Multiple sequence alignment - TraesCS4A01G029700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G029700 chr4A 100.000 2111 0 0 1 2111 21843396 21845506 0.000000e+00 3899
1 TraesCS4A01G029700 chr4A 86.836 433 39 10 855 1274 11623014 11622587 3.170000e-128 468
2 TraesCS4A01G029700 chr4A 83.696 460 48 20 856 1292 6033687 6033232 1.950000e-110 409
3 TraesCS4A01G029700 chr4B 83.333 1368 111 59 809 2111 555934619 555933304 0.000000e+00 1155
4 TraesCS4A01G029700 chr4B 87.333 450 38 9 856 1292 579103347 579103790 4.040000e-137 497
5 TraesCS4A01G029700 chr4B 85.969 449 48 10 855 1292 579390527 579390971 1.140000e-127 466
6 TraesCS4A01G029700 chr4B 88.406 345 28 8 864 1202 570346618 570346956 2.520000e-109 405
7 TraesCS4A01G029700 chr4B 81.395 172 12 5 424 595 555934915 555934764 2.840000e-24 122
8 TraesCS4A01G029700 chr4D 86.761 423 41 12 865 1278 456124197 456124613 6.870000e-125 457
9 TraesCS4A01G029700 chr4D 85.242 454 46 13 855 1292 463402275 463402723 4.130000e-122 448
10 TraesCS4A01G029700 chr4D 85.545 422 40 13 852 1255 477914167 477914585 2.500000e-114 422
11 TraesCS4A01G029700 chr4D 92.027 301 11 3 1591 1879 444522886 444523185 5.420000e-111 411
12 TraesCS4A01G029700 chr4D 87.500 352 16 6 1091 1415 444522483 444522833 4.250000e-102 381
13 TraesCS4A01G029700 chr4D 83.186 226 32 4 1 221 65171478 65171702 3.550000e-48 202
14 TraesCS4A01G029700 chr5D 85.616 292 25 4 1 276 477991822 477992112 7.370000e-75 291
15 TraesCS4A01G029700 chr5B 83.784 296 30 7 1 278 585483525 585483820 4.470000e-67 265
16 TraesCS4A01G029700 chr5B 86.222 225 27 3 2 222 492107796 492108020 7.530000e-60 241
17 TraesCS4A01G029700 chr1B 83.904 292 30 6 1 275 475286058 475285767 1.610000e-66 263
18 TraesCS4A01G029700 chr7B 83.448 290 31 6 1 273 362021538 362021249 9.670000e-64 254
19 TraesCS4A01G029700 chr1D 90.909 187 14 2 39 222 352942177 352941991 4.500000e-62 248
20 TraesCS4A01G029700 chr3B 83.478 230 33 4 1 226 655863977 655863749 2.120000e-50 209
21 TraesCS4A01G029700 chr3A 84.434 212 29 3 1 208 44222177 44221966 2.750000e-49 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G029700 chr4A 21843396 21845506 2110 False 3899.0 3899 100.0000 1 2111 1 chr4A.!!$F1 2110
1 TraesCS4A01G029700 chr4B 555933304 555934915 1611 True 638.5 1155 82.3640 424 2111 2 chr4B.!!$R1 1687
2 TraesCS4A01G029700 chr4D 444522483 444523185 702 False 396.0 411 89.7635 1091 1879 2 chr4D.!!$F5 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 270 0.035458 CAAGGGCGTCTGTTCTTCCT 59.965 55.0 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1397 1463 0.033796 CTCTACCCCTACCCACGACA 60.034 60.0 0.0 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.963733 CCATCCTTGCTTGACCAGA 57.036 52.632 0.00 0.00 0.00 3.86
19 20 2.431954 CCATCCTTGCTTGACCAGAT 57.568 50.000 0.00 0.00 0.00 2.90
20 21 2.731572 CCATCCTTGCTTGACCAGATT 58.268 47.619 0.00 0.00 0.00 2.40
21 22 2.426024 CCATCCTTGCTTGACCAGATTG 59.574 50.000 0.00 0.00 0.00 2.67
22 23 1.538047 TCCTTGCTTGACCAGATTGC 58.462 50.000 0.00 0.00 0.00 3.56
23 24 1.074405 TCCTTGCTTGACCAGATTGCT 59.926 47.619 0.00 0.00 0.00 3.91
24 25 1.891150 CCTTGCTTGACCAGATTGCTT 59.109 47.619 0.00 0.00 0.00 3.91
25 26 2.298163 CCTTGCTTGACCAGATTGCTTT 59.702 45.455 0.00 0.00 0.00 3.51
26 27 3.243975 CCTTGCTTGACCAGATTGCTTTT 60.244 43.478 0.00 0.00 0.00 2.27
27 28 3.648339 TGCTTGACCAGATTGCTTTTC 57.352 42.857 0.00 0.00 0.00 2.29
28 29 2.957680 TGCTTGACCAGATTGCTTTTCA 59.042 40.909 0.00 0.00 0.00 2.69
29 30 3.384146 TGCTTGACCAGATTGCTTTTCAA 59.616 39.130 0.00 0.00 39.32 2.69
30 31 4.141981 TGCTTGACCAGATTGCTTTTCAAA 60.142 37.500 0.00 0.00 38.34 2.69
31 32 4.992951 GCTTGACCAGATTGCTTTTCAAAT 59.007 37.500 0.00 0.00 38.34 2.32
32 33 5.467735 GCTTGACCAGATTGCTTTTCAAATT 59.532 36.000 0.00 0.00 38.34 1.82
33 34 6.347160 GCTTGACCAGATTGCTTTTCAAATTC 60.347 38.462 0.00 0.00 38.34 2.17
34 35 6.159299 TGACCAGATTGCTTTTCAAATTCA 57.841 33.333 0.00 0.00 38.34 2.57
35 36 6.761312 TGACCAGATTGCTTTTCAAATTCAT 58.239 32.000 0.00 0.00 38.34 2.57
36 37 6.869913 TGACCAGATTGCTTTTCAAATTCATC 59.130 34.615 0.00 0.00 38.34 2.92
37 38 6.168389 ACCAGATTGCTTTTCAAATTCATCC 58.832 36.000 0.00 0.00 38.34 3.51
38 39 5.583457 CCAGATTGCTTTTCAAATTCATCCC 59.417 40.000 0.00 0.00 38.34 3.85
39 40 5.583457 CAGATTGCTTTTCAAATTCATCCCC 59.417 40.000 0.00 0.00 38.34 4.81
40 41 4.970860 TTGCTTTTCAAATTCATCCCCA 57.029 36.364 0.00 0.00 0.00 4.96
41 42 4.970860 TGCTTTTCAAATTCATCCCCAA 57.029 36.364 0.00 0.00 0.00 4.12
42 43 4.640364 TGCTTTTCAAATTCATCCCCAAC 58.360 39.130 0.00 0.00 0.00 3.77
43 44 4.002982 GCTTTTCAAATTCATCCCCAACC 58.997 43.478 0.00 0.00 0.00 3.77
44 45 4.504689 GCTTTTCAAATTCATCCCCAACCA 60.505 41.667 0.00 0.00 0.00 3.67
45 46 5.804120 GCTTTTCAAATTCATCCCCAACCAT 60.804 40.000 0.00 0.00 0.00 3.55
46 47 6.576045 GCTTTTCAAATTCATCCCCAACCATA 60.576 38.462 0.00 0.00 0.00 2.74
47 48 6.942163 TTTCAAATTCATCCCCAACCATAA 57.058 33.333 0.00 0.00 0.00 1.90
48 49 6.543430 TTCAAATTCATCCCCAACCATAAG 57.457 37.500 0.00 0.00 0.00 1.73
49 50 5.836705 TCAAATTCATCCCCAACCATAAGA 58.163 37.500 0.00 0.00 0.00 2.10
50 51 5.656416 TCAAATTCATCCCCAACCATAAGAC 59.344 40.000 0.00 0.00 0.00 3.01
51 52 3.662759 TTCATCCCCAACCATAAGACC 57.337 47.619 0.00 0.00 0.00 3.85
52 53 1.488812 TCATCCCCAACCATAAGACCG 59.511 52.381 0.00 0.00 0.00 4.79
53 54 1.488812 CATCCCCAACCATAAGACCGA 59.511 52.381 0.00 0.00 0.00 4.69
54 55 1.887797 TCCCCAACCATAAGACCGAT 58.112 50.000 0.00 0.00 0.00 4.18
55 56 1.766496 TCCCCAACCATAAGACCGATC 59.234 52.381 0.00 0.00 0.00 3.69
56 57 1.540363 CCCCAACCATAAGACCGATCG 60.540 57.143 8.51 8.51 0.00 3.69
57 58 1.217882 CCAACCATAAGACCGATCGC 58.782 55.000 10.32 0.00 0.00 4.58
58 59 1.217882 CAACCATAAGACCGATCGCC 58.782 55.000 10.32 3.44 0.00 5.54
59 60 1.120530 AACCATAAGACCGATCGCCT 58.879 50.000 10.32 5.99 0.00 5.52
60 61 0.674534 ACCATAAGACCGATCGCCTC 59.325 55.000 10.32 6.25 0.00 4.70
62 63 1.004277 CATAAGACCGATCGCCTCGC 61.004 60.000 10.32 0.00 46.25 5.03
63 64 1.173444 ATAAGACCGATCGCCTCGCT 61.173 55.000 10.32 0.00 46.25 4.93
64 65 2.060004 TAAGACCGATCGCCTCGCTG 62.060 60.000 10.32 0.00 46.25 5.18
65 66 4.933064 GACCGATCGCCTCGCTGG 62.933 72.222 10.32 0.00 46.25 4.85
67 68 4.637489 CCGATCGCCTCGCTGGAG 62.637 72.222 10.32 0.00 46.25 3.86
68 69 3.893763 CGATCGCCTCGCTGGAGT 61.894 66.667 0.26 0.00 41.14 3.85
69 70 2.543802 CGATCGCCTCGCTGGAGTA 61.544 63.158 0.26 0.00 41.14 2.59
70 71 1.284408 GATCGCCTCGCTGGAGTAG 59.716 63.158 0.00 0.00 38.70 2.57
71 72 2.136196 GATCGCCTCGCTGGAGTAGG 62.136 65.000 0.00 0.00 38.70 3.18
72 73 2.626255 ATCGCCTCGCTGGAGTAGGA 62.626 60.000 0.00 0.00 38.70 2.94
73 74 2.196925 CGCCTCGCTGGAGTAGGAT 61.197 63.158 0.00 0.00 38.70 3.24
74 75 1.663173 GCCTCGCTGGAGTAGGATC 59.337 63.158 0.00 0.00 38.70 3.36
75 76 0.825840 GCCTCGCTGGAGTAGGATCT 60.826 60.000 0.00 0.00 38.70 2.75
76 77 0.958091 CCTCGCTGGAGTAGGATCTG 59.042 60.000 0.00 0.00 38.70 2.90
77 78 1.477740 CCTCGCTGGAGTAGGATCTGA 60.478 57.143 0.00 0.00 38.70 3.27
78 79 2.302260 CTCGCTGGAGTAGGATCTGAA 58.698 52.381 0.00 0.00 35.48 3.02
79 80 2.293122 CTCGCTGGAGTAGGATCTGAAG 59.707 54.545 0.00 0.00 35.48 3.02
80 81 2.092375 TCGCTGGAGTAGGATCTGAAGA 60.092 50.000 0.00 0.00 0.00 2.87
81 82 2.690497 CGCTGGAGTAGGATCTGAAGAA 59.310 50.000 0.00 0.00 0.00 2.52
82 83 3.131223 CGCTGGAGTAGGATCTGAAGAAA 59.869 47.826 0.00 0.00 0.00 2.52
83 84 4.202202 CGCTGGAGTAGGATCTGAAGAAAT 60.202 45.833 0.00 0.00 0.00 2.17
84 85 5.679601 GCTGGAGTAGGATCTGAAGAAATT 58.320 41.667 0.00 0.00 0.00 1.82
85 86 6.118852 GCTGGAGTAGGATCTGAAGAAATTT 58.881 40.000 0.00 0.00 0.00 1.82
86 87 6.601217 GCTGGAGTAGGATCTGAAGAAATTTT 59.399 38.462 0.00 0.00 0.00 1.82
87 88 7.770897 GCTGGAGTAGGATCTGAAGAAATTTTA 59.229 37.037 0.00 0.00 0.00 1.52
88 89 9.844257 CTGGAGTAGGATCTGAAGAAATTTTAT 57.156 33.333 0.00 0.00 0.00 1.40
93 94 9.943163 GTAGGATCTGAAGAAATTTTATTCAGC 57.057 33.333 29.04 20.42 46.11 4.26
94 95 7.701445 AGGATCTGAAGAAATTTTATTCAGCG 58.299 34.615 29.04 16.06 46.11 5.18
95 96 6.416161 GGATCTGAAGAAATTTTATTCAGCGC 59.584 38.462 29.04 23.69 46.11 5.92
96 97 5.640732 TCTGAAGAAATTTTATTCAGCGCC 58.359 37.500 29.04 3.56 46.11 6.53
97 98 5.182950 TCTGAAGAAATTTTATTCAGCGCCA 59.817 36.000 29.04 16.64 46.11 5.69
