 59.896 50.000 20.51 3.43 32.11 1.85
229 230 1.134068 GGGCTAGGCGGAAAGATCTTT 60.134 52.381 20.60 20.60 35.14 2.52
230 231 0.470341 GGGCTAGGCGGAAAGATCTT 59.530 55.000 10.58 0.88 0.00 2.40
231 232 1.411651 GGGGCTAGGCGGAAAGATCT 61.412 60.000 10.58 0.00 0.00 2.75
232 233 1.071642 GGGGCTAGGCGGAAAGATC 59.928 63.158 10.58 0.00 0.00 2.75
233 234 2.452937 GGGGGCTAGGCGGAAAGAT 61.453 63.158 10.58 0.00 0.00 2.40
234 235 3.087906 GGGGGCTAGGCGGAAAGA 61.088 66.667 10.58 0.00 0.00 2.52
235 236 4.547367 CGGGGGCTAGGCGGAAAG 62.547 72.222 10.58 0.00 0.00 2.62
263 264 2.663196 ACCAACGGTGCTAGAGGC 59.337 61.111 0.00 0.00 42.22 4.70
274 275 4.920112 TCCACACGCCCACCAACG 62.920 66.667 0.00 0.00 0.00 4.10
275 276 2.978010 CTCCACACGCCCACCAAC 60.978 66.667 0.00 0.00 0.00 3.77
276 277 4.947147 GCTCCACACGCCCACCAA 62.947 66.667 0.00 0.00 0.00 3.67
285 286 1.276145 GAAGTCGTCGTGCTCCACAC 61.276 60.000 0.00 0.00 46.45 3.82
286 287 1.007734 GAAGTCGTCGTGCTCCACA 60.008 57.895 0.00 0.00 33.40 4.17
287 288 1.733399 GGAAGTCGTCGTGCTCCAC 60.733 63.158 0.00 0.00 0.00 4.02
288 289 2.649034 GGAAGTCGTCGTGCTCCA 59.351 61.111 0.00 0.00 0.00 3.86
289 290 2.126031 GGGAAGTCGTCGTGCTCC 60.126 66.667 0.00 0.00 0.00 4.70
290 291 2.504244 CGGGAAGTCGTCGTGCTC 60.504 66.667 0.00 0.00 0.00 4.26
291 292 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
292 293 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
293 294 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
294 295 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
295 296 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
296 297 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
297 298 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
298 299 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
299 300 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
300 301 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
301 302 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
302 303 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
303 304 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
304 305 3.255149 ACTTGTTGTAGTAGACAGTCGGG 59.745 47.826 0.00 0.00 39.88 5.14
305 306 4.500603 ACTTGTTGTAGTAGACAGTCGG 57.499 45.455 0.00 0.00 39.88 4.79
306 307 5.173312 CACAACTTGTTGTAGTAGACAGTCG 59.827 44.000 17.26 0.00 39.88 4.18
307 308 5.050972 GCACAACTTGTTGTAGTAGACAGTC 60.051 44.000 17.26 0.00 39.88 3.51
308 309 4.809426 GCACAACTTGTTGTAGTAGACAGT 59.191 41.667 17.26 0.00 39.88 3.55
309 310 4.211374 GGCACAACTTGTTGTAGTAGACAG 59.789 45.833 17.26 5.63 39.88 3.51
310 311 4.124238 GGCACAACTTGTTGTAGTAGACA 58.876 43.478 17.26 0.00 35.78 3.41
311 312 3.497262 GGGCACAACTTGTTGTAGTAGAC 59.503 47.826 17.26 8.51 33.17 2.59
312 313 3.735591 GGGCACAACTTGTTGTAGTAGA 58.264 45.455 17.26 0.00 33.17 2.59
313 314 2.478894 CGGGCACAACTTGTTGTAGTAG 59.521 50.000 17.26 7.80 33.17 2.57