98 99 5.160641 TGAAGAAATTTTATTCAGCGCCAC 58.839 37.500 13.65 0.00 0.00 5.01
99 100 4.110036 AGAAATTTTATTCAGCGCCACC 57.890 40.909 2.29 0.00 0.00 4.61
100 101 3.509575 AGAAATTTTATTCAGCGCCACCA 59.490 39.130 2.29 0.00 0.00 4.17
101 102 4.160252 AGAAATTTTATTCAGCGCCACCAT 59.840 37.500 2.29 0.00 0.00 3.55
102 103 3.715628 ATTTTATTCAGCGCCACCATC 57.284 42.857 2.29 0.00 0.00 3.51
103 104 1.013596 TTTATTCAGCGCCACCATCG 58.986 50.000 2.29 0.00 0.00 3.84
125 126 4.847516 CGCCGAAGCCGACGATGA 62.848 66.667 0.00 0.00 44.28 2.92
126 127 2.508439 GCCGAAGCCGACGATGAA 60.508 61.111 0.00 0.00 38.22 2.57
127 128 2.799540 GCCGAAGCCGACGATGAAC 61.800 63.158 0.00 0.00 38.22 3.18
128 129 1.445410 CCGAAGCCGACGATGAACA 60.445 57.895 0.00 0.00 38.22 3.18
129 130 1.413767 CCGAAGCCGACGATGAACAG 61.414 60.000 0.00 0.00 38.22 3.16
130 131 1.710339 GAAGCCGACGATGAACAGC 59.290 57.895 0.00 0.00 0.00 4.40
131 132 1.696832 GAAGCCGACGATGAACAGCC 61.697 60.000 0.00 0.00 0.00 4.85
132 133 2.125512 GCCGACGATGAACAGCCT 60.126 61.111 0.00 0.00 0.00 4.58
133 134 1.141019 GCCGACGATGAACAGCCTA 59.859 57.895 0.00 0.00 0.00 3.93
134 135 0.459585 GCCGACGATGAACAGCCTAA 60.460 55.000 0.00 0.00 0.00 2.69
135 136 2.004583 CCGACGATGAACAGCCTAAA 57.995 50.000 0.00 0.00 0.00 1.85
136 137 2.343101 CCGACGATGAACAGCCTAAAA 58.657 47.619 0.00 0.00 0.00 1.52
137 138 2.739913 CCGACGATGAACAGCCTAAAAA 59.260 45.455 0.00 0.00 0.00 1.94
138 139 3.374058 CCGACGATGAACAGCCTAAAAAT 59.626 43.478 0.00 0.00 0.00 1.82
139 140 4.494199 CCGACGATGAACAGCCTAAAAATC 60.494 45.833 0.00 0.00 0.00 2.17
140 141 4.330074 CGACGATGAACAGCCTAAAAATCT 59.670 41.667 0.00 0.00 0.00 2.40
141 142 5.518847 CGACGATGAACAGCCTAAAAATCTA 59.481 40.000 0.00 0.00 0.00 1.98
142 143 6.035650 CGACGATGAACAGCCTAAAAATCTAA 59.964 38.462 0.00 0.00 0.00 2.10
143 144 7.412563 CGACGATGAACAGCCTAAAAATCTAAA 60.413 37.037 0.00 0.00 0.00 1.85
144 145 8.281212 ACGATGAACAGCCTAAAAATCTAAAT 57.719 30.769 0.00 0.00 0.00 1.40
145 146 8.739972 ACGATGAACAGCCTAAAAATCTAAATT 58.260 29.630 0.00 0.00 0.00 1.82
149 150 9.221933 TGAACAGCCTAAAAATCTAAATTACGA 57.778 29.630 0.00 0.00 0.00 3.43
150 151 9.704098 GAACAGCCTAAAAATCTAAATTACGAG 57.296 33.333 0.00 0.00 0.00 4.18
151 152 9.444600 AACAGCCTAAAAATCTAAATTACGAGA 57.555 29.630 0.00 0.00 0.00 4.04
152 153 9.099454 ACAGCCTAAAAATCTAAATTACGAGAG 57.901 33.333 0.00 0.00 0.00 3.20
197 198 4.767255 GCGAGCCCCTCACCACTG 62.767 72.222 0.00 0.00 0.00 3.66
198 199 2.997315 CGAGCCCCTCACCACTGA 60.997 66.667 0.00 0.00 0.00 3.41
199 200 2.665603 GAGCCCCTCACCACTGAC 59.334 66.667 0.00 0.00 0.00 3.51
200 201 3.302347 GAGCCCCTCACCACTGACG 62.302 68.421 0.00 0.00 0.00 4.35
201 202 3.311110 GCCCCTCACCACTGACGA 61.311 66.667 0.00 0.00 0.00 4.20
202 203 2.657237 CCCCTCACCACTGACGAC 59.343 66.667 0.00 0.00 0.00 4.34
203 204 2.657237 CCCTCACCACTGACGACC 59.343 66.667 0.00 0.00 0.00 4.79
204 205 2.207229 CCCTCACCACTGACGACCA 61.207 63.158 0.00 0.00 0.00 4.02
205 206 1.745890 CCTCACCACTGACGACCAA 59.254 57.895 0.00 0.00 0.00 3.67
206 207 0.319900 CCTCACCACTGACGACCAAG 60.320 60.000 0.00 0.00 0.00 3.61
207 208 0.319900 CTCACCACTGACGACCAAGG 60.320 60.000 0.00 0.00 0.00 3.61
208 209 1.961277 CACCACTGACGACCAAGGC 60.961 63.158 0.00 0.00 0.00 4.35
209 210 2.140792 ACCACTGACGACCAAGGCT 61.141 57.895 0.00 0.00 0.00 4.58
210 211 1.669115 CCACTGACGACCAAGGCTG 60.669 63.158 0.00 0.00 0.00 4.85
211 212 2.031163 ACTGACGACCAAGGCTGC 59.969 61.111 0.00 0.00 0.00 5.25
212 213 2.345244 CTGACGACCAAGGCTGCT 59.655 61.111 0.00 0.00 0.00 4.24
213 214 2.031012 TGACGACCAAGGCTGCTG 59.969 61.111 0.00 0.00 0.00 4.41
214 215 3.426568 GACGACCAAGGCTGCTGC 61.427 66.667 7.10 7.10 38.76 5.25
241 242 4.070552 GCGGCGGTGAAGACTCCT 62.071 66.667 9.78 0.00 0.00 3.69
242 243 2.182030 CGGCGGTGAAGACTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
243 244 2.182030 GGCGGTGAAGACTCCTCG 59.818 66.667 0.00 0.00 0.00 4.63
244 245 2.507324 GCGGTGAAGACTCCTCGC 60.507 66.667 0.00 0.00 35.75 5.03
245 246 2.202492 CGGTGAAGACTCCTCGCG 60.202 66.667 0.00 0.00 0.00 5.87
246 247 2.182030 GGTGAAGACTCCTCGCGG 59.818 66.667 6.13 0.00 0.00 6.46
247 248 2.507324 GTGAAGACTCCTCGCGGC 60.507 66.667 6.13 0.00 0.00 6.53
248 249 2.989253 TGAAGACTCCTCGCGGCA 60.989 61.111 6.13 0.00 0.00 5.69
249 250 2.202676 GAAGACTCCTCGCGGCAG 60.203 66.667 6.13 1.88 0.00 4.85
250 251 4.443266 AAGACTCCTCGCGGCAGC 62.443 66.667 6.13 0.00 40.74 5.25
252 253 4.742201 GACTCCTCGCGGCAGCAA 62.742 66.667 10.08 0.00 45.49 3.91
253 254 4.749310 ACTCCTCGCGGCAGCAAG 62.749 66.667 10.08 0.00 45.49 4.01
266 267 4.065110 GCAAGGGCGTCTGTTCTT 57.935 55.556 0.00 0.00 0.00 2.52
267 268 1.869690 GCAAGGGCGTCTGTTCTTC 59.130 57.895 0.00 0.00 0.00 2.87
268 269 1.578206 GCAAGGGCGTCTGTTCTTCC 61.578 60.000 0.00 0.00 0.00 3.46
269 270 0.035458 CAAGGGCGTCTGTTCTTCCT 59.965 55.000 0.00 0.00 0.00 3.36
270 271 0.765510 AAGGGCGTCTGTTCTTCCTT 59.234 50.000 0.00 0.00 0.00 3.36
271 272 0.321996 AGGGCGTCTGTTCTTCCTTC 59.678 55.000 0.00 0.00 0.00 3.46
272 273 1.014564 GGGCGTCTGTTCTTCCTTCG 61.015 60.000 0.00 0.00 0.00 3.79
273 274 0.038526 GGCGTCTGTTCTTCCTTCGA 60.039 55.000 0.00 0.00 0.00 3.71
274 275 1.341606 GCGTCTGTTCTTCCTTCGAG 58.658 55.000 0.00 0.00 0.00 4.04
275 276 1.983972 CGTCTGTTCTTCCTTCGAGG 58.016 55.000 0.00 0.00 36.46 4.63
276 277 1.540267 CGTCTGTTCTTCCTTCGAGGA 59.460 52.381 0.00 0.00 44.10 3.71
289 290 6.342338 TCCTTCGAGGAAGTATTTATAGGC 57.658 41.667 0.00 0.00 42.51 3.93
290 291 5.245526 TCCTTCGAGGAAGTATTTATAGGCC 59.754 44.000 0.00 0.00 42.51 5.19
291 292 5.246429 CCTTCGAGGAAGTATTTATAGGCCT 59.754 44.000 11.78 11.78 37.67 5.19
292 293 6.436532 CCTTCGAGGAAGTATTTATAGGCCTA 59.563 42.308 16.60 16.60 37.67 3.93
293 294 7.039223 CCTTCGAGGAAGTATTTATAGGCCTAA 60.039 40.741 18.42 1.93 37.67 2.69
294 295 7.844493 TCGAGGAAGTATTTATAGGCCTAAA 57.156 36.000 18.42 10.13 0.00 1.85
295 296 8.253867 TCGAGGAAGTATTTATAGGCCTAAAA 57.746 34.615 18.42 17.57 0.00 1.52
296 297 8.707449 TCGAGGAAGTATTTATAGGCCTAAAAA 58.293 33.333 18.42 11.63 0.00 1.94
297 298 8.989980 CGAGGAAGTATTTATAGGCCTAAAAAG 58.010 37.037 18.42 0.00 0.00 2.27
298 299 9.286170 GAGGAAGTATTTATAGGCCTAAAAAGG 57.714 37.037 18.42 0.00 0.00 3.11
299 300 8.788799 AGGAAGTATTTATAGGCCTAAAAAGGT 58.211 33.333 18.42 0.89 0.00 3.50
300 301 9.417561 GGAAGTATTTATAGGCCTAAAAAGGTT 57.582 33.333 18.42 11.97 0.00 3.50
302 303 8.234136 AGTATTTATAGGCCTAAAAAGGTTGC 57.766 34.615 18.42 7.43 0.00 4.17
303 304 5.570234 TTTATAGGCCTAAAAAGGTTGCG 57.430 39.130 18.42 0.00 0.00 4.85
304 305 1.170442 TAGGCCTAAAAAGGTTGCGC 58.830 50.000 10.98 0.00 0.00 6.09
305 306 1.443702 GGCCTAAAAAGGTTGCGCG 60.444 57.895 0.00 0.00 0.00 6.86
306 307 1.443702 GCCTAAAAAGGTTGCGCGG 60.444 57.895 8.83 0.00 0.00 6.46
307 308 1.953772 CCTAAAAAGGTTGCGCGGT 59.046 52.632 8.83 0.00 0.00 5.68
308 309 0.386731 CCTAAAAAGGTTGCGCGGTG 60.387 55.000 8.83 0.00 0.00 4.94
309 310 0.386731 CTAAAAAGGTTGCGCGGTGG 60.387 55.000 8.83 0.00 0.00 4.61
310 311 0.818445 TAAAAAGGTTGCGCGGTGGA 60.818 50.000 8.83 0.00 0.00 4.02
311 312 2.070654 AAAAAGGTTGCGCGGTGGAG 62.071 55.000 8.83 0.00 0.00 3.86
312 313 2.951475 AAAAGGTTGCGCGGTGGAGA 62.951 55.000 8.83 0.00 0.00 3.71
313 314 3.883744 AAGGTTGCGCGGTGGAGAG 62.884 63.158 8.83 0.00 0.00 3.20
314 315 4.373116 GGTTGCGCGGTGGAGAGA 62.373 66.667 8.83 0.00 0.00 3.10
315 316 2.125512 GTTGCGCGGTGGAGAGAT 60.126 61.111 8.83 0.00 0.00 2.75
316 317 1.141019 GTTGCGCGGTGGAGAGATA 59.859 57.895 8.83 0.00 0.00 1.98
317 318 0.249489 GTTGCGCGGTGGAGAGATAT 60.249 55.000 8.83 0.00 0.00 1.63
318 319 0.464036 TTGCGCGGTGGAGAGATATT 59.536 50.000 8.83 0.00 0.00 1.28
319 320 0.464036 TGCGCGGTGGAGAGATATTT 59.536 50.000 8.83 0.00 0.00 1.40
320 321 1.134521 TGCGCGGTGGAGAGATATTTT 60.135 47.619 8.83 0.00 0.00 1.82
321 322 1.940613 GCGCGGTGGAGAGATATTTTT 59.059 47.619 8.83 0.00 0.00 1.94
322 323 2.286418 GCGCGGTGGAGAGATATTTTTG 60.286 50.000 8.83 0.00 0.00 2.44
323 324 2.287915 CGCGGTGGAGAGATATTTTTGG 59.712 50.000 0.00 0.00 0.00 3.28
324 325 3.541632 GCGGTGGAGAGATATTTTTGGA 58.458 45.455 0.00 0.00 0.00 3.53
325 326 3.945285 GCGGTGGAGAGATATTTTTGGAA 59.055 43.478 0.00 0.00 0.00 3.53
326 327 4.398044 GCGGTGGAGAGATATTTTTGGAAA 59.602 41.667 0.00 0.00 0.00 3.13
327 328 5.105917 GCGGTGGAGAGATATTTTTGGAAAA 60.106 40.000 0.00 0.00 0.00 2.29
328 329 6.405842 GCGGTGGAGAGATATTTTTGGAAAAT 60.406 38.462 4.32 4.32 0.00 1.82
329 330 6.974622 CGGTGGAGAGATATTTTTGGAAAATG 59.025 38.462 8.48 0.00 0.00 2.32
330 331 7.148086 CGGTGGAGAGATATTTTTGGAAAATGA 60.148 37.037 8.48 0.00 0.00 2.57
331 332 8.193438 GGTGGAGAGATATTTTTGGAAAATGAG 58.807 37.037 8.48 0.00 0.00 2.90
332 333 8.743714 GTGGAGAGATATTTTTGGAAAATGAGT 58.256 33.333 8.48 0.00 0.00 3.41
333 334 9.973661 TGGAGAGATATTTTTGGAAAATGAGTA 57.026 29.630 8.48 0.00 0.00 2.59
349 350 7.775397 AAATGAGTATGCATTTTAATGGTGC 57.225 32.000 3.54 0.00 43.83 5.01
350 351 4.919206 TGAGTATGCATTTTAATGGTGCG 58.081 39.130 3.54 0.00 41.61 5.34
351 352 4.637977 TGAGTATGCATTTTAATGGTGCGA 59.362 37.500 3.54 0.00 41.61 5.10
352 353 5.173774 AGTATGCATTTTAATGGTGCGAG 57.826 39.130 3.54 0.00 41.61 5.03
353 354 4.881273 AGTATGCATTTTAATGGTGCGAGA 59.119 37.500 3.54 0.00 41.61 4.04
354 355 3.763097 TGCATTTTAATGGTGCGAGAG 57.237 42.857 4.76 0.00 41.61 3.20
355 356 3.081061 TGCATTTTAATGGTGCGAGAGT 58.919 40.909 4.76 0.00 41.61 3.24
356 357 4.257731 TGCATTTTAATGGTGCGAGAGTA 58.742 39.130 4.76 0.00 41.61 2.59
357 358 4.881273 TGCATTTTAATGGTGCGAGAGTAT 59.119 37.500 4.76 0.00 41.61 2.12
358 359 5.007626 TGCATTTTAATGGTGCGAGAGTATC 59.992 40.000 4.76 0.00 41.61 2.24
359 360 5.007626 GCATTTTAATGGTGCGAGAGTATCA 59.992 40.000 4.76 0.00 42.25 2.15
363 364 3.944055 ATGGTGCGAGAGTATCATACC 57.056 47.619 0.00 1.51 45.96 2.73
364 365 2.945456 TGGTGCGAGAGTATCATACCT 58.055 47.619 8.39 0.00 37.82 3.08
365 366 4.094830 TGGTGCGAGAGTATCATACCTA 57.905 45.455 8.39 0.00 37.82 3.08
366 367 4.663334 TGGTGCGAGAGTATCATACCTAT 58.337 43.478 8.39 0.00 37.82 2.57
367 368 5.077564 TGGTGCGAGAGTATCATACCTATT 58.922 41.667 8.39 0.00 37.82 1.73
368 369 5.183331 TGGTGCGAGAGTATCATACCTATTC 59.817 44.000 8.39 0.00 37.82 1.75
369 370 5.393243 GGTGCGAGAGTATCATACCTATTCC 60.393 48.000 0.00 0.00 37.82 3.01
370 371 5.183331 GTGCGAGAGTATCATACCTATTCCA 59.817 44.000 0.00 0.00 37.82 3.53
371 372 5.183331 TGCGAGAGTATCATACCTATTCCAC 59.817 44.000 0.00 0.00 37.82 4.02
372 373 5.416326 GCGAGAGTATCATACCTATTCCACT 59.584 44.000 0.00 0.00 37.82 4.00
373 374 6.071840 GCGAGAGTATCATACCTATTCCACTT 60.072 42.308 0.00 0.00 37.82 3.16
374 375 7.524038 GCGAGAGTATCATACCTATTCCACTTT 60.524 40.741 0.00 0.00 37.82 2.66
375 376 8.361139 CGAGAGTATCATACCTATTCCACTTTT 58.639 37.037 0.00 0.00 37.82 2.27
383 384 9.967451 TCATACCTATTCCACTTTTTATTCACA 57.033 29.630 0.00 0.00 0.00 3.58
392 393 9.883142 TTCCACTTTTTATTCACAAATTCAGTT 57.117 25.926 0.00 0.00 0.00 3.16
468 469 8.084073 CCTGCATTAGTTTCAGAAGATTGAAAA 58.916 33.333 3.05 0.00 45.62 2.29
469 470 8.801715 TGCATTAGTTTCAGAAGATTGAAAAC 57.198 30.769 3.05 0.00 45.62 2.43
470 471 8.412456 TGCATTAGTTTCAGAAGATTGAAAACA 58.588 29.630 3.05 0.00 45.62 2.83
471 472 9.415544 GCATTAGTTTCAGAAGATTGAAAACAT 57.584 29.630 3.05 0.00 45.62 2.71
476 477 9.971922 AGTTTCAGAAGATTGAAAACATTAAGG 57.028 29.630 3.05 0.00 45.62 2.69
477 478 9.196552 GTTTCAGAAGATTGAAAACATTAAGGG 57.803 33.333 3.05 0.00 45.62 3.95
478 479 8.477419 TTCAGAAGATTGAAAACATTAAGGGT 57.523 30.769 0.00 0.00 34.32 4.34
479 480 9.581289 TTCAGAAGATTGAAAACATTAAGGGTA 57.419 29.630 0.00 0.00 34.32 3.69
480 481 9.010029 TCAGAAGATTGAAAACATTAAGGGTAC 57.990 33.333 0.00 0.00 0.00 3.34
495 496 8.617809 CATTAAGGGTACATTAATGGTGTGTAC 58.382 37.037 22.84 12.86 42.75 2.90
504 505 8.547967 ACATTAATGGTGTGTACTAGAACAAG 57.452 34.615 19.37 0.00 0.00 3.16
507 508 4.617253 TGGTGTGTACTAGAACAAGCAT 57.383 40.909 0.00 0.00 0.00 3.79
537 538 7.997773 TTATATGTAGTAATCGAGGTGAGCT 57.002 36.000 0.00 0.00 0.00 4.09
547 548 4.471904 TCGAGGTGAGCTTTGATAATGT 57.528 40.909 0.00 0.00 0.00 2.71
548 549 4.433615 TCGAGGTGAGCTTTGATAATGTC 58.566 43.478 0.00 0.00 0.00 3.06
558 559 7.227314 TGAGCTTTGATAATGTCCATGTATGTC 59.773 37.037 0.00 0.00 0.00 3.06
563 564 5.764686 TGATAATGTCCATGTATGTCAAGCC 59.235 40.000 0.00 0.00 0.00 4.35
564 565 2.418368 TGTCCATGTATGTCAAGCCC 57.582 50.000 0.00 0.00 0.00 5.19
565 566 1.064758 TGTCCATGTATGTCAAGCCCC 60.065 52.381 0.00 0.00 0.00 5.80
566 567 0.180171 TCCATGTATGTCAAGCCCCG 59.820 55.000 0.00 0.00 0.00 5.73
567 568 0.180171 CCATGTATGTCAAGCCCCGA 59.820 55.000 0.00 0.00 0.00 5.14
568 569 1.299541 CATGTATGTCAAGCCCCGAC 58.700 55.000 0.00 0.00 0.00 4.79
569 570 0.908910 ATGTATGTCAAGCCCCGACA 59.091 50.000 3.25 3.25 46.77 4.35
572 573 4.395519 TGTCAAGCCCCGACATTG 57.604 55.556 0.00 0.00 38.45 2.82
595 596 6.169094 TGGTTTCTGAAGATTAGAAGCAGAG 58.831 40.000 0.00 0.00 37.19 3.35
596 597 5.584251 GGTTTCTGAAGATTAGAAGCAGAGG 59.416 44.000 0.00 0.00 37.19 3.69
597 598 6.402222 GTTTCTGAAGATTAGAAGCAGAGGA 58.598 40.000 0.00 0.00 36.99 3.71
598 599 5.850557 TCTGAAGATTAGAAGCAGAGGAG 57.149 43.478 0.00 0.00 32.36 3.69
599 600 5.514169 TCTGAAGATTAGAAGCAGAGGAGA 58.486 41.667 0.00 0.00 32.36 3.71
600 601 5.593909 TCTGAAGATTAGAAGCAGAGGAGAG 59.406 44.000 0.00 0.00 32.36 3.20
601 602 4.648762 TGAAGATTAGAAGCAGAGGAGAGG 59.351 45.833 0.00 0.00 0.00 3.69
602 603 4.534647 AGATTAGAAGCAGAGGAGAGGA 57.465 45.455 0.00 0.00 0.00 3.71
603 604 5.078683 AGATTAGAAGCAGAGGAGAGGAT 57.921 43.478 0.00 0.00 0.00 3.24
604 605 6.212840 AGATTAGAAGCAGAGGAGAGGATA 57.787 41.667 0.00 0.00 0.00 2.59
605 606 6.804083 AGATTAGAAGCAGAGGAGAGGATAT 58.196 40.000 0.00 0.00 0.00 1.63
606 607 7.938686 AGATTAGAAGCAGAGGAGAGGATATA 58.061 38.462 0.00 0.00 0.00 0.86
608 609 4.934356 AGAAGCAGAGGAGAGGATATAGG 58.066 47.826 0.00 0.00 0.00 2.57
610 611 5.075761 AGAAGCAGAGGAGAGGATATAGGAA 59.924 44.000 0.00 0.00 0.00 3.36
611 612 5.550829 AGCAGAGGAGAGGATATAGGAAT 57.449 43.478 0.00 0.00 0.00 3.01
612 613 5.271598 AGCAGAGGAGAGGATATAGGAATG 58.728 45.833 0.00 0.00 0.00 2.67
613 614 5.016138 AGCAGAGGAGAGGATATAGGAATGA 59.984 44.000 0.00 0.00 0.00 2.57
615 616 6.383726 GCAGAGGAGAGGATATAGGAATGAAT 59.616 42.308 0.00 0.00 0.00 2.57
616 617 7.417797 GCAGAGGAGAGGATATAGGAATGAATC 60.418 44.444 0.00 0.00 0.00 2.52
617 618 7.618907 CAGAGGAGAGGATATAGGAATGAATCA 59.381 40.741 0.00 0.00 0.00 2.57
618 619 8.182885 AGAGGAGAGGATATAGGAATGAATCAA 58.817 37.037 0.00 0.00 0.00 2.57
619 620 8.144862 AGGAGAGGATATAGGAATGAATCAAC 57.855 38.462 0.00 0.00 0.00 3.18
620 621 7.038659 GGAGAGGATATAGGAATGAATCAACG 58.961 42.308 0.00 0.00 0.00 4.10
624 625 9.092876 GAGGATATAGGAATGAATCAACGAATC 57.907 37.037 0.00 0.00 0.00 2.52
626 627 8.043710 GGATATAGGAATGAATCAACGAATCCT 58.956 37.037 0.00 8.95 39.13 3.24
627 628 8.783833 ATATAGGAATGAATCAACGAATCCTG 57.216 34.615 12.16 0.00 36.54 3.86
633 634 1.359848 ATCAACGAATCCTGTGCGTC 58.640 50.000 0.00 0.00 37.26 5.19
646 647 1.375396 TGCGTCGACAGATTTGGGG 60.375 57.895 17.16 0.00 0.00 4.96
648 649 2.452813 CGTCGACAGATTTGGGGCG 61.453 63.158 17.16 0.00 0.00 6.13
653 654 2.200170 GACAGATTTGGGGCGCACAC 62.200 60.000 13.89 0.50 0.00 3.82
656 657 2.520500 ATTTGGGGCGCACACACA 60.521 55.556 13.89 0.00 0.00 3.72
657 658 2.081425 GATTTGGGGCGCACACACAA 62.081 55.000 13.89 3.30 0.00 3.33
659 660 2.564553 TTTGGGGCGCACACACAAAC 62.565 55.000 13.89 0.00 0.00 2.93
660 661 3.522731 GGGGCGCACACACAAACA 61.523 61.111 13.89 0.00 0.00 2.83
661 662 2.492090 GGGCGCACACACAAACAA 59.508 55.556 10.83 0.00 0.00 2.83
662 663 1.067250 GGGCGCACACACAAACAAT 59.933 52.632 10.83 0.00 0.00 2.71
663 664 0.939106 GGGCGCACACACAAACAATC 60.939 55.000 10.83 0.00 0.00 2.67
665 666 0.316607 GCGCACACACAAACAATCGA 60.317 50.000 0.30 0.00 0.00 3.59
666 667 1.662360 CGCACACACAAACAATCGAG 58.338 50.000 0.00 0.00 0.00 4.04
667 668 1.003972 CGCACACACAAACAATCGAGT 60.004 47.619 0.00 0.00 0.00 4.18
668 669 2.219903 CGCACACACAAACAATCGAGTA 59.780 45.455 0.00 0.00 0.00 2.59
669 670 3.302805 CGCACACACAAACAATCGAGTAA 60.303 43.478 0.00 0.00 0.00 2.24
670 671 4.211389 GCACACACAAACAATCGAGTAAG 58.789 43.478 0.00 0.00 0.00 2.34
671 672 4.025229 GCACACACAAACAATCGAGTAAGA 60.025 41.667 0.00 0.00 0.00 2.10
672 673 5.670097 CACACACAAACAATCGAGTAAGAG 58.330 41.667 0.00 0.00 0.00 2.85
673 674 4.750098 ACACACAAACAATCGAGTAAGAGG 59.250 41.667 0.00 0.00 0.00 3.69
674 675 4.988540 CACACAAACAATCGAGTAAGAGGA 59.011 41.667 0.00 0.00 0.00 3.71
675 676 5.119279 CACACAAACAATCGAGTAAGAGGAG 59.881 44.000 0.00 0.00 0.00 3.69
679 680 6.433404 ACAAACAATCGAGTAAGAGGAGTAGA 59.567 38.462 0.00 0.00 0.00 2.59