314 315 2.102757 TCGGGCACAACTTGTTGTAGTA 59.897 45.455 17.26 1.74 33.17 1.82
315 316 1.134340 TCGGGCACAACTTGTTGTAGT 60.134 47.619 17.26 0.00 33.17 2.73
316 317 1.263217 GTCGGGCACAACTTGTTGTAG 59.737 52.381 17.26 12.96 33.17 2.74
317 318 1.134340 AGTCGGGCACAACTTGTTGTA 60.134 47.619 17.26 1.01 33.17 2.41
318 319 0.393808 AGTCGGGCACAACTTGTTGT 60.394 50.000 12.73 12.73 35.14 3.32
319 320 0.307760 GAGTCGGGCACAACTTGTTG 59.692 55.000 11.44 11.44 0.00 3.33
320 321 0.818040 GGAGTCGGGCACAACTTGTT 60.818 55.000 0.00 0.00 0.00 2.83
321 322 1.227853 GGAGTCGGGCACAACTTGT 60.228 57.895 0.00 0.00 0.00 3.16
322 323 2.317609 CGGAGTCGGGCACAACTTG 61.318 63.158 0.00 0.00 0.00 3.16
323 324 2.030562 CGGAGTCGGGCACAACTT 59.969 61.111 0.00 0.00 0.00 2.66
339 340 3.606662 ATCGTCCCTCCATCGCCG 61.607 66.667 0.00 0.00 0.00 6.46
340 341 2.029666 CATCGTCCCTCCATCGCC 59.970 66.667 0.00 0.00 0.00 5.54
341 342 1.300233 GTCATCGTCCCTCCATCGC 60.300 63.158 0.00 0.00 0.00 4.58
342 343 1.008424 CGTCATCGTCCCTCCATCG 60.008 63.158 0.00 0.00 0.00 3.84
343 344 1.364171 CCGTCATCGTCCCTCCATC 59.636 63.158 0.00 0.00 35.01 3.51
344 345 2.797278 GCCGTCATCGTCCCTCCAT 61.797 63.158 0.00 0.00 35.01 3.41
345 346 3.458163 GCCGTCATCGTCCCTCCA 61.458 66.667 0.00 0.00 35.01 3.86
346 347 4.570663 CGCCGTCATCGTCCCTCC 62.571 72.222 0.00 0.00 35.01 4.30
347 348 4.570663 CCGCCGTCATCGTCCCTC 62.571 72.222 0.00 0.00 35.01 4.30
370 371 0.459237 ATCACTGAAGCGAGCCGAAG 60.459 55.000 0.00 0.00 0.00 3.79
371 372 0.737367 CATCACTGAAGCGAGCCGAA 60.737 55.000 0.00 0.00 0.00 4.30
372 373 1.153765 CATCACTGAAGCGAGCCGA 60.154 57.895 0.00 0.00 0.00 5.54
373 374 0.529337 ATCATCACTGAAGCGAGCCG 60.529 55.000 0.00 0.00 34.37 5.52
374 375 2.223923 ACTATCATCACTGAAGCGAGCC 60.224 50.000 0.00 0.00 34.37 4.70
375 376 3.049206 GACTATCATCACTGAAGCGAGC 58.951 50.000 0.00 0.00 34.37 5.03
376 377 4.566545 AGACTATCATCACTGAAGCGAG 57.433 45.455 0.00 0.00 34.37 5.03
377 378 4.496507 CGAAGACTATCATCACTGAAGCGA 60.497 45.833 0.00 0.00 34.37 4.93
378 379 3.728221 CGAAGACTATCATCACTGAAGCG 59.272 47.826 0.00 0.00 34.37 4.68
379 380 3.489047 GCGAAGACTATCATCACTGAAGC 59.511 47.826 0.00 0.00 34.37 3.86
380 381 4.930963 AGCGAAGACTATCATCACTGAAG 58.069 43.478 0.00 0.00 34.37 3.02
381 382 4.991153 AGCGAAGACTATCATCACTGAA 57.009 40.909 0.00 0.00 34.37 3.02
382 383 4.517075 CCTAGCGAAGACTATCATCACTGA 59.483 45.833 0.00 0.00 35.41 3.41
383 384 4.277174 ACCTAGCGAAGACTATCATCACTG 59.723 45.833 0.00 0.00 0.00 3.66
384 385 4.277174 CACCTAGCGAAGACTATCATCACT 59.723 45.833 0.00 0.00 0.00 3.41
385 386 4.541779 CACCTAGCGAAGACTATCATCAC 58.458 47.826 0.00 0.00 0.00 3.06
386 387 3.570125 CCACCTAGCGAAGACTATCATCA 59.430 47.826 0.00 0.00 0.00 3.07
387 388 3.570550 ACCACCTAGCGAAGACTATCATC 59.429 47.826 0.00 0.00 0.00 2.92
388 389 3.567397 ACCACCTAGCGAAGACTATCAT 58.433 45.455 0.00 0.00 0.00 2.45