680 681 7.122948 ACAAACAATCGAGTAAGAGGAGTAGAT 59.877 37.037 0.00 0.00 0.00 1.98
681 682 8.622157 CAAACAATCGAGTAAGAGGAGTAGATA 58.378 37.037 0.00 0.00 0.00 1.98
682 683 7.733402 ACAATCGAGTAAGAGGAGTAGATAC 57.267 40.000 0.00 0.00 0.00 2.24
683 684 7.511268 ACAATCGAGTAAGAGGAGTAGATACT 58.489 38.462 0.00 0.00 39.71 2.12
684 685 8.649591 ACAATCGAGTAAGAGGAGTAGATACTA 58.350 37.037 0.00 0.00 36.50 1.82
685 686 9.146984 CAATCGAGTAAGAGGAGTAGATACTAG 57.853 40.741 0.00 0.00 36.50 2.57
686 687 7.230849 TCGAGTAAGAGGAGTAGATACTAGG 57.769 44.000 0.00 0.00 36.50 3.02
687 688 6.782000 TCGAGTAAGAGGAGTAGATACTAGGT 59.218 42.308 0.00 0.00 36.50 3.08
689 690 7.933033 CGAGTAAGAGGAGTAGATACTAGGTTT 59.067 40.741 0.00 0.00 36.50 3.27
690 691 9.276590 GAGTAAGAGGAGTAGATACTAGGTTTC 57.723 40.741 0.00 0.00 36.50 2.78
691 692 8.219868 AGTAAGAGGAGTAGATACTAGGTTTCC 58.780 40.741 0.00 0.00 36.50 3.13
692 693 6.851965 AGAGGAGTAGATACTAGGTTTCCT 57.148 41.667 0.00 0.00 36.50 3.36
693 694 7.951157 AGAGGAGTAGATACTAGGTTTCCTA 57.049 40.000 0.00 0.00 36.50 2.94
694 695 8.347557 AGAGGAGTAGATACTAGGTTTCCTAA 57.652 38.462 0.00 0.00 35.49 2.69
695 696 8.442374 AGAGGAGTAGATACTAGGTTTCCTAAG 58.558 40.741 0.00 0.00 35.49 2.18
696 697 8.347557 AGGAGTAGATACTAGGTTTCCTAAGA 57.652 38.462 0.00 0.00 35.49 2.10
697 698 8.219868 AGGAGTAGATACTAGGTTTCCTAAGAC 58.780 40.741 0.00 0.00 35.49 3.01
698 699 7.997803 GGAGTAGATACTAGGTTTCCTAAGACA 59.002 40.741 0.00 0.00 35.49 3.41
699 700 9.577222 GAGTAGATACTAGGTTTCCTAAGACAT 57.423 37.037 0.00 0.00 35.49 3.06
700 701 9.577222 AGTAGATACTAGGTTTCCTAAGACATC 57.423 37.037 0.00 0.00 35.49 3.06
701 702 9.352191 GTAGATACTAGGTTTCCTAAGACATCA 57.648 37.037 0.00 0.00 35.49 3.07
702 703 8.840200 AGATACTAGGTTTCCTAAGACATCAA 57.160 34.615 0.00 0.00 35.49 2.57
703 704 9.268282 AGATACTAGGTTTCCTAAGACATCAAA 57.732 33.333 0.00 0.00 35.49 2.69
704 705 9.886132 GATACTAGGTTTCCTAAGACATCAAAA 57.114 33.333 0.00 0.00 35.49 2.44
726 727 6.432403 AAAAATTGGCCCTGTTTATTCTGA 57.568 33.333 0.00 0.00 0.00 3.27
727 728 5.405935 AAATTGGCCCTGTTTATTCTGAC 57.594 39.130 0.00 0.00 0.00 3.51
728 729 3.517296 TTGGCCCTGTTTATTCTGACA 57.483 42.857 0.00 0.00 0.00 3.58
729 730 3.071874 TGGCCCTGTTTATTCTGACAG 57.928 47.619 0.00 0.00 42.21 3.51
733 734 3.189287 GCCCTGTTTATTCTGACAGTGTG 59.811 47.826 0.00 0.00 41.24 3.82
741 742 9.114952 TGTTTATTCTGACAGTGTGTGATTTTA 57.885 29.630 0.00 0.00 0.00 1.52
742 743 9.599322 GTTTATTCTGACAGTGTGTGATTTTAG 57.401 33.333 0.00 0.00 0.00 1.85
744 745 7.807977 ATTCTGACAGTGTGTGATTTTAGTT 57.192 32.000 0.00 0.00 0.00 2.24
745 746 8.902540 ATTCTGACAGTGTGTGATTTTAGTTA 57.097 30.769 0.00 0.00 0.00 2.24
746 747 7.946655 TCTGACAGTGTGTGATTTTAGTTAG 57.053 36.000 0.00 0.00 0.00 2.34
747 748 6.423905 TCTGACAGTGTGTGATTTTAGTTAGC 59.576 38.462 0.00 0.00 0.00 3.09
752 753 7.095060 ACAGTGTGTGATTTTAGTTAGCATCAG 60.095 37.037 0.00 0.00 0.00 2.90
753 754 6.024049 GTGTGTGATTTTAGTTAGCATCAGC 58.976 40.000 0.00 0.00 42.56 4.26
770 771 3.676091 GCGACAAGCTGCGTATTTT 57.324 47.368 0.00 0.00 44.04 1.82
771 772 2.798834 GCGACAAGCTGCGTATTTTA 57.201 45.000 0.00 0.00 44.04 1.52
772 773 3.111958 GCGACAAGCTGCGTATTTTAA 57.888 42.857 0.00 0.00 44.04 1.52
773 774 3.484683 GCGACAAGCTGCGTATTTTAAA 58.515 40.909 0.00 0.00 44.04 1.52
774 775 3.538392 GCGACAAGCTGCGTATTTTAAAG 59.462 43.478 0.00 0.00 44.04 1.85
775 776 4.668177 GCGACAAGCTGCGTATTTTAAAGA 60.668 41.667 0.00 0.00 44.04 2.52
776 777 5.015733 CGACAAGCTGCGTATTTTAAAGAG 58.984 41.667 0.00 0.00 0.00 2.85
777 778 5.296813 ACAAGCTGCGTATTTTAAAGAGG 57.703 39.130 0.00 0.00 0.00 3.69
778 779 4.760204 ACAAGCTGCGTATTTTAAAGAGGT 59.240 37.500 0.00 0.00 0.00 3.85
779 780 4.946784 AGCTGCGTATTTTAAAGAGGTG 57.053 40.909 0.00 0.00 0.00 4.00
780 781 4.575885 AGCTGCGTATTTTAAAGAGGTGA 58.424 39.130 0.00 0.00 0.00 4.02
781 782 5.186198 AGCTGCGTATTTTAAAGAGGTGAT 58.814 37.500 0.00 0.00 0.00 3.06
782 783 5.648092 AGCTGCGTATTTTAAAGAGGTGATT 59.352 36.000 0.00 0.00 0.00 2.57
783 784 6.151144 AGCTGCGTATTTTAAAGAGGTGATTT 59.849 34.615 0.00 0.00 0.00 2.17
784 785 6.251376 GCTGCGTATTTTAAAGAGGTGATTTG 59.749 38.462 0.00 0.00 0.00 2.32
785 786 7.441890 TGCGTATTTTAAAGAGGTGATTTGA 57.558 32.000 0.00 0.00 0.00 2.69
786 787 7.877003 TGCGTATTTTAAAGAGGTGATTTGAA 58.123 30.769 0.00 0.00 0.00 2.69
787 788 8.519526 TGCGTATTTTAAAGAGGTGATTTGAAT 58.480 29.630 0.00 0.00 0.00 2.57
788 789 9.010366 GCGTATTTTAAAGAGGTGATTTGAATC 57.990 33.333 0.00 0.00 35.97 2.52
842 853 3.126000 CGTCCTCAATTCTGAAGAAAGCC 59.874 47.826 0.00 0.00 37.61 4.35
869 880 6.822676 TCAGGCACAAAAGAACAAATTTTCAT 59.177 30.769 0.00 0.00 0.00 2.57
874 885 7.304792 GCACAAAAGAACAAATTTTCATTTCGC 60.305 33.333 0.00 0.00 29.41 4.70
886 897 0.678950 CATTTCGCTTTGGTTGGGGT 59.321 50.000 0.00 0.00 0.00 4.95
912 923 3.677648 CCCAGCCAGCAGTGCAAC 61.678 66.667 19.20 5.88 0.00 4.17
913 924 4.034258 CCAGCCAGCAGTGCAACG 62.034 66.667 19.20 5.00 45.86 4.10
914 925 4.034258 CAGCCAGCAGTGCAACGG 62.034 66.667 19.20 15.35 45.86 4.44
932 943 2.669569 CTGGGCGACACACAAGGG 60.670 66.667 0.00 0.00 0.00 3.95
937 948 4.263572 CGACACACAAGGGCCCCA 62.264 66.667 21.43 0.00 0.00 4.96
938 949 2.282462 GACACACAAGGGCCCCAG 60.282 66.667 21.43 14.64 0.00 4.45
958 969 1.275291 GTAGCAAGCTACTGTGGTGGA 59.725 52.381 21.61 0.00 43.92 4.02
1079 1090 0.107165 AAGGCCGAGAAAGGTATGCC 60.107 55.000 0.00 0.00 39.17 4.40
1085 1096 1.069358 CGAGAAAGGTATGCCTCTCCC 59.931 57.143 1.55 0.00 46.33 4.30
1086 1097 2.403561 GAGAAAGGTATGCCTCTCCCT 58.596 52.381 1.55 0.00 46.33 4.20
1087 1098 2.774809 GAGAAAGGTATGCCTCTCCCTT 59.225 50.000 1.55 0.00 46.33 3.95
1089 1100 2.577772 AAGGTATGCCTCTCCCTTCT 57.422 50.000 1.55 0.00 46.33 2.85
1102 1113 2.046892 CTTCTGCCGTGGGTCTGG 60.047 66.667 0.00 0.00 0.00 3.86
1169 1180 0.170561 GGACTAAACGAGAGAGCGCA 59.829 55.000 11.47 0.00 33.86 6.09
1170 1181 1.540407 GACTAAACGAGAGAGCGCAG 58.460 55.000 11.47 0.00 33.86 5.18
1255 1275 4.415179 TGAATAAGGCCCAACATAGATGGA 59.585 41.667 0.00 0.00 40.56 3.41
1308 1330 5.573146 CGGAACTTGCCTATTTTCATCTTC 58.427 41.667 0.00 0.00 0.00 2.87
1312 1334 5.440610 ACTTGCCTATTTTCATCTTCGGAT 58.559 37.500 0.00 0.00 34.56 4.18
1333 1366 4.361253 GGCAACGCAAGACTGAGA 57.639 55.556 0.00 0.00 43.62 3.27
1334 1367 2.616969 GGCAACGCAAGACTGAGAA 58.383 52.632 0.00 0.00 43.62 2.87
1347 1380 3.896272 AGACTGAGAAGGTAAACTCCGTT 59.104 43.478 0.00 0.00 32.52 4.44
1361 1394 1.225745 CCGTTGATCGAGTTTGCGC 60.226 57.895 0.00 0.00 42.86 6.09
1456 1532 2.738521 CCTCTTGTGGTGCGACCG 60.739 66.667 0.00 0.00 42.58 4.79
1476 1552 1.501741 GCATGTAGCACAACACCGG 59.498 57.895 0.00 0.00 44.79 5.28
1477 1553 1.501741 CATGTAGCACAACACCGGC 59.498 57.895 0.00 0.00 30.75 6.13
1478 1554 2.032634 ATGTAGCACAACACCGGCG 61.033 57.895 0.00 0.00 30.75 6.46
1479 1555 4.084888 GTAGCACAACACCGGCGC 62.085 66.667 0.00 0.00 0.00 6.53
1480 1556 4.610714 TAGCACAACACCGGCGCA 62.611 61.111 10.83 0.00 0.00 6.09
1499 1575 0.818296 ACGGCTAGCAGGAGTAACAG 59.182 55.000 19.27 0.00 0.00 3.16
1500 1576 0.528684 CGGCTAGCAGGAGTAACAGC 60.529 60.000 18.24 0.00 0.00 4.40
1502 1578 0.528684 GCTAGCAGGAGTAACAGCGG 60.529 60.000 10.63 0.00 0.00 5.52
1526 1613 1.299976 GGGGACGGTCAGCATCTTT 59.700 57.895 10.76 0.00 0.00 2.52
1545 1632 1.513858 TCCGGGTTATAGGGTTGCAT 58.486 50.000 0.00 0.00 0.00 3.96
1546 1633 1.847737 TCCGGGTTATAGGGTTGCATT 59.152 47.619 0.00 0.00 0.00 3.56
1547 1634 2.242708 TCCGGGTTATAGGGTTGCATTT 59.757 45.455 0.00 0.00 0.00 2.32
1548 1635 2.360801 CCGGGTTATAGGGTTGCATTTG 59.639 50.000 0.00 0.00 0.00 2.32
1549 1636 2.223711 CGGGTTATAGGGTTGCATTTGC 60.224 50.000 0.00 0.00 42.50 3.68
1582 1669 3.181516 GGATCTCAAATCTGTCAACGCAC 60.182 47.826 0.00 0.00 0.00 5.34
1583 1670 1.792367 TCTCAAATCTGTCAACGCACG 59.208 47.619 0.00 0.00 0.00 5.34
1584 1671 0.865111 TCAAATCTGTCAACGCACGG 59.135 50.000 0.00 0.00 0.00 4.94
1585 1672 0.110238 CAAATCTGTCAACGCACGGG 60.110 55.000 0.00 0.00 0.00 5.28
1586 1673 0.534203 AAATCTGTCAACGCACGGGT 60.534 50.000 0.00 0.00 0.00 5.28
1587 1674 0.534203 AATCTGTCAACGCACGGGTT 60.534 50.000 0.00 0.00 0.00 4.11
1588 1675 0.319083 ATCTGTCAACGCACGGGTTA 59.681 50.000 0.00 0.00 0.00 2.85
1589 1676 0.319083 TCTGTCAACGCACGGGTTAT 59.681 50.000 0.00 0.00 0.00 1.89
1597 1684 3.756933 ACGCACGGGTTATGGTTATAT 57.243 42.857 0.00 0.00 0.00 0.86
1668 1766 7.067532 TGTTAAAGCATGATGTAGTAAACCG 57.932 36.000 0.00 0.00 0.00 4.44
1674 1772 3.581024 TGATGTAGTAAACCGAACGCT 57.419 42.857 0.00 0.00 0.00 5.07
1712 1810 2.226330 TCGCACAAACCTGCAAGTAAT 58.774 42.857 0.00 0.00 36.94 1.89
1717 1815 2.558359 ACAAACCTGCAAGTAATCTGCC 59.442 45.455 0.00 0.00 0.00 4.85
1893 1992 8.818057 GGTGTACTATATCTTTTACAAGCACAG 58.182 37.037 0.00 0.00 0.00 3.66
1895 1994 9.366216 TGTACTATATCTTTTACAAGCACAGTG 57.634 33.333 0.00 0.00 0.00 3.66
1896 1995 9.367444 GTACTATATCTTTTACAAGCACAGTGT 57.633 33.333 1.61 0.00 0.00 3.55
1907 2006 6.545504 ACAAGCACAGTGTGACTAATTTAG 57.454 37.500 27.37 11.17 35.23 1.85
1909 2008 4.641396 AGCACAGTGTGACTAATTTAGCA 58.359 39.130 27.37 0.72 35.23 3.49
1913 2012 6.535150 GCACAGTGTGACTAATTTAGCAGATA 59.465 38.462 27.37 0.00 35.23 1.98
1944 2043 3.504134 AGCACAGCCAGATATACTACTCG 59.496 47.826 0.00 0.00 0.00 4.18
1948 2047 3.127895 CAGCCAGATATACTACTCGCTCC 59.872 52.174 0.00 0.00 0.00 4.70
2014 2113 7.116662 TGCTTAAACGTCATATGTTTCGTAACT 59.883 33.333 17.67 11.22 38.23 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.426024 CAATCTGGTCAAGCAAGGATGG 59.574 50.000 0.00 0.00 0.00 3.51
1 2 2.159282 GCAATCTGGTCAAGCAAGGATG 60.159 50.000 0.00 0.00 0.00 3.51
3 4 1.074405 AGCAATCTGGTCAAGCAAGGA 59.926 47.619 0.00 0.00 0.00 3.36
4 5 1.542492 AGCAATCTGGTCAAGCAAGG 58.458 50.000 0.00 0.00 0.00 3.61
5 6 3.655276 AAAGCAATCTGGTCAAGCAAG 57.345 42.857 0.00 0.00 0.00 4.01
6 7 3.384146 TGAAAAGCAATCTGGTCAAGCAA 59.616 39.130 0.00 0.00 0.00 3.91
7 8 2.957680 TGAAAAGCAATCTGGTCAAGCA 59.042 40.909 0.00 0.00 0.00 3.91
8 9 3.648339 TGAAAAGCAATCTGGTCAAGC 57.352 42.857 0.00 0.00 0.00 4.01
9 10 6.702723 TGAATTTGAAAAGCAATCTGGTCAAG 59.297 34.615 0.00 0.00 36.15 3.02
10 11 6.580788 TGAATTTGAAAAGCAATCTGGTCAA 58.419 32.000 0.00 0.00 36.15 3.18
11 12 6.159299 TGAATTTGAAAAGCAATCTGGTCA 57.841 33.333 0.00 0.00 36.15 4.02
12 13 6.312180 GGATGAATTTGAAAAGCAATCTGGTC 59.688 38.462 0.00 0.00 36.15 4.02
13 14 6.168389 GGATGAATTTGAAAAGCAATCTGGT 58.832 36.000 0.00 0.00 36.15 4.00
14 15 5.583457 GGGATGAATTTGAAAAGCAATCTGG 59.417 40.000 0.00 0.00 36.15 3.86
15 16 5.583457 GGGGATGAATTTGAAAAGCAATCTG 59.417 40.000 0.00 0.00 36.15 2.90
16 17 5.248934 TGGGGATGAATTTGAAAAGCAATCT 59.751 36.000 0.00 0.00 36.15 2.40
17 18 5.490159 TGGGGATGAATTTGAAAAGCAATC 58.510 37.500 0.00 0.00 36.15 2.67
18 19 5.502089 TGGGGATGAATTTGAAAAGCAAT 57.498 34.783 0.00 0.00 36.15 3.56
19 20 4.970860 TGGGGATGAATTTGAAAAGCAA 57.029 36.364 0.00 0.00 33.88 3.91
20 21 4.504689 GGTTGGGGATGAATTTGAAAAGCA 60.505 41.667 0.00 0.00 0.00 3.91
21 22 4.002982 GGTTGGGGATGAATTTGAAAAGC 58.997 43.478 0.00 0.00 0.00 3.51
22 23 5.226194 TGGTTGGGGATGAATTTGAAAAG 57.774 39.130 0.00 0.00 0.00 2.27
23 24 5.839517 ATGGTTGGGGATGAATTTGAAAA 57.160 34.783 0.00 0.00 0.00 2.29
24 25 6.728164 TCTTATGGTTGGGGATGAATTTGAAA 59.272 34.615 0.00 0.00 0.00 2.69
25 26 6.154363 GTCTTATGGTTGGGGATGAATTTGAA 59.846 38.462 0.00 0.00 0.00 2.69
26 27 5.656416 GTCTTATGGTTGGGGATGAATTTGA 59.344 40.000 0.00 0.00 0.00 2.69
27 28 5.163416 GGTCTTATGGTTGGGGATGAATTTG 60.163 44.000 0.00 0.00 0.00 2.32
28 29 4.962362 GGTCTTATGGTTGGGGATGAATTT 59.038 41.667 0.00 0.00 0.00 1.82
29 30 4.546674 GGTCTTATGGTTGGGGATGAATT 58.453 43.478 0.00 0.00 0.00 2.17
30 31 3.435026 CGGTCTTATGGTTGGGGATGAAT 60.435 47.826 0.00 0.00 0.00 2.57
31 32 2.092646 CGGTCTTATGGTTGGGGATGAA 60.093 50.000 0.00 0.00 0.00 2.57
32 33 1.488812 CGGTCTTATGGTTGGGGATGA 59.511 52.381 0.00 0.00 0.00 2.92
33 34 1.488812 TCGGTCTTATGGTTGGGGATG 59.511 52.381 0.00 0.00 0.00 3.51
34 35 1.887797 TCGGTCTTATGGTTGGGGAT 58.112 50.000 0.00 0.00 0.00 3.85
35 36 1.766496 GATCGGTCTTATGGTTGGGGA 59.234 52.381 0.00 0.00 0.00 4.81
36 37 1.540363 CGATCGGTCTTATGGTTGGGG 60.540 57.143 7.38 0.00 0.00 4.96
37 38 1.865865 CGATCGGTCTTATGGTTGGG 58.134 55.000 7.38 0.00 0.00 4.12
38 39 1.217882 GCGATCGGTCTTATGGTTGG 58.782 55.000 18.30 0.00 0.00 3.77
39 40 1.202533 AGGCGATCGGTCTTATGGTTG 60.203 52.381 18.30 0.00 0.00 3.77
40 41 1.068741 GAGGCGATCGGTCTTATGGTT 59.931 52.381 18.30 0.00 0.00 3.67
41 42 0.674534 GAGGCGATCGGTCTTATGGT 59.325 55.000 18.30 0.00 0.00 3.55
42 43 3.498676 GAGGCGATCGGTCTTATGG 57.501 57.895 18.30 0.00 0.00 2.74
52 53 1.284408 CTACTCCAGCGAGGCGATC 59.716 63.158 0.00 0.00 40.77 3.69
53 54 2.196925 CCTACTCCAGCGAGGCGAT 61.197 63.158 0.00 0.00 40.77 4.58
54 55 2.626255 ATCCTACTCCAGCGAGGCGA 62.626 60.000 0.00 0.00 40.77 5.54
55 56 2.136196 GATCCTACTCCAGCGAGGCG 62.136 65.000 0.00 0.00 40.77 5.52
56 57 0.825840 AGATCCTACTCCAGCGAGGC 60.826 60.000 0.00 0.00 40.77 4.70
57 58 0.958091 CAGATCCTACTCCAGCGAGG 59.042 60.000 0.00 0.00 40.77 4.63
58 59 1.974265 TCAGATCCTACTCCAGCGAG 58.026 55.000 0.00 0.00 42.32 5.03
59 60 2.092375 TCTTCAGATCCTACTCCAGCGA 60.092 50.000 0.00 0.00 0.00 4.93
60 61 2.302260 TCTTCAGATCCTACTCCAGCG 58.698 52.381 0.00 0.00 0.00 5.18
61 62 4.744795 TTTCTTCAGATCCTACTCCAGC 57.255 45.455 0.00 0.00 0.00 4.85
62 63 9.844257 ATAAAATTTCTTCAGATCCTACTCCAG 57.156 33.333 0.00 0.00 0.00 3.86
67 68 9.943163 GCTGAATAAAATTTCTTCAGATCCTAC 57.057 33.333 29.55 16.58 45.57 3.18
68 69 8.830580 CGCTGAATAAAATTTCTTCAGATCCTA 58.169 33.333 29.55 5.01 45.57 2.94
69 70 7.680588 GCGCTGAATAAAATTTCTTCAGATCCT 60.681 37.037 29.55 3.23 45.57 3.24
70 71 6.416161 GCGCTGAATAAAATTTCTTCAGATCC 59.584 38.462 29.55 18.75 45.57 3.36
71 72 6.416161 GGCGCTGAATAAAATTTCTTCAGATC 59.584 38.462 29.55 22.60 45.57 2.75
72 73 6.127647 TGGCGCTGAATAAAATTTCTTCAGAT 60.128 34.615 29.55 5.01 45.57 2.90
73 74 5.182950 TGGCGCTGAATAAAATTTCTTCAGA 59.817 36.000 29.55 16.28 45.57 3.27
74 75 5.287035 GTGGCGCTGAATAAAATTTCTTCAG 59.713 40.000 25.11 25.11 45.51 3.02
75 76 5.160641 GTGGCGCTGAATAAAATTTCTTCA 58.839 37.500 7.64 12.83 0.00 3.02
76 77 4.562789 GGTGGCGCTGAATAAAATTTCTTC 59.437 41.667 7.64 0.00 0.00 2.87
77 78 4.021544 TGGTGGCGCTGAATAAAATTTCTT 60.022 37.500 7.64 0.00 0.00 2.52
78 79 3.509575 TGGTGGCGCTGAATAAAATTTCT 59.490 39.130 7.64 0.00 0.00 2.52
79 80 3.843999 TGGTGGCGCTGAATAAAATTTC 58.156 40.909 7.64 0.00 0.00 2.17
80 81 3.951775 TGGTGGCGCTGAATAAAATTT 57.048 38.095 7.64 0.00 0.00 1.82
81 82 3.489059 CGATGGTGGCGCTGAATAAAATT 60.489 43.478 7.64 0.00 0.00 1.82
82 83 2.033299 CGATGGTGGCGCTGAATAAAAT 59.967 45.455 7.64 0.00 0.00 1.82
83 84 1.400142 CGATGGTGGCGCTGAATAAAA 59.600 47.619 7.64 0.00 0.00 1.52
84 85 1.013596 CGATGGTGGCGCTGAATAAA 58.986 50.000 7.64 0.00 0.00 1.40
85 86 2.689083 CGATGGTGGCGCTGAATAA 58.311 52.632 7.64 0.00 0.00 1.40
86 87 4.436515 CGATGGTGGCGCTGAATA 57.563 55.556 7.64 0.00 0.00 1.75
109 110 2.508439 TTCATCGTCGGCTTCGGC 60.508 61.111 0.00 0.00 40.88 5.54
110 111 1.413767 CTGTTCATCGTCGGCTTCGG 61.414 60.000 0.00 0.00 34.13 4.30
111 112 1.991430 CTGTTCATCGTCGGCTTCG 59.009 57.895 0.00 0.00 0.00 3.79
112 113 1.696832 GGCTGTTCATCGTCGGCTTC 61.697 60.000 0.00 0.00 36.35 3.86
113 114 1.741770 GGCTGTTCATCGTCGGCTT 60.742 57.895 0.00 0.00 36.35 4.35
114 115 1.320344 TAGGCTGTTCATCGTCGGCT 61.320 55.000 0.00 0.00 36.35 5.52
115 116 0.459585 TTAGGCTGTTCATCGTCGGC 60.460 55.000 0.00 0.00 35.47 5.54
116 117 2.004583 TTTAGGCTGTTCATCGTCGG 57.995 50.000 0.00 0.00 0.00 4.79
117 118 4.330074 AGATTTTTAGGCTGTTCATCGTCG 59.670 41.667 0.00 0.00 0.00 5.12
118 119 5.803020 AGATTTTTAGGCTGTTCATCGTC 57.197 39.130 0.00 0.00 0.00 4.20
119 120 7.681939 TTTAGATTTTTAGGCTGTTCATCGT 57.318 32.000 0.00 0.00 0.00 3.73
123 124 9.221933 TCGTAATTTAGATTTTTAGGCTGTTCA 57.778 29.630 0.00 0.00 0.00 3.18
124 125 9.704098 CTCGTAATTTAGATTTTTAGGCTGTTC 57.296 33.333 0.00 0.00 0.00 3.18
125 126 9.444600 TCTCGTAATTTAGATTTTTAGGCTGTT 57.555 29.630 0.00 0.00 0.00 3.16
126 127 9.099454 CTCTCGTAATTTAGATTTTTAGGCTGT 57.901 33.333 0.00 0.00 0.00 4.40
127 128 9.099454 ACTCTCGTAATTTAGATTTTTAGGCTG 57.901 33.333 0.00 0.00 0.00 4.85
180 181 4.767255 CAGTGGTGAGGGGCTCGC 62.767 72.222 0.00 0.00 39.93 5.03
181 182 2.997315 TCAGTGGTGAGGGGCTCG 60.997 66.667 0.00 0.00 32.35 5.03
182 183 2.665603 GTCAGTGGTGAGGGGCTC 59.334 66.667 0.00 0.00 31.53 4.70
183 184 3.314331 CGTCAGTGGTGAGGGGCT 61.314 66.667 0.00 0.00 35.33 5.19
184 185 3.311110 TCGTCAGTGGTGAGGGGC 61.311 66.667 0.00 0.00 38.80 5.80