389 390 2.950309 GACCACCTAGCGAAGACTATCA 59.050 50.000 0.00 0.00 0.00 2.15
390 391 3.215975 AGACCACCTAGCGAAGACTATC 58.784 50.000 0.00 0.00 0.00 2.08
391 392 3.300239 AGACCACCTAGCGAAGACTAT 57.700 47.619 0.00 0.00 0.00 2.12
392 393 2.803030 AGACCACCTAGCGAAGACTA 57.197 50.000 0.00 0.00 0.00 2.59
393 394 2.803030 TAGACCACCTAGCGAAGACT 57.197 50.000 0.00 0.00 0.00 3.24
394 395 2.034812 CCATAGACCACCTAGCGAAGAC 59.965 54.545 0.00 0.00 0.00 3.01
395 396 2.092049 TCCATAGACCACCTAGCGAAGA 60.092 50.000 0.00 0.00 0.00 2.87
396 397 2.307768 TCCATAGACCACCTAGCGAAG 58.692 52.381 0.00 0.00 0.00 3.79
397 398 2.447408 TCCATAGACCACCTAGCGAA 57.553 50.000 0.00 0.00 0.00 4.70
398 399 2.108425 AGATCCATAGACCACCTAGCGA 59.892 50.000 0.00 0.00 0.00 4.93
399 400 2.230025 CAGATCCATAGACCACCTAGCG 59.770 54.545 0.00 0.00 0.00 4.26
400 401 2.564947 CCAGATCCATAGACCACCTAGC 59.435 54.545 0.00 0.00 0.00 3.42
401 402 4.119556 TCCAGATCCATAGACCACCTAG 57.880 50.000 0.00 0.00 0.00 3.02
402 403 4.140686 ACATCCAGATCCATAGACCACCTA 60.141 45.833 0.00 0.00 0.00 3.08
403 404 3.246301 CATCCAGATCCATAGACCACCT 58.754 50.000 0.00 0.00 0.00 4.00
404 405 2.975489 ACATCCAGATCCATAGACCACC 59.025 50.000 0.00 0.00 0.00 4.61
405 406 5.808366 TTACATCCAGATCCATAGACCAC 57.192 43.478 0.00 0.00 0.00 4.16
406 407 7.392766 AAATTACATCCAGATCCATAGACCA 57.607 36.000 0.00 0.00 0.00 4.02
407 408 8.697507 AAAAATTACATCCAGATCCATAGACC 57.302 34.615 0.00 0.00 0.00 3.85
433 434 8.850156 GGCAGTACAATGAATACCAGAAATAAT 58.150 33.333 0.00 0.00 0.00 1.28
434 435 7.831690 TGGCAGTACAATGAATACCAGAAATAA 59.168 33.333 0.00 0.00 0.00 1.40
435 436 7.342581 TGGCAGTACAATGAATACCAGAAATA 58.657 34.615 0.00 0.00 0.00 1.40
436 437 6.186957 TGGCAGTACAATGAATACCAGAAAT 58.813 36.000 0.00 0.00 0.00 2.17
437 438 5.565509 TGGCAGTACAATGAATACCAGAAA 58.434 37.500 0.00 0.00 0.00 2.52
438 439 5.172687 TGGCAGTACAATGAATACCAGAA 57.827 39.130 0.00 0.00 0.00 3.02
439 440 4.835284 TGGCAGTACAATGAATACCAGA 57.165 40.909 0.00 0.00 0.00 3.86
440 441 4.276678 CCATGGCAGTACAATGAATACCAG 59.723 45.833 0.00 0.00 0.00 4.00
441 442 4.206375 CCATGGCAGTACAATGAATACCA 58.794 43.478 0.00 0.00 0.00 3.25
442 443 4.207165 ACCATGGCAGTACAATGAATACC 58.793 43.478 13.04 0.00 0.00 2.73
443 444 5.356751 TCAACCATGGCAGTACAATGAATAC 59.643 40.000 13.04 0.00 0.00 1.89
444 445 5.504853 TCAACCATGGCAGTACAATGAATA 58.495 37.500 13.04 0.00 0.00 1.75
445 446 4.343231 TCAACCATGGCAGTACAATGAAT 58.657 39.130 13.04 0.00 0.00 2.57
446 447 3.760738 TCAACCATGGCAGTACAATGAA 58.239 40.909 13.04 0.00 0.00 2.57
447 448 3.431673 TCAACCATGGCAGTACAATGA 57.568 42.857 13.04 1.04 0.00 2.57
448 449 3.758023 TCTTCAACCATGGCAGTACAATG 59.242 43.478 13.04 0.00 0.00 2.82
449 450 4.032960 TCTTCAACCATGGCAGTACAAT 57.967 40.909 13.04 0.00 0.00 2.71
450 451 3.500448 TCTTCAACCATGGCAGTACAA 57.500 42.857 13.04 0.00 0.00 2.41
451 452 3.008923 TCATCTTCAACCATGGCAGTACA 59.991 43.478 13.04 0.00 0.00 2.90