185 186 2.657237 GTCGTCAGTGGTGAGGGG 59.343 66.667 0.00 0.00 38.80 4.79
186 187 1.754380 TTGGTCGTCAGTGGTGAGGG 61.754 60.000 0.00 0.00 38.80 4.30
187 188 0.319900 CTTGGTCGTCAGTGGTGAGG 60.320 60.000 0.00 0.00 39.51 3.86
188 189 0.319900 CCTTGGTCGTCAGTGGTGAG 60.320 60.000 0.00 0.00 31.53 3.51
189 190 1.745890 CCTTGGTCGTCAGTGGTGA 59.254 57.895 0.00 0.00 0.00 4.02
190 191 1.961277 GCCTTGGTCGTCAGTGGTG 60.961 63.158 0.00 0.00 0.00 4.17
191 192 2.140792 AGCCTTGGTCGTCAGTGGT 61.141 57.895 0.00 0.00 0.00 4.16
192 193 1.669115 CAGCCTTGGTCGTCAGTGG 60.669 63.158 0.00 0.00 0.00 4.00
193 194 2.320587 GCAGCCTTGGTCGTCAGTG 61.321 63.158 0.00 0.00 0.00 3.66
194 195 2.031163 GCAGCCTTGGTCGTCAGT 59.969 61.111 0.00 0.00 0.00 3.41
195 196 2.031516 CAGCAGCCTTGGTCGTCAG 61.032 63.158 0.00 0.00 31.36 3.51
196 197 2.031012 CAGCAGCCTTGGTCGTCA 59.969 61.111 0.00 0.00 31.36 4.35
197 198 3.426568 GCAGCAGCCTTGGTCGTC 61.427 66.667 0.00 0.00 31.36 4.20
224 225 3.991536 GAGGAGTCTTCACCGCCGC 62.992 68.421 0.00 0.00 0.00 6.53
225 226 2.182030 GAGGAGTCTTCACCGCCG 59.818 66.667 0.00 0.00 0.00 6.46
226 227 2.182030 CGAGGAGTCTTCACCGCC 59.818 66.667 2.90 0.00 0.00 6.13
227 228 2.507324 GCGAGGAGTCTTCACCGC 60.507 66.667 2.90 2.77 38.07 5.68
228 229 2.202492 CGCGAGGAGTCTTCACCG 60.202 66.667 0.00 0.91 0.00 4.94
246 247 2.970974 GAACAGACGCCCTTGCTGC 61.971 63.158 0.00 0.00 33.03 5.25
247 248 0.886490 AAGAACAGACGCCCTTGCTG 60.886 55.000 0.00 0.00 34.43 4.41
248 249 0.603975 GAAGAACAGACGCCCTTGCT 60.604 55.000 0.00 0.00 34.43 3.91
249 250 1.578206 GGAAGAACAGACGCCCTTGC 61.578 60.000 0.00 0.00 0.00 4.01
250 251 0.035458 AGGAAGAACAGACGCCCTTG 59.965 55.000 0.00 0.00 0.00 3.61
251 252 0.765510 AAGGAAGAACAGACGCCCTT 59.234 50.000 0.00 0.00 0.00 3.95
252 253 0.321996 GAAGGAAGAACAGACGCCCT 59.678 55.000 0.00 0.00 0.00 5.19
253 254 1.014564 CGAAGGAAGAACAGACGCCC 61.015 60.000 0.00 0.00 0.00 6.13
254 255 0.038526 TCGAAGGAAGAACAGACGCC 60.039 55.000 0.00 0.00 0.00 5.68
255 256 1.341606 CTCGAAGGAAGAACAGACGC 58.658 55.000 0.00 0.00 0.00 5.19
256 257 1.540267 TCCTCGAAGGAAGAACAGACG 59.460 52.381 1.64 0.00 42.51 4.18
266 267 5.245526 GGCCTATAAATACTTCCTCGAAGGA 59.754 44.000 0.00 0.00 44.10 3.36
267 268 5.246429 AGGCCTATAAATACTTCCTCGAAGG 59.754 44.000 1.29 0.00 43.25 3.46
268 269 6.347859 AGGCCTATAAATACTTCCTCGAAG 57.652 41.667 1.29 0.00 44.37 3.79
269 270 7.844493 TTAGGCCTATAAATACTTCCTCGAA 57.156 36.000 14.74 0.00 0.00 3.71
270 271 7.844493 TTTAGGCCTATAAATACTTCCTCGA 57.156 36.000 14.74 0.00 0.00 4.04
271 272 8.897872 TTTTTAGGCCTATAAATACTTCCTCG 57.102 34.615 20.58 0.00 0.00 4.63
272 273 9.286170 CCTTTTTAGGCCTATAAATACTTCCTC 57.714 37.037 23.46 0.00 0.00 3.71
273 274 8.788799 ACCTTTTTAGGCCTATAAATACTTCCT 58.211 33.333 23.46 4.37 0.00 3.36
274 275 8.991783 ACCTTTTTAGGCCTATAAATACTTCC 57.008 34.615 23.46 0.00 0.00 3.46
276 277 8.692710 GCAACCTTTTTAGGCCTATAAATACTT 58.307 33.333 23.46 14.20 0.00 2.24
277 278 7.012989 CGCAACCTTTTTAGGCCTATAAATACT 59.987 37.037 23.46 11.39 0.00 2.12
278 279 7.136772 CGCAACCTTTTTAGGCCTATAAATAC 58.863 38.462 23.46 12.96 0.00 1.89
279 280 6.238814 GCGCAACCTTTTTAGGCCTATAAATA 60.239 38.462 23.46 9.28 0.00 1.40
280 281 5.451381 GCGCAACCTTTTTAGGCCTATAAAT 60.451 40.000 23.46 11.16 0.00 1.40
281 282 4.142337 GCGCAACCTTTTTAGGCCTATAAA 60.142 41.667 22.31 22.31 0.00 1.40
282 283 3.379057 GCGCAACCTTTTTAGGCCTATAA 59.621 43.478 14.74 12.75 0.00 0.98
283 284 2.946990 GCGCAACCTTTTTAGGCCTATA 59.053 45.455 14.74 5.97 0.00 1.31
284 285 1.749063 GCGCAACCTTTTTAGGCCTAT 59.251 47.619 14.74 0.00 0.00 2.57
285 286 1.170442 GCGCAACCTTTTTAGGCCTA 58.830 50.000 8.91 8.91 0.00 3.93
286 287 1.862602 CGCGCAACCTTTTTAGGCCT 61.863 55.000 11.78 11.78 0.00 5.19
287 288 1.443702 CGCGCAACCTTTTTAGGCC 60.444 57.895 8.75 0.00 0.00 5.19
288 289 1.443702 CCGCGCAACCTTTTTAGGC 60.444 57.895 8.75 0.00 0.00 3.93
289 290 0.386731 CACCGCGCAACCTTTTTAGG 60.387 55.000 8.75 0.00 0.00 2.69
290 291 0.386731 CCACCGCGCAACCTTTTTAG 60.387 55.000 8.75 0.00 0.00 1.85
291 292 0.818445 TCCACCGCGCAACCTTTTTA 60.818 50.000 8.75 0.00 0.00 1.52
292 293 2.070654 CTCCACCGCGCAACCTTTTT 62.071 55.000 8.75 0.00 0.00 1.94
293 294 2.517402 TCCACCGCGCAACCTTTT 60.517 55.556 8.75 0.00 0.00 2.27
294 295 2.978010 CTCCACCGCGCAACCTTT 60.978 61.111 8.75 0.00 0.00 3.11
295 296 3.883744 CTCTCCACCGCGCAACCTT 62.884 63.158 8.75 0.00 0.00 3.50
296 297 4.379243 CTCTCCACCGCGCAACCT 62.379 66.667 8.75 0.00 0.00 3.50
297 298 2.292794 TATCTCTCCACCGCGCAACC 62.293 60.000 8.75 0.00 0.00 3.77
298 299 0.249489 ATATCTCTCCACCGCGCAAC 60.249 55.000 8.75 0.00 0.00 4.17
299 300 0.464036 AATATCTCTCCACCGCGCAA 59.536 50.000 8.75 0.00 0.00 4.85
300 301 0.464036 AAATATCTCTCCACCGCGCA 59.536 50.000 8.75 0.00 0.00 6.09
301 302 1.583054 AAAATATCTCTCCACCGCGC 58.417 50.000 0.00 0.00 0.00 6.86
302 303 2.287915 CCAAAAATATCTCTCCACCGCG 59.712 50.000 0.00 0.00 0.00 6.46
303 304 3.541632 TCCAAAAATATCTCTCCACCGC 58.458 45.455 0.00 0.00 0.00 5.68
304 305 6.509418 TTTTCCAAAAATATCTCTCCACCG 57.491 37.500 0.00 0.00 0.00 4.94
305 306 8.066612 TCATTTTCCAAAAATATCTCTCCACC 57.933 34.615 0.00 0.00 0.00 4.61
306 307 8.743714 ACTCATTTTCCAAAAATATCTCTCCAC 58.256 33.333 0.00 0.00 0.00 4.02
307 308 8.884124 ACTCATTTTCCAAAAATATCTCTCCA 57.116 30.769 0.00 0.00 0.00 3.86
325 326 6.476380 CGCACCATTAAAATGCATACTCATTT 59.524 34.615 0.00 0.00 45.54 2.32
326 327 5.978919 CGCACCATTAAAATGCATACTCATT 59.021 36.000 0.00 0.00 39.39 2.57
327 328 5.299028 TCGCACCATTAAAATGCATACTCAT 59.701 36.000 0.00 0.00 39.39 2.90
328 329 4.637977 TCGCACCATTAAAATGCATACTCA 59.362 37.500 0.00 0.00 39.39 3.41
329 330 5.007626 TCTCGCACCATTAAAATGCATACTC 59.992 40.000 0.00 0.00 39.39 2.59
330 331 4.881273 TCTCGCACCATTAAAATGCATACT 59.119 37.500 0.00 0.00 39.39 2.12
331 332 5.168526 TCTCGCACCATTAAAATGCATAC 57.831 39.130 0.00 0.00 39.39 2.39
332 333 4.881273 ACTCTCGCACCATTAAAATGCATA 59.119 37.500 0.00 0.00 39.39 3.14
333 334 3.696051 ACTCTCGCACCATTAAAATGCAT 59.304 39.130 0.00 0.00 39.39 3.96
334 335 3.081061 ACTCTCGCACCATTAAAATGCA 58.919 40.909 8.97 0.00 39.39 3.96
335 336 3.764885 ACTCTCGCACCATTAAAATGC 57.235 42.857 0.00 0.16 35.08 3.56
336 337 6.603237 TGATACTCTCGCACCATTAAAATG 57.397 37.500 0.00 0.00 36.17 2.32
337 338 7.387948 GGTATGATACTCTCGCACCATTAAAAT 59.612 37.037 2.24 0.00 32.90 1.82
338 339 6.704493 GGTATGATACTCTCGCACCATTAAAA 59.296 38.462 2.24 0.00 32.90 1.52
339 340 6.041637 AGGTATGATACTCTCGCACCATTAAA 59.958 38.462 2.24 0.00 34.35 1.52
340 341 5.538813 AGGTATGATACTCTCGCACCATTAA 59.461 40.000 2.24 0.00 34.35 1.40
341 342 5.077564 AGGTATGATACTCTCGCACCATTA 58.922 41.667 2.24 0.00 34.35 1.90
342 343 3.898123 AGGTATGATACTCTCGCACCATT 59.102 43.478 2.24 0.00 34.35 3.16
343 344 3.501349 AGGTATGATACTCTCGCACCAT 58.499 45.455 2.24 0.00 34.35 3.55
344 345 2.945456 AGGTATGATACTCTCGCACCA 58.055 47.619 2.24 0.00 34.35 4.17
345 346 5.393243 GGAATAGGTATGATACTCTCGCACC 60.393 48.000 2.24 0.00 32.84 5.01
346 347 5.183331 TGGAATAGGTATGATACTCTCGCAC 59.817 44.000 2.24 0.00 0.00 5.34
347 348 5.183331 GTGGAATAGGTATGATACTCTCGCA 59.817 44.000 2.24 0.00 0.00 5.10
348 349 5.416326 AGTGGAATAGGTATGATACTCTCGC 59.584 44.000 2.24 0.00 0.00 5.03
349 350 7.455641 AAGTGGAATAGGTATGATACTCTCG 57.544 40.000 2.24 0.00 0.00 4.04
357 358 9.967451 TGTGAATAAAAAGTGGAATAGGTATGA 57.033 29.630 0.00 0.00 0.00 2.15
366 367 9.883142 AACTGAATTTGTGAATAAAAAGTGGAA 57.117 25.926 0.00 0.00 0.00 3.53
411 412 8.135529 TGGATAACAGACTACAAATATCGTGAG 58.864 37.037 0.00 0.00 0.00 3.51
412 413 8.002984 TGGATAACAGACTACAAATATCGTGA 57.997 34.615 0.00 0.00 0.00 4.35
413 414 8.642908 TTGGATAACAGACTACAAATATCGTG 57.357 34.615 0.00 0.00 0.00 4.35
414 415 9.095065 GTTTGGATAACAGACTACAAATATCGT 57.905 33.333 0.00 0.00 31.81 3.73
415 416 8.548721 GGTTTGGATAACAGACTACAAATATCG 58.451 37.037 0.00 0.00 34.75 2.92
416 417 8.837389 GGGTTTGGATAACAGACTACAAATATC 58.163 37.037 0.00 0.00 34.75 1.63
417 418 7.778382 GGGGTTTGGATAACAGACTACAAATAT 59.222 37.037 0.00 0.00 34.75 1.28
418 419 7.037153 AGGGGTTTGGATAACAGACTACAAATA 60.037 37.037 0.00 0.00 34.75 1.40
419 420 5.949952 GGGGTTTGGATAACAGACTACAAAT 59.050 40.000 0.00 0.00 34.75 2.32
420 421 5.073965 AGGGGTTTGGATAACAGACTACAAA 59.926 40.000 0.00 0.00 34.75 2.83
421 422 4.600111 AGGGGTTTGGATAACAGACTACAA 59.400 41.667 0.00 0.00 34.75 2.41
422 423 4.019681 CAGGGGTTTGGATAACAGACTACA 60.020 45.833 0.00 0.00 34.75 2.74
423 424 4.514401 CAGGGGTTTGGATAACAGACTAC 58.486 47.826 0.00 0.00 34.75 2.73
424 425 3.054655 GCAGGGGTTTGGATAACAGACTA 60.055 47.826 0.00 0.00 34.75 2.59
425 426 2.290960 GCAGGGGTTTGGATAACAGACT 60.291 50.000 0.00 0.00 34.75 3.24
426 427 2.092323 GCAGGGGTTTGGATAACAGAC 58.908 52.381 0.00 0.00 33.64 3.51
427 428 1.707989 TGCAGGGGTTTGGATAACAGA 59.292 47.619 0.00 0.00 0.00 3.41
428 429 2.214376 TGCAGGGGTTTGGATAACAG 57.786 50.000 0.00 0.00 0.00 3.16
468 469 7.179269 ACACACCATTAATGTACCCTTAATGT 58.821 34.615 23.13 14.99 41.66 2.71
469 470 7.639113 ACACACCATTAATGTACCCTTAATG 57.361 36.000 20.61 20.61 42.34 1.90
470 471 8.554011 AGTACACACCATTAATGTACCCTTAAT 58.446 33.333 14.25 5.23 46.47 1.40
471 472 7.920227 AGTACACACCATTAATGTACCCTTAA 58.080 34.615 14.25 0.00 46.47 1.85
472 473 7.499200 AGTACACACCATTAATGTACCCTTA 57.501 36.000 14.25 0.00 46.47 2.69
473 474 6.382919 AGTACACACCATTAATGTACCCTT 57.617 37.500 14.25 0.00 46.47 3.95
474 475 6.899075 TCTAGTACACACCATTAATGTACCCT 59.101 38.462 14.25 3.76 46.47 4.34
475 476 7.116075 TCTAGTACACACCATTAATGTACCC 57.884 40.000 14.25 0.00 46.47 3.69
476 477 8.036575 TGTTCTAGTACACACCATTAATGTACC 58.963 37.037 14.25 0.20 46.47 3.34
477 478 8.991243 TGTTCTAGTACACACCATTAATGTAC 57.009 34.615 14.25 10.71 45.92 2.90
478 479 9.647797 CTTGTTCTAGTACACACCATTAATGTA 57.352 33.333 14.25 0.00 0.00 2.29
479 480 7.119262 GCTTGTTCTAGTACACACCATTAATGT 59.881 37.037 14.25 0.00 0.00 2.71
480 481 7.119116 TGCTTGTTCTAGTACACACCATTAATG 59.881 37.037 8.58 8.58 0.00 1.90
518 519 4.461431 TCAAAGCTCACCTCGATTACTACA 59.539 41.667 0.00 0.00 0.00 2.74
528 529 4.517285 TGGACATTATCAAAGCTCACCTC 58.483 43.478 0.00 0.00 0.00 3.85
529 530 4.574674 TGGACATTATCAAAGCTCACCT 57.425 40.909 0.00 0.00 0.00 4.00
531 532 5.824904 ACATGGACATTATCAAAGCTCAC 57.175 39.130 0.00 0.00 0.00 3.51
537 538 7.201812 GGCTTGACATACATGGACATTATCAAA 60.202 37.037 0.00 0.00 0.00 2.69
547 548 0.180171 CGGGGCTTGACATACATGGA 59.820 55.000 0.00 0.00 0.00 3.41
548 549 0.180171 TCGGGGCTTGACATACATGG 59.820 55.000 0.00 0.00 0.00 3.66
558 559 0.243636 GAAACCAATGTCGGGGCTTG 59.756 55.000 0.00 0.00 0.00 4.01
563 564 2.778299 TCTTCAGAAACCAATGTCGGG 58.222 47.619 0.00 0.00 0.00 5.14
564 565 5.874810 TCTAATCTTCAGAAACCAATGTCGG 59.125 40.000 0.00 0.00 0.00 4.79
565 566 6.968131 TCTAATCTTCAGAAACCAATGTCG 57.032 37.500 0.00 0.00 0.00 4.35
566 567 7.094634 TGCTTCTAATCTTCAGAAACCAATGTC 60.095 37.037 0.00 0.00 31.84 3.06
567 568 6.716628 TGCTTCTAATCTTCAGAAACCAATGT 59.283 34.615 0.00 0.00 31.84 2.71
568 569 7.120285 TCTGCTTCTAATCTTCAGAAACCAATG 59.880 37.037 0.00 0.00 31.84 2.82
569 570 7.170965 TCTGCTTCTAATCTTCAGAAACCAAT 58.829 34.615 0.00 0.00 31.84 3.16
570 571 6.533730 TCTGCTTCTAATCTTCAGAAACCAA 58.466 36.000 0.00 0.00 31.84 3.67
571 572 6.114187 TCTGCTTCTAATCTTCAGAAACCA 57.886 37.500 0.00 0.00 31.84 3.67
572 573 5.584251 CCTCTGCTTCTAATCTTCAGAAACC 59.416 44.000 0.00 0.00 33.93 3.27
595 596 7.038659 CGTTGATTCATTCCTATATCCTCTCC 58.961 42.308 0.00 0.00 0.00 3.71
596 597 7.831753 TCGTTGATTCATTCCTATATCCTCTC 58.168 38.462 0.00 0.00 0.00 3.20
597 598 7.782897 TCGTTGATTCATTCCTATATCCTCT 57.217 36.000 0.00 0.00 0.00 3.69
598 599 9.092876 GATTCGTTGATTCATTCCTATATCCTC 57.907 37.037 0.00 0.00 0.00 3.71
599 600 8.043710 GGATTCGTTGATTCATTCCTATATCCT 58.956 37.037 0.00 0.00 0.00 3.24
600 601 8.043710 AGGATTCGTTGATTCATTCCTATATCC 58.956 37.037 0.00 0.00 30.52 2.59
601 602 8.877779 CAGGATTCGTTGATTCATTCCTATATC 58.122 37.037 0.00 0.00 31.11 1.63
602 603 8.378565 ACAGGATTCGTTGATTCATTCCTATAT 58.621 33.333 0.00 0.00 31.11 0.86
603 604 7.657354 CACAGGATTCGTTGATTCATTCCTATA 59.343 37.037 0.00 0.00 31.11 1.31
604 605 6.484643 CACAGGATTCGTTGATTCATTCCTAT 59.515 38.462 0.00 0.00 31.11 2.57
605 606 5.817296 CACAGGATTCGTTGATTCATTCCTA 59.183 40.000 0.00 0.00 31.11 2.94
606 607 4.637534 CACAGGATTCGTTGATTCATTCCT 59.362 41.667 0.00 0.00 32.43 3.36
608 609 4.346129 GCACAGGATTCGTTGATTCATTC 58.654 43.478 0.00 0.00 0.00 2.67
610 611 2.352651 CGCACAGGATTCGTTGATTCAT 59.647 45.455 0.00 0.00 0.00 2.57
611 612 1.731709 CGCACAGGATTCGTTGATTCA 59.268 47.619 0.00 0.00 0.00 2.57
612 613 1.732259 ACGCACAGGATTCGTTGATTC 59.268 47.619 0.00 0.00 31.89 2.52
613 614 1.732259 GACGCACAGGATTCGTTGATT 59.268 47.619 0.00 0.00 36.50 2.57
615 616 1.006825 CGACGCACAGGATTCGTTGA 61.007 55.000 0.00 0.00 39.30 3.18
616 617 1.006825 TCGACGCACAGGATTCGTTG 61.007 55.000 0.00 0.00 38.56 4.10
617 618 1.007336 GTCGACGCACAGGATTCGTT 61.007 55.000 0.00 0.00 36.50 3.85
618 619 1.443872 GTCGACGCACAGGATTCGT 60.444 57.895 0.00 0.00 39.33 3.85
619 620 1.406219 CTGTCGACGCACAGGATTCG 61.406 60.000 11.62 0.00 40.26 3.34
620 621 0.109272 TCTGTCGACGCACAGGATTC 60.109 55.000 20.01 0.00 43.59 2.52
624 625 0.439985 CAAATCTGTCGACGCACAGG 59.560 55.000 20.01 0.00 43.59 4.00
626 627 0.948623 CCCAAATCTGTCGACGCACA 60.949 55.000 11.62 0.00 0.00 4.57
627 628 1.635663 CCCCAAATCTGTCGACGCAC 61.636 60.000 11.62 0.00 0.00 5.34
633 634 2.745884 TGCGCCCCAAATCTGTCG 60.746 61.111 4.18 0.00 0.00 4.35
646 647 0.316607 TCGATTGTTTGTGTGTGCGC 60.317 50.000 0.00 0.00 0.00 6.09
648 649 2.755836 ACTCGATTGTTTGTGTGTGC 57.244 45.000 0.00 0.00 0.00 4.57
653 654 5.230942 ACTCCTCTTACTCGATTGTTTGTG 58.769 41.667 0.00 0.00 0.00 3.33
656 657 7.648039 ATCTACTCCTCTTACTCGATTGTTT 57.352 36.000 0.00 0.00 0.00 2.83
657 658 7.994334 AGTATCTACTCCTCTTACTCGATTGTT 59.006 37.037 0.00 0.00 0.00 2.83
659 660 7.972832 AGTATCTACTCCTCTTACTCGATTG 57.027 40.000 0.00 0.00 0.00 2.67
660 661 8.316214 CCTAGTATCTACTCCTCTTACTCGATT 58.684 40.741 0.00 0.00 37.73 3.34
661 662 7.455638 ACCTAGTATCTACTCCTCTTACTCGAT 59.544 40.741 0.00 0.00 37.73 3.59
662 663 6.782000 ACCTAGTATCTACTCCTCTTACTCGA 59.218 42.308 0.00 0.00 37.73 4.04
663 664 6.996509 ACCTAGTATCTACTCCTCTTACTCG 58.003 44.000 0.00 0.00 37.73 4.18
665 666 8.219868 GGAAACCTAGTATCTACTCCTCTTACT 58.780 40.741 0.00 0.00 37.73 2.24
666 667 8.219868 AGGAAACCTAGTATCTACTCCTCTTAC 58.780 40.741 0.00 0.00 37.73 2.34
667 668 8.347557 AGGAAACCTAGTATCTACTCCTCTTA 57.652 38.462 0.00 0.00 37.73 2.10
668 669 7.228652 AGGAAACCTAGTATCTACTCCTCTT 57.771 40.000 0.00 0.00 37.73 2.85
669 670 6.851965 AGGAAACCTAGTATCTACTCCTCT 57.148 41.667 0.00 0.00 37.73 3.69
670 671 8.439172 TCTTAGGAAACCTAGTATCTACTCCTC 58.561 40.741 0.00 0.00 37.42 3.71
671 672 8.219868 GTCTTAGGAAACCTAGTATCTACTCCT 58.780 40.741 0.00 0.00 37.42 3.69
672 673 7.997803 TGTCTTAGGAAACCTAGTATCTACTCC 59.002 40.741 0.00 0.00 37.42 3.85
673 674 8.977267 TGTCTTAGGAAACCTAGTATCTACTC 57.023 38.462 0.00 0.00 37.42 2.59
674 675 9.577222 GATGTCTTAGGAAACCTAGTATCTACT 57.423 37.037 0.00 0.00 37.42 2.57
675 676 9.352191 TGATGTCTTAGGAAACCTAGTATCTAC 57.648 37.037 0.00 0.00 37.42 2.59
703 704 6.183361 TGTCAGAATAAACAGGGCCAATTTTT 60.183 34.615 6.18 0.44 0.00 1.94
704 705 5.306678 TGTCAGAATAAACAGGGCCAATTTT 59.693 36.000 6.18 4.20 0.00 1.82
705 706 4.837860 TGTCAGAATAAACAGGGCCAATTT 59.162 37.500 6.18 8.35 0.00 1.82
706 707 4.415596 TGTCAGAATAAACAGGGCCAATT 58.584 39.130 6.18 0.00 0.00 2.32
707 708 4.019174 CTGTCAGAATAAACAGGGCCAAT 58.981 43.478 6.18 0.00 39.36 3.16
708 709 3.181434 ACTGTCAGAATAAACAGGGCCAA 60.181 43.478 6.18 0.00 45.71 4.52
709 710 2.375174 ACTGTCAGAATAAACAGGGCCA 59.625 45.455 6.18 0.00 45.71 5.36
710 711 2.749621 CACTGTCAGAATAAACAGGGCC 59.250 50.000 6.91 0.00 45.71 5.80
713 714 5.056480 TCACACACTGTCAGAATAAACAGG 58.944 41.667 6.91 0.00 45.71 4.00
714 715 6.791887 ATCACACACTGTCAGAATAAACAG 57.208 37.500 6.91 1.17 46.61 3.16
715 716 7.566760 AAATCACACACTGTCAGAATAAACA 57.433 32.000 6.91 0.00 0.00 2.83
716 717 9.599322 CTAAAATCACACACTGTCAGAATAAAC 57.401 33.333 6.91 0.00 0.00 2.01
717 718 9.337396 ACTAAAATCACACACTGTCAGAATAAA 57.663 29.630 6.91 0.00 0.00 1.40
718 719 8.902540 ACTAAAATCACACACTGTCAGAATAA 57.097 30.769 6.91 0.00 0.00 1.40
719 720 8.902540 AACTAAAATCACACACTGTCAGAATA 57.097 30.769 6.91 0.00 0.00 1.75
720 721 7.807977 AACTAAAATCACACACTGTCAGAAT 57.192 32.000 6.91 0.00 0.00 2.40
721 722 7.042051 GCTAACTAAAATCACACACTGTCAGAA 60.042 37.037 6.91 0.00 0.00 3.02