452 453 3.609853 TCATCTTCAACCATGGCAGTAC 58.390 45.455 13.04 0.00 0.00 2.73
453 454 3.998913 TCATCTTCAACCATGGCAGTA 57.001 42.857 13.04 0.00 0.00 2.74
454 455 2.885135 TCATCTTCAACCATGGCAGT 57.115 45.000 13.04 0.00 0.00 4.40
455 456 5.008415 GTCTATTCATCTTCAACCATGGCAG 59.992 44.000 13.04 4.42 0.00 4.85
456 457 4.883585 GTCTATTCATCTTCAACCATGGCA 59.116 41.667 13.04 0.00 0.00 4.92
457 458 4.883585 TGTCTATTCATCTTCAACCATGGC 59.116 41.667 13.04 0.00 0.00 4.40
458 459 7.395190 TTTGTCTATTCATCTTCAACCATGG 57.605 36.000 11.19 11.19 0.00 3.66
506 507 5.600069 GGCATTCTTTGATCCTAGGGATTTT 59.400 40.000 9.46 0.00 43.27 1.82
517 518 4.038402 CAGGGGTTATGGCATTCTTTGATC 59.962 45.833 4.78 0.00 0.00 2.92
532 533 1.493871 TCCAACGGTTTTCAGGGGTTA 59.506 47.619 0.00 0.00 0.00 2.85
609 610 4.269523 GTGTGGGCTCTGGTGGCA 62.270 66.667 0.00 0.00 0.00 4.92
616 617 4.320456 CGCTGTGGTGTGGGCTCT 62.320 66.667 0.00 0.00 0.00 4.09
643 644 2.348998 GCCTGGTGTGCTGCTACT 59.651 61.111 0.00 0.00 0.00 2.57
771 781 1.186267 AGATAAGCCCGGGGATCGAC 61.186 60.000 25.28 3.55 42.43 4.20
913 924 1.248785 TGTCCCTCTCTTCCGGTTCG 61.249 60.000 0.00 0.00 0.00 3.95
1238 1250 3.367743 CGTCGTCTCCGGTCCCAA 61.368 66.667 0.00 0.00 33.95 4.12
1440 1452 1.153647 CTATTGCACGGCCACGAGA 60.154 57.895 2.24 0.00 44.60 4.04
1480 1492 3.199508 AGCAATTATGGAGCTCACACTCT 59.800 43.478 17.19 0.00 36.87 3.24
1504 1516 6.823497 AGTACCAGATAGACTCAGACTAGAC 58.177 44.000 0.00 0.00 0.00 2.59
1525 1537 5.027460 TGGCAAGGAGTAACCAGAATAGTA 58.973 41.667 0.00 0.00 42.04 1.82
1526 1538 3.844211 TGGCAAGGAGTAACCAGAATAGT 59.156 43.478 0.00 0.00 42.04 2.12
1527 1539 4.487714 TGGCAAGGAGTAACCAGAATAG 57.512 45.455 0.00 0.00 42.04 1.73
1553 1565 6.649141 GCCCGTCTTTATGGAAAAAGAAAAAT 59.351 34.615 0.89 0.00 44.75 1.82
1574 1586 3.777925 CAGAACACGAAGCGCCCG 61.778 66.667 16.67 16.67 0.00 6.13
1604 1616 1.667724 CTTTGCAATAGCTGTCCTCGG 59.332 52.381 0.00 0.00 42.74 4.63
1605 1617 2.350522 ACTTTGCAATAGCTGTCCTCG 58.649 47.619 0.00 0.00 42.74 4.63
1638 1688 5.996513 CACATTTGATTCCATGGAAACCAAA 59.003 36.000 35.14 35.14 36.95 3.28
1672 1722 7.930865 TCCAGTAAAAGATTTTCCCACAATTTG 59.069 33.333 0.00 0.00 0.00 2.32
1727 1778 2.158986 GCTCTGCTCTAATCCAAGCTGA 60.159 50.000 0.00 4.30 42.07 4.26
1753 1804 4.739046 AAAGACTGACGAAATCTGCAAG 57.261 40.909 0.00 0.00 0.00 4.01
1822 1874 3.780294 AGCACCTATCCTTGGTTGTATCA 59.220 43.478 0.00 0.00 35.28 2.15
1879 1931 8.335532 TCTTTTCTCTTGTTGTTTCTCTTTCA 57.664 30.769 0.00 0.00 0.00 2.69
2154 2206 2.295602 GGAAACCCCTGTCGGCCTA 61.296 63.158 0.00 0.00 0.00 3.93
2213 2265 0.893727 AAGATGGTGGTCGGTTTGGC 60.894 55.000 0.00 0.00 0.00 4.52
2298 2350 2.340443 CCGGCTCCTATTCCTCGC 59.660 66.667 0.00 0.00 0.00 5.03
2387 2439 1.003355 TAGGCTCCTGCTTGTGTGC 60.003 57.895 0.00 0.00 39.59 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.