722 723 6.423905 GCTAACTAAAATCACACACTGTCAGA 59.576 38.462 6.91 0.00 0.00 3.27
723 724 6.202762 TGCTAACTAAAATCACACACTGTCAG 59.797 38.462 0.00 0.00 0.00 3.51
724 725 6.052360 TGCTAACTAAAATCACACACTGTCA 58.948 36.000 0.00 0.00 0.00 3.58
725 726 6.539649 TGCTAACTAAAATCACACACTGTC 57.460 37.500 0.00 0.00 0.00 3.51
726 727 6.710295 TGATGCTAACTAAAATCACACACTGT 59.290 34.615 0.00 0.00 0.00 3.55
727 728 7.132694 TGATGCTAACTAAAATCACACACTG 57.867 36.000 0.00 0.00 0.00 3.66
728 729 6.128172 GCTGATGCTAACTAAAATCACACACT 60.128 38.462 0.00 0.00 36.03 3.55
729 730 6.024049 GCTGATGCTAACTAAAATCACACAC 58.976 40.000 0.00 0.00 36.03 3.82
733 734 5.063438 TGTCGCTGATGCTAACTAAAATCAC 59.937 40.000 0.00 0.00 36.97 3.06
741 742 1.363744 GCTTGTCGCTGATGCTAACT 58.636 50.000 0.00 0.00 36.97 2.24
742 743 3.885777 GCTTGTCGCTGATGCTAAC 57.114 52.632 0.00 0.00 36.97 2.34
752 753 2.798834 TAAAATACGCAGCTTGTCGC 57.201 45.000 0.00 0.00 39.57 5.19
753 754 4.953269 TCTTTAAAATACGCAGCTTGTCG 58.047 39.130 0.00 0.00 0.00 4.35
754 755 5.106673 ACCTCTTTAAAATACGCAGCTTGTC 60.107 40.000 0.00 0.00 0.00 3.18
755 756 4.760204 ACCTCTTTAAAATACGCAGCTTGT 59.240 37.500 0.00 0.00 0.00 3.16
756 757 5.088739 CACCTCTTTAAAATACGCAGCTTG 58.911 41.667 0.00 0.00 0.00 4.01
757 758 5.001232 TCACCTCTTTAAAATACGCAGCTT 58.999 37.500 0.00 0.00 0.00 3.74
758 759 4.575885 TCACCTCTTTAAAATACGCAGCT 58.424 39.130 0.00 0.00 0.00 4.24
759 760 4.939509 TCACCTCTTTAAAATACGCAGC 57.060 40.909 0.00 0.00 0.00 5.25
760 761 7.526608 TCAAATCACCTCTTTAAAATACGCAG 58.473 34.615 0.00 0.00 0.00 5.18
761 762 7.441890 TCAAATCACCTCTTTAAAATACGCA 57.558 32.000 0.00 0.00 0.00 5.24
762 763 8.911247 ATTCAAATCACCTCTTTAAAATACGC 57.089 30.769 0.00 0.00 0.00 4.42
815 826 1.266178 TCAGAATTGAGGACGGCTGA 58.734 50.000 0.00 0.00 0.00 4.26
818 829 2.386661 TCTTCAGAATTGAGGACGGC 57.613 50.000 0.00 0.00 34.82 5.68
820 831 3.126000 GGCTTTCTTCAGAATTGAGGACG 59.874 47.826 0.00 0.00 38.93 4.79
842 853 2.842208 TTGTTCTTTTGTGCCTGACG 57.158 45.000 0.00 0.00 0.00 4.35
850 861 7.973601 AGCGAAATGAAAATTTGTTCTTTTGT 58.026 26.923 7.92 0.00 35.91 2.83
855 866 6.538381 ACCAAAGCGAAATGAAAATTTGTTCT 59.462 30.769 0.00 0.00 0.00 3.01
869 880 2.022240 GCACCCCAACCAAAGCGAAA 62.022 55.000 0.00 0.00 0.00 3.46
874 885 3.989787 GGCGCACCCCAACCAAAG 61.990 66.667 10.83 0.00 0.00 2.77
897 908 4.034258 CCGTTGCACTGCTGGCTG 62.034 66.667 1.98 0.00 0.00 4.85
913 924 3.357079 CTTGTGTGTCGCCCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
914 925 3.357079 CCTTGTGTGTCGCCCAGC 61.357 66.667 0.00 0.00 0.00 4.85
915 926 2.669569 CCCTTGTGTGTCGCCCAG 60.670 66.667 0.00 0.00 0.00 4.45
916 927 4.947147 GCCCTTGTGTGTCGCCCA 62.947 66.667 0.00 0.00 0.00 5.36
928 939 3.090765 CTTGCTACTGGGGCCCTT 58.909 61.111 25.93 13.52 0.00 3.95
932 943 1.908483 AGTAGCTTGCTACTGGGGC 59.092 57.895 27.97 6.13 38.58 5.80
937 948 1.276421 CCACCACAGTAGCTTGCTACT 59.724 52.381 24.54 24.54 40.45 2.57
938 949 1.275291 TCCACCACAGTAGCTTGCTAC 59.725 52.381 21.24 21.24 0.00 3.58
989 1000 1.530419 TGGGCCATGTGTCCACAAC 60.530 57.895 0.00 0.00 45.41 3.32
996 1007 1.845791 TCTGATATGTGGGCCATGTGT 59.154 47.619 10.70 0.00 34.86 3.72
998 1009 5.525454 AATATCTGATATGTGGGCCATGT 57.475 39.130 10.70 3.86 34.86 3.21
1031 1042 7.650104 GGCTAAGATCAAGTGTAGTATCTGTTC 59.350 40.741 0.00 0.00 0.00 3.18
1036 1047 8.718102 TTTTGGCTAAGATCAAGTGTAGTATC 57.282 34.615 0.00 0.00 0.00 2.24
1079 1090 2.581354 CCACGGCAGAAGGGAGAG 59.419 66.667 0.00 0.00 0.00 3.20
1080 1091 3.003173 CCCACGGCAGAAGGGAGA 61.003 66.667 12.25 0.00 45.80 3.71
1085 1096 2.046892 CCAGACCCACGGCAGAAG 60.047 66.667 0.00 0.00 0.00 2.85
1086 1097 1.122632 TAACCAGACCCACGGCAGAA 61.123 55.000 0.00 0.00 0.00 3.02
1087 1098 0.907704 ATAACCAGACCCACGGCAGA 60.908 55.000 0.00 0.00 0.00 4.26
1089 1100 1.502690 ATATAACCAGACCCACGGCA 58.497 50.000 0.00 0.00 0.00 5.69
1169 1180 2.264166 GGAACAGAGAGCTGCGCT 59.736 61.111 9.73 5.34 46.26 5.92
1170 1181 3.184683 CGGAACAGAGAGCTGCGC 61.185 66.667 0.00 0.00 46.26 6.09
1183 1194 2.121786 CTCTCGAAACAACGAACGGAA 58.878 47.619 0.00 0.00 41.67 4.30
1185 1205 0.782384 CCTCTCGAAACAACGAACGG 59.218 55.000 0.00 0.00 41.67 4.44
1287 1309 5.354234 TCCGAAGATGAAAATAGGCAAGTTC 59.646 40.000 0.00 0.00 0.00 3.01
1347 1380 0.447406 CATTGGCGCAAACTCGATCA 59.553 50.000 10.83 0.00 0.00 2.92
1383 1449 1.212490 CGACACCATTGCCGCATTT 59.788 52.632 0.00 0.00 0.00 2.32
1384 1450 1.971167 ACGACACCATTGCCGCATT 60.971 52.632 0.00 0.00 0.00 3.56
1385 1451 2.359850 ACGACACCATTGCCGCAT 60.360 55.556 0.00 0.00 0.00 4.73
1397 1463 0.033796 CTCTACCCCTACCCACGACA 60.034 60.000 0.00 0.00 0.00 4.35
1431 1507 2.140792 ACCACAAGAGGTCGGCACT 61.141 57.895 0.00 0.00 37.28 4.40
1433 1509 2.425592 CACCACAAGAGGTCGGCA 59.574 61.111 0.00 0.00 40.77 5.69
1434 1510 3.050275 GCACCACAAGAGGTCGGC 61.050 66.667 0.00 0.00 40.77 5.54
1436 1512 2.022129 GTCGCACCACAAGAGGTCG 61.022 63.158 0.00 0.00 40.77 4.79
1477 1553 2.279502 TTACTCCTGCTAGCCGTGCG 62.280 60.000 13.29 0.00 0.00 5.34
1478 1554 0.806492 GTTACTCCTGCTAGCCGTGC 60.806 60.000 13.29 0.00 0.00 5.34
1479 1555 0.530744 TGTTACTCCTGCTAGCCGTG 59.469 55.000 13.29 5.87 0.00 4.94
1480 1556 0.818296 CTGTTACTCCTGCTAGCCGT 59.182 55.000 13.29 6.77 0.00 5.68
1485 1561 1.515954 GCCGCTGTTACTCCTGCTA 59.484 57.895 0.00 0.00 0.00 3.49
1515 1591 2.396590 TAACCCGGAAAGATGCTGAC 57.603 50.000 0.73 0.00 0.00 3.51
1516 1592 3.071023 CCTATAACCCGGAAAGATGCTGA 59.929 47.826 0.73 0.00 0.00 4.26
1526 1613 1.513858 ATGCAACCCTATAACCCGGA 58.486 50.000 0.73 0.00 0.00 5.14
1545 1632 5.101648 TGAGATCCTCACATATGTGCAAA 57.898 39.130 27.71 16.24 45.25 3.68
1546 1633 4.758773 TGAGATCCTCACATATGTGCAA 57.241 40.909 27.71 16.56 45.25 4.08
1547 1634 4.758773 TTGAGATCCTCACATATGTGCA 57.241 40.909 27.71 16.33 45.25 4.57
1548 1635 5.996513 AGATTTGAGATCCTCACATATGTGC 59.003 40.000 27.71 15.05 45.25 4.57
1549 1636 6.990939 ACAGATTTGAGATCCTCACATATGTG 59.009 38.462 26.83 26.83 45.27 3.21
1550 1637 7.134362 ACAGATTTGAGATCCTCACATATGT 57.866 36.000 14.09 14.09 43.56 2.29
1551 1638 7.215085 TGACAGATTTGAGATCCTCACATATG 58.785 38.462 13.12 13.12 42.18 1.78
1552 1639 7.370905 TGACAGATTTGAGATCCTCACATAT 57.629 36.000 0.00 0.00 40.46 1.78
1553 1640 6.796785 TGACAGATTTGAGATCCTCACATA 57.203 37.500 0.00 0.00 40.46 2.29
1559 1646 3.265791 GCGTTGACAGATTTGAGATCCT 58.734 45.455 0.00 0.00 0.00 3.24
1562 1649 2.413112 CGTGCGTTGACAGATTTGAGAT 59.587 45.455 0.00 0.00 0.00 2.75
1565 1652 0.865111 CCGTGCGTTGACAGATTTGA 59.135 50.000 0.00 0.00 0.00 2.69
1582 1669 2.624636 GGCGGATATAACCATAACCCG 58.375 52.381 0.00 0.00 0.00 5.28
1583 1670 2.027837 ACGGCGGATATAACCATAACCC 60.028 50.000 13.24 0.00 0.00 4.11
1584 1671 3.256558 GACGGCGGATATAACCATAACC 58.743 50.000 13.24 0.00 0.00 2.85
1585 1672 3.256558 GGACGGCGGATATAACCATAAC 58.743 50.000 13.24 0.00 0.00 1.89
1586 1673 2.898612 TGGACGGCGGATATAACCATAA 59.101 45.455 13.24 0.00 0.00 1.90
1587 1674 2.527497 TGGACGGCGGATATAACCATA 58.473 47.619 13.24 0.00 0.00 2.74
1588 1675 1.344065 TGGACGGCGGATATAACCAT 58.656 50.000 13.24 0.00 0.00 3.55
1589 1676 1.121378 TTGGACGGCGGATATAACCA 58.879 50.000 13.24 6.10 0.00 3.67
1597 1684 0.035598 TTTCATCTTTGGACGGCGGA 59.964 50.000 13.24 0.00 0.00 5.54
1641 1728 7.432252 GGTTTACTACATCATGCTTTAACATGC 59.568 37.037 0.00 0.00 45.75 4.06
1688 1786 2.480555 GCAGGTTTGTGCGATCGG 59.519 61.111 18.30 0.00 32.74 4.18
1712 1810 0.185901 AGCAAAACCCTCTTGGCAGA 59.814 50.000 0.00 0.00 37.83 4.26
1717 1815 1.000171 GCCTTGAGCAAAACCCTCTTG 60.000 52.381 0.00 0.00 42.97 3.02
1755 1854 1.153978 CACCATGCATGTTGGACGC 60.154 57.895 24.58 0.00 37.69 5.19
1893 1992 9.239002 CTAGTGTATCTGCTAAATTAGTCACAC 57.761 37.037 1.68 8.57 33.75 3.82
1907 2006 3.799420 GCTGTGCTTACTAGTGTATCTGC 59.201 47.826 5.39 4.66 0.00 4.26
1909 2008 4.023980 TGGCTGTGCTTACTAGTGTATCT 58.976 43.478 5.39 0.00 0.00 1.98
1913 2012 2.248248 TCTGGCTGTGCTTACTAGTGT 58.752 47.619 5.39 0.00 0.00 3.55
1944 2043 6.946229 ACGTCATATATTTCATAACGGAGC 57.054 37.500 0.00 0.00 33.26 4.70
2014 2113 9.483489 TCAGTTAAATTAGTATGTACTCCCTCA 57.517 33.333 0.00 0.00 37.73 3.86
2042 2141 2.151502 CTCCTCCAGGAAGCTAGTGA 57.848 55.000 0.00 0.00 44.91 3.41
2078 2177 1.890041 TCTTTCCCGTTGCGTGTGG 60.890 57.895 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